Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149960 | XP_003588383.1 | 95.058 | 344 | 13 | 2 | 1 | 340 | 1 | 344 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149960 | sp|P69781|GAT12_ARATH | 56.981 | 265 | 97 | 7 | 93 | 340 | 67 | 331 | 6.48e-91 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149960 | G7IB47 | 95.058 | 344 | 13 | 2 | 1 | 340 | 1 | 344 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0149960 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149960 | MtrunA17_Chr1g0146231 | 95.058 | 344 | 13 | 2 | 1 | 340 | 1 | 344 | 0.0 | 650 |
| Msa0149960 | MtrunA17_Chr3g0140331 | 55.152 | 330 | 107 | 8 | 19 | 340 | 68 | 364 | 1.59e-103 | 308 |
| Msa0149960 | MtrunA17_Chr8g0340401 | 46.884 | 337 | 131 | 12 | 23 | 340 | 35 | 342 | 5.06e-78 | 242 |
| Msa0149960 | MtrunA17_Chr8g0372291 | 47.317 | 205 | 90 | 5 | 96 | 300 | 102 | 288 | 1.48e-46 | 159 |
| Msa0149960 | MtrunA17_Chr4g0035891 | 34.936 | 312 | 140 | 10 | 5 | 299 | 15 | 280 | 7.33e-44 | 152 |
| Msa0149960 | MtrunA17_Chr6g0461591 | 39.732 | 224 | 101 | 6 | 107 | 296 | 35 | 258 | 1.02e-40 | 143 |
| Msa0149960 | MtrunA17_Chr5g0404981 | 44.156 | 231 | 95 | 7 | 94 | 300 | 150 | 370 | 1.30e-39 | 144 |
| Msa0149960 | MtrunA17_Chr1g0199671 | 35.463 | 313 | 142 | 11 | 27 | 294 | 9 | 306 | 1.36e-37 | 137 |
| Msa0149960 | MtrunA17_Chr3g0145121 | 37.674 | 215 | 116 | 3 | 87 | 300 | 88 | 285 | 1.80e-37 | 136 |
| Msa0149960 | MtrunA17_Chr7g0253101 | 39.526 | 253 | 111 | 10 | 73 | 294 | 11 | 252 | 5.21e-35 | 128 |
| Msa0149960 | MtrunA17_Chr1g0169431 | 78.873 | 71 | 15 | 0 | 229 | 299 | 171 | 241 | 7.85e-35 | 127 |
| Msa0149960 | MtrunA17_Chr5g0395391 | 74.648 | 71 | 18 | 0 | 229 | 299 | 269 | 339 | 5.58e-33 | 125 |
| Msa0149960 | MtrunA17_Chr5g0395391 | 39.234 | 209 | 94 | 4 | 101 | 300 | 54 | 238 | 9.44e-29 | 113 |
| Msa0149960 | MtrunA17_Chr1g0213161 | 55.963 | 109 | 43 | 2 | 209 | 316 | 130 | 234 | 3.73e-32 | 120 |
| Msa0149960 | MtrunA17_Chr2g0326771 | 76.923 | 65 | 15 | 0 | 230 | 294 | 216 | 280 | 1.37e-31 | 120 |
| Msa0149960 | MtrunA17_Chr4g0028961 | 73.134 | 67 | 18 | 0 | 230 | 296 | 232 | 298 | 6.51e-31 | 119 |
| Msa0149960 | MtrunA17_Chr7g0232671 | 62.903 | 62 | 23 | 0 | 230 | 291 | 187 | 248 | 2.73e-21 | 91.3 |
| Msa0149960 | MtrunA17_Chr7g0232701 | 58.065 | 62 | 26 | 0 | 230 | 291 | 73 | 134 | 2.73e-19 | 82.8 |
| Msa0149960 | MtrunA17_Chr7g0232681 | 33.495 | 206 | 105 | 8 | 88 | 291 | 18 | 193 | 3.85e-19 | 84.3 |
| Msa0149960 | MtrunA17_Chr7g0271861 | 70.588 | 34 | 10 | 0 | 232 | 265 | 24 | 57 | 2.10e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149960 | AT5G25830.1 | 56.981 | 265 | 97 | 7 | 93 | 340 | 67 | 331 | 6.59e-92 | 278 |
| Msa0149960 | AT4G32890.1 | 43.881 | 335 | 131 | 9 | 21 | 340 | 16 | 308 | 4.66e-80 | 246 |
| Msa0149960 | AT3G60530.1 | 48.309 | 207 | 63 | 6 | 93 | 298 | 63 | 226 | 3.36e-49 | 165 |
| Msa0149960 | AT2G45050.1 | 45.175 | 228 | 89 | 7 | 89 | 310 | 60 | 257 | 5.02e-49 | 165 |
| Msa0149960 | AT4G36240.1 | 37.544 | 285 | 106 | 9 | 22 | 297 | 10 | 231 | 1.26e-39 | 140 |
| Msa0149960 | AT5G66320.2 | 38.519 | 270 | 116 | 8 | 69 | 312 | 86 | 331 | 3.48e-39 | 142 |
| Msa0149960 | AT5G66320.1 | 38.519 | 270 | 116 | 8 | 69 | 312 | 86 | 331 | 3.48e-39 | 142 |
| Msa0149960 | AT4G34680.1 | 39.171 | 217 | 81 | 5 | 90 | 299 | 77 | 249 | 3.57e-37 | 134 |
| Msa0149960 | AT4G34680.2 | 39.171 | 217 | 81 | 5 | 90 | 299 | 77 | 249 | 3.57e-37 | 134 |
| Msa0149960 | AT3G24050.1 | 74.286 | 70 | 18 | 0 | 229 | 298 | 193 | 262 | 2.78e-33 | 124 |
| Msa0149960 | AT1G08010.2 | 65.476 | 84 | 23 | 1 | 225 | 302 | 215 | 298 | 3.98e-33 | 125 |
| Msa0149960 | AT1G08010.1 | 65.476 | 84 | 23 | 1 | 225 | 302 | 215 | 298 | 3.98e-33 | 125 |
| Msa0149960 | AT1G08010.3 | 65.476 | 84 | 23 | 1 | 225 | 302 | 215 | 298 | 3.98e-33 | 125 |
| Msa0149960 | AT1G08000.2 | 70.833 | 72 | 21 | 0 | 225 | 296 | 213 | 284 | 3.78e-31 | 119 |
| Msa0149960 | AT1G08000.1 | 70.833 | 72 | 21 | 0 | 225 | 296 | 213 | 284 | 3.78e-31 | 119 |
| Msa0149960 | AT3G54810.1 | 62.963 | 81 | 30 | 0 | 230 | 310 | 229 | 309 | 6.51e-31 | 119 |
| Msa0149960 | AT3G54810.2 | 62.963 | 81 | 30 | 0 | 230 | 310 | 229 | 309 | 6.51e-31 | 119 |
| Msa0149960 | AT3G51080.1 | 72.464 | 69 | 19 | 0 | 230 | 298 | 221 | 289 | 1.42e-29 | 115 |
| Msa0149960 | AT2G28340.1 | 69.841 | 63 | 19 | 0 | 232 | 294 | 193 | 255 | 1.38e-26 | 107 |
| Msa0149960 | AT3G45170.1 | 64.179 | 67 | 24 | 0 | 232 | 298 | 117 | 183 | 2.60e-26 | 104 |
Find 117 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTCACTGTCCTTTCTTCT+TGG | 0.090798 | 1_4:+11058582 | None:intergenic |
| CCAATATCAGGAACGACATT+AGG | 0.287162 | 1_4:+11059449 | None:intergenic |
| GCAGTCTTTGCCTGCTTCCT+TGG | 0.291400 | 1_4:+11058606 | None:intergenic |
| TACTCTGATGTTGTAAAATC+TGG | 0.292416 | 1_4:+11058304 | None:intergenic |
| TATATTCAACAAGGAAGTTT+TGG | 0.298704 | 1_4:-11058772 | Msa0149960:CDS |
| CTAGCTGCAGGCCTGTATTC+AGG | 0.333508 | 1_4:+11058426 | None:intergenic |
| CTCCGGAGACCTGTGTGTTC+CGG | 0.345236 | 1_4:-11059399 | Msa0149960:intron |
| CAAAAGATGCAACTGATATC+AGG | 0.358334 | 1_4:-11058858 | Msa0149960:CDS |
| CCTAATGTCGTTCCTGATAT+TGG | 0.361673 | 1_4:-11059449 | Msa0149960:CDS |
| AAAACTTCCTTGTTGAATAT+AGG | 0.362486 | 1_4:+11058774 | None:intergenic |
| GAAATAGGAGGATGCTTTAC+GGG | 0.365602 | 1_4:-11058934 | Msa0149960:intron |
| CGACGTCATTGTTGAGGTTA+AGG | 0.370723 | 1_4:+11059594 | None:intergenic |
| TGTTGAATATAGGACTGTTT+CGG | 0.382615 | 1_4:+11058784 | None:intergenic |
| AAGACACCACAATGGCGAAC+CGG | 0.386976 | 1_4:-11058513 | Msa0149960:CDS |
| ACGATGCGAGTTGGAGTGTT+TGG | 0.387998 | 1_4:+11058386 | None:intergenic |
| AAATTCTGACAGCCAATATC+AGG | 0.389939 | 1_4:+11059437 | None:intergenic |
| TGAAATAGGAGGATGCTTTA+CGG | 0.392306 | 1_4:-11058935 | Msa0149960:intron |
| TTACTTGATTCACCAACATA+TGG | 0.405233 | 1_4:-11058253 | Msa0149960:CDS |
| AGGACTGTTTCGGTTGGGTT+GGG | 0.406165 | 1_4:+11058794 | None:intergenic |
| GTTGGGTTGGGAAAGCTCAC+GGG | 0.412320 | 1_4:+11058806 | None:intergenic |
| CAATGGCGAACCGGGCCTAA+TGG | 0.414512 | 1_4:-11058504 | Msa0149960:CDS |
| CACACAGGTCTCCGGAGAAA+TGG | 0.416213 | 1_4:+11059405 | None:intergenic |
| CACGGTAACGGTGGAGGAAG+AGG | 0.434827 | 1_4:+11059511 | None:intergenic |
| GAGGCAGAAGGAAATGTTGC+GGG | 0.440244 | 1_4:-11058346 | Msa0149960:CDS |
| CAATATCAGGAACGACATTA+GGG | 0.440367 | 1_4:+11059450 | None:intergenic |
| CTCTTGCTACGGGCCTTAGC+TGG | 0.442400 | 1_4:+11058747 | None:intergenic |
| TGTCGGAGGAAAAGGTGGTT+TGG | 0.443866 | 1_4:+11059651 | None:intergenic |
| GGTTGGGTTGGGAAAGCTCA+CGG | 0.448750 | 1_4:+11058805 | None:intergenic |
| TACATCATCTGCCTAAAATC+AGG | 0.450652 | 1_4:+11058228 | None:intergenic |
| GCTCACGGGGTTCTTCGTCC+TGG | 0.451765 | 1_4:+11058820 | None:intergenic |
| AACAGTGACGGTAGGTAAGA+TGG | 0.455172 | 1_4:+11058629 | None:intergenic |
| AATATAGGACTGTTTCGGTT+GGG | 0.459476 | 1_4:+11058789 | None:intergenic |
| TAGGACTGTTTCGGTTGGGT+TGG | 0.462649 | 1_4:+11058793 | None:intergenic |
| AGTGTTGTTGTCGGAGGAAA+AGG | 0.462952 | 1_4:+11059643 | None:intergenic |
| AAGGACAGTGACGGAGGGTC+AGG | 0.466229 | 1_4:-11058573 | Msa0149960:CDS |
| TACTTGATTCACCAACATAT+GGG | 0.466490 | 1_4:-11058252 | Msa0149960:CDS |
| CAACATTGGAAAGCCATTCC+AGG | 0.469957 | 1_4:+11058910 | None:intergenic |
| GTCGATTGGTGCCTGAATAC+AGG | 0.470023 | 1_4:-11058437 | Msa0149960:CDS |
| AGACACCACAATGGCGAACC+GGG | 0.471491 | 1_4:-11058512 | Msa0149960:CDS |
| GCCCACGAGTCCTCTTGCTA+CGG | 0.473059 | 1_4:+11058736 | None:intergenic |
| GGAGGATGCTTTACGGGACC+TGG | 0.481852 | 1_4:-11058928 | Msa0149960:CDS |
| GAATATAGGACTGTTTCGGT+TGG | 0.481982 | 1_4:+11058788 | None:intergenic |
| GTTAGCTCGTCATCATTGTC+CGG | 0.486841 | 1_4:-11059479 | Msa0149960:CDS |
| ATGCTTTACGGGACCTGGAA+TGG | 0.494601 | 1_4:-11058923 | Msa0149960:CDS |
| GACGTGAGCTCCAGTCGCAA+GGG | 0.498267 | 1_4:+11058712 | None:intergenic |
| AATCAAGTAATCATCATTGT+TGG | 0.499207 | 1_4:+11058266 | None:intergenic |
| TGTTTGGTCAGCACAAATGT+AGG | 0.504596 | 1_4:+11058402 | None:intergenic |
| AAGGTTGGTGTCGGAAATGA+TGG | 0.507635 | 1_4:+11059559 | None:intergenic |
| GGTGGTTTGGAAAATGTTGT+TGG | 0.508256 | 1_4:+11059664 | None:intergenic |
| TACCGACAATTTCATTGTTG+AGG | 0.524862 | 1_4:-11059621 | Msa0149960:CDS |
| AAACGATTCCTCAACAACAT+TGG | 0.525151 | 1_4:+11058896 | None:intergenic |
| TACCGGAACACACAGGTCTC+CGG | 0.525459 | 1_4:+11059397 | None:intergenic |
| ATTGACCACGGTAACGGTGG+AGG | 0.527850 | 1_4:+11059505 | None:intergenic |
| GCCCGTAGCAAGAGGACTCG+TGG | 0.533598 | 1_4:-11058738 | Msa0149960:CDS |
| ACAGTGACGGTAGGTAAGAT+GGG | 0.534314 | 1_4:+11058630 | None:intergenic |
| AAGATACAAGTCGGGTCGAT+TGG | 0.534399 | 1_4:-11058451 | Msa0149960:CDS |
| TTCCGACACCAACCTTGACT+CGG | 0.534554 | 1_4:-11059552 | Msa0149960:CDS |
| AGGCATGAAGGTGCGAAACC+AGG | 0.535516 | 1_4:-11058838 | Msa0149960:CDS |
| CCCACGAGTCCTCTTGCTAC+GGG | 0.537511 | 1_4:+11058737 | None:intergenic |
| GACGGAGGGTCAGGTGGAGA+TGG | 0.539597 | 1_4:-11058564 | Msa0149960:CDS |
| GTTGTTGTCGGAGGAAAAGG+TGG | 0.541025 | 1_4:+11059646 | None:intergenic |
| GAGGGTCAGGTGGAGATGGT+CGG | 0.544742 | 1_4:-11058560 | Msa0149960:CDS |
| CGTCACTGTTCCAAGGAAGC+AGG | 0.545318 | 1_4:-11058616 | Msa0149960:CDS |
| CAACACTTTACGATGCGAGT+TGG | 0.550252 | 1_4:+11058377 | None:intergenic |
| GTTGGAGCTGCGGAGGCAGA+AGG | 0.550943 | 1_4:-11058358 | Msa0149960:CDS |
| AAAGACTGCTCCAAGAAGAA+AGG | 0.555772 | 1_4:-11058592 | Msa0149960:CDS |
| AACGCTATTGACCACGGTAA+CGG | 0.557909 | 1_4:+11059499 | None:intergenic |
| GACAGTGACGGAGGGTCAGG+TGG | 0.558691 | 1_4:-11058570 | Msa0149960:CDS |
| ACAAATGTAGGGCTAGCTGC+AGG | 0.560737 | 1_4:+11058414 | None:intergenic |
| AGACGTGAGCTCCAGTCGCA+AGG | 0.560751 | 1_4:+11058711 | None:intergenic |
| GTCCTCAACAATGAAATTGT+CGG | 0.566137 | 1_4:+11059619 | None:intergenic |
| TAAAATCAGGTCCCATATGT+TGG | 0.573858 | 1_4:+11058241 | None:intergenic |
| GTTTGGTCAGCACAAATGTA+GGG | 0.574012 | 1_4:+11058403 | None:intergenic |
| CCCGTAGCAAGAGGACTCGT+GGG | 0.574146 | 1_4:-11058737 | Msa0149960:CDS |
| ATCGTAAAGTGTTGGAGCTG+CGG | 0.574417 | 1_4:-11058368 | Msa0149960:CDS |
| TTGGGTTGGGAAAGCTCACG+GGG | 0.578980 | 1_4:+11058807 | None:intergenic |
| CAGCTAAGGCCCGTAGCAAG+AGG | 0.579929 | 1_4:-11058746 | Msa0149960:CDS |
| GGCCGAGTCAAGGTTGGTGT+CGG | 0.584263 | 1_4:+11059550 | None:intergenic |
| TTAGGCCCGGTTCGCCATTG+TGG | 0.587065 | 1_4:+11058507 | None:intergenic |
| TTAGCTCGTCATCATTGTCC+GGG | 0.587117 | 1_4:-11059478 | Msa0149960:CDS |
| GCAACTGATATCAGGCATGA+AGG | 0.589173 | 1_4:-11058850 | Msa0149960:CDS |
| TTGTGGTGTAAGATACAAGT+CGG | 0.589234 | 1_4:-11058460 | Msa0149960:CDS |
| AGTTGACTGTGGCCGAGTCA+AGG | 0.589310 | 1_4:+11059540 | None:intergenic |
| CTGCTTCCTTGGAACAGTGA+CGG | 0.590093 | 1_4:+11058617 | None:intergenic |
| ATTCCCTACGTAGGAATGGA+AGG | 0.590186 | 1_4:-11059692 | None:intergenic |
| ATTGTCGGTAGTGTTGTTGT+CGG | 0.590207 | 1_4:+11059634 | None:intergenic |
| GGTCAGGTGGAGATGGTCGG+AGG | 0.590443 | 1_4:-11058557 | Msa0149960:CDS |
| GTCGGTAGTGTTGTTGTCGG+AGG | 0.590547 | 1_4:+11059637 | None:intergenic |
| TACCTACCGTCACTGTTCCA+AGG | 0.593877 | 1_4:-11058623 | Msa0149960:CDS |
| CGTCGTCGACGTCATTGTTG+AGG | 0.596242 | 1_4:+11059588 | None:intergenic |
| ATGGCTTTCCAATGTTGTTG+AGG | 0.597478 | 1_4:-11058904 | Msa0149960:CDS |
| AACGACATTAGGGTCGCACC+CGG | 0.603894 | 1_4:+11059460 | None:intergenic |
| CAACTCGCATCGTAAAGTGT+TGG | 0.604228 | 1_4:-11058376 | Msa0149960:CDS |
| CTCTTCCTCCACCGTTACCG+TGG | 0.606184 | 1_4:-11059510 | Msa0149960:CDS |
| TGTGGTGTAAGATACAAGTC+GGG | 0.608929 | 1_4:-11058459 | Msa0149960:CDS |
| CGTCATTGTTGAGGTTAAGG+AGG | 0.612987 | 1_4:+11059597 | None:intergenic |
| GACTGTGGCCGAGTCAAGGT+TGG | 0.614521 | 1_4:+11059544 | None:intergenic |
| GTAAAGTGTTGGAGCTGCGG+AGG | 0.616605 | 1_4:-11058365 | Msa0149960:CDS |
| ACGTGAGCTCCAGTCGCAAG+GGG | 0.619626 | 1_4:+11058713 | None:intergenic |
| AACACCGTCTTCTTCTGAGT+CGG | 0.619749 | 1_4:-11058670 | Msa0149960:CDS |
| GCTATTGACCACGGTAACGG+TGG | 0.631846 | 1_4:+11059502 | None:intergenic |
| GAAGAAAGGACAGTGACGGA+GGG | 0.637953 | 1_4:-11058578 | Msa0149960:CDS |
| AAAACATTATGCAACGCTTG+TGG | 0.638941 | 1_4:-11058477 | Msa0149960:CDS |
| CAGTGACGGTAGGTAAGATG+GGG | 0.639748 | 1_4:+11058631 | None:intergenic |
| CCAAGAAGAAAGGACAGTGA+CGG | 0.640630 | 1_4:-11058582 | Msa0149960:CDS |
| AGAAGAAAGGACAGTGACGG+AGG | 0.643844 | 1_4:-11058579 | Msa0149960:CDS |
| GGAGGCAGAAGGAAATGTTG+CGG | 0.674514 | 1_4:-11058347 | Msa0149960:CDS |
| TTCCTTGGAACAGTGACGGT+AGG | 0.684302 | 1_4:+11058621 | None:intergenic |
| GGTAACGGTGGAGGAAGAGG+CGG | 0.684503 | 1_4:+11059514 | None:intergenic |
| TATAATATACCGGAACACAC+AGG | 0.691414 | 1_4:+11059390 | None:intergenic |
| AAACAGTCCTATATTCAACA+AGG | 0.707758 | 1_4:-11058781 | Msa0149960:CDS |
| AGTTCCGACTCAGAAGAAGA+CGG | 0.714701 | 1_4:+11058666 | None:intergenic |
| CGAGCTAACGCTATTGACCA+CGG | 0.719172 | 1_4:+11059493 | None:intergenic |
| CGTGAGCTCCAGTCGCAAGG+GGG | 0.723454 | 1_4:+11058714 | None:intergenic |
| TGACAGACAAGACACCACAA+TGG | 0.724676 | 1_4:-11058521 | Msa0149960:CDS |
| AGAGGCGGTTGAGTTGACTG+TGG | 0.744548 | 1_4:+11059529 | None:intergenic |
| AGTGACGGTAGGTAAGATGG+GGG | 0.768674 | 1_4:+11058632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATACACATATAATATAC+CGG | + | chr1_4:11058527-11058546 | None:intergenic | 20.0% |
| !!! | TTTTGTGATACTCAATAATT+TGG | + | chr1_4:11058826-11058845 | None:intergenic | 20.0% |
| !! | CATATACACATATAATATAC+CGG | + | chr1_4:11058527-11058546 | None:intergenic | 20.0% |
| !!! | TTTTGTGATACTCAATAATT+TGG | + | chr1_4:11058826-11058845 | None:intergenic | 20.0% |
| ! | CTGAAATTATTGGCAAAAAA+GGG | + | chr1_4:11058708-11058727 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTCCTGAAATTAT+TGG | + | chr1_4:11058718-11058737 | None:intergenic | 25.0% |
| !! | TCTGTGTTGAAATTTGAAAT+AGG | - | chr1_4:11058955-11058974 | Msa0149960:intron | 25.0% |
| ! | AAAACTTCCTTGTTGAATAT+AGG | + | chr1_4:11059133-11059152 | None:intergenic | 25.0% |
| !! | TATATTCAACAAGGAAGTTT+TGG | - | chr1_4:11059132-11059151 | Msa0149960:intron | 25.0% |
| ! | AATCAAGTAATCATCATTGT+TGG | + | chr1_4:11059641-11059660 | None:intergenic | 25.0% |
| ! | CTGAAATTATTGGCAAAAAA+GGG | + | chr1_4:11058708-11058727 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTCCTGAAATTAT+TGG | + | chr1_4:11058718-11058737 | None:intergenic | 25.0% |
| !! | TCTGTGTTGAAATTTGAAAT+AGG | - | chr1_4:11058955-11058974 | Msa0149960:intron | 25.0% |
| ! | AAAACTTCCTTGTTGAATAT+AGG | + | chr1_4:11059133-11059152 | None:intergenic | 25.0% |
| !! | TATATTCAACAAGGAAGTTT+TGG | - | chr1_4:11059132-11059151 | Msa0149960:intron | 25.0% |
| ! | AATCAAGTAATCATCATTGT+TGG | + | chr1_4:11059641-11059660 | None:intergenic | 25.0% |
| ! | GCATGAGTTAGAAATTTTCA+TGG | + | chr1_4:11058643-11058662 | None:intergenic | 30.0% |
| CCTGAAATTATTGGCAAAAA+AGG | + | chr1_4:11058709-11058728 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCCAATAATTTC+AGG | - | chr1_4:11058706-11058725 | Msa0149960:CDS | 30.0% |
| TAGGCTAAATACAACAGAAT+GGG | - | chr1_4:11058745-11058764 | Msa0149960:CDS | 30.0% | |
| ! | TGTTTCAAGAGCATATATAG+AGG | - | chr1_4:11058921-11058940 | Msa0149960:CDS | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | - | chr1_4:11058958-11058977 | Msa0149960:intron | 30.0% |
| TGTTGAATATAGGACTGTTT+CGG | + | chr1_4:11059123-11059142 | None:intergenic | 30.0% | |
| AAACAGTCCTATATTCAACA+AGG | - | chr1_4:11059123-11059142 | Msa0149960:intron | 30.0% | |
| !!! | GTTGTAAAATCTGGTTTTGT+TGG | + | chr1_4:11059594-11059613 | None:intergenic | 30.0% |
| TACTCTGATGTTGTAAAATC+TGG | + | chr1_4:11059603-11059622 | None:intergenic | 30.0% | |
| TTACTTGATTCACCAACATA+TGG | - | chr1_4:11059651-11059670 | Msa0149960:CDS | 30.0% | |
| TACTTGATTCACCAACATAT+GGG | - | chr1_4:11059652-11059671 | Msa0149960:CDS | 30.0% | |
| ! | GCATGAGTTAGAAATTTTCA+TGG | + | chr1_4:11058643-11058662 | None:intergenic | 30.0% |
| CCTGAAATTATTGGCAAAAA+AGG | + | chr1_4:11058709-11058728 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCCAATAATTTC+AGG | - | chr1_4:11058706-11058725 | Msa0149960:CDS | 30.0% |
| TAGGCTAAATACAACAGAAT+GGG | - | chr1_4:11058745-11058764 | Msa0149960:CDS | 30.0% | |
| ! | TGTTTCAAGAGCATATATAG+AGG | - | chr1_4:11058921-11058940 | Msa0149960:CDS | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | - | chr1_4:11058958-11058977 | Msa0149960:intron | 30.0% |
| TGTTGAATATAGGACTGTTT+CGG | + | chr1_4:11059123-11059142 | None:intergenic | 30.0% | |
| AAACAGTCCTATATTCAACA+AGG | - | chr1_4:11059123-11059142 | Msa0149960:intron | 30.0% | |
| !!! | GTTGTAAAATCTGGTTTTGT+TGG | + | chr1_4:11059594-11059613 | None:intergenic | 30.0% |
| TACTCTGATGTTGTAAAATC+TGG | + | chr1_4:11059603-11059622 | None:intergenic | 30.0% | |
| TTACTTGATTCACCAACATA+TGG | - | chr1_4:11059651-11059670 | Msa0149960:CDS | 30.0% | |
| TACTTGATTCACCAACATAT+GGG | - | chr1_4:11059652-11059671 | Msa0149960:CDS | 30.0% | |
| TACCGACAATTTCATTGTTG+AGG | - | chr1_4:11058283-11058302 | Msa0149960:CDS | 35.0% | |
| GTCCTCAACAATGAAATTGT+CGG | + | chr1_4:11058288-11058307 | None:intergenic | 35.0% | |
| CAATATCAGGAACGACATTA+GGG | + | chr1_4:11058457-11058476 | None:intergenic | 35.0% | |
| AAATTCTGACAGCCAATATC+AGG | + | chr1_4:11058470-11058489 | None:intergenic | 35.0% | |
| TATAATATACCGGAACACAC+AGG | + | chr1_4:11058517-11058536 | None:intergenic | 35.0% | |
| AGGAGAAAAAACAACTAGCT+AGG | - | chr1_4:11058726-11058745 | Msa0149960:CDS | 35.0% | |
| CTAGGCTAAATACAACAGAA+TGG | - | chr1_4:11058744-11058763 | Msa0149960:CDS | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | - | chr1_4:11058746-11058765 | Msa0149960:CDS | 35.0% | |
| TGAAATAGGAGGATGCTTTA+CGG | - | chr1_4:11058969-11058988 | Msa0149960:intron | 35.0% | |
| AAACGATTCCTCAACAACAT+TGG | + | chr1_4:11059011-11059030 | None:intergenic | 35.0% | |
| CAAAAGATGCAACTGATATC+AGG | - | chr1_4:11059046-11059065 | Msa0149960:intron | 35.0% | |
| AATATAGGACTGTTTCGGTT+GGG | + | chr1_4:11059118-11059137 | None:intergenic | 35.0% | |
| !! | AAGCGTTGCATAATGTTTTC+GGG | + | chr1_4:11059426-11059445 | None:intergenic | 35.0% |
| !! | CAAGCGTTGCATAATGTTTT+CGG | + | chr1_4:11059427-11059446 | None:intergenic | 35.0% |
| AAAACATTATGCAACGCTTG+TGG | - | chr1_4:11059427-11059446 | Msa0149960:CDS | 35.0% | |
| TTGTGGTGTAAGATACAAGT+CGG | - | chr1_4:11059444-11059463 | Msa0149960:CDS | 35.0% | |
| !!! | AAATCTGGTTTTGTTGGTGT+TGG | + | chr1_4:11059588-11059607 | None:intergenic | 35.0% |
| TAAAATCAGGTCCCATATGT+TGG | + | chr1_4:11059666-11059685 | None:intergenic | 35.0% | |
| ! | AACATATGGGACCTGATTTT+AGG | - | chr1_4:11059665-11059684 | Msa0149960:CDS | 35.0% |
| TACATCATCTGCCTAAAATC+AGG | + | chr1_4:11059679-11059698 | None:intergenic | 35.0% | |
| TACCGACAATTTCATTGTTG+AGG | - | chr1_4:11058283-11058302 | Msa0149960:CDS | 35.0% | |
| GTCCTCAACAATGAAATTGT+CGG | + | chr1_4:11058288-11058307 | None:intergenic | 35.0% | |
| CAATATCAGGAACGACATTA+GGG | + | chr1_4:11058457-11058476 | None:intergenic | 35.0% | |
| AAATTCTGACAGCCAATATC+AGG | + | chr1_4:11058470-11058489 | None:intergenic | 35.0% | |
| TATAATATACCGGAACACAC+AGG | + | chr1_4:11058517-11058536 | None:intergenic | 35.0% | |
| AGGAGAAAAAACAACTAGCT+AGG | - | chr1_4:11058726-11058745 | Msa0149960:CDS | 35.0% | |
| CTAGGCTAAATACAACAGAA+TGG | - | chr1_4:11058744-11058763 | Msa0149960:CDS | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | - | chr1_4:11058746-11058765 | Msa0149960:CDS | 35.0% | |
| TGAAATAGGAGGATGCTTTA+CGG | - | chr1_4:11058969-11058988 | Msa0149960:intron | 35.0% | |
| AAACGATTCCTCAACAACAT+TGG | + | chr1_4:11059011-11059030 | None:intergenic | 35.0% | |
| CAAAAGATGCAACTGATATC+AGG | - | chr1_4:11059046-11059065 | Msa0149960:intron | 35.0% | |
| AATATAGGACTGTTTCGGTT+GGG | + | chr1_4:11059118-11059137 | None:intergenic | 35.0% | |
| !! | AAGCGTTGCATAATGTTTTC+GGG | + | chr1_4:11059426-11059445 | None:intergenic | 35.0% |
| !! | CAAGCGTTGCATAATGTTTT+CGG | + | chr1_4:11059427-11059446 | None:intergenic | 35.0% |
| AAAACATTATGCAACGCTTG+TGG | - | chr1_4:11059427-11059446 | Msa0149960:CDS | 35.0% | |
| TTGTGGTGTAAGATACAAGT+CGG | - | chr1_4:11059444-11059463 | Msa0149960:CDS | 35.0% | |
| !!! | AAATCTGGTTTTGTTGGTGT+TGG | + | chr1_4:11059588-11059607 | None:intergenic | 35.0% |
| TAAAATCAGGTCCCATATGT+TGG | + | chr1_4:11059666-11059685 | None:intergenic | 35.0% | |
| ! | AACATATGGGACCTGATTTT+AGG | - | chr1_4:11059665-11059684 | Msa0149960:CDS | 35.0% |
| TACATCATCTGCCTAAAATC+AGG | + | chr1_4:11059679-11059698 | None:intergenic | 35.0% | |
| ! | GGTGGTTTGGAAAATGTTGT+TGG | + | chr1_4:11058243-11058262 | None:intergenic | 40.0% |
| ! | ATTGTCGGTAGTGTTGTTGT+CGG | + | chr1_4:11058273-11058292 | None:intergenic | 40.0% |
| CCAATATCAGGAACGACATT+AGG | + | chr1_4:11058458-11058477 | None:intergenic | 40.0% | |
| CCTAATGTCGTTCCTGATAT+TGG | - | chr1_4:11058455-11058474 | Msa0149960:CDS | 40.0% | |
| ! | TTTTCTGACAGCCATTTCTC+CGG | - | chr1_4:11058488-11058507 | Msa0149960:CDS | 40.0% |
| GAAATAGGAGGATGCTTTAC+GGG | - | chr1_4:11058970-11058989 | Msa0149960:intron | 40.0% | |
| ATGGCTTTCCAATGTTGTTG+AGG | - | chr1_4:11059000-11059019 | Msa0149960:intron | 40.0% | |
| GAATATAGGACTGTTTCGGT+TGG | + | chr1_4:11059119-11059138 | None:intergenic | 40.0% | |
| AAAGACTGCTCCAAGAAGAA+AGG | - | chr1_4:11059312-11059331 | Msa0149960:intron | 40.0% | |
| !! | CATAATGTTTTCGGGCCATT+AGG | + | chr1_4:11059418-11059437 | None:intergenic | 40.0% |
| TGTGGTGTAAGATACAAGTC+GGG | - | chr1_4:11059445-11059464 | Msa0149960:CDS | 40.0% | |
| GTTTGGTCAGCACAAATGTA+GGG | + | chr1_4:11059504-11059523 | None:intergenic | 40.0% | |
| TGTTTGGTCAGCACAAATGT+AGG | + | chr1_4:11059505-11059524 | None:intergenic | 40.0% | |
| ! | GGTGGTTTGGAAAATGTTGT+TGG | + | chr1_4:11058243-11058262 | None:intergenic | 40.0% |
| ! | ATTGTCGGTAGTGTTGTTGT+CGG | + | chr1_4:11058273-11058292 | None:intergenic | 40.0% |
| CCAATATCAGGAACGACATT+AGG | + | chr1_4:11058458-11058477 | None:intergenic | 40.0% | |
| CCTAATGTCGTTCCTGATAT+TGG | - | chr1_4:11058455-11058474 | Msa0149960:CDS | 40.0% | |
| ! | TTTTCTGACAGCCATTTCTC+CGG | - | chr1_4:11058488-11058507 | Msa0149960:CDS | 40.0% |
| GAAATAGGAGGATGCTTTAC+GGG | - | chr1_4:11058970-11058989 | Msa0149960:intron | 40.0% | |
| ATGGCTTTCCAATGTTGTTG+AGG | - | chr1_4:11059000-11059019 | Msa0149960:intron | 40.0% | |
| GAATATAGGACTGTTTCGGT+TGG | + | chr1_4:11059119-11059138 | None:intergenic | 40.0% | |
| AAAGACTGCTCCAAGAAGAA+AGG | - | chr1_4:11059312-11059331 | Msa0149960:intron | 40.0% | |
| !! | CATAATGTTTTCGGGCCATT+AGG | + | chr1_4:11059418-11059437 | None:intergenic | 40.0% |
| TGTGGTGTAAGATACAAGTC+GGG | - | chr1_4:11059445-11059464 | Msa0149960:CDS | 40.0% | |
| GTTTGGTCAGCACAAATGTA+GGG | + | chr1_4:11059504-11059523 | None:intergenic | 40.0% | |
| TGTTTGGTCAGCACAAATGT+AGG | + | chr1_4:11059505-11059524 | None:intergenic | 40.0% | |
| ! | AGTGTTGTTGTCGGAGGAAA+AGG | + | chr1_4:11058264-11058283 | None:intergenic | 45.0% |
| CGTCATTGTTGAGGTTAAGG+AGG | + | chr1_4:11058310-11058329 | None:intergenic | 45.0% | |
| CGACGTCATTGTTGAGGTTA+AGG | + | chr1_4:11058313-11058332 | None:intergenic | 45.0% | |
| !! | AAGGTTGGTGTCGGAAATGA+TGG | + | chr1_4:11058348-11058367 | None:intergenic | 45.0% |
| AACGCTATTGACCACGGTAA+CGG | + | chr1_4:11058408-11058427 | None:intergenic | 45.0% | |
| GTTAGCTCGTCATCATTGTC+CGG | - | chr1_4:11058425-11058444 | Msa0149960:CDS | 45.0% | |
| TTAGCTCGTCATCATTGTCC+GGG | - | chr1_4:11058426-11058445 | Msa0149960:CDS | 45.0% | |
| ACAGAATGGGGCACATTTCA+CGG | - | chr1_4:11058758-11058777 | Msa0149960:CDS | 45.0% | |
| CAACATTGGAAAGCCATTCC+AGG | + | chr1_4:11058997-11059016 | None:intergenic | 45.0% | |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | - | chr1_4:11059018-11059037 | Msa0149960:intron | 45.0% |
| GCAACTGATATCAGGCATGA+AGG | - | chr1_4:11059054-11059073 | Msa0149960:intron | 45.0% | |
| !!! | GGAAGTTTTGGTTCCAGCTA+AGG | - | chr1_4:11059144-11059163 | Msa0149960:intron | 45.0% |
| AACACCGTCTTCTTCTGAGT+CGG | - | chr1_4:11059234-11059253 | Msa0149960:intron | 45.0% | |
| AGTTCCGACTCAGAAGAAGA+CGG | + | chr1_4:11059241-11059260 | None:intergenic | 45.0% | |
| ACAGTGACGGTAGGTAAGAT+GGG | + | chr1_4:11059277-11059296 | None:intergenic | 45.0% | |
| AACAGTGACGGTAGGTAAGA+TGG | + | chr1_4:11059278-11059297 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGGACAGTGA+CGG | - | chr1_4:11059322-11059341 | Msa0149960:intron | 45.0% | |
| TGACAGACAAGACACCACAA+TGG | - | chr1_4:11059383-11059402 | Msa0149960:intron | 45.0% | |
| AAGATACAAGTCGGGTCGAT+TGG | - | chr1_4:11059453-11059472 | Msa0149960:CDS | 45.0% | |
| CAACACTTTACGATGCGAGT+TGG | + | chr1_4:11059530-11059549 | None:intergenic | 45.0% | |
| CAACTCGCATCGTAAAGTGT+TGG | - | chr1_4:11059528-11059547 | Msa0149960:CDS | 45.0% | |
| !! | ATCGTAAAGTGTTGGAGCTG+CGG | - | chr1_4:11059536-11059555 | Msa0149960:CDS | 45.0% |
| ! | AGTGTTGTTGTCGGAGGAAA+AGG | + | chr1_4:11058264-11058283 | None:intergenic | 45.0% |
| CGTCATTGTTGAGGTTAAGG+AGG | + | chr1_4:11058310-11058329 | None:intergenic | 45.0% | |
| CGACGTCATTGTTGAGGTTA+AGG | + | chr1_4:11058313-11058332 | None:intergenic | 45.0% | |
| !! | AAGGTTGGTGTCGGAAATGA+TGG | + | chr1_4:11058348-11058367 | None:intergenic | 45.0% |
| AACGCTATTGACCACGGTAA+CGG | + | chr1_4:11058408-11058427 | None:intergenic | 45.0% | |
| GTTAGCTCGTCATCATTGTC+CGG | - | chr1_4:11058425-11058444 | Msa0149960:CDS | 45.0% | |
| TTAGCTCGTCATCATTGTCC+GGG | - | chr1_4:11058426-11058445 | Msa0149960:CDS | 45.0% | |
| ACAGAATGGGGCACATTTCA+CGG | - | chr1_4:11058758-11058777 | Msa0149960:CDS | 45.0% | |
| CAACATTGGAAAGCCATTCC+AGG | + | chr1_4:11058997-11059016 | None:intergenic | 45.0% | |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | - | chr1_4:11059018-11059037 | Msa0149960:intron | 45.0% |
| GCAACTGATATCAGGCATGA+AGG | - | chr1_4:11059054-11059073 | Msa0149960:intron | 45.0% | |
| !!! | GGAAGTTTTGGTTCCAGCTA+AGG | - | chr1_4:11059144-11059163 | Msa0149960:intron | 45.0% |
| AACACCGTCTTCTTCTGAGT+CGG | - | chr1_4:11059234-11059253 | Msa0149960:intron | 45.0% | |
| AGTTCCGACTCAGAAGAAGA+CGG | + | chr1_4:11059241-11059260 | None:intergenic | 45.0% | |
| ACAGTGACGGTAGGTAAGAT+GGG | + | chr1_4:11059277-11059296 | None:intergenic | 45.0% | |
| AACAGTGACGGTAGGTAAGA+TGG | + | chr1_4:11059278-11059297 | None:intergenic | 45.0% | |
| CCAAGAAGAAAGGACAGTGA+CGG | - | chr1_4:11059322-11059341 | Msa0149960:intron | 45.0% | |
| TGACAGACAAGACACCACAA+TGG | - | chr1_4:11059383-11059402 | Msa0149960:intron | 45.0% | |
| AAGATACAAGTCGGGTCGAT+TGG | - | chr1_4:11059453-11059472 | Msa0149960:CDS | 45.0% | |
| CAACACTTTACGATGCGAGT+TGG | + | chr1_4:11059530-11059549 | None:intergenic | 45.0% | |
| CAACTCGCATCGTAAAGTGT+TGG | - | chr1_4:11059528-11059547 | Msa0149960:CDS | 45.0% | |
| !! | ATCGTAAAGTGTTGGAGCTG+CGG | - | chr1_4:11059536-11059555 | Msa0149960:CDS | 45.0% |
| TGTCGGAGGAAAAGGTGGTT+TGG | + | chr1_4:11058256-11058275 | None:intergenic | 50.0% | |
| GTTGTTGTCGGAGGAAAAGG+TGG | + | chr1_4:11058261-11058280 | None:intergenic | 50.0% | |
| TTCCGACACCAACCTTGACT+CGG | - | chr1_4:11058352-11058371 | Msa0149960:CDS | 50.0% | |
| CGAGCTAACGCTATTGACCA+CGG | + | chr1_4:11058414-11058433 | None:intergenic | 50.0% | |
| ATGCTTTACGGGACCTGGAA+TGG | - | chr1_4:11058981-11059000 | Msa0149960:intron | 50.0% | |
| AGGACTGTTTCGGTTGGGTT+GGG | + | chr1_4:11059113-11059132 | None:intergenic | 50.0% | |
| TAGGACTGTTTCGGTTGGGT+TGG | + | chr1_4:11059114-11059133 | None:intergenic | 50.0% | |
| GTAAGATGGGGGTGGGAATA+AGG | + | chr1_4:11059264-11059283 | None:intergenic | 50.0% | |
| AGTGACGGTAGGTAAGATGG+GGG | + | chr1_4:11059275-11059294 | None:intergenic | 50.0% | |
| CAGTGACGGTAGGTAAGATG+GGG | + | chr1_4:11059276-11059295 | None:intergenic | 50.0% | |
| TACCTACCGTCACTGTTCCA+AGG | - | chr1_4:11059281-11059300 | Msa0149960:intron | 50.0% | |
| TTCCTTGGAACAGTGACGGT+AGG | + | chr1_4:11059286-11059305 | None:intergenic | 50.0% | |
| CTGCTTCCTTGGAACAGTGA+CGG | + | chr1_4:11059290-11059309 | None:intergenic | 50.0% | |
| CCGTCACTGTCCTTTCTTCT+TGG | + | chr1_4:11059325-11059344 | None:intergenic | 50.0% | |
| AGAAGAAAGGACAGTGACGG+AGG | - | chr1_4:11059325-11059344 | Msa0149960:intron | 50.0% | |
| ! | GAAGAAAGGACAGTGACGGA+GGG | - | chr1_4:11059326-11059345 | Msa0149960:intron | 50.0% |
| AAGACACCACAATGGCGAAC+CGG | - | chr1_4:11059391-11059410 | Msa0149960:intron | 50.0% | |
| ! | GTCGATTGGTGCCTGAATAC+AGG | - | chr1_4:11059467-11059486 | Msa0149960:CDS | 50.0% |
| !! | ACAAATGTAGGGCTAGCTGC+AGG | + | chr1_4:11059493-11059512 | None:intergenic | 50.0% |
| ! | ACGATGCGAGTTGGAGTGTT+TGG | + | chr1_4:11059521-11059540 | None:intergenic | 50.0% |
| GGAGGCAGAAGGAAATGTTG+CGG | - | chr1_4:11059557-11059576 | Msa0149960:CDS | 50.0% | |
| GAGGCAGAAGGAAATGTTGC+GGG | - | chr1_4:11059558-11059577 | Msa0149960:CDS | 50.0% | |
| TGTCGGAGGAAAAGGTGGTT+TGG | + | chr1_4:11058256-11058275 | None:intergenic | 50.0% | |
| GTTGTTGTCGGAGGAAAAGG+TGG | + | chr1_4:11058261-11058280 | None:intergenic | 50.0% | |
| TTCCGACACCAACCTTGACT+CGG | - | chr1_4:11058352-11058371 | Msa0149960:CDS | 50.0% | |
| CGAGCTAACGCTATTGACCA+CGG | + | chr1_4:11058414-11058433 | None:intergenic | 50.0% | |
| ATGCTTTACGGGACCTGGAA+TGG | - | chr1_4:11058981-11059000 | Msa0149960:intron | 50.0% | |
| AGGACTGTTTCGGTTGGGTT+GGG | + | chr1_4:11059113-11059132 | None:intergenic | 50.0% | |
| TAGGACTGTTTCGGTTGGGT+TGG | + | chr1_4:11059114-11059133 | None:intergenic | 50.0% | |
| GTAAGATGGGGGTGGGAATA+AGG | + | chr1_4:11059264-11059283 | None:intergenic | 50.0% | |
| AGTGACGGTAGGTAAGATGG+GGG | + | chr1_4:11059275-11059294 | None:intergenic | 50.0% | |
| CAGTGACGGTAGGTAAGATG+GGG | + | chr1_4:11059276-11059295 | None:intergenic | 50.0% | |
| TACCTACCGTCACTGTTCCA+AGG | - | chr1_4:11059281-11059300 | Msa0149960:intron | 50.0% | |
| TTCCTTGGAACAGTGACGGT+AGG | + | chr1_4:11059286-11059305 | None:intergenic | 50.0% | |
| CTGCTTCCTTGGAACAGTGA+CGG | + | chr1_4:11059290-11059309 | None:intergenic | 50.0% | |
| CCGTCACTGTCCTTTCTTCT+TGG | + | chr1_4:11059325-11059344 | None:intergenic | 50.0% | |
| AGAAGAAAGGACAGTGACGG+AGG | - | chr1_4:11059325-11059344 | Msa0149960:intron | 50.0% | |
| ! | GAAGAAAGGACAGTGACGGA+GGG | - | chr1_4:11059326-11059345 | Msa0149960:intron | 50.0% |
| AAGACACCACAATGGCGAAC+CGG | - | chr1_4:11059391-11059410 | Msa0149960:intron | 50.0% | |
| ! | GTCGATTGGTGCCTGAATAC+AGG | - | chr1_4:11059467-11059486 | Msa0149960:CDS | 50.0% |
| !! | ACAAATGTAGGGCTAGCTGC+AGG | + | chr1_4:11059493-11059512 | None:intergenic | 50.0% |
| ! | ACGATGCGAGTTGGAGTGTT+TGG | + | chr1_4:11059521-11059540 | None:intergenic | 50.0% |
| GGAGGCAGAAGGAAATGTTG+CGG | - | chr1_4:11059557-11059576 | Msa0149960:CDS | 50.0% | |
| GAGGCAGAAGGAAATGTTGC+GGG | - | chr1_4:11059558-11059577 | Msa0149960:CDS | 50.0% | |
| ! | GTCGGTAGTGTTGTTGTCGG+AGG | + | chr1_4:11058270-11058289 | None:intergenic | 55.0% |
| CGTCGTCGACGTCATTGTTG+AGG | + | chr1_4:11058319-11058338 | None:intergenic | 55.0% | |
| AGTTGACTGTGGCCGAGTCA+AGG | + | chr1_4:11058367-11058386 | None:intergenic | 55.0% | |
| !! | AGAGGCGGTTGAGTTGACTG+TGG | + | chr1_4:11058378-11058397 | None:intergenic | 55.0% |
| ! | ATTGACCACGGTAACGGTGG+AGG | + | chr1_4:11058402-11058421 | None:intergenic | 55.0% |
| ! | GCTATTGACCACGGTAACGG+TGG | + | chr1_4:11058405-11058424 | None:intergenic | 55.0% |
| AACGACATTAGGGTCGCACC+CGG | + | chr1_4:11058447-11058466 | None:intergenic | 55.0% | |
| CACACAGGTCTCCGGAGAAA+TGG | + | chr1_4:11058502-11058521 | None:intergenic | 55.0% | |
| TACCGGAACACACAGGTCTC+CGG | + | chr1_4:11058510-11058529 | None:intergenic | 55.0% | |
| ! | AGGCATGAAGGTGCGAAACC+AGG | - | chr1_4:11059066-11059085 | Msa0149960:intron | 55.0% |
| !! | TTGGGTTGGGAAAGCTCACG+GGG | + | chr1_4:11059100-11059119 | None:intergenic | 55.0% |
| !! | GTTGGGTTGGGAAAGCTCAC+GGG | + | chr1_4:11059101-11059120 | None:intergenic | 55.0% |
| !! | GGTTGGGTTGGGAAAGCTCA+CGG | + | chr1_4:11059102-11059121 | None:intergenic | 55.0% |
| ACGGTAGGTAAGATGGGGGT+GGG | + | chr1_4:11059271-11059290 | None:intergenic | 55.0% | |
| CGTCACTGTTCCAAGGAAGC+AGG | - | chr1_4:11059288-11059307 | Msa0149960:intron | 55.0% | |
| GCAGTCTTTGCCTGCTTCCT+TGG | + | chr1_4:11059301-11059320 | None:intergenic | 55.0% | |
| AGACACCACAATGGCGAACC+GGG | - | chr1_4:11059392-11059411 | Msa0149960:intron | 55.0% | |
| !! | TGTTTTCGGGCCATTAGGCC+CGG | + | chr1_4:11059413-11059432 | None:intergenic | 55.0% |
| CTAGCTGCAGGCCTGTATTC+AGG | + | chr1_4:11059481-11059500 | None:intergenic | 55.0% | |
| !! | GTAAAGTGTTGGAGCTGCGG+AGG | - | chr1_4:11059539-11059558 | Msa0149960:CDS | 55.0% |
| ! | GTCGGTAGTGTTGTTGTCGG+AGG | + | chr1_4:11058270-11058289 | None:intergenic | 55.0% |
| CGTCGTCGACGTCATTGTTG+AGG | + | chr1_4:11058319-11058338 | None:intergenic | 55.0% | |
| AGTTGACTGTGGCCGAGTCA+AGG | + | chr1_4:11058367-11058386 | None:intergenic | 55.0% | |
| !! | AGAGGCGGTTGAGTTGACTG+TGG | + | chr1_4:11058378-11058397 | None:intergenic | 55.0% |
| ! | ATTGACCACGGTAACGGTGG+AGG | + | chr1_4:11058402-11058421 | None:intergenic | 55.0% |
| ! | GCTATTGACCACGGTAACGG+TGG | + | chr1_4:11058405-11058424 | None:intergenic | 55.0% |
| AACGACATTAGGGTCGCACC+CGG | + | chr1_4:11058447-11058466 | None:intergenic | 55.0% | |
| CACACAGGTCTCCGGAGAAA+TGG | + | chr1_4:11058502-11058521 | None:intergenic | 55.0% | |
| TACCGGAACACACAGGTCTC+CGG | + | chr1_4:11058510-11058529 | None:intergenic | 55.0% | |
| ! | AGGCATGAAGGTGCGAAACC+AGG | - | chr1_4:11059066-11059085 | Msa0149960:intron | 55.0% |
| !! | TTGGGTTGGGAAAGCTCACG+GGG | + | chr1_4:11059100-11059119 | None:intergenic | 55.0% |
| !! | GTTGGGTTGGGAAAGCTCAC+GGG | + | chr1_4:11059101-11059120 | None:intergenic | 55.0% |
| !! | GGTTGGGTTGGGAAAGCTCA+CGG | + | chr1_4:11059102-11059121 | None:intergenic | 55.0% |
| ACGGTAGGTAAGATGGGGGT+GGG | + | chr1_4:11059271-11059290 | None:intergenic | 55.0% | |
| CGTCACTGTTCCAAGGAAGC+AGG | - | chr1_4:11059288-11059307 | Msa0149960:intron | 55.0% | |
| GCAGTCTTTGCCTGCTTCCT+TGG | + | chr1_4:11059301-11059320 | None:intergenic | 55.0% | |
| AGACACCACAATGGCGAACC+GGG | - | chr1_4:11059392-11059411 | Msa0149960:intron | 55.0% | |
| !! | TGTTTTCGGGCCATTAGGCC+CGG | + | chr1_4:11059413-11059432 | None:intergenic | 55.0% |
| CTAGCTGCAGGCCTGTATTC+AGG | + | chr1_4:11059481-11059500 | None:intergenic | 55.0% | |
| !! | GTAAAGTGTTGGAGCTGCGG+AGG | - | chr1_4:11059539-11059558 | Msa0149960:CDS | 55.0% |
| !! | GGCCGAGTCAAGGTTGGTGT+CGG | + | chr1_4:11058357-11058376 | None:intergenic | 60.0% |
| GACTGTGGCCGAGTCAAGGT+TGG | + | chr1_4:11058363-11058382 | None:intergenic | 60.0% | |
| ! | GGTAACGGTGGAGGAAGAGG+CGG | + | chr1_4:11058393-11058412 | None:intergenic | 60.0% |
| ! | CACGGTAACGGTGGAGGAAG+AGG | + | chr1_4:11058396-11058415 | None:intergenic | 60.0% |
| CTCTTCCTCCACCGTTACCG+TGG | - | chr1_4:11058394-11058413 | Msa0149960:CDS | 60.0% | |
| CTCCGGAGACCTGTGTGTTC+CGG | - | chr1_4:11058505-11058524 | Msa0149960:CDS | 60.0% | |
| GGAGGATGCTTTACGGGACC+TGG | - | chr1_4:11058976-11058995 | Msa0149960:intron | 60.0% | |
| CTCTTGCTACGGGCCTTAGC+TGG | + | chr1_4:11059160-11059179 | None:intergenic | 60.0% | |
| CAGCTAAGGCCCGTAGCAAG+AGG | - | chr1_4:11059158-11059177 | Msa0149960:intron | 60.0% | |
| CCCACGAGTCCTCTTGCTAC+GGG | + | chr1_4:11059170-11059189 | None:intergenic | 60.0% | |
| CCCGTAGCAAGAGGACTCGT+GGG | - | chr1_4:11059167-11059186 | Msa0149960:intron | 60.0% | |
| GCCCACGAGTCCTCTTGCTA+CGG | + | chr1_4:11059171-11059190 | None:intergenic | 60.0% | |
| ACGTGAGCTCCAGTCGCAAG+GGG | + | chr1_4:11059194-11059213 | None:intergenic | 60.0% | |
| GACGTGAGCTCCAGTCGCAA+GGG | + | chr1_4:11059195-11059214 | None:intergenic | 60.0% | |
| AGACGTGAGCTCCAGTCGCA+AGG | + | chr1_4:11059196-11059215 | None:intergenic | 60.0% | |
| GACGGTAGGTAAGATGGGGG+TGG | + | chr1_4:11059272-11059291 | None:intergenic | 60.0% | |
| ! | AAGGACAGTGACGGAGGGTC+AGG | - | chr1_4:11059331-11059350 | Msa0149960:intron | 60.0% |
| GAGGGTCAGGTGGAGATGGT+CGG | - | chr1_4:11059344-11059363 | Msa0149960:intron | 60.0% | |
| ! | TTAGGCCCGGTTCGCCATTG+TGG | + | chr1_4:11059400-11059419 | None:intergenic | 60.0% |
| CAATGGCGAACCGGGCCTAA+TGG | - | chr1_4:11059400-11059419 | Msa0149960:CDS | 60.0% | |
| !! | GGCCGAGTCAAGGTTGGTGT+CGG | + | chr1_4:11058357-11058376 | None:intergenic | 60.0% |
| GACTGTGGCCGAGTCAAGGT+TGG | + | chr1_4:11058363-11058382 | None:intergenic | 60.0% | |
| ! | GGTAACGGTGGAGGAAGAGG+CGG | + | chr1_4:11058393-11058412 | None:intergenic | 60.0% |
| ! | CACGGTAACGGTGGAGGAAG+AGG | + | chr1_4:11058396-11058415 | None:intergenic | 60.0% |
| CTCTTCCTCCACCGTTACCG+TGG | - | chr1_4:11058394-11058413 | Msa0149960:CDS | 60.0% | |
| CTCCGGAGACCTGTGTGTTC+CGG | - | chr1_4:11058505-11058524 | Msa0149960:CDS | 60.0% | |
| GGAGGATGCTTTACGGGACC+TGG | - | chr1_4:11058976-11058995 | Msa0149960:intron | 60.0% | |
| CTCTTGCTACGGGCCTTAGC+TGG | + | chr1_4:11059160-11059179 | None:intergenic | 60.0% | |
| CAGCTAAGGCCCGTAGCAAG+AGG | - | chr1_4:11059158-11059177 | Msa0149960:intron | 60.0% | |
| CCCACGAGTCCTCTTGCTAC+GGG | + | chr1_4:11059170-11059189 | None:intergenic | 60.0% | |
| CCCGTAGCAAGAGGACTCGT+GGG | - | chr1_4:11059167-11059186 | Msa0149960:intron | 60.0% | |
| GCCCACGAGTCCTCTTGCTA+CGG | + | chr1_4:11059171-11059190 | None:intergenic | 60.0% | |
| ACGTGAGCTCCAGTCGCAAG+GGG | + | chr1_4:11059194-11059213 | None:intergenic | 60.0% | |
| GACGTGAGCTCCAGTCGCAA+GGG | + | chr1_4:11059195-11059214 | None:intergenic | 60.0% | |
| AGACGTGAGCTCCAGTCGCA+AGG | + | chr1_4:11059196-11059215 | None:intergenic | 60.0% | |
| GACGGTAGGTAAGATGGGGG+TGG | + | chr1_4:11059272-11059291 | None:intergenic | 60.0% | |
| ! | AAGGACAGTGACGGAGGGTC+AGG | - | chr1_4:11059331-11059350 | Msa0149960:intron | 60.0% |
| GAGGGTCAGGTGGAGATGGT+CGG | - | chr1_4:11059344-11059363 | Msa0149960:intron | 60.0% | |
| ! | TTAGGCCCGGTTCGCCATTG+TGG | + | chr1_4:11059400-11059419 | None:intergenic | 60.0% |
| CAATGGCGAACCGGGCCTAA+TGG | - | chr1_4:11059400-11059419 | Msa0149960:CDS | 60.0% | |
| GCTCACGGGGTTCTTCGTCC+TGG | + | chr1_4:11059087-11059106 | None:intergenic | 65.0% | |
| GCCCGTAGCAAGAGGACTCG+TGG | - | chr1_4:11059166-11059185 | Msa0149960:intron | 65.0% | |
| CGTGAGCTCCAGTCGCAAGG+GGG | + | chr1_4:11059193-11059212 | None:intergenic | 65.0% | |
| ! | GACAGTGACGGAGGGTCAGG+TGG | - | chr1_4:11059334-11059353 | Msa0149960:intron | 65.0% |
| GACGGAGGGTCAGGTGGAGA+TGG | - | chr1_4:11059340-11059359 | Msa0149960:intron | 65.0% | |
| GGTCAGGTGGAGATGGTCGG+AGG | - | chr1_4:11059347-11059366 | Msa0149960:intron | 65.0% | |
| GTTGGAGCTGCGGAGGCAGA+AGG | - | chr1_4:11059546-11059565 | Msa0149960:CDS | 65.0% | |
| GCTCACGGGGTTCTTCGTCC+TGG | + | chr1_4:11059087-11059106 | None:intergenic | 65.0% | |
| GCCCGTAGCAAGAGGACTCG+TGG | - | chr1_4:11059166-11059185 | Msa0149960:intron | 65.0% | |
| CGTGAGCTCCAGTCGCAAGG+GGG | + | chr1_4:11059193-11059212 | None:intergenic | 65.0% | |
| ! | GACAGTGACGGAGGGTCAGG+TGG | - | chr1_4:11059334-11059353 | Msa0149960:intron | 65.0% |
| GACGGAGGGTCAGGTGGAGA+TGG | - | chr1_4:11059340-11059359 | Msa0149960:intron | 65.0% | |
| GGTCAGGTGGAGATGGTCGG+AGG | - | chr1_4:11059347-11059366 | Msa0149960:intron | 65.0% | |
| GTTGGAGCTGCGGAGGCAGA+AGG | - | chr1_4:11059546-11059565 | Msa0149960:CDS | 65.0% | |
| CTCGTGGGCCCCCTTGCGAC+TGG | - | chr1_4:11059182-11059201 | Msa0149960:intron | 75.0% | |
| CTCGTGGGCCCCCTTGCGAC+TGG | - | chr1_4:11059182-11059201 | Msa0149960:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 11058227 | 11059699 | 11058227 | ID=Msa0149960;Name=Msa0149960 |
| chr1_4 | mRNA | 11058227 | 11059699 | 11058227 | ID=Msa0149960-mRNA-1;Parent=Msa0149960;Name=Msa0149960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|340 |
| chr1_4 | exon | 11059400 | 11059699 | 11059400 | ID=Msa0149960-mRNA-1:exon:4638;Parent=Msa0149960-mRNA-1 |
| chr1_4 | exon | 11058227 | 11058949 | 11058227 | ID=Msa0149960-mRNA-1:exon:4637;Parent=Msa0149960-mRNA-1 |
| chr1_4 | CDS | 11059400 | 11059699 | 11059400 | ID=Msa0149960-mRNA-1:cds;Parent=Msa0149960-mRNA-1 |
| chr1_4 | CDS | 11058227 | 11058949 | 11058227 | ID=Msa0149960-mRNA-1:cds;Parent=Msa0149960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
