AlfalfaGEDB | Msa0148710

M. sativa cultivar zhongmu-4 / Msa0148710

KEGG: K04424
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF14381.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0148710	KAG4379333.1	44.215	242	99	7	43	251	122	360	3.09e-36	156
Msa0148710	KAG4379333.1	61.303	261	94	4	258	513	658	916	4.65e-94	318

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0148710	sp\|Q9FPR3\|EDR1_ARATH	53.462	260	109	5	258	507	661	918	3.55e-75	259
Msa0148710	sp\|Q9FPR3\|EDR1_ARATH	35.468	203	98	8	46	220	133	330	5.04e-21	100

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0148710	G7IB74	48.163	245	85	8	43	251	131	369	2.18e-43	176
Msa0148710	G7IB74	60.075	268	95	5	258	515	655	920	5.21e-93	314

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0148710	MtrunA17_Chr1g0151541	60.075	268	95	5	258	515	655	920	1.00e-96	314
Msa0148710	MtrunA17_Chr1g0151541	48.163	245	85	8	43	251	131	369	4.20e-47	176
Msa0148710	MtrunA17_Chr1g0191171	51.504	266	117	5	258	513	681	944	2.36e-77	263
Msa0148710	MtrunA17_Chr1g0191171	37.624	202	95	6	46	220	145	342	2.24e-28	120
Msa0148710	MtrunA17_Chr8g0392871	50.376	266	120	5	258	513	731	994	1.20e-76	261
Msa0148710	MtrunA17_Chr8g0392871	39.306	173	84	6	67	221	182	351	3.67e-23	104
Msa0148710	MtrunA17_Chr2g0294351	46.667	270	132	5	258	517	458	725	1.09e-70	241
Msa0148710	MtrunA17_Chr6g0482711	45.896	268	133	5	256	513	650	915	7.48e-70	241
Msa0148710	MtrunA17_Chr6g0482711	40.351	171	85	5	67	221	181	350	6.29e-25	109
Msa0148710	MtrunA17_Chr5g0397931	46.360	261	128	6	260	510	417	675	2.69e-67	230

Showing 1 to 10 of 477 entries

Previous1 2 3 4 5…48Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0148710	AT5G11850.1	54.887	266	108	5	258	513	601	864	2.03e-84	281
Msa0148710	AT5G11850.1	39.614	207	94	6	46	222	144	349	6.15e-30	125
Msa0148710	AT1G08720.1	53.462	260	109	5	258	507	661	918	3.61e-76	259
Msa0148710	AT1G08720.1	35.468	203	98	8	46	220	133	330	5.13e-22	100
Msa0148710	AT1G18160.1	49.110	281	131	5	258	528	707	985	7.22e-75	256
Msa0148710	AT1G18160.1	38.636	176	80	6	67	220	193	362	3.26e-20	95.5
Msa0148710	AT1G73660.1	50.758	264	118	5	260	513	742	1003	1.64e-72	250
Msa0148710	AT1G73660.1	40.341	176	77	6	67	220	217	386	9.71e-23	103
Msa0148710	AT1G08720.2	53.629	248	103	5	258	495	661	906	3.70e-71	245
Msa0148710	AT1G08720.2	35.468	203	98	8	46	220	133	330	4.98e-22	101

Showing 1 to 10 of 512 entries

Previous1 2 3 4 5…52Next

Find 124 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCAAATAGGAAGGAC+GGG	0.543239	1_4:+9105149	None:intergenic
AAATCTTGATGGACAATGGG+AGG	0.564821	1_4:+9103313	None:intergenic
AAATTATTATAATTGGGAGG+TGG	0.577839	1_4:-9105749	Msa0148710:CDS
AACTCAGGAAAAGGTGGGCT+AGG	0.503433	1_4:-9105205	Msa0148710:CDS
AATGAGAGCAAAACAAATGT+TGG	0.532993	1_4:+9101459	None:intergenic
AATTTGATTACAGCTAGTGA+TGG	0.581348	1_4:-9104942	Msa0148710:CDS
ACAGATCTAGCACAACATCT+TGG	0.437497	1_4:+9104224	None:intergenic
ACCACACCATGGGATTTGCA+AGG	0.638059	1_4:+9102020	None:intergenic
ACCAGAATGGGAAGTTCGAT+GGG	0.564530	1_4:-9104754	Msa0148710:CDS
ACCCAAATCTTGTGCTGGTA+AGG	0.479815	1_4:-9102364	Msa0148710:intron

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GGATTCAATCGCTTAATTAT+TGG	-	chr1_4:9101540-9101559	Msa0148710:intron	30.0%
GAACAAAAATACAAATACGG+TGG	-	chr1_4:9101751-9101770	Msa0148710:intron	30.0%
AGTTCACCAAAATTAACAAC+CGG	+	chr1_4:9102000-9102019	None:intergenic	30.0%
TGTTAGGACCTTAAAAAGTA+GGG	+	chr1_4:9102124-9102143	None:intergenic	30.0%
ATGTTAGGACCTTAAAAAGT+AGG	+	chr1_4:9102125-9102144	None:intergenic	30.0%
AGCATGTTTGAAAGAATGTT+AGG	+	chr1_4:9102140-9102159	None:intergenic	30.0%
AATTTGATTACAGCTAGTGA+TGG	-	chr1_4:9102279-9102298	Msa0148710:intron	30.0%
TCGGATAAAATTACCAGAAT+GGG	-	chr1_4:9102455-9102474	Msa0148710:intron	30.0%
CTAACAAAAACCAATACGAT+CGG	+	chr1_4:9102508-9102527	None:intergenic	30.0%
TTGGATTCGATTTAAACTGT+AGG	-	chr1_4:9102561-9102580	Msa0148710:intron	30.0%

Showing 1 to 10 of 295 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	9101413	9105830	9101413	ID=Msa0148710;Name=Msa0148710
chr1_4	mRNA	9101413	9105830	9101413	ID=Msa0148710-mRNA-1;Parent=Msa0148710;Name=Msa0148710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.64\|0.46\|0.86\|0.78\|0.66\|15\|0\|552
chr1_4	exon	9101413	9101514	9101413	ID=Msa0148710-mRNA-1:exon:3885;Parent=Msa0148710-mRNA-1
chr1_4	exon	9101566	9101635	9101566	ID=Msa0148710-mRNA-1:exon:3884;Parent=Msa0148710-mRNA-1
chr1_4	exon	9101910	9102071	9101910	ID=Msa0148710-mRNA-1:exon:3883;Parent=Msa0148710-mRNA-1
chr1_4	exon	9102176	9102225	9102176	ID=Msa0148710-mRNA-1:exon:3882;Parent=Msa0148710-mRNA-1
chr1_4	exon	9102365	9102433	9102365	ID=Msa0148710-mRNA-1:exon:3881;Parent=Msa0148710-mRNA-1
chr1_4	exon	9103270	9103368	9103270	ID=Msa0148710-mRNA-1:exon:3880;Parent=Msa0148710-mRNA-1
chr1_4	exon	9103688	9103766	9103688	ID=Msa0148710-mRNA-1:exon:3879;Parent=Msa0148710-mRNA-1
chr1_4	exon	9104013	9104116	9104013	ID=Msa0148710-mRNA-1:exon:3878;Parent=Msa0148710-mRNA-1
chr1_4	exon	9104213	9104272	9104213	ID=Msa0148710-mRNA-1:exon:3877;Parent=Msa0148710-mRNA-1
chr1_4	exon	9104565	9104608	9104565	ID=Msa0148710-mRNA-1:exon:3876;Parent=Msa0148710-mRNA-1
chr1_4	exon	9104727	9105024	9104727	ID=Msa0148710-mRNA-1:exon:3875;Parent=Msa0148710-mRNA-1
chr1_4	exon	9105109	9105348	9105109	ID=Msa0148710-mRNA-1:exon:3874;Parent=Msa0148710-mRNA-1
chr1_4	exon	9105385	9105506	9105385	ID=Msa0148710-mRNA-1:exon:3873;Parent=Msa0148710-mRNA-1
chr1_4	exon	9105564	9105570	9105564	ID=Msa0148710-mRNA-1:exon:3872;Parent=Msa0148710-mRNA-1
chr1_4	exon	9105681	9105830	9105681	ID=Msa0148710-mRNA-1:exon:3871;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9105681	9105830	9105681	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9105564	9105570	9105564	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9105385	9105506	9105385	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9105109	9105348	9105109	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9104727	9105024	9104727	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9104565	9104608	9104565	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9104213	9104272	9104213	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9104013	9104116	9104013	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9103688	9103766	9103688	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9103270	9103368	9103270	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9102365	9102433	9102365	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9102176	9102225	9102176	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9101910	9102071	9101910	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9101566	9101635	9101566	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1
chr1_4	CDS	9101413	9101514	9101413	ID=Msa0148710-mRNA-1:cds;Parent=Msa0148710-mRNA-1

Gene Sequence

>Msa0148710

ATGGCCGATCTGCATCTGCAGCATGAAACGGGTGGTGGCGCTGCTGTTACTACAACAAAAAATTATTATAATTGGGAGGTGGCCGATATGAACCAAGTTTACGAGGCTGTTGATATTGAATGTGGTCGGATTCAATCGCTTAATTATTGGAAATACGGTATTCATCGAAGAGAACAAAAATACAAATACGGTGGAAACTTTCCATCGTTGGTGGATCTGAAAAAAAAAACTGTGCCAGATGTTAATTATGAAGTAATCTTGGTGGACCGTGTAGTTGATGAAAAGTCGTCTAATTCACATTTAATTCGAGCGCGATCAACACGAAATTTTGATGAATTAATCCTGAAACTTGCTGATTTTGTTGTTAAAAGACTGGGTGGACCGGTTGTTAATTTTGGTGAACTCAGGAAAAGGTGGGCTAGGAGGAGGAGTCAATTGCAAGTTGGTTTAAAAACTCCCGTCCTTCCTATTTGCTCTTTAGATGTTGGACTTTCGCGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGCATTCATATTCCCTCCACGCTTGTCAGACTGGATGATGAGGCTGTCAATTTGATTACAGCTAGTGATGGACGCGAATACATTGTTAATATGATGATGGGTGCTTGTTGTACTCTTATTCCTGCTGAGGGCCCCATTAGGATCCAAAACTATCGTTTTGCTGTTAGGGATTTCGCAAAGATTGCACAACAACCATACAACTTACATCCAATGCCTGCTGATCGTCGGATAAAATTACCAGAATGGGAAGTTCGATGGGAGGATCTTTGTATTGCCGATCGTATTGGTTCTCACTCCGAAGTTTACCTTGCTGTTGATTGCGTTGGCAATGATGTTGCTGTATGGAAGTTGCAACCCCAAGATGTTGTGCTAGATCTGTTCGAATCGGAAATTGAGATTATGCGAAAGCTGCAGCATCCTAATGTTGTGCGCTTCGTAGGAGCAATCACTTCTCTTGCTCGACATTTCTCTATCTTGACAGAGTTTCTTCCTAGAGGCAGTTTATTTAAGCTGTTGCATTGTTCCGATCTGGTACTCGATAAGGAGAGACGGTTGCGTATGGCTCTTGCTGCGGCTGAGGGAATGGATTACTTGCACACCCGCAATCCTCCCATTGTCCATCAAGATTTAAATACTACAAACCTTCTTGTTGACAGGCATTGGGATGTAAAGGTCTGTTATTTTGGTGTGTCATGCATGAAGTACCATGCATGTGTGTCACCCAAATCTTGTGCTGGTAAGCCCGAGTGGATGGCGCCAGAAGTATTTTCGAACACTCGTCCCATTGAAAATTTTGGTGTGATCTTGTGGGAGTTAATGACCTTGCAAATCCCATGGTGTGGTATGGACCATGAGCAGGTTAGACAGGCTGTTGGATTAAAAAATATGCGTCTTGAAATTCCAAAAGATGTGGATACAGAAGTAGCTAGAGTAATACAGGATTGCTGGCATACAAAGCCAGACATGCGCCCATCCTTCAAAGATCTGATTCTTCGTCTTAGCAATTTGTGCCAACAATATCAGAAAGTGGAGATCCTATCTCATGAGACATTGTTGCCAACATTTGTTTTGCTCTCATTGTCTCCTCTATATATTACAAGGGATCAAGAAAACAATAATAAGAAA

Protein sequence

>Msa0148710

MADLHLQHETGGGAAVTTTKNYYNWEVADMNQVYEAVDIECGRIQSLNYWKYGIHRREQKYKYGGNFPSLVDLKKKTVPDVNYEVILVDRVVDEKSSNSHLIRARSTRNFDELILKLADFVVKRLGGPVVNFGELRKRWARRRSQLQVGLKTPVLPICSLDVGLSRHRALLFKVLADSIHIPSTLVRLDDEAVNLITASDGREYIVNMMMGACCTLIPAEGPIRIQNYRFAVRDFAKIAQQPYNLHPMPADRRIKLPEWEVRWEDLCIADRIGSHSEVYLAVDCVGNDVAVWKLQPQDVVLDLFESEIEIMRKLQHPNVVRFVGAITSLARHFSILTEFLPRGSLFKLLHCSDLVLDKERRLRMALAAAEGMDYLHTRNPPIVHQDLNTTNLLVDRHWDVKVCYFGVSCMKYHACVSPKSCAGKPEWMAPEVFSNTRPIENFGVILWELMTLQIPWCGMDHEQVRQAVGLKNMRLEIPKDVDTEVARVIQDCWHTKPDMRPSFKDLILRLSNLCQQYQKVEILSHETLLPTFVLLSLSPLYITRDQENNNKK