Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148110 | sp|Q8L3W1|VRN1_ARATH | 29.231 | 325 | 139 | 7 | 3 | 240 | 21 | 341 | 7.58e-35 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148110 | A0A2K3PAY3 | 75.314 | 239 | 59 | 0 | 3 | 241 | 36 | 274 | 5.80e-128 | 372 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0148110 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148110 | MtrunA17_Chr5g0429931 | 71.784 | 241 | 68 | 0 | 1 | 241 | 8 | 248 | 5.50e-126 | 357 |
| Msa0148110 | MtrunA17_Chr3g0077451 | 67.083 | 240 | 68 | 2 | 3 | 241 | 11 | 240 | 1.13e-112 | 323 |
| Msa0148110 | MtrunA17_Chr3g0077411 | 63.968 | 247 | 81 | 2 | 3 | 241 | 277 | 523 | 4.73e-103 | 308 |
| Msa0148110 | MtrunA17_Chr3g0077411 | 51.101 | 227 | 88 | 2 | 3 | 229 | 40 | 243 | 2.87e-67 | 216 |
| Msa0148110 | MtrunA17_Chr3g0077421 | 67.619 | 210 | 56 | 2 | 32 | 239 | 1 | 200 | 4.06e-98 | 285 |
| Msa0148110 | MtrunA17_Chr3g0077441 | 67.619 | 210 | 56 | 2 | 32 | 239 | 1 | 200 | 4.06e-98 | 285 |
| Msa0148110 | MtrunA17_Chr3g0077431 | 64.455 | 211 | 64 | 2 | 32 | 241 | 1 | 201 | 1.26e-92 | 270 |
| Msa0148110 | MtrunA17_Chr4g0009491 | 66.321 | 193 | 65 | 0 | 3 | 195 | 240 | 432 | 9.43e-82 | 251 |
| Msa0148110 | MtrunA17_Chr4g0009491 | 52.336 | 214 | 80 | 1 | 1 | 214 | 10 | 201 | 2.59e-64 | 206 |
| Msa0148110 | MtrunA17_Chr3g0077361 | 54.393 | 239 | 74 | 1 | 3 | 241 | 304 | 507 | 3.81e-78 | 244 |
| Msa0148110 | MtrunA17_Chr3g0077361 | 55.603 | 232 | 79 | 3 | 3 | 232 | 55 | 264 | 1.79e-73 | 232 |
| Msa0148110 | MtrunA17_Chr3g0077381 | 62.176 | 193 | 66 | 1 | 3 | 195 | 262 | 447 | 1.46e-73 | 230 |
| Msa0148110 | MtrunA17_Chr3g0077381 | 49.145 | 234 | 73 | 3 | 1 | 232 | 33 | 222 | 1.06e-59 | 194 |
| Msa0148110 | MtrunA17_Chr3g0077461 | 51.046 | 239 | 86 | 3 | 1 | 238 | 20 | 228 | 2.48e-71 | 225 |
| Msa0148110 | MtrunA17_Chr3g0077461 | 50.215 | 233 | 97 | 5 | 3 | 233 | 252 | 467 | 3.30e-67 | 214 |
| Msa0148110 | MtrunA17_Chr3g0103171 | 27.376 | 263 | 160 | 4 | 2 | 234 | 4 | 265 | 3.32e-24 | 97.4 |
| Msa0148110 | MtrunA17_Chr1g0163071 | 28.231 | 294 | 143 | 9 | 4 | 236 | 2 | 288 | 3.41e-24 | 98.2 |
| Msa0148110 | MtrunA17_Chr1g0162441 | 45.238 | 84 | 46 | 0 | 3 | 86 | 22 | 105 | 1.02e-23 | 98.6 |
| Msa0148110 | MtrunA17_Chr1g0162441 | 33.333 | 129 | 77 | 3 | 114 | 236 | 268 | 393 | 3.87e-14 | 71.2 |
| Msa0148110 | MtrunA17_Chr5g0421921 | 42.857 | 112 | 63 | 1 | 128 | 239 | 2 | 112 | 1.43e-23 | 91.7 |
| Msa0148110 | MtrunA17_Chr5g0421731 | 42.857 | 112 | 63 | 1 | 128 | 239 | 2 | 112 | 1.43e-23 | 91.7 |
| Msa0148110 | MtrunA17_Chr3g0103181 | 28.897 | 263 | 148 | 7 | 3 | 234 | 25 | 279 | 3.02e-23 | 95.1 |
| Msa0148110 | MtrunA17_Chr5g0421851 | 42.105 | 114 | 65 | 1 | 126 | 239 | 75 | 187 | 4.06e-22 | 90.1 |
| Msa0148110 | MtrunA17_Chr1g0208771 | 26.190 | 294 | 147 | 8 | 1 | 236 | 10 | 291 | 4.58e-21 | 91.3 |
| Msa0148110 | MtrunA17_Chr3g0131891 | 25.275 | 273 | 165 | 6 | 4 | 238 | 35 | 306 | 6.30e-21 | 89.7 |
| Msa0148110 | MtrunA17_Chr8g0390841 | 25.784 | 287 | 152 | 8 | 3 | 236 | 54 | 332 | 1.18e-20 | 90.1 |
| Msa0148110 | MtrunA17_Chr7g0233561 | 25.965 | 285 | 160 | 7 | 3 | 238 | 33 | 315 | 4.04e-20 | 87.4 |
| Msa0148110 | MtrunA17_Chr7g0233521 | 25.275 | 273 | 158 | 6 | 4 | 238 | 2 | 266 | 5.61e-20 | 86.3 |
| Msa0148110 | MtrunA17_Chr1g0162411 | 45.946 | 74 | 40 | 0 | 3 | 76 | 22 | 95 | 3.65e-19 | 85.9 |
| Msa0148110 | MtrunA17_Chr4g0033961 | 40.476 | 84 | 50 | 0 | 3 | 86 | 21 | 104 | 7.69e-19 | 84.7 |
| Msa0148110 | MtrunA17_Chr4g0033961 | 35.115 | 131 | 76 | 3 | 114 | 238 | 264 | 391 | 1.52e-14 | 72.4 |
| Msa0148110 | MtrunA17_Chr1g0162421 | 45.614 | 57 | 31 | 0 | 3 | 59 | 8 | 64 | 7.75e-17 | 72.4 |
| Msa0148110 | MtrunA17_Chr1g0154131 | 26.296 | 270 | 156 | 6 | 4 | 231 | 198 | 466 | 1.00e-16 | 79.0 |
| Msa0148110 | MtrunA17_Chr5g0419201 | 33.333 | 117 | 71 | 2 | 4 | 120 | 32 | 141 | 1.06e-16 | 75.5 |
| Msa0148110 | MtrunA17_Chr1g0154161 | 26.515 | 264 | 158 | 8 | 4 | 234 | 46 | 306 | 4.70e-16 | 75.9 |
| Msa0148110 | MtrunA17_Chr3g0103191 | 28.421 | 190 | 110 | 3 | 3 | 167 | 25 | 213 | 7.26e-15 | 71.6 |
| Msa0148110 | MtrunA17_Chr3g0103151 | 39.286 | 84 | 51 | 0 | 3 | 86 | 25 | 108 | 1.20e-14 | 69.3 |
| Msa0148110 | MtrunA17_Chr7g0233531 | 24.627 | 268 | 166 | 6 | 4 | 238 | 2 | 266 | 2.22e-14 | 70.9 |
| Msa0148110 | MtrunA17_Chr7g0233571 | 35.714 | 84 | 54 | 0 | 4 | 87 | 26 | 109 | 2.36e-14 | 69.7 |
| Msa0148110 | MtrunA17_Chr1g0163221 | 23.810 | 273 | 161 | 8 | 4 | 236 | 27 | 292 | 1.19e-13 | 69.3 |
| Msa0148110 | MtrunA17_Chr7g0233541 | 32.558 | 86 | 58 | 0 | 4 | 89 | 2 | 87 | 1.67e-13 | 68.6 |
| Msa0148110 | MtrunA17_Chr3g0103201 | 26.389 | 216 | 131 | 5 | 47 | 234 | 5 | 220 | 2.05e-13 | 67.4 |
| Msa0148110 | MtrunA17_Chr4g0067431 | 24.055 | 291 | 157 | 9 | 3 | 236 | 30 | 313 | 1.98e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148110 | AT3G18990.2 | 29.448 | 326 | 139 | 7 | 3 | 241 | 21 | 342 | 6.31e-36 | 131 |
| Msa0148110 | AT3G18990.1 | 29.231 | 325 | 139 | 7 | 3 | 240 | 21 | 341 | 7.71e-36 | 130 |
| Msa0148110 | AT4G01580.1 | 38.636 | 88 | 54 | 0 | 1 | 88 | 43 | 130 | 2.24e-15 | 72.4 |
| Msa0148110 | AT1G49475.1 | 38.636 | 88 | 53 | 1 | 1 | 88 | 47 | 133 | 5.99e-15 | 71.2 |
| Msa0148110 | AT3G18960.2 | 36.364 | 88 | 56 | 0 | 1 | 88 | 43 | 130 | 4.41e-14 | 68.9 |
| Msa0148110 | AT3G18960.1 | 36.364 | 88 | 56 | 0 | 1 | 88 | 43 | 130 | 5.29e-14 | 68.9 |
| Msa0148110 | AT1G49480.3 | 33.083 | 133 | 79 | 4 | 114 | 240 | 98 | 226 | 7.97e-14 | 68.9 |
| Msa0148110 | AT1G49480.1 | 33.083 | 133 | 79 | 4 | 114 | 240 | 98 | 226 | 7.97e-14 | 68.9 |
| Msa0148110 | AT1G49480.2 | 33.083 | 133 | 79 | 4 | 114 | 240 | 98 | 226 | 7.97e-14 | 68.9 |
| Msa0148110 | AT3G18960.3 | 36.782 | 87 | 55 | 0 | 2 | 88 | 7 | 93 | 1.42e-13 | 67.0 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCCGGATGGTTGTATT+TGG | 0.168306 | 1_4:+8341155 | Msa0148110:CDS |
| TTGTTGGCCCTTTGAAATTT+AGG | 0.191348 | 1_4:-8341782 | None:intergenic |
| AATGAGTTTATCGCAAGATT+TGG | 0.267691 | 1_4:+8341103 | Msa0148110:CDS |
| ATTGCTGTCCATGAGAGTTT+TGG | 0.281327 | 1_4:-8341697 | None:intergenic |
| AAGTGAGAGCCGTGGGAAAA+AGG | 0.303768 | 1_4:+8341423 | Msa0148110:CDS |
| TGATAGGAACATTTGGCTTC+AGG | 0.319381 | 1_4:-8341670 | None:intergenic |
| TTCCTTCATAATTGAAAGAA+AGG | 0.357561 | 1_4:-8341270 | None:intergenic |
| AATCTTGCGATAAACTCATT+TGG | 0.373859 | 1_4:-8341100 | None:intergenic |
| GGATGGTTGTATTTGGGAAA+TGG | 0.374541 | 1_4:+8341162 | Msa0148110:CDS |
| TGTTGCTACAATTACTGTTC+CGG | 0.380706 | 1_4:+8341141 | Msa0148110:CDS |
| TTTGGTTCTCCACTAGTACT+TGG | 0.391271 | 1_4:-8341358 | None:intergenic |
| TGTTCCGGATGGTTGTATTT+GGG | 0.395192 | 1_4:+8341156 | Msa0148110:CDS |
| TGGAGTTTGATAGGAACATT+TGG | 0.401951 | 1_4:-8341677 | None:intergenic |
| TACCTTTCTTTCAATTATGA+AGG | 0.405245 | 1_4:+8341268 | Msa0148110:CDS |
| GAATACTACTCAATAGGATA+TGG | 0.407238 | 1_4:+8341241 | Msa0148110:CDS |
| GTTTATTGGGTTGAATTCAT+TGG | 0.425223 | 1_4:-8341491 | None:intergenic |
| ATCTCCACGCGACAGATTGT+TGG | 0.449174 | 1_4:-8341798 | None:intergenic |
| TTCATAGAATACTACTCAAT+AGG | 0.454470 | 1_4:+8341235 | Msa0148110:CDS |
| GCTCTCACTTGTTTCAACCT+TGG | 0.454890 | 1_4:-8341410 | None:intergenic |
| ATTGTGACCTTCAGCACAAT+CGG | 0.458261 | 1_4:-8341851 | None:intergenic |
| AAACTCTCATGGACAGCAAT+GGG | 0.473713 | 1_4:+8341700 | Msa0148110:CDS |
| AAACAAAGTATCCTAGTCCT+AGG | 0.485163 | 1_4:+8341380 | Msa0148110:CDS |
| TGAATCATTATCAATGCAAA+TGG | 0.486207 | 1_4:+8341748 | Msa0148110:CDS |
| AGGATTTCCTAAATTTCAAA+GGG | 0.499352 | 1_4:+8341775 | Msa0148110:CDS |
| AAAACTCTCATGGACAGCAA+TGG | 0.512370 | 1_4:+8341699 | Msa0148110:CDS |
| AGTATCCTAGTCCTAGGAAA+AGG | 0.513608 | 1_4:+8341386 | Msa0148110:CDS |
| ATCAAACTCCAAAACTCTCA+TGG | 0.513878 | 1_4:+8341689 | Msa0148110:CDS |
| AAAGAAGCCGATTGTGCTGA+AGG | 0.518923 | 1_4:+8341844 | Msa0148110:CDS |
| GAGGATTTCCTAAATTTCAA+AGG | 0.521737 | 1_4:+8341774 | Msa0148110:CDS |
| ATTTCCCAAATACAACCATC+CGG | 0.559087 | 1_4:-8341160 | None:intergenic |
| TTCAAAACTCCAAGTACTAG+TGG | 0.562446 | 1_4:+8341349 | Msa0148110:CDS |
| ACTACTCAATAGGATATGGT+TGG | 0.616901 | 1_4:+8341245 | Msa0148110:CDS |
| TTGAAACAAGTGAGAGCCGT+GGG | 0.617139 | 1_4:+8341416 | Msa0148110:CDS |
| GCTACAATTACTGTTCCGGA+TGG | 0.637015 | 1_4:+8341145 | Msa0148110:CDS |
| AGGGCCAACAATCTGTCGCG+TGG | 0.637859 | 1_4:+8341794 | Msa0148110:CDS |
| TAGTCCTAGGAAAAGGTCCA+AGG | 0.639086 | 1_4:+8341393 | Msa0148110:CDS |
| AATTGCTAAGGCAAATCGAA+CGG | 0.646365 | 1_4:+8341531 | Msa0148110:CDS |
| GTTGAAACAAGTGAGAGCCG+TGG | 0.675349 | 1_4:+8341415 | Msa0148110:CDS |
| GAAATGGAACTGAAGAAATG+CGG | 0.682734 | 1_4:+8341178 | Msa0148110:CDS |
| TTATCAATGCAAATGGCACG+AGG | 0.695216 | 1_4:+8341755 | Msa0148110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTTGAACGAAAAAAA+GGG | - | chr1_4:8341516-8341535 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTAAAGTAATGT+TGG | + | chr1_4:8341573-8341592 | Msa0148110:intron | 20.0% |
| !!! | CAATTTTTGAACGAAAAAAA+GGG | - | chr1_4:8341516-8341535 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTTAAAGTAATGT+TGG | + | chr1_4:8341573-8341592 | Msa0148110:intron | 20.0% |
| !! | ACGTTTTCTTTTGTAACAAA+TGG | + | chr1_4:8341206-8341225 | Msa0148110:CDS | 25.0% |
| ! | TTCATAGAATACTACTCAAT+AGG | + | chr1_4:8341235-8341254 | Msa0148110:CDS | 25.0% |
| ! | TACCTTTCTTTCAATTATGA+AGG | + | chr1_4:8341268-8341287 | Msa0148110:CDS | 25.0% |
| ! | TTCCTTCATAATTGAAAGAA+AGG | - | chr1_4:8341273-8341292 | None:intergenic | 25.0% |
| ! | AACGAAAAAAAGGGTTTATT+GGG | - | chr1_4:8341507-8341526 | None:intergenic | 25.0% |
| !! | GCAATTTTTGAACGAAAAAA+AGG | - | chr1_4:8341517-8341536 | None:intergenic | 25.0% |
| !! | TTTTCGTTCAAAAATTGCTA+AGG | + | chr1_4:8341519-8341538 | Msa0148110:CDS | 25.0% |
| ! | TGAATCATTATCAATGCAAA+TGG | + | chr1_4:8341748-8341767 | Msa0148110:CDS | 25.0% |
| ! | AGGATTTCCTAAATTTCAAA+GGG | + | chr1_4:8341775-8341794 | Msa0148110:CDS | 25.0% |
| !! | ACGTTTTCTTTTGTAACAAA+TGG | + | chr1_4:8341206-8341225 | Msa0148110:CDS | 25.0% |
| ! | TTCATAGAATACTACTCAAT+AGG | + | chr1_4:8341235-8341254 | Msa0148110:CDS | 25.0% |
| ! | TACCTTTCTTTCAATTATGA+AGG | + | chr1_4:8341268-8341287 | Msa0148110:CDS | 25.0% |
| ! | TTCCTTCATAATTGAAAGAA+AGG | - | chr1_4:8341273-8341292 | None:intergenic | 25.0% |
| ! | AACGAAAAAAAGGGTTTATT+GGG | - | chr1_4:8341507-8341526 | None:intergenic | 25.0% |
| !! | GCAATTTTTGAACGAAAAAA+AGG | - | chr1_4:8341517-8341536 | None:intergenic | 25.0% |
| !! | TTTTCGTTCAAAAATTGCTA+AGG | + | chr1_4:8341519-8341538 | Msa0148110:CDS | 25.0% |
| ! | TGAATCATTATCAATGCAAA+TGG | + | chr1_4:8341748-8341767 | Msa0148110:CDS | 25.0% |
| ! | AGGATTTCCTAAATTTCAAA+GGG | + | chr1_4:8341775-8341794 | Msa0148110:CDS | 25.0% |
| AATCTTGCGATAAACTCATT+TGG | - | chr1_4:8341103-8341122 | None:intergenic | 30.0% | |
| AATGAGTTTATCGCAAGATT+TGG | + | chr1_4:8341103-8341122 | Msa0148110:CDS | 30.0% | |
| GAATACTACTCAATAGGATA+TGG | + | chr1_4:8341241-8341260 | Msa0148110:CDS | 30.0% | |
| !! | GTTTATTGGGTTGAATTCAT+TGG | - | chr1_4:8341494-8341513 | None:intergenic | 30.0% |
| GAACGAAAAAAAGGGTTTAT+TGG | - | chr1_4:8341508-8341527 | None:intergenic | 30.0% | |
| !!! | GGATTATACTTTGGAGTTTT+TGG | + | chr1_4:8341557-8341576 | Msa0148110:intron | 30.0% |
| GAAAGAGAGATCAATTTAAG+TGG | - | chr1_4:8341612-8341631 | None:intergenic | 30.0% | |
| GAGGATTTCCTAAATTTCAA+AGG | + | chr1_4:8341774-8341793 | Msa0148110:CDS | 30.0% | |
| AATCTTGCGATAAACTCATT+TGG | - | chr1_4:8341103-8341122 | None:intergenic | 30.0% | |
| AATGAGTTTATCGCAAGATT+TGG | + | chr1_4:8341103-8341122 | Msa0148110:CDS | 30.0% | |
| GAATACTACTCAATAGGATA+TGG | + | chr1_4:8341241-8341260 | Msa0148110:CDS | 30.0% | |
| !! | GTTTATTGGGTTGAATTCAT+TGG | - | chr1_4:8341494-8341513 | None:intergenic | 30.0% |
| GAACGAAAAAAAGGGTTTAT+TGG | - | chr1_4:8341508-8341527 | None:intergenic | 30.0% | |
| !!! | GGATTATACTTTGGAGTTTT+TGG | + | chr1_4:8341557-8341576 | Msa0148110:intron | 30.0% |
| GAAAGAGAGATCAATTTAAG+TGG | - | chr1_4:8341612-8341631 | None:intergenic | 30.0% | |
| GAGGATTTCCTAAATTTCAA+AGG | + | chr1_4:8341774-8341793 | Msa0148110:CDS | 30.0% | |
| TGTTGCTACAATTACTGTTC+CGG | + | chr1_4:8341141-8341160 | Msa0148110:CDS | 35.0% | |
| ATTTCCCAAATACAACCATC+CGG | - | chr1_4:8341163-8341182 | None:intergenic | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | + | chr1_4:8341178-8341197 | Msa0148110:CDS | 35.0% | |
| ACTACTCAATAGGATATGGT+TGG | + | chr1_4:8341245-8341264 | Msa0148110:CDS | 35.0% | |
| !!! | CTAGTACTTGGAGTTTTGAA+CGG | - | chr1_4:8341349-8341368 | None:intergenic | 35.0% |
| TTCAAAACTCCAAGTACTAG+TGG | + | chr1_4:8341349-8341368 | Msa0148110:CDS | 35.0% | |
| !!! | GGACTAGGATACTTTGTTTT+TGG | - | chr1_4:8341379-8341398 | None:intergenic | 35.0% |
| ! | AAACAAAGTATCCTAGTCCT+AGG | + | chr1_4:8341380-8341399 | Msa0148110:CDS | 35.0% |
| !! | TGTTTTTGTCCTTTTTCCCA+CGG | - | chr1_4:8341435-8341454 | None:intergenic | 35.0% |
| ! | TGCTTCTAAAAAAGCAGAGA+AGG | + | chr1_4:8341465-8341484 | Msa0148110:CDS | 35.0% |
| AATTGCTAAGGCAAATCGAA+CGG | + | chr1_4:8341531-8341550 | Msa0148110:CDS | 35.0% | |
| TGGAGTTTGATAGGAACATT+TGG | - | chr1_4:8341680-8341699 | None:intergenic | 35.0% | |
| !!! | TGAGAGTTTTGGAGTTTGAT+AGG | - | chr1_4:8341689-8341708 | None:intergenic | 35.0% |
| ATCAAACTCCAAAACTCTCA+TGG | + | chr1_4:8341689-8341708 | Msa0148110:CDS | 35.0% | |
| !! | TTGTTGGCCCTTTGAAATTT+AGG | - | chr1_4:8341785-8341804 | None:intergenic | 35.0% |
| TGTTGCTACAATTACTGTTC+CGG | + | chr1_4:8341141-8341160 | Msa0148110:CDS | 35.0% | |
| ATTTCCCAAATACAACCATC+CGG | - | chr1_4:8341163-8341182 | None:intergenic | 35.0% | |
| GAAATGGAACTGAAGAAATG+CGG | + | chr1_4:8341178-8341197 | Msa0148110:CDS | 35.0% | |
| ACTACTCAATAGGATATGGT+TGG | + | chr1_4:8341245-8341264 | Msa0148110:CDS | 35.0% | |
| !!! | CTAGTACTTGGAGTTTTGAA+CGG | - | chr1_4:8341349-8341368 | None:intergenic | 35.0% |
| TTCAAAACTCCAAGTACTAG+TGG | + | chr1_4:8341349-8341368 | Msa0148110:CDS | 35.0% | |
| !!! | GGACTAGGATACTTTGTTTT+TGG | - | chr1_4:8341379-8341398 | None:intergenic | 35.0% |
| ! | AAACAAAGTATCCTAGTCCT+AGG | + | chr1_4:8341380-8341399 | Msa0148110:CDS | 35.0% |
| !! | TGTTTTTGTCCTTTTTCCCA+CGG | - | chr1_4:8341435-8341454 | None:intergenic | 35.0% |
| ! | TGCTTCTAAAAAAGCAGAGA+AGG | + | chr1_4:8341465-8341484 | Msa0148110:CDS | 35.0% |
| AATTGCTAAGGCAAATCGAA+CGG | + | chr1_4:8341531-8341550 | Msa0148110:CDS | 35.0% | |
| TGGAGTTTGATAGGAACATT+TGG | - | chr1_4:8341680-8341699 | None:intergenic | 35.0% | |
| !!! | TGAGAGTTTTGGAGTTTGAT+AGG | - | chr1_4:8341689-8341708 | None:intergenic | 35.0% |
| ATCAAACTCCAAAACTCTCA+TGG | + | chr1_4:8341689-8341708 | Msa0148110:CDS | 35.0% | |
| !! | TTGTTGGCCCTTTGAAATTT+AGG | - | chr1_4:8341785-8341804 | None:intergenic | 35.0% |
| TGTTCCGGATGGTTGTATTT+GGG | + | chr1_4:8341156-8341175 | Msa0148110:CDS | 40.0% | |
| GGATGGTTGTATTTGGGAAA+TGG | + | chr1_4:8341162-8341181 | Msa0148110:CDS | 40.0% | |
| !! | TTTGGTTCTCCACTAGTACT+TGG | - | chr1_4:8341361-8341380 | None:intergenic | 40.0% |
| AGTATCCTAGTCCTAGGAAA+AGG | + | chr1_4:8341386-8341405 | Msa0148110:CDS | 40.0% | |
| GAACGGTGAGGATTATACTT+TGG | + | chr1_4:8341548-8341567 | Msa0148110:intron | 40.0% | |
| ! | TGATAGGAACATTTGGCTTC+AGG | - | chr1_4:8341673-8341692 | None:intergenic | 40.0% |
| ! | ATTGCTGTCCATGAGAGTTT+TGG | - | chr1_4:8341700-8341719 | None:intergenic | 40.0% |
| AAAACTCTCATGGACAGCAA+TGG | + | chr1_4:8341699-8341718 | Msa0148110:CDS | 40.0% | |
| AAACTCTCATGGACAGCAAT+GGG | + | chr1_4:8341700-8341719 | Msa0148110:CDS | 40.0% | |
| TTATCAATGCAAATGGCACG+AGG | + | chr1_4:8341755-8341774 | Msa0148110:CDS | 40.0% | |
| ATTGTGACCTTCAGCACAAT+CGG | - | chr1_4:8341854-8341873 | None:intergenic | 40.0% | |
| TGTTCCGGATGGTTGTATTT+GGG | + | chr1_4:8341156-8341175 | Msa0148110:CDS | 40.0% | |
| GGATGGTTGTATTTGGGAAA+TGG | + | chr1_4:8341162-8341181 | Msa0148110:CDS | 40.0% | |
| !! | TTTGGTTCTCCACTAGTACT+TGG | - | chr1_4:8341361-8341380 | None:intergenic | 40.0% |
| AGTATCCTAGTCCTAGGAAA+AGG | + | chr1_4:8341386-8341405 | Msa0148110:CDS | 40.0% | |
| GAACGGTGAGGATTATACTT+TGG | + | chr1_4:8341548-8341567 | Msa0148110:intron | 40.0% | |
| ! | TGATAGGAACATTTGGCTTC+AGG | - | chr1_4:8341673-8341692 | None:intergenic | 40.0% |
| ! | ATTGCTGTCCATGAGAGTTT+TGG | - | chr1_4:8341700-8341719 | None:intergenic | 40.0% |
| AAAACTCTCATGGACAGCAA+TGG | + | chr1_4:8341699-8341718 | Msa0148110:CDS | 40.0% | |
| AAACTCTCATGGACAGCAAT+GGG | + | chr1_4:8341700-8341719 | Msa0148110:CDS | 40.0% | |
| TTATCAATGCAAATGGCACG+AGG | + | chr1_4:8341755-8341774 | Msa0148110:CDS | 40.0% | |
| ATTGTGACCTTCAGCACAAT+CGG | - | chr1_4:8341854-8341873 | None:intergenic | 40.0% | |
| GCTACAATTACTGTTCCGGA+TGG | + | chr1_4:8341145-8341164 | Msa0148110:CDS | 45.0% | |
| CTGTTCCGGATGGTTGTATT+TGG | + | chr1_4:8341155-8341174 | Msa0148110:CDS | 45.0% | |
| ! | TTGGACCTTTTCCTAGGACT+AGG | - | chr1_4:8341394-8341413 | None:intergenic | 45.0% |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr1_4:8341393-8341412 | Msa0148110:CDS | 45.0% | |
| ! | TCAACCTTGGACCTTTTCCT+AGG | - | chr1_4:8341400-8341419 | None:intergenic | 45.0% |
| GCTCTCACTTGTTTCAACCT+TGG | - | chr1_4:8341413-8341432 | None:intergenic | 45.0% | |
| TTGAAACAAGTGAGAGCCGT+GGG | + | chr1_4:8341416-8341435 | Msa0148110:CDS | 45.0% | |
| AAAGAAGCCGATTGTGCTGA+AGG | + | chr1_4:8341844-8341863 | Msa0148110:CDS | 45.0% | |
| GCTACAATTACTGTTCCGGA+TGG | + | chr1_4:8341145-8341164 | Msa0148110:CDS | 45.0% | |
| CTGTTCCGGATGGTTGTATT+TGG | + | chr1_4:8341155-8341174 | Msa0148110:CDS | 45.0% | |
| ! | TTGGACCTTTTCCTAGGACT+AGG | - | chr1_4:8341394-8341413 | None:intergenic | 45.0% |
| TAGTCCTAGGAAAAGGTCCA+AGG | + | chr1_4:8341393-8341412 | Msa0148110:CDS | 45.0% | |
| ! | TCAACCTTGGACCTTTTCCT+AGG | - | chr1_4:8341400-8341419 | None:intergenic | 45.0% |
| GCTCTCACTTGTTTCAACCT+TGG | - | chr1_4:8341413-8341432 | None:intergenic | 45.0% | |
| TTGAAACAAGTGAGAGCCGT+GGG | + | chr1_4:8341416-8341435 | Msa0148110:CDS | 45.0% | |
| AAAGAAGCCGATTGTGCTGA+AGG | + | chr1_4:8341844-8341863 | Msa0148110:CDS | 45.0% | |
| GTTGAAACAAGTGAGAGCCG+TGG | + | chr1_4:8341415-8341434 | Msa0148110:CDS | 50.0% | |
| AAGTGAGAGCCGTGGGAAAA+AGG | + | chr1_4:8341423-8341442 | Msa0148110:CDS | 50.0% | |
| CTAAGGCAAATCGAACGGTG+AGG | + | chr1_4:8341536-8341555 | Msa0148110:intron | 50.0% | |
| ATCTCCACGCGACAGATTGT+TGG | - | chr1_4:8341801-8341820 | None:intergenic | 50.0% | |
| GTTGAAACAAGTGAGAGCCG+TGG | + | chr1_4:8341415-8341434 | Msa0148110:CDS | 50.0% | |
| AAGTGAGAGCCGTGGGAAAA+AGG | + | chr1_4:8341423-8341442 | Msa0148110:CDS | 50.0% | |
| CTAAGGCAAATCGAACGGTG+AGG | + | chr1_4:8341536-8341555 | Msa0148110:intron | 50.0% | |
| ATCTCCACGCGACAGATTGT+TGG | - | chr1_4:8341801-8341820 | None:intergenic | 50.0% | |
| AGGGCCAACAATCTGTCGCG+TGG | + | chr1_4:8341794-8341813 | Msa0148110:CDS | 60.0% | |
| AGGGCCAACAATCTGTCGCG+TGG | + | chr1_4:8341794-8341813 | Msa0148110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8341088 | 8341901 | 8341088 | ID=Msa0148110;Name=Msa0148110 |
| chr1_4 | mRNA | 8341088 | 8341901 | 8341088 | ID=Msa0148110-mRNA-1;Parent=Msa0148110;Name=Msa0148110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|241 |
| chr1_4 | exon | 8341088 | 8341552 | 8341088 | ID=Msa0148110-mRNA-1:exon:3589;Parent=Msa0148110-mRNA-1 |
| chr1_4 | exon | 8341641 | 8341901 | 8341641 | ID=Msa0148110-mRNA-1:exon:3590;Parent=Msa0148110-mRNA-1 |
| chr1_4 | CDS | 8341088 | 8341552 | 8341088 | ID=Msa0148110-mRNA-1:cds;Parent=Msa0148110-mRNA-1 |
| chr1_4 | CDS | 8341641 | 8341901 | 8341641 | ID=Msa0148110-mRNA-1:cds;Parent=Msa0148110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
