AlfalfaGEDB | Msa0147430

M. sativa cultivar zhongmu-4 / Msa0147430

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0147430	XP_003589511.1	96.863	1020	32	0	1	1020	1	1020	0.0	2026

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0147430	G7I7R0	96.863	1020	32	0	1	1020	1	1020	0.0	2026

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TFs/TRs:

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Gene ID	Type	Classification
Msa0147430	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0147430	MtrunA17_Chr1g0156791	96.863	1020	32	0	1	1020	1	1020	0.0	2026
Msa0147430	MtrunA17_Chr6g0451341	29.842	506	228	29	599	1020	1127	1589	2.15e-16	84.7
Msa0147430	MtrunA17_Chr6g0451341	34.667	150	90	5	1	148	254	397	4.34e-14	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0147430	AT4G24200.2	39.655	580	289	23	472	1020	451	1000	1.71e-71	257
Msa0147430	AT4G24200.1	39.655	580	289	23	472	1020	451	1000	1.71e-71	257
Msa0147430	AT3G48060.1	27.976	504	237	25	599	1007	1135	1607	1.96e-15	82.0
Msa0147430	AT3G48060.3	27.976	504	237	25	599	1007	1135	1607	1.96e-15	82.0
Msa0147430	AT3G48060.2	27.976	504	237	25	599	1007	1136	1608	1.99e-15	82.0
Msa0147430	AT3G48050.1	27.843	510	232	27	599	1007	1133	1607	2.92e-15	81.6
Msa0147430	AT3G48050.2	27.843	510	232	27	599	1007	1133	1607	2.92e-15	81.6

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Find 252 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATCAGAGCCATTTG+AGG	0.484474	1_4:+7388980	None:intergenic
AAACAAATTGGTGAATCTTC+AGG	0.355173	1_4:-7388081	Msa0147430:CDS
AAACTGATTTACTGGACCAA+GGG	0.555008	1_4:-7387828	Msa0147430:CDS
AAACTTCCTTGTTTCGGTAC+AGG	0.423549	1_4:+7389383	None:intergenic
AAAGAAGATTCAGGCACTAT+TGG	0.361886	1_4:+7389197	None:intergenic
AAAGCTCAGAAGGTGGAACG+AGG	0.698086	1_4:-7388647	Msa0147430:CDS
AAAGCTTCAGTGGAGGAAGA+AGG	0.562681	1_4:-7389035	Msa0147430:CDS
AAAGGCCCTCCAGAGAAATT+AGG	0.368746	1_4:-7389293	Msa0147430:CDS
AAAGTGAATTGACATCGTCT+GGG	0.640193	1_4:-7389418	Msa0147430:CDS
AAATCAATGTTTCGAACTGA+CGG	0.562322	1_4:+7387871	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAAAACAGTAGTAAGA+TGG	+	chr1_4:7387875-7387894	None:intergenic	30.0%
AAATGACTTATCAATGAAGG+AGG	-	chr1_4:7388007-7388026	Msa0147430:CDS	30.0%
AACTCTTGTCAATAATGTTG+GGG	+	chr1_4:7388409-7388428	None:intergenic	30.0%
GAACTCTTGTCAATAATGTT+GGG	+	chr1_4:7388410-7388429	None:intergenic	30.0%
AGAACTCTTGTCAATAATGT+TGG	+	chr1_4:7388411-7388430	None:intergenic	30.0%
ACTCTGATATTTCCAAACAA+AGG	-	chr1_4:7389182-7389201	Msa0147430:CDS	30.0%
AAGAAAATCTTGCCTTTGTT+TGG	+	chr1_4:7389197-7389216	None:intergenic	30.0%
AAACAAATTGGTGAATCTTC+AGG	-	chr1_4:7389259-7389278	Msa0147430:CDS	30.0%
AAATCAATGTTTCGAACTGA+CGG	+	chr1_4:7389472-7389491	None:intergenic	30.0%
ACTTTGACTGAGATGAAAGA+TGG	-	chr1_4:7387171-7387190	Msa0147430:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	7387150	7390212	7387150	ID=Msa0147430;Name=Msa0147430
chr1_4	mRNA	7387150	7390212	7387150	ID=Msa0147430-mRNA-1;Parent=Msa0147430;Name=Msa0147430-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1020
chr1_4	exon	7387150	7390212	7387150	ID=Msa0147430-mRNA-1:exon:3238;Parent=Msa0147430-mRNA-1
chr1_4	CDS	7387150	7390212	7387150	ID=Msa0147430-mRNA-1:cds;Parent=Msa0147430-mRNA-1

Gene Sequence

>Msa0147430

ATGACTCTTGAAGACTTCTTTACTTTGACTGAGATGAAAGATGGGCTCACAACCCCTTCTCGAGTGCAGGAGTTGGTCTCTGTGATGAAGAAGGAGCAAGACAGTATTGTGAAGAACACTGGCGATGCAATAAGACAATGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGACCTTTTTATTCAATTAGAAGGACCGTGGTTCATTGATAGATGGTTAAATGATGCTCAAAAATTGGGTGGTGGTACAAATGATAGTGTCATGGAAGAGTCAATTACTGCAATGTTACGAGCAGTTGAAAAGCTATATCAAGACAGTGAGAAGCTAATTTCATCAGGAATGTGGGCCACTGTAAGTAACCTTCTTGGTCATCACAGCTCCAAGGTTCAAGATAGAGCAAGAGCACTATTTGACAAGTGGAAAGAAGTTGGAAATGGAGATGCTAAGTCTCATGATATGGATACTGGTCAAAGAAACCATATGATTGATAAGAATCTCAAGGAGGAAGGCCGGTTGTCTTCAGTGAACGGGGCTAGTAATGACAATGTTCATGTGTTGCGACTTGATGGGGGTGAGAAGTCTATACTGAGAAGCTCAGATACTCAGATACCAGATAAGGCTGCTAATGTTAAGAAAGAGAGTTCTGACAATGCACATCAGTCCTCTGCAAGTTTGAATTGTGAAGAGCTCAAAGAGAGATCAAACCATCTTACTACTGTTTTGACTTCTGTTCAAGAAAATGTTTCCTCAAGTGAAAGTGAATTGACATCGTCTGGGATCTGCAACTTACCTGTACCGAAACAAGGAAGTTTCAAAGATCAGCCTGATGATTTACAGTTAAATGACTTATCAATGAAGGAGGAGCAGGAACTAAATGATAAAGGCCCTCCAGAGAAATTAGGAGCACCAATAAATCCTAAGCCTGAATCTGATTCTGTTGGTGCTAGTGAAGCACAAGTTAAGCCTGTGCCTGCACCAATAGTGCCTGAATCTTCTTTGGAACATGATGTCAAAAGCAGTGAAGTTAGTATTTGTGATAAAGTAATAGTTTCTGGTAGCATGAAAACACCTGCCTCTGATAAAATGAGTGTGGTGGTTGGTGCCAGAGCCACAGATTCTAGCAATCCACAACTATCTAAAGCTTCAGTGGAGGAAGAAGGCAACAGCCAAGTTTCTAATCACGGCGACGATACCTCAAATGGCTCTGATTCTTTTAAACAAAGAAAAGATCCGACAAGCCCCAACATTATTGACAAGAGTTCTGACATGGAACTTGATTATGGTATTGTTGATGCTTTAGATGTTACTCGACAAGTTGCTGAGGAAGTTACTCAAGTTTCTGATCAAGATAATGATACCTCAAATAGTTCTGATTCCTTCAAACAGAGCAAAGTTTCCAGAAGCGCTAACATTGTGACCAAGAATTCTGAAATTGATCTTGACTATGGCATGGTTGATGCTTTACAAGTCGCTAGACAAGTTGCTGAGGAAGTTGAGAGAGAAATCAATAACTCTTCTTCAGAGAAAAGCTCAGAAGGTGGAACGAGGCAAGCTGGCAGCGCGGAATCTGTTGGTAAAAATGATGACCTTGCATGTTCCCTACCCGAGGTGTCATCCAGACAAAGCAACTCCGCTGAAGCATGTCCTGAGGAAAGGCATATGAATGTTTCAGATGATGTTGTAGCTGAGCCAGAATGCATCCCTGACTTGGAGTATTCGCAGTTGACTGAAGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTTTGCACCTTTGATCTTAATGAAGAATATGGTTCTGATGATATGAATGTTTCTGCAAATACCATATCTACAACACCGATACCTGTTGTCTCTGCTTCAAAACCTGCAGAGACTTCAGGATTGCCAACAGCCCCTCTACAGTTTGAAGGAACGCTTGGATGGAAAGGGTCCGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATGCTGATAATCAGAAGAATGTTTCTGCTGGTGGGAACTCTGATATTTCCAAACAAAGGCAAGATTTTCTTGATTTTGATCTGAATGTGGCTGGGGGTGAAGATGAACTGGCAAAACAAATTGGTGAATCTTCAGGCTTGCCTTCTGGGCAATCATCAGTGGAACATAGCCCTAAAAGATCAAAGAGATTTGAATTAGATTTGAATAGTATTGGTGATGATGGTGATACCCAACCTTCAGATCAGAGGATGGAGGGGCAGCTCTTCTTTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCATCATCATCGTCAATGCAGCCGTCAGTTCGAAACATTGATTTGAATGATAGACCATACTTTCAAACTGATTTACTGGACCAAGGGCCTACCAAATCTTCTTCAAGTATTGAAGTATATGGACTTTCCAAATCAGATGCTCCTGCAATATCGATTTTGGGGGCCAAGGTGGAAGTCGGTAGAAAAGAGCATGTTCCTCAAATTTGGTCTTTGCCAAATGGCAAGGCTGTTGAGCCTGCAGTAGATCTTACAATGATGCCAGGAGCTGGTGGCGTTTCAGGGATGGGCCCTGCGGTATCCTACAATCATTCAACTTTTTTGGGATATAATGGACTGACATCAATGCCCCCTTTGTCTTTTTCGCCAGCCGCGTATGGATCAGGTGGTACAGTTCCTTACATGGTGGACTCAAGAGGAGCTCCGGTAGTACCTCAAGTTGGGGGATCTTCCTCAAATGTCCTATCATCTTACGCTCAGCCCCCATATATTATGAGCATGGCTGGTACACAGCTTGGTTTAAACGGTGTTGGACCTTCCCGTCCCAACTTTGATCTTAACTCGGGTTTCATTATTGATGGCGGGAATAGAGATGCATTGACTGCAAGGCCGTTTTTCTTTCCTGGTCAGAACAGAGCTATGGAAGATAGGACCCTTCAACAATCCTCAAGTTCAGGGGTTGGTGGCAAAAGAAAAGAACCAGATGGTAGCGGTTGGGAAACATATCCATTTGGCTACAAACATCAGCAACAACCTCCGTGGAAGTAG

Protein sequence

>Msa0147430

MTLEDFFTLTEMKDGLTTPSRVQELVSVMKKEQDSIVKNTGDAIRQWAAVASTIAATENKDCLDLFIQLEGPWFIDRWLNDAQKLGGGTNDSVMEESITAMLRAVEKLYQDSEKLISSGMWATVSNLLGHHSSKVQDRARALFDKWKEVGNGDAKSHDMDTGQRNHMIDKNLKEEGRLSSVNGASNDNVHVLRLDGGEKSILRSSDTQIPDKAANVKKESSDNAHQSSASLNCEELKERSNHLTTVLTSVQENVSSSESELTSSGICNLPVPKQGSFKDQPDDLQLNDLSMKEEQELNDKGPPEKLGAPINPKPESDSVGASEAQVKPVPAPIVPESSLEHDVKSSEVSICDKVIVSGSMKTPASDKMSVVVGARATDSSNPQLSKASVEEEGNSQVSNHGDDTSNGSDSFKQRKDPTSPNIIDKSSDMELDYGIVDALDVTRQVAEEVTQVSDQDNDTSNSSDSFKQSKVSRSANIVTKNSEIDLDYGMVDALQVARQVAEEVEREINNSSSEKSSEGGTRQAGSAESVGKNDDLACSLPEVSSRQSNSAEACPEERHMNVSDDVVAEPECIPDLEYSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDMNVSANTISTTPIPVVSASKPAETSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKNADNQKNVSAGGNSDISKQRQDFLDFDLNVAGGEDELAKQIGESSGLPSGQSSVEHSPKRSKRFELDLNSIGDDGDTQPSDQRMEGQLFFGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLLDQGPTKSSSSIEVYGLSKSDAPAISILGAKVEVGRKEHVPQIWSLPNGKAVEPAVDLTMMPGAGGVSGMGPAVSYNHSTFLGYNGLTSMPPLSFSPAAYGSGGTVPYMVDSRGAPVVPQVGGSSSNVLSSYAQPPYIMSMAGTQLGLNGVGPSRPNFDLNSGFIIDGGNRDALTARPFFFPGQNRAMEDRTLQQSSSSGVGGKRKEPDGSGWETYPFGYKHQQQPPWK*