Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146860 | XP_003589387.1 | 98.235 | 340 | 5 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146860 | sp|Q8L999|BPC6_ARATH | 64.804 | 358 | 91 | 15 | 1 | 339 | 1 | 342 | 1.66e-148 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146860 | G7I6G1 | 98.235 | 340 | 5 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0146860 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146860 | MtrunA17_Chr1g0156031 | 98.235 | 340 | 5 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
| Msa0146860 | MtrunA17_Chr8g0385961 | 50.000 | 348 | 126 | 10 | 2 | 339 | 3 | 312 | 4.32e-104 | 308 |
| Msa0146860 | MtrunA17_Chr6g0479911 | 41.618 | 173 | 101 | 0 | 167 | 339 | 117 | 289 | 8.39e-46 | 157 |
| Msa0146860 | MtrunA17_Chr8g0375531 | 52.419 | 124 | 59 | 0 | 216 | 339 | 157 | 280 | 1.37e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146860 | AT5G42520.1 | 64.804 | 358 | 91 | 15 | 1 | 339 | 1 | 342 | 1.69e-149 | 424 |
| Msa0146860 | AT5G42520.2 | 63.687 | 358 | 91 | 15 | 1 | 339 | 1 | 338 | 3.07e-145 | 414 |
| Msa0146860 | AT5G42520.3 | 62.199 | 291 | 85 | 11 | 65 | 339 | 1 | 282 | 3.66e-116 | 338 |
| Msa0146860 | AT2G21240.1 | 48.830 | 342 | 115 | 7 | 5 | 339 | 8 | 296 | 5.15e-100 | 297 |
| Msa0146860 | AT2G21240.2 | 48.830 | 342 | 115 | 7 | 5 | 339 | 8 | 296 | 5.15e-100 | 297 |
| Msa0146860 | AT4G38910.2 | 44.970 | 338 | 121 | 7 | 5 | 339 | 8 | 283 | 1.27e-92 | 278 |
| Msa0146860 | AT4G38910.1 | 44.937 | 316 | 112 | 6 | 24 | 339 | 5 | 258 | 2.41e-86 | 261 |
| Msa0146860 | AT2G35550.2 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.09e-45 | 155 |
| Msa0146860 | AT2G35550.4 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.09e-45 | 155 |
| Msa0146860 | AT2G35550.3 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.09e-45 | 155 |
| Msa0146860 | AT2G35550.1 | 55.932 | 118 | 52 | 0 | 222 | 339 | 154 | 271 | 1.48e-45 | 156 |
| Msa0146860 | AT1G68120.1 | 57.009 | 107 | 46 | 0 | 233 | 339 | 163 | 269 | 7.82e-44 | 152 |
| Msa0146860 | AT2G01930.2 | 56.364 | 110 | 48 | 0 | 230 | 339 | 174 | 283 | 1.31e-43 | 152 |
| Msa0146860 | AT2G01930.1 | 56.364 | 110 | 48 | 0 | 230 | 339 | 174 | 283 | 1.31e-43 | 152 |
| Msa0146860 | AT1G14685.1 | 55.455 | 110 | 49 | 0 | 230 | 339 | 170 | 279 | 1.39e-42 | 149 |
| Msa0146860 | AT1G14685.4 | 55.455 | 110 | 49 | 0 | 230 | 339 | 170 | 279 | 1.39e-42 | 149 |
| Msa0146860 | AT1G14685.3 | 55.455 | 110 | 49 | 0 | 230 | 339 | 170 | 279 | 1.39e-42 | 149 |
| Msa0146860 | AT1G14685.2 | 55.455 | 110 | 49 | 0 | 230 | 339 | 170 | 279 | 1.39e-42 | 149 |
Find 134 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGCCCAATGGTCTTTA+AGG | 0.149233 | 1_4:+6618853 | None:intergenic |
| GGTAAACCATTTGCCTAATA+TGG | 0.151975 | 1_4:-6619444 | Msa0146860:CDS |
| TTTCCTTGGATCCTAATTAT+AGG | 0.234185 | 1_4:+6618676 | None:intergenic |
| TTCTTGTCTTGTTTCTTACT+TGG | 0.243722 | 1_4:+6622131 | None:intergenic |
| CCATTCAAGCTCTTTGTTGT+TGG | 0.281988 | 1_4:+6619226 | None:intergenic |
| TTGATCATGTATTGCCTATC+TGG | 0.283114 | 1_4:+6618780 | None:intergenic |
| TTGCTGTACAACCACTTTAT+CGG | 0.289810 | 1_4:-6619006 | Msa0146860:CDS |
| TCTGGCCCTCTCCGAGAAAA+AGG | 0.299212 | 1_4:-6619669 | Msa0146860:CDS |
| AGTAGTGAGGAAATGATAAA+TGG | 0.302982 | 1_4:-6619200 | Msa0146860:CDS |
| GATTGACATAATTTGCTTCA+TGG | 0.306231 | 1_4:+6619727 | None:intergenic |
| GTTGAACAAGGAGGAAAATA+AGG | 0.306983 | 1_4:-6618736 | Msa0146860:three_prime_UTR |
| CTGATGGACGATCGTGAAAA+TGG | 0.307285 | 1_4:-6619952 | Msa0146860:CDS |
| TGGTGGCAATCGCATTTAAT+AGG | 0.330547 | 1_4:-6618595 | Msa0146860:three_prime_UTR |
| AAAATGAATAATGTTCTTGT+TGG | 0.333606 | 1_4:+6622056 | None:intergenic |
| CTTACTTTCCTTTGGTCGTT+TGG | 0.335012 | 1_4:+6619328 | None:intergenic |
| TAAGAAGAATCACCCATATT+AGG | 0.336214 | 1_4:+6619431 | None:intergenic |
| AATGTGTCATTCCTATAATT+AGG | 0.341337 | 1_4:-6618687 | Msa0146860:three_prime_UTR |
| AATAATGTTCTTGTTGGATT+TGG | 0.376856 | 1_4:+6622062 | None:intergenic |
| TTGCAGGTCAAAATGGTTAC+CGG | 0.376883 | 1_4:+6618631 | None:intergenic |
| CAATGGTCTTTAAGGTCAAC+CGG | 0.380775 | 1_4:+6618861 | None:intergenic |
| TTTCCCAACCTCTGAAGAAA+TGG | 0.384675 | 1_4:+6619364 | None:intergenic |
| ACCAAGTTGGATGCGGGATT+AGG | 0.385132 | 1_4:-6620019 | Msa0146860:five_prime_UTR |
| GAATCAGACTTACTTTCCTT+TGG | 0.398078 | 1_4:+6619320 | None:intergenic |
| CCAACAACAAAGAGCTTGAA+TGG | 0.401945 | 1_4:-6619226 | Msa0146860:CDS |
| CTACCATTTGTTAATTCTGA+TGG | 0.405480 | 1_4:-6619968 | Msa0146860:exon |
| TCTTGTTTCTTACTTGGGTA+TGG | 0.405743 | 1_4:+6622137 | None:intergenic |
| GGCCAGATTTCTTTCTTGAA+TGG | 0.411936 | 1_4:+6619685 | None:intergenic |
| GGAACGGAATAATGCACTTA+TGG | 0.418242 | 1_4:-6619594 | Msa0146860:CDS |
| CGAGAAAATGCTTTGGCCAA+TGG | 0.428561 | 1_4:-6619539 | Msa0146860:CDS |
| TCTTGTCTTGTTTCTTACTT+GGG | 0.428949 | 1_4:+6622132 | None:intergenic |
| GTATCGATTTGTACCATGTT+TGG | 0.434696 | 1_4:+6618836 | None:intergenic |
| TTCCCAACCTCTGAAGAAAT+GGG | 0.437141 | 1_4:+6619365 | None:intergenic |
| GTTGATTCGGATTCAGTCGC+TGG | 0.437150 | 1_4:-6620247 | Msa0146860:five_prime_UTR |
| CTAACCTCGCAGCCGAAGTC+CGG | 0.439809 | 1_4:+6621556 | None:intergenic |
| AGGTTTCCAATCAGCCTTTG+AGG | 0.441798 | 1_4:+6619148 | None:intergenic |
| TATACATCACCTTCCGCAAC+AGG | 0.447735 | 1_4:-6619465 | Msa0146860:CDS |
| AATCACCCATATTAGGCAAA+TGG | 0.448313 | 1_4:+6619438 | None:intergenic |
| TTGTACCATGTTTGGCCCAA+TGG | 0.454297 | 1_4:+6618844 | None:intergenic |
| ATAATTAGGATCCAAGGAAA+TGG | 0.454358 | 1_4:-6618673 | Msa0146860:three_prime_UTR |
| TAGCAGCCTCAAAGGCTGAT+TGG | 0.454649 | 1_4:-6619154 | Msa0146860:CDS |
| AATATGGGTGATTCTTCTTA+CGG | 0.455899 | 1_4:-6619428 | Msa0146860:CDS |
| AGATCAATATAAATCTGCTC+AGG | 0.457509 | 1_4:-6619917 | Msa0146860:CDS |
| TTCTGAGACAGTGCTACAAA+TGG | 0.466001 | 1_4:-6619052 | Msa0146860:CDS |
| GTACAAGAGCATGCTGGTGC+TGG | 0.473862 | 1_4:+6619080 | None:intergenic |
| GCACCAGCATGCTCTTGTAC+TGG | 0.474798 | 1_4:-6619077 | Msa0146860:CDS |
| GGGAAGGTGAGCTGGTAATC+CGG | 0.477887 | 1_4:-6621575 | Msa0146860:five_prime_UTR |
| AACAAAAGGCATGCTCGAAT+AGG | 0.478414 | 1_4:-6618960 | Msa0146860:CDS |
| CGGTTGACCTTAAAGACCAT+TGG | 0.478594 | 1_4:-6618860 | Msa0146860:CDS |
| TCTGAGACAGTGCTACAAAT+GGG | 0.478630 | 1_4:-6619051 | Msa0146860:CDS |
| GTAAACCATTTGCCTAATAT+GGG | 0.479892 | 1_4:-6619443 | Msa0146860:CDS |
| TCTTAACCCTCTAGTTCAAA+GGG | 0.482472 | 1_4:-6621595 | Msa0146860:five_prime_UTR |
| CAGTGCTACAAATGGGGTAA+TGG | 0.484703 | 1_4:-6619044 | Msa0146860:CDS |
| TCAGTTTCGAGAAAATGCTT+TGG | 0.485734 | 1_4:-6619546 | Msa0146860:CDS |
| GTCTTAACCCTCTAGTTCAA+AGG | 0.489092 | 1_4:-6621596 | Msa0146860:five_prime_UTR |
| AGCCATTCAAGAAAGAAATC+TGG | 0.489436 | 1_4:-6619687 | Msa0146860:CDS |
| CCCCGTGAGATTTGACATCC+TGG | 0.492305 | 1_4:+6619497 | None:intergenic |
| TGATTGGAAACCTCAGGACT+TGG | 0.494236 | 1_4:-6619138 | Msa0146860:CDS |
| GGCAAATGGTTTACCTGTTG+CGG | 0.495581 | 1_4:+6619452 | None:intergenic |
| TTCCAGCTGTGCCCAACAAA+AGG | 0.495805 | 1_4:-6618974 | Msa0146860:CDS |
| GAAGCAAATTATGTCAATCA+TGG | 0.497300 | 1_4:-6619723 | Msa0146860:CDS |
| AGTTCAAAGGGAAGGTGAGC+TGG | 0.498029 | 1_4:-6621583 | Msa0146860:five_prime_UTR |
| CTTAGCCGGCTTGCAGCTGA+AGG | 0.500276 | 1_4:-6618900 | Msa0146860:CDS |
| TCCTAATCCCGCATCCAACT+TGG | 0.500713 | 1_4:+6620018 | None:intergenic |
| CGTCCATCAGAATTAACAAA+TGG | 0.501557 | 1_4:+6619965 | None:intergenic |
| TTGAATCATCGTATGCAACT+TGG | 0.503216 | 1_4:+6619108 | None:intergenic |
| AGATAGGCAATACATGATCA+AGG | 0.503374 | 1_4:-6618778 | Msa0146860:three_prime_UTR |
| GACATAATTTGCTTCATGGA+AGG | 0.504898 | 1_4:+6619731 | None:intergenic |
| ATATAAATCTGCTCAGGGAC+AGG | 0.509112 | 1_4:-6619911 | Msa0146860:intron |
| CTTTCAATAAACTACTTAGC+CGG | 0.514461 | 1_4:-6618914 | Msa0146860:CDS |
| TTGTTGGGCACAGCTGGAAG+TGG | 0.517836 | 1_4:+6618978 | None:intergenic |
| GGTATGTCATCATGCCCTCC+AGG | 0.518820 | 1_4:-6619515 | Msa0146860:CDS |
| GGTTGACCTTAAAGACCATT+GGG | 0.521688 | 1_4:-6618859 | Msa0146860:CDS |
| CACCTTCCCTTTGAACTAGA+GGG | 0.524654 | 1_4:+6621589 | None:intergenic |
| TTTGGTCGTTTGGCACGCCT+AGG | 0.528022 | 1_4:+6619338 | None:intergenic |
| GGCTTGATTAATACATCTTG+TGG | 0.531451 | 1_4:-6618574 | Msa0146860:three_prime_UTR |
| CAAGCAGTTAGCAGCCTCAA+AGG | 0.533010 | 1_4:-6619162 | Msa0146860:CDS |
| TGATTGACCAAGTTGGATGC+GGG | 0.537461 | 1_4:-6620025 | Msa0146860:five_prime_UTR |
| AAAGGCTGATTGGAAACCTC+AGG | 0.538629 | 1_4:-6619144 | Msa0146860:CDS |
| CAATTGCAGTATCTCGCTGC+AGG | 0.542654 | 1_4:+6619618 | None:intergenic |
| ACAAATGGGGTAATGGAGGT+TGG | 0.545815 | 1_4:-6619037 | Msa0146860:CDS |
| ATCTAGAAAAGTCAAGAAAG+AGG | 0.546447 | 1_4:-6619276 | Msa0146860:CDS |
| TTGATTGACCAAGTTGGATG+CGG | 0.551411 | 1_4:-6620026 | Msa0146860:five_prime_UTR |
| ATTCCTATAATTAGGATCCA+AGG | 0.551896 | 1_4:-6618679 | Msa0146860:three_prime_UTR |
| TCCAGGATGTCAAATCTCAC+GGG | 0.552910 | 1_4:-6619498 | Msa0146860:CDS |
| CAAGATTCAACTAAAGTACA+AGG | 0.554025 | 1_4:+6618526 | None:intergenic |
| ACATGATCAAGGGTCAGCTA+TGG | 0.554160 | 1_4:-6618767 | Msa0146860:three_prime_UTR |
| TATTGCTTGATTGACCAAGT+TGG | 0.557820 | 1_4:-6620032 | Msa0146860:five_prime_UTR |
| TCACCTTCCCTTTGAACTAG+AGG | 0.558387 | 1_4:+6621588 | None:intergenic |
| CTCCAGGATGTCAAATCTCA+CGG | 0.563255 | 1_4:-6619499 | Msa0146860:CDS |
| TTGATTCGGATTCAGTCGCT+GGG | 0.566827 | 1_4:-6620246 | Msa0146860:five_prime_UTR |
| GCATGATGACATACCACCAT+TGG | 0.567052 | 1_4:+6619523 | None:intergenic |
| GGTCGTTTGGCACGCCTAGG+TGG | 0.570239 | 1_4:+6619341 | None:intergenic |
| TTGATTAATACATCTTGTGG+TGG | 0.577501 | 1_4:-6618571 | Msa0146860:three_prime_UTR |
| CAATGTAAAACATATGTCAC+CGG | 0.578180 | 1_4:-6618650 | Msa0146860:three_prime_UTR |
| AACCCTCTAGTTCAAAGGGA+AGG | 0.582967 | 1_4:-6621591 | Msa0146860:five_prime_UTR |
| AGAAGCTTACGAGAAGTGAA+AGG | 0.585369 | 1_4:+6621996 | None:intergenic |
| CATACCATGCTTGTACATAG+AGG | 0.592266 | 1_4:+6620216 | None:intergenic |
| TGGTTCAATGCCAAGTCCTG+AGG | 0.592965 | 1_4:+6619128 | None:intergenic |
| AGAGCATGCTGGTGCTGGCA+TGG | 0.596415 | 1_4:+6619085 | None:intergenic |
| CCCAACCTCTGAAGAAATGG+GGG | 0.597363 | 1_4:+6619367 | None:intergenic |
| GCTTGAATGGAAGAGTAGTG+AGG | 0.599481 | 1_4:-6619213 | Msa0146860:CDS |
| CATGCCCTTCAGCTGCAAGC+CGG | 0.601437 | 1_4:+6618895 | None:intergenic |
| AAAAGGCATGCTCGAATAGG+TGG | 0.604503 | 1_4:-6618957 | Msa0146860:CDS |
| AAAGACCATTGGGCCAAACA+TGG | 0.604624 | 1_4:-6618849 | Msa0146860:CDS |
| AAGTGGATATACCGATAAAG+TGG | 0.604637 | 1_4:+6618995 | None:intergenic |
| TCTAGAAAAGTCAAGAAAGA+GGG | 0.605111 | 1_4:-6619275 | Msa0146860:CDS |
| AATGGTTTACCTGTTGCGGA+AGG | 0.606017 | 1_4:+6619456 | None:intergenic |
| GAGATACTGCAATTGCGGAA+CGG | 0.606489 | 1_4:-6619610 | Msa0146860:CDS |
| TGCTACAAATGGGGTAATGG+AGG | 0.606890 | 1_4:-6619041 | Msa0146860:CDS |
| TCCCAACCTCTGAAGAAATG+GGG | 0.610433 | 1_4:+6619366 | None:intergenic |
| GATCAATATAAATCTGCTCA+GGG | 0.611740 | 1_4:-6619916 | Msa0146860:CDS |
| GCAGCGAGATACTGCAATTG+CGG | 0.613903 | 1_4:-6619615 | Msa0146860:CDS |
| GAAAATGCTTTGGCCAATGG+TGG | 0.615877 | 1_4:-6619536 | Msa0146860:CDS |
| TAGGCGTGCCAAACGACCAA+AGG | 0.616901 | 1_4:-6619336 | Msa0146860:CDS |
| CAGAGGTTGGGAAACCACCT+AGG | 0.616912 | 1_4:-6619355 | Msa0146860:CDS |
| AGCACTTGCAGAACGTGACA+TGG | 0.620297 | 1_4:-6619645 | Msa0146860:CDS |
| TGAGCTGGTAATCCGGACTT+CGG | 0.623446 | 1_4:-6621568 | Msa0146860:five_prime_UTR |
| TGGACGATCGTGAAAATGGA+AGG | 0.626784 | 1_4:-6619948 | Msa0146860:CDS |
| TTAGCCGGCTTGCAGCTGAA+GGG | 0.630246 | 1_4:-6618899 | Msa0146860:CDS |
| GTTGGATGCGGGATTAGGAG+AGG | 0.637551 | 1_4:-6620014 | Msa0146860:five_prime_UTR |
| CTGAGACAGTGCTACAAATG+GGG | 0.642920 | 1_4:-6619050 | Msa0146860:CDS |
| AGGGCATGATCTCTCACACC+CGG | 0.643910 | 1_4:-6618880 | Msa0146860:CDS |
| ACACCAGTACAAGAGCATGC+TGG | 0.644328 | 1_4:+6619074 | None:intergenic |
| ATAGCCTCTATGTACAAGCA+TGG | 0.646465 | 1_4:-6620220 | Msa0146860:intron |
| GATAGGCAATACATGATCAA+GGG | 0.654247 | 1_4:-6618777 | Msa0146860:three_prime_UTR |
| GTGAGATTTGACATCCTGGA+GGG | 0.655568 | 1_4:+6619501 | None:intergenic |
| CCAGGATGTCAAATCTCACG+GGG | 0.670697 | 1_4:-6619497 | Msa0146860:CDS |
| AATGGTCTTTAAGGTCAACC+GGG | 0.672212 | 1_4:+6618862 | None:intergenic |
| TAATCCGGACTTCGGCTGCG+AGG | 0.676072 | 1_4:-6621560 | Msa0146860:intron |
| ATGGATTCTAAAGTTGAACA+AGG | 0.676747 | 1_4:-6618748 | Msa0146860:three_prime_UTR |
| AAATGCGATTGCCACCACCA+CGG | 0.689345 | 1_4:+6618601 | None:intergenic |
| AGACAAGAAAACAACTACAG+AGG | 0.695090 | 1_4:-6622117 | Msa0146860:five_prime_UTR |
| CGTGAGATTTGACATCCTGG+AGG | 0.739694 | 1_4:+6619500 | None:intergenic |
| GATTCTAAAGTTGAACAAGG+AGG | 0.751080 | 1_4:-6618745 | Msa0146860:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGGTATTATTTTTTT+TGG | - | chr1_4:6618998-6619017 | Msa0146860:CDS | 10.0% |
| !! | ATCTTAAATGAAAGAAAAAA+AGG | + | chr1_4:6620239-6620258 | None:intergenic | 15.0% |
| !! | AGAGGTAAAAAAAAAAAAAG+CGG | - | chr1_4:6618517-6618536 | Msa0146860:three_prime_UTR | 20.0% |
| !! | AAAATGAATAATGTTCTTGT+TGG | + | chr1_4:6618563-6618582 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGATTTCGAAAAT+TGG | - | chr1_4:6618786-6618805 | Msa0146860:three_prime_UTR | 20.0% |
| !!! | TGTTTTTGATTTCGAAAATT+GGG | - | chr1_4:6618787-6618806 | Msa0146860:three_prime_UTR | 20.0% |
| !!! | TTTTTAGAATTGCTCTTTTT+AGG | - | chr1_4:6618983-6619002 | Msa0146860:CDS | 20.0% |
| !!! | ATTATTTTGTAGCTTATTAC+CGG | + | chr1_4:6619620-6619639 | None:intergenic | 20.0% |
| !! | CAATTACACAATACTTAAAA+GGG | + | chr1_4:6619660-6619679 | None:intergenic | 20.0% |
| !! | AAACATTGCATAAATAAATG+AGG | + | chr1_4:6619726-6619745 | None:intergenic | 20.0% |
| !!! | TTATTTATGCAATGTTTTTC+TGG | - | chr1_4:6619729-6619748 | Msa0146860:CDS | 20.0% |
| !!! | AATACAAAGTGTTATCAAAT+AGG | + | chr1_4:6620011-6620030 | None:intergenic | 20.0% |
| !!! | AATTTTTTGAAGAGTTGATT+CGG | - | chr1_4:6620356-6620375 | Msa0146860:intron | 20.0% |
| !! | TAGTTCATTAATTGATATTC+AGG | - | chr1_4:6620548-6620567 | Msa0146860:intron | 20.0% |
| ! | AATAATGTTCTTGTTGGATT+TGG | + | chr1_4:6618557-6618576 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTTCGAAAATTG+GGG | - | chr1_4:6618788-6618807 | Msa0146860:three_prime_UTR | 25.0% |
| ! | TGTCAAAATTGTGAAAATTG+CGG | - | chr1_4:6618847-6618866 | Msa0146860:CDS | 25.0% |
| ! | AACACTAACAAAGGAAAAAA+AGG | + | chr1_4:6619167-6619186 | None:intergenic | 25.0% |
| ! | TAAAACATGAACACTAACAA+AGG | + | chr1_4:6619176-6619195 | None:intergenic | 25.0% |
| ! | TTGTGAAATTGTTGCTATAT+TGG | + | chr1_4:6619304-6619323 | None:intergenic | 25.0% |
| ! | CCAATTACACAATACTTAAA+AGG | + | chr1_4:6619661-6619680 | None:intergenic | 25.0% |
| !!! | CCTTTTAAGTATTGTGTAAT+TGG | - | chr1_4:6619658-6619677 | Msa0146860:CDS | 25.0% |
| ! | ATGATTAGGATAGCATAAAA+TGG | + | chr1_4:6619755-6619774 | None:intergenic | 25.0% |
| !! | TATGCTATCCTAATCATTTT+TGG | - | chr1_4:6619758-6619777 | Msa0146860:CDS | 25.0% |
| ! | TGTTTGATCCAAAAATGATT+AGG | + | chr1_4:6619769-6619788 | None:intergenic | 25.0% |
| !!! | AATCATTTTTGGATCAAACA+AGG | - | chr1_4:6619769-6619788 | Msa0146860:intron | 25.0% |
| ! | AAAGTTCTGTTCAAACAATA+AGG | + | chr1_4:6619865-6619884 | None:intergenic | 25.0% |
| ! | TTAGCAGTATTGTCAAATAT+CGG | + | chr1_4:6620100-6620119 | None:intergenic | 25.0% |
| !!! | TTAAATTTATTTCTGAGCAG+AGG | + | chr1_4:6620744-6620763 | None:intergenic | 25.0% |
| !! | TTCTTGACTTTTCTAGATTT+TGG | + | chr1_4:6621338-6621357 | None:intergenic | 25.0% |
| !! | AATGTGTCATTCCTATAATT+AGG | - | chr1_4:6621929-6621948 | Msa0146860:intron | 25.0% |
| !! | TCTTGTCTTGTTTCTTACTT+GGG | + | chr1_4:6618487-6618506 | None:intergenic | 30.0% |
| !! | TTCTTGTCTTGTTTCTTACT+TGG | + | chr1_4:6618488-6618507 | None:intergenic | 30.0% |
| TTGACAACAACAAAAACACA+CGG | + | chr1_4:6618833-6618852 | None:intergenic | 30.0% | |
| ! | AATATCACCTTTTATGTGTG+TGG | - | chr1_4:6619205-6619224 | Msa0146860:CDS | 30.0% |
| ! | ATATCACCTTTTATGTGTGT+GGG | - | chr1_4:6619206-6619225 | Msa0146860:CDS | 30.0% |
| AAACATCAACCAACAAATTG+TGG | + | chr1_4:6619476-6619495 | None:intergenic | 30.0% | |
| GTTAACTTATTGACCTTAGA+TGG | - | chr1_4:6619591-6619610 | Msa0146860:CDS | 30.0% | |
| TGTTCAAACAATAAGGAAGA+GGG | + | chr1_4:6619858-6619877 | None:intergenic | 30.0% | |
| ! | TTTGAACAGAACTTTTTGCA+TGG | - | chr1_4:6619870-6619889 | Msa0146860:intron | 30.0% |
| ! | AAATATCGGCTATAGATTAG+CGG | + | chr1_4:6620086-6620105 | None:intergenic | 30.0% |
| CAAAGGCAATTTGAAAATCA+GGG | + | chr1_4:6620182-6620201 | None:intergenic | 30.0% | |
| ACAAAGGCAATTTGAAAATC+AGG | + | chr1_4:6620183-6620202 | None:intergenic | 30.0% | |
| !! | ATTCGAGTTTTTATCATAGC+TGG | - | chr1_4:6620276-6620295 | Msa0146860:intron | 30.0% |
| ! | CAGAAAAATTTGATTCGAGT+TGG | + | chr1_4:6620329-6620348 | None:intergenic | 30.0% |
| ! | TCGAATCAAATTTTTCTGCA+GGG | - | chr1_4:6620331-6620350 | Msa0146860:intron | 30.0% |
| ACAACACTAACAAAGAATAG+AGG | + | chr1_4:6620443-6620462 | None:intergenic | 30.0% | |
| CTATTCTTTGTTAGTGTTGT+TGG | - | chr1_4:6620443-6620462 | Msa0146860:intron | 30.0% | |
| ! | CTACCATTTGTTAATTCTGA+TGG | - | chr1_4:6620648-6620667 | Msa0146860:intron | 30.0% |
| AGATCAATATAAATCTGCTC+AGG | - | chr1_4:6620699-6620718 | Msa0146860:intron | 30.0% | |
| GATCAATATAAATCTGCTCA+GGG | - | chr1_4:6620700-6620719 | Msa0146860:intron | 30.0% | |
| !! | TCTAAAAATTGCTTTTGCAG+TGG | - | chr1_4:6620838-6620857 | Msa0146860:intron | 30.0% |
| !! | GATTGACATAATTTGCTTCA+TGG | + | chr1_4:6620892-6620911 | None:intergenic | 30.0% |
| GAAGCAAATTATGTCAATCA+TGG | - | chr1_4:6620893-6620912 | Msa0146860:intron | 30.0% | |
| GTAAACCATTTGCCTAATAT+GGG | - | chr1_4:6621173-6621192 | Msa0146860:intron | 30.0% | |
| TAAGAAGAATCACCCATATT+AGG | + | chr1_4:6621188-6621207 | None:intergenic | 30.0% | |
| AATATGGGTGATTCTTCTTA+CGG | - | chr1_4:6621188-6621207 | Msa0146860:intron | 30.0% | |
| ATCTAGAAAAGTCAAGAAAG+AGG | - | chr1_4:6621340-6621359 | Msa0146860:intron | 30.0% | |
| TCTAGAAAAGTCAAGAAAGA+GGG | - | chr1_4:6621341-6621360 | Msa0146860:intron | 30.0% | |
| AGTAGTGAGGAAATGATAAA+TGG | - | chr1_4:6621416-6621435 | Msa0146860:intron | 30.0% | |
| CTTTCAATAAACTACTTAGC+CGG | - | chr1_4:6621702-6621721 | Msa0146860:intron | 30.0% | |
| !! | ATGGATTCTAAAGTTGAACA+AGG | - | chr1_4:6621868-6621887 | Msa0146860:intron | 30.0% |
| ATTCCTATAATTAGGATCCA+AGG | - | chr1_4:6621937-6621956 | Msa0146860:intron | 30.0% | |
| TTTCCTTGGATCCTAATTAT+AGG | + | chr1_4:6621943-6621962 | None:intergenic | 30.0% | |
| ATAATTAGGATCCAAGGAAA+TGG | - | chr1_4:6621943-6621962 | Msa0146860:intron | 30.0% | |
| CAATGTAAAACATATGTCAC+CGG | - | chr1_4:6621966-6621985 | Msa0146860:intron | 30.0% | |
| TTGATTAATACATCTTGTGG+TGG | - | chr1_4:6622045-6622064 | Msa0146860:five_prime_UTR | 30.0% | |
| CAAGATTCAACTAAAGTACA+AGG | + | chr1_4:6622093-6622112 | None:intergenic | 30.0% | |
| ! | TCTTGTTTCTTACTTGGGTA+TGG | + | chr1_4:6618482-6618501 | None:intergenic | 35.0% |
| AGACAAGAAAACAACTACAG+AGG | - | chr1_4:6618499-6618518 | Msa0146860:three_prime_UTR | 35.0% | |
| !! | TATTCATTTTTCTGCTGCGA+AGG | - | chr1_4:6618573-6618592 | Msa0146860:three_prime_UTR | 35.0% |
| CTTTCAACTACAAAGTACGA+AGG | + | chr1_4:6618906-6618925 | None:intergenic | 35.0% | |
| ! | TCTTAACCCTCTAGTTCAAA+GGG | - | chr1_4:6619021-6619040 | Msa0146860:CDS | 35.0% |
| TTACAGCCATAATTCGAACT+CGG | - | chr1_4:6619103-6619122 | Msa0146860:CDS | 35.0% | |
| ACACCAATGTTGTTAACTAG+CGG | + | chr1_4:6619402-6619421 | None:intergenic | 35.0% | |
| CTAGTTAACAACATTGGTGT+GGG | - | chr1_4:6619402-6619421 | Msa0146860:CDS | 35.0% | |
| ACAAATTGTGGCAATAATGG+AGG | + | chr1_4:6619464-6619483 | None:intergenic | 35.0% | |
| CCAACAAATTGTGGCAATAA+TGG | + | chr1_4:6619467-6619486 | None:intergenic | 35.0% | |
| CCATTATTGCCACAATTTGT+TGG | - | chr1_4:6619464-6619483 | Msa0146860:CDS | 35.0% | |
| !!! | GAGATGAAGCTTGTTGTTTT+TGG | - | chr1_4:6619498-6619517 | Msa0146860:CDS | 35.0% |
| ACTGTCTAATTGCTAAGACT+AGG | - | chr1_4:6619539-6619558 | Msa0146860:CDS | 35.0% | |
| TATTGACCTTAGATGGAAAC+CGG | - | chr1_4:6619598-6619617 | Msa0146860:CDS | 35.0% | |
| !! | TTATTACCGGTTTCCATCTA+AGG | + | chr1_4:6619607-6619626 | None:intergenic | 35.0% |
| GTTCAAACAATAAGGAAGAG+GGG | + | chr1_4:6619857-6619876 | None:intergenic | 35.0% | |
| CTGTTCAAACAATAAGGAAG+AGG | + | chr1_4:6619859-6619878 | None:intergenic | 35.0% | |
| TGTTTGTCTCTGTCATTGTT+GGG | - | chr1_4:6619926-6619945 | Msa0146860:CDS | 35.0% | |
| CTGTCAATCATGGAAAATAG+CGG | - | chr1_4:6619955-6619974 | Msa0146860:exon | 35.0% | |
| !! | CGAGAATCAATCACTTTTGT+TGG | + | chr1_4:6620141-6620160 | None:intergenic | 35.0% |
| ! | CTCGAATCAAATTTTTCTGC+AGG | - | chr1_4:6620330-6620349 | Msa0146860:intron | 35.0% |
| AATAGAGGTGGAAAAGGTTA+TGG | + | chr1_4:6620428-6620447 | None:intergenic | 35.0% | |
| ACAAAGAATAGAGGTGGAAA+AGG | + | chr1_4:6620434-6620453 | None:intergenic | 35.0% | |
| ACACTAACAAAGAATAGAGG+TGG | + | chr1_4:6620440-6620459 | None:intergenic | 35.0% | |
| TATTGCTTGATTGACCAAGT+TGG | - | chr1_4:6620584-6620603 | Msa0146860:intron | 35.0% | |
| CGTCCATCAGAATTAACAAA+TGG | + | chr1_4:6620654-6620673 | None:intergenic | 35.0% | |
| TGCTGCATATAAGCCTTAAA+AGG | - | chr1_4:6620793-6620812 | Msa0146860:intron | 35.0% | |
| GCTGCATATAAGCCTTAAAA+GGG | - | chr1_4:6620794-6620813 | Msa0146860:intron | 35.0% | |
| !! | GACATAATTTGCTTCATGGA+AGG | + | chr1_4:6620888-6620907 | None:intergenic | 35.0% |
| AGCCATTCAAGAAAGAAATC+TGG | - | chr1_4:6620929-6620948 | Msa0146860:intron | 35.0% | |
| ! | AGCATTTTCTCGAAACTGAA+GGG | + | chr1_4:6621069-6621088 | None:intergenic | 35.0% |
| ! | AAGCATTTTCTCGAAACTGA+AGG | + | chr1_4:6621070-6621089 | None:intergenic | 35.0% |
| TCAGTTTCGAGAAAATGCTT+TGG | - | chr1_4:6621070-6621089 | Msa0146860:intron | 35.0% | |
| GGTAAACCATTTGCCTAATA+TGG | - | chr1_4:6621172-6621191 | Msa0146860:intron | 35.0% | |
| AATCACCCATATTAGGCAAA+TGG | + | chr1_4:6621181-6621200 | None:intergenic | 35.0% | |
| GAATCAGACTTACTTTCCTT+TGG | + | chr1_4:6621299-6621318 | None:intergenic | 35.0% | |
| !!! | GATTTTGGAGTCTTCTTGTT+AGG | + | chr1_4:6621323-6621342 | None:intergenic | 35.0% |
| TTGAATCATCGTATGCAACT+TGG | + | chr1_4:6621511-6621530 | None:intergenic | 35.0% | |
| TTGCTGTACAACCACTTTAT+CGG | - | chr1_4:6621610-6621629 | Msa0146860:five_prime_UTR | 35.0% | |
| AAGTGGATATACCGATAAAG+TGG | + | chr1_4:6621624-6621643 | None:intergenic | 35.0% | |
| ATAGGTGGTAGAAAAATGAG+TGG | - | chr1_4:6621674-6621693 | Msa0146860:intron | 35.0% | |
| !! | GTATCGATTTGTACCATGTT+TGG | + | chr1_4:6621783-6621802 | None:intergenic | 35.0% |
| TTGATCATGTATTGCCTATC+TGG | + | chr1_4:6621839-6621858 | None:intergenic | 35.0% | |
| AGATAGGCAATACATGATCA+AGG | - | chr1_4:6621838-6621857 | Msa0146860:intron | 35.0% | |
| GATAGGCAATACATGATCAA+GGG | - | chr1_4:6621839-6621858 | Msa0146860:intron | 35.0% | |
| !! | GATTCTAAAGTTGAACAAGG+AGG | - | chr1_4:6621871-6621890 | Msa0146860:intron | 35.0% |
| GTTGAACAAGGAGGAAAATA+AGG | - | chr1_4:6621880-6621899 | Msa0146860:intron | 35.0% | |
| !! | GTTTTACATTGCCATTTCCT+TGG | + | chr1_4:6621957-6621976 | None:intergenic | 35.0% |
| !! | ACCATTTTGACCTGCAAAAA+TGG | - | chr1_4:6621991-6622010 | Msa0146860:intron | 35.0% |
| !! | ACCATTTTTGCAGGTCAAAA+TGG | + | chr1_4:6621995-6622014 | None:intergenic | 35.0% |
| GGCTTGATTAATACATCTTG+TGG | - | chr1_4:6622042-6622061 | Msa0146860:five_prime_UTR | 35.0% | |
| ! | TTTTTCTGCTGCGAAGGATT+AGG | - | chr1_4:6618579-6618598 | Msa0146860:three_prime_UTR | 40.0% |
| ! | TTTTCTGCTGCGAAGGATTA+GGG | - | chr1_4:6618580-6618599 | Msa0146860:three_prime_UTR | 40.0% |
| AGAAGCTTACGAGAAGTGAA+AGG | + | chr1_4:6618623-6618642 | None:intergenic | 40.0% | |
| ! | GTCTTAACCCTCTAGTTCAA+AGG | - | chr1_4:6619020-6619039 | Msa0146860:CDS | 40.0% |
| TACAGCCATAATTCGAACTC+GGG | - | chr1_4:6619104-6619123 | Msa0146860:CDS | 40.0% | |
| TAGAACCCGAGTTCGAATTA+TGG | + | chr1_4:6619112-6619131 | None:intergenic | 40.0% | |
| TTGTACTACATAGCGTATCG+TGG | - | chr1_4:6619328-6619347 | Msa0146860:CDS | 40.0% | |
| ATAGTGGCGCTATTGCATTA+TGG | + | chr1_4:6619377-6619396 | None:intergenic | 40.0% | |
| TTGTTAACTAGCGGCAATAG+TGG | + | chr1_4:6619393-6619412 | None:intergenic | 40.0% | |
| TTGCCGCTAGTTAACAACAT+TGG | - | chr1_4:6619396-6619415 | Msa0146860:CDS | 40.0% | |
| GCTAGTTAACAACATTGGTG+TGG | - | chr1_4:6619401-6619420 | Msa0146860:CDS | 40.0% | |
| ! | CTATCACTGACTGACTGTTA+AGG | - | chr1_4:6619566-6619585 | Msa0146860:CDS | 40.0% |
| CTGTTTGTCTCTGTCATTGT+TGG | - | chr1_4:6619925-6619944 | Msa0146860:CDS | 40.0% | |
| GTTTGTCTCTGTCATTGTTG+GGG | - | chr1_4:6619927-6619946 | Msa0146860:CDS | 40.0% | |
| AGATAACCACTAACTGTGCA+CGG | + | chr1_4:6620208-6620227 | None:intergenic | 40.0% | |
| ATAGCCTCTATGTACAAGCA+TGG | - | chr1_4:6620396-6620415 | Msa0146860:intron | 40.0% | |
| CATACCATGCTTGTACATAG+AGG | + | chr1_4:6620403-6620422 | None:intergenic | 40.0% | |
| ! | TTGATTGACCAAGTTGGATG+CGG | - | chr1_4:6620590-6620609 | Msa0146860:intron | 40.0% |
| ATATAAATCTGCTCAGGGAC+AGG | - | chr1_4:6620705-6620724 | Msa0146860:intron | 40.0% | |
| !!! | GTAGAGAAAGCACCCTTTTA+AGG | + | chr1_4:6620809-6620828 | None:intergenic | 40.0% |
| GGCCAGATTTCTTTCTTGAA+TGG | + | chr1_4:6620934-6620953 | None:intergenic | 40.0% | |
| GGAACGGAATAATGCACTTA+TGG | - | chr1_4:6621022-6621041 | Msa0146860:intron | 40.0% | |
| ! | TTCCCAACCTCTGAAGAAAT+GGG | + | chr1_4:6621254-6621273 | None:intergenic | 40.0% |
| ! | TTTCCCAACCTCTGAAGAAA+TGG | + | chr1_4:6621255-6621274 | None:intergenic | 40.0% |
| CTTACTTTCCTTTGGTCGTT+TGG | + | chr1_4:6621291-6621310 | None:intergenic | 40.0% | |
| ! | CCATTCAAGCTCTTTGTTGT+TGG | + | chr1_4:6621393-6621412 | None:intergenic | 40.0% |
| CCAACAACAAAGAGCTTGAA+TGG | - | chr1_4:6621390-6621409 | Msa0146860:intron | 40.0% | |
| !! | TTCTGAGACAGTGCTACAAA+TGG | - | chr1_4:6621564-6621583 | Msa0146860:five_prime_UTR | 40.0% |
| ! | TCTGAGACAGTGCTACAAAT+GGG | - | chr1_4:6621565-6621584 | Msa0146860:five_prime_UTR | 40.0% |
| ! | ATTCGAGCATGCCTTTTGTT+GGG | + | chr1_4:6621656-6621675 | None:intergenic | 40.0% |
| ! | TATTCGAGCATGCCTTTTGT+TGG | + | chr1_4:6621657-6621676 | None:intergenic | 40.0% |
| ! | AACAAAAGGCATGCTCGAAT+AGG | - | chr1_4:6621656-6621675 | Msa0146860:intron | 40.0% |
| !! | AATGGTCTTTAAGGTCAACC+GGG | + | chr1_4:6621757-6621776 | None:intergenic | 40.0% |
| !! | CAATGGTCTTTAAGGTCAAC+CGG | + | chr1_4:6621758-6621777 | None:intergenic | 40.0% |
| GGTTGACCTTAAAGACCATT+GGG | - | chr1_4:6621757-6621776 | Msa0146860:intron | 40.0% | |
| ! | CGATGCATTTTTCTCCAGAT+AGG | - | chr1_4:6621822-6621841 | Msa0146860:intron | 40.0% |
| TTGCAGGTCAAAATGGTTAC+CGG | + | chr1_4:6621988-6622007 | None:intergenic | 40.0% | |
| TGGTGGCAATCGCATTTAAT+AGG | - | chr1_4:6622021-6622040 | Msa0146860:five_prime_UTR | 40.0% | |
| ! | AACCCTCTAGTTCAAAGGGA+AGG | - | chr1_4:6619025-6619044 | Msa0146860:CDS | 45.0% |
| CACCTTCCCTTTGAACTAGA+GGG | + | chr1_4:6619030-6619049 | None:intergenic | 45.0% | |
| TCACCTTCCCTTTGAACTAG+AGG | + | chr1_4:6619031-6619050 | None:intergenic | 45.0% | |
| CACTGACCCACACACATAAA+AGG | + | chr1_4:6619215-6619234 | None:intergenic | 45.0% | |
| GACAGTTCTACACACAACGA+AGG | + | chr1_4:6619525-6619544 | None:intergenic | 45.0% | |
| CTAGAGCAATTGTGCTAGCA+GGG | + | chr1_4:6619804-6619823 | None:intergenic | 45.0% | |
| ACTAGAGCAATTGTGCTAGC+AGG | + | chr1_4:6619805-6619824 | None:intergenic | 45.0% | |
| GAATCTGAACAAAGCGCGAT+AGG | + | chr1_4:6620040-6620059 | None:intergenic | 45.0% | |
| !! | TTGATTCGGATTCAGTCGCT+GGG | - | chr1_4:6620370-6620389 | Msa0146860:intron | 45.0% |
| ! | TGATTGACCAAGTTGGATGC+GGG | - | chr1_4:6620591-6620610 | Msa0146860:intron | 45.0% |
| ! | CTGATGGACGATCGTGAAAA+TGG | - | chr1_4:6620664-6620683 | Msa0146860:intron | 45.0% |
| TGGACGATCGTGAAAATGGA+AGG | - | chr1_4:6620668-6620687 | Msa0146860:intron | 45.0% | |
| !! | TGCAAGTGCTGCCTTTTTCT+CGG | + | chr1_4:6620961-6620980 | None:intergenic | 45.0% |
| GAGATACTGCAATTGCGGAA+CGG | - | chr1_4:6621006-6621025 | Msa0146860:intron | 45.0% | |
| CGAGAAAATGCTTTGGCCAA+TGG | - | chr1_4:6621077-6621096 | Msa0146860:intron | 45.0% | |
| GAAAATGCTTTGGCCAATGG+TGG | - | chr1_4:6621080-6621099 | Msa0146860:intron | 45.0% | |
| GCATGATGACATACCACCAT+TGG | + | chr1_4:6621096-6621115 | None:intergenic | 45.0% | |
| GTGAGATTTGACATCCTGGA+GGG | + | chr1_4:6621118-6621137 | None:intergenic | 45.0% | |
| CTCCAGGATGTCAAATCTCA+CGG | - | chr1_4:6621117-6621136 | Msa0146860:intron | 45.0% | |
| TCCAGGATGTCAAATCTCAC+GGG | - | chr1_4:6621118-6621137 | Msa0146860:intron | 45.0% | |
| TATACATCACCTTCCGCAAC+AGG | - | chr1_4:6621151-6621170 | Msa0146860:intron | 45.0% | |
| AATGGTTTACCTGTTGCGGA+AGG | + | chr1_4:6621163-6621182 | None:intergenic | 45.0% | |
| GGCAAATGGTTTACCTGTTG+CGG | + | chr1_4:6621167-6621186 | None:intergenic | 45.0% | |
| ! | TCCCAACCTCTGAAGAAATG+GGG | + | chr1_4:6621253-6621272 | None:intergenic | 45.0% |
| GCTTGAATGGAAGAGTAGTG+AGG | - | chr1_4:6621403-6621422 | Msa0146860:intron | 45.0% | |
| AGGTTTCCAATCAGCCTTTG+AGG | + | chr1_4:6621471-6621490 | None:intergenic | 45.0% | |
| AAAGGCTGATTGGAAACCTC+AGG | - | chr1_4:6621472-6621491 | Msa0146860:intron | 45.0% | |
| TGATTGGAAACCTCAGGACT+TGG | - | chr1_4:6621478-6621497 | Msa0146860:intron | 45.0% | |
| CTGAGACAGTGCTACAAATG+GGG | - | chr1_4:6621566-6621585 | Msa0146860:five_prime_UTR | 45.0% | |
| CAGTGCTACAAATGGGGTAA+TGG | - | chr1_4:6621572-6621591 | Msa0146860:five_prime_UTR | 45.0% | |
| ! | TGCTACAAATGGGGTAATGG+AGG | - | chr1_4:6621575-6621594 | Msa0146860:five_prime_UTR | 45.0% |
| !! | ACAAATGGGGTAATGGAGGT+TGG | - | chr1_4:6621579-6621598 | Msa0146860:five_prime_UTR | 45.0% |
| ! | AAAAGGCATGCTCGAATAGG+TGG | - | chr1_4:6621659-6621678 | Msa0146860:intron | 45.0% |
| CGGTTGACCTTAAAGACCAT+TGG | - | chr1_4:6621756-6621775 | Msa0146860:intron | 45.0% | |
| GTTTGGCCCAATGGTCTTTA+AGG | + | chr1_4:6621766-6621785 | None:intergenic | 45.0% | |
| AAAGACCATTGGGCCAAACA+TGG | - | chr1_4:6621767-6621786 | Msa0146860:intron | 45.0% | |
| TTGTACCATGTTTGGCCCAA+TGG | + | chr1_4:6621775-6621794 | None:intergenic | 45.0% | |
| ACATGATCAAGGGTCAGCTA+TGG | - | chr1_4:6621849-6621868 | Msa0146860:intron | 45.0% | |
| AGTTCAAAGGGAAGGTGAGC+TGG | - | chr1_4:6619033-6619052 | Msa0146860:CDS | 50.0% | |
| TGAGCTGGTAATCCGGACTT+CGG | - | chr1_4:6619048-6619067 | Msa0146860:CDS | 50.0% | |
| AATTGTGCTAGCAGGGCAAG+GGG | + | chr1_4:6619797-6619816 | None:intergenic | 50.0% | |
| CAATTGTGCTAGCAGGGCAA+GGG | + | chr1_4:6619798-6619817 | None:intergenic | 50.0% | |
| TGGGGCAATGCTGTCAATCA+TGG | - | chr1_4:6619945-6619964 | Msa0146860:CDS | 50.0% | |
| CTAACTGTGCACGGAGACAA+AGG | + | chr1_4:6620199-6620218 | None:intergenic | 50.0% | |
| TTGTCTCCGTGCACAGTTAG+TGG | - | chr1_4:6620199-6620218 | Msa0146860:intron | 50.0% | |
| !! | GTTGATTCGGATTCAGTCGC+TGG | - | chr1_4:6620369-6620388 | Msa0146860:intron | 50.0% |
| ACAAATTTCCTCCACCCTCC+AGG | - | chr1_4:6620469-6620488 | Msa0146860:intron | 50.0% | |
| CTTTCCTCCTGTGTTCCTTG+AGG | + | chr1_4:6620495-6620514 | None:intergenic | 50.0% | |
| ! | ACCAAGTTGGATGCGGGATT+AGG | - | chr1_4:6620597-6620616 | Msa0146860:intron | 50.0% |
| TCCTAATCCCGCATCCAACT+TGG | + | chr1_4:6620601-6620620 | None:intergenic | 50.0% | |
| ! | TGCTGCCTTTTTCTCGGAGA+GGG | + | chr1_4:6620955-6620974 | None:intergenic | 50.0% |
| AGCACTTGCAGAACGTGACA+TGG | - | chr1_4:6620971-6620990 | Msa0146860:intron | 50.0% | |
| CAATTGCAGTATCTCGCTGC+AGG | + | chr1_4:6621001-6621020 | None:intergenic | 50.0% | |
| GCAGCGAGATACTGCAATTG+CGG | - | chr1_4:6621001-6621020 | Msa0146860:intron | 50.0% | |
| CGTGAGATTTGACATCCTGG+AGG | + | chr1_4:6621119-6621138 | None:intergenic | 50.0% | |
| CCAGGATGTCAAATCTCACG+GGG | - | chr1_4:6621119-6621138 | Msa0146860:intron | 50.0% | |
| ! | CCCAACCTCTGAAGAAATGG+GGG | + | chr1_4:6621252-6621271 | None:intergenic | 50.0% |
| CCCCCATTTCTTCAGAGGTT+GGG | - | chr1_4:6621249-6621268 | Msa0146860:intron | 50.0% | |
| CAAGCAGTTAGCAGCCTCAA+AGG | - | chr1_4:6621454-6621473 | Msa0146860:intron | 50.0% | |
| TAGCAGCCTCAAAGGCTGAT+TGG | - | chr1_4:6621462-6621481 | Msa0146860:intron | 50.0% | |
| TGGTTCAATGCCAAGTCCTG+AGG | + | chr1_4:6621491-6621510 | None:intergenic | 50.0% | |
| ! | ACACCAGTACAAGAGCATGC+TGG | + | chr1_4:6621545-6621564 | None:intergenic | 50.0% |
| TTCCAGCTGTGCCCAACAAA+AGG | - | chr1_4:6621642-6621661 | Msa0146860:intron | 50.0% | |
| TGACCTGCAAAAATGGTCCG+TGG | - | chr1_4:6621998-6622017 | Msa0146860:intron | 50.0% | |
| AAATGCGATTGCCACCACCA+CGG | + | chr1_4:6622018-6622037 | None:intergenic | 50.0% | |
| GGGAAGGTGAGCTGGTAATC+CGG | - | chr1_4:6619041-6619060 | Msa0146860:CDS | 55.0% | |
| GCAATTGTGCTAGCAGGGCA+AGG | + | chr1_4:6619799-6619818 | None:intergenic | 55.0% | |
| TGTGTTCCTTGAGGCCTGGA+GGG | + | chr1_4:6620486-6620505 | None:intergenic | 55.0% | |
| GTTGGATGCGGGATTAGGAG+AGG | - | chr1_4:6620602-6620621 | Msa0146860:intron | 55.0% | |
| TCTGGCCCTCTCCGAGAAAA+AGG | - | chr1_4:6620947-6620966 | Msa0146860:intron | 55.0% | |
| ! | GTGCTGCCTTTTTCTCGGAG+AGG | + | chr1_4:6620956-6620975 | None:intergenic | 55.0% |
| GGTATGTCATCATGCCCTCC+AGG | - | chr1_4:6621101-6621120 | Msa0146860:intron | 55.0% | |
| CCCCGTGAGATTTGACATCC+TGG | + | chr1_4:6621122-6621141 | None:intergenic | 55.0% | |
| CTGAAGAAATGGGGGCTGCT+GGG | + | chr1_4:6621244-6621263 | None:intergenic | 55.0% | |
| TCTGAAGAAATGGGGGCTGC+TGG | + | chr1_4:6621245-6621264 | None:intergenic | 55.0% | |
| AGCAGCCCCCATTTCTTCAG+AGG | - | chr1_4:6621244-6621263 | Msa0146860:intron | 55.0% | |
| GCCCCCATTTCTTCAGAGGT+TGG | - | chr1_4:6621248-6621267 | Msa0146860:intron | 55.0% | |
| CAGAGGTTGGGAAACCACCT+AGG | - | chr1_4:6621261-6621280 | Msa0146860:intron | 55.0% | |
| TTTGGTCGTTTGGCACGCCT+AGG | + | chr1_4:6621281-6621300 | None:intergenic | 55.0% | |
| TAGGCGTGCCAAACGACCAA+AGG | - | chr1_4:6621280-6621299 | Msa0146860:intron | 55.0% | |
| ! | GTACAAGAGCATGCTGGTGC+TGG | + | chr1_4:6621539-6621558 | None:intergenic | 55.0% |
| GCACCAGCATGCTCTTGTAC+TGG | - | chr1_4:6621539-6621558 | Msa0146860:intron | 55.0% | |
| TTGTTGGGCACAGCTGGAAG+TGG | + | chr1_4:6621641-6621660 | None:intergenic | 55.0% | |
| ! | TGCCTTTTGTTGGGCACAGC+TGG | + | chr1_4:6621647-6621666 | None:intergenic | 55.0% |
| !! | TTAGCCGGCTTGCAGCTGAA+GGG | - | chr1_4:6621717-6621736 | Msa0146860:intron | 55.0% |
| AGGGCATGATCTCTCACACC+CGG | - | chr1_4:6621736-6621755 | Msa0146860:intron | 55.0% | |
| !! | CCACCACGGACCATTTTTGC+AGG | + | chr1_4:6622004-6622023 | None:intergenic | 55.0% |
| CCTGCAAAAATGGTCCGTGG+TGG | - | chr1_4:6622001-6622020 | Msa0146860:intron | 55.0% | |
| GCAAAAATGGTCCGTGGTGG+TGG | - | chr1_4:6622004-6622023 | Msa0146860:intron | 55.0% | |
| TAATCCGGACTTCGGCTGCG+AGG | - | chr1_4:6619056-6619075 | Msa0146860:CDS | 60.0% | |
| CTAACCTCGCAGCCGAAGTC+CGG | + | chr1_4:6619063-6619082 | None:intergenic | 60.0% | |
| CTGTGTTCCTTGAGGCCTGG+AGG | + | chr1_4:6620487-6620506 | None:intergenic | 60.0% | |
| CTCCAGGCCTCAAGGAACAC+AGG | - | chr1_4:6620485-6620504 | Msa0146860:intron | 60.0% | |
| CTCCTGTGTTCCTTGAGGCC+TGG | + | chr1_4:6620490-6620509 | None:intergenic | 60.0% | |
| CAGGCCTCAAGGAACACAGG+AGG | - | chr1_4:6620488-6620507 | Msa0146860:intron | 60.0% | |
| AGAAATGGGGGCTGCTGGGA+GGG | + | chr1_4:6621240-6621259 | None:intergenic | 60.0% | |
| AAGAAATGGGGGCTGCTGGG+AGG | + | chr1_4:6621241-6621260 | None:intergenic | 60.0% | |
| !! | AGAGCATGCTGGTGCTGGCA+TGG | + | chr1_4:6621534-6621553 | None:intergenic | 60.0% |
| !! | CTTAGCCGGCTTGCAGCTGA+AGG | - | chr1_4:6621716-6621735 | Msa0146860:intron | 60.0% |
| CATGCCCTTCAGCTGCAAGC+CGG | + | chr1_4:6621724-6621743 | None:intergenic | 60.0% | |
| GTTCCTTGAGGCCTGGAGGG+TGG | + | chr1_4:6620483-6620502 | None:intergenic | 65.0% | |
| GGTCGTTTGGCACGCCTAGG+TGG | + | chr1_4:6621278-6621297 | None:intergenic | 65.0% | |
| CCTTGAGGCCTGGAGGGTGG+AGG | + | chr1_4:6620480-6620499 | None:intergenic | 70.0% | |
| CCTCCACCCTCCAGGCCTCA+AGG | - | chr1_4:6620477-6620496 | Msa0146860:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6618451 | 6622187 | 6618451 | ID=Msa0146860;Name=Msa0146860 |
| chr1_4 | mRNA | 6618451 | 6622187 | 6618451 | ID=Msa0146860-mRNA-1;Parent=Msa0146860;Name=Msa0146860-mRNA-1;_AED=0.03;_eAED=0.03;_QI=418|1|1|1|0.25|0.2|5|370|339 |
| chr1_4 | exon | 6618451 | 6619780 | 6618451 | ID=Msa0146860-mRNA-1:exon:2904;Parent=Msa0146860-mRNA-1 |
| chr1_4 | exon | 6619912 | 6620068 | 6619912 | ID=Msa0146860-mRNA-1:exon:2903;Parent=Msa0146860-mRNA-1 |
| chr1_4 | exon | 6620221 | 6620286 | 6620221 | ID=Msa0146860-mRNA-1:exon:2902;Parent=Msa0146860-mRNA-1 |
| chr1_4 | exon | 6621561 | 6621633 | 6621561 | ID=Msa0146860-mRNA-1:exon:2901;Parent=Msa0146860-mRNA-1 |
| chr1_4 | exon | 6622006 | 6622187 | 6622006 | ID=Msa0146860-mRNA-1:exon:2900;Parent=Msa0146860-mRNA-1 |
| chr1_4 | five_prime_UTR | 6622006 | 6622187 | 6622006 | ID=Msa0146860-mRNA-1:five_prime_utr;Parent=Msa0146860-mRNA-1 |
| chr1_4 | five_prime_UTR | 6621561 | 6621633 | 6621561 | ID=Msa0146860-mRNA-1:five_prime_utr;Parent=Msa0146860-mRNA-1 |
| chr1_4 | five_prime_UTR | 6620221 | 6620286 | 6620221 | ID=Msa0146860-mRNA-1:five_prime_utr;Parent=Msa0146860-mRNA-1 |
| chr1_4 | five_prime_UTR | 6619972 | 6620068 | 6619972 | ID=Msa0146860-mRNA-1:five_prime_utr;Parent=Msa0146860-mRNA-1 |
| chr1_4 | CDS | 6619912 | 6619971 | 6619912 | ID=Msa0146860-mRNA-1:cds;Parent=Msa0146860-mRNA-1 |
| chr1_4 | CDS | 6618821 | 6619780 | 6618821 | ID=Msa0146860-mRNA-1:cds;Parent=Msa0146860-mRNA-1 |
| chr1_4 | three_prime_UTR | 6618451 | 6618820 | 6618451 | ID=Msa0146860-mRNA-1:three_prime_utr;Parent=Msa0146860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
