AlfalfaGEDB | Msa0150290

M. sativa cultivar zhongmu-4 / Msa0150290

KEGG: K09420|K09422|K21769
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006355 GO:0006357 GO:0008150 GO:0008285 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009623 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0032875 GO:0042127 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051704 GO:0051707 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0090329 GO:0097159 GO:0140110 GO:1901181 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150290	XP_013466255.2	94.237	989	49	1	1	981	1	989	0.0	1890

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150290	sp\|Q9S7G7\|MB3R1_ARATH	46.827	709	286	17	15	667	11	684	0.0	554

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150290	A0A396JN74	94.237	989	49	1	1	981	1	989	0.0	1890

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TFs/TRs:

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Gene ID	Type	Classification
Msa0150290	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150290	MtrunA17_Chr1g0157731	94.237	989	49	1	1	981	1	989	0.0	1890
Msa0150290	MtrunA17_Chr3g0139671	55.488	993	289	31	17	975	12	885	0.0	943
Msa0150290	MtrunA17_Chr7g0238631	77.143	175	39	1	27	201	50	223	7.84e-91	300
Msa0150290	MtrunA17_Chr5g0397841	59.868	152	58	1	37	185	53	204	1.71e-56	202
Msa0150290	MtrunA17_Chr3g0117511	58.252	103	43	0	89	191	181	283	2.83e-38	149
Msa0150290	MtrunA17_Chr3g0117511	39.583	96	57	1	39	134	183	277	8.17e-15	78.2
Msa0150290	MtrunA17_Chr4g0058991	61.165	103	40	0	89	191	207	309	4.86e-38	149
Msa0150290	MtrunA17_Chr4g0058991	30.714	140	82	3	8	133	164	302	4.59e-15	79.0
Msa0150290	MtrunA17_Chr4g0053431	53.211	109	51	0	90	198	4	112	2.05e-37	141
Msa0150290	MtrunA17_Chr4g0053431	37.374	99	61	1	39	137	5	102	2.24e-15	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150290	AT4G32730.5	41.142	1033	462	28	15	971	11	973	0.0	634
Msa0150290	AT4G32730.4	41.142	1033	462	28	15	971	11	973	0.0	634
Msa0150290	AT4G32730.3	41.142	1033	462	28	15	971	11	973	0.0	634
Msa0150290	AT4G32730.2	41.142	1033	462	28	15	971	11	973	0.0	634
Msa0150290	AT4G32730.1	46.827	709	286	17	15	667	11	684	0.0	554
Msa0150290	AT5G11510.3	36.837	1018	510	29	20	977	10	954	1.54e-176	539
Msa0150290	AT5G11510.1	36.837	1018	510	29	20	977	10	954	1.54e-176	539
Msa0150290	AT5G11510.4	36.837	1018	510	29	20	977	10	954	1.54e-176	539
Msa0150290	AT5G11510.5	40.119	673	330	14	20	667	10	634	1.97e-145	452
Msa0150290	AT5G11510.2	39.914	694	328	17	20	667	10	660	4.84e-143	446

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Find 222 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGCAATGGACTCCTG+AGG	0.671854	1_4:-11554429	Msa0150290:CDS
AAACAAGGAAGCATGGACAC+AGG	0.654947	1_4:-11552802	Msa0150290:CDS
AAACCCACTGAAGTCTGATA+TGG	0.388439	1_4:+11551758	None:intergenic
AAACGTGCACACAGAAATGG+AGG	0.614683	1_4:-11551270	Msa0150290:CDS
AAACTTGAACAATAGGAGCT+CGG	0.606050	1_4:-11550448	Msa0150290:CDS
AAAGAAATTGGATTCTTACT+TGG	0.426445	1_4:-11552320	Msa0150290:CDS
AAAGCTCCAGGAGATGGTTC+AGG	0.388289	1_4:-11550306	Msa0150290:CDS
AAAGTGGTGATAACAAATCT+CGG	0.586169	1_4:+11550985	None:intergenic
AAAGTTAGAGCAGCATTACA+TGG	0.498047	1_4:-11554976	Msa0150290:CDS
AAATCATGTCTGACCAATGT+AGG	0.536947	1_4:+11549119	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAGTTAGAAGAATCGAAA+CGG	+	chr1_4:11549235-11549254	None:intergenic	30.0%
ATCGAAAATCTCTTTGTTCT+TGG	-	chr1_4:11549278-11549297	Msa0150290:three_prime_UTR	30.0%
TTCAACACTGAATAAAGCAA+AGG	+	chr1_4:11549444-11549463	None:intergenic	30.0%
GTGTGTGTGATATAAGTATT+AGG	-	chr1_4:11549639-11549658	Msa0150290:intron	30.0%
ATTTGTAGTAGAGTTGGAAT+TGG	-	chr1_4:11549837-11549856	Msa0150290:intron	30.0%
TTTGTAGTAGAGTTGGAATT+GGG	-	chr1_4:11549838-11549857	Msa0150290:intron	30.0%
TTATGCTAGCAAATTATGGA+CGG	-	chr1_4:11549877-11549896	Msa0150290:intron	30.0%
ACTTTCTCTACACTATCAAT+GGG	+	chr1_4:11549937-11549956	None:intergenic	30.0%
AACTTTCTCTACACTATCAA+TGG	+	chr1_4:11549938-11549957	None:intergenic	30.0%
CAATAAAAGATTAGAGTGAC+CGG	-	chr1_4:11550076-11550095	Msa0150290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	11548983	11555967	11548983	ID=Msa0150290;Name=Msa0150290
chr1_4	mRNA	11548983	11555967	11548983	ID=Msa0150290-mRNA-1;Parent=Msa0150290;Name=Msa0150290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=475\|1\|1\|1\|0.90\|0.83\|12\|317\|981
chr1_4	exon	11548983	11549383	11548983	ID=Msa0150290-mRNA-1:exon:4788;Parent=Msa0150290-mRNA-1
chr1_4	exon	11549642	11549824	11549642	ID=Msa0150290-mRNA-1:exon:4787;Parent=Msa0150290-mRNA-1
chr1_4	exon	11549914	11550025	11549914	ID=Msa0150290-mRNA-1:exon:4786;Parent=Msa0150290-mRNA-1
chr1_4	exon	11550264	11550586	11550264	ID=Msa0150290-mRNA-1:exon:4785;Parent=Msa0150290-mRNA-1
chr1_4	exon	11550665	11552384	11550665	ID=Msa0150290-mRNA-1:exon:4784;Parent=Msa0150290-mRNA-1
chr1_4	exon	11552723	11552851	11552723	ID=Msa0150290-mRNA-1:exon:4783;Parent=Msa0150290-mRNA-1
chr1_4	exon	11553370	11553473	11553370	ID=Msa0150290-mRNA-1:exon:4782;Parent=Msa0150290-mRNA-1
chr1_4	exon	11553740	11553834	11553740	ID=Msa0150290-mRNA-1:exon:4781;Parent=Msa0150290-mRNA-1
chr1_4	exon	11554255	11554312	11554255	ID=Msa0150290-mRNA-1:exon:4780;Parent=Msa0150290-mRNA-1
chr1_4	exon	11554427	11554481	11554427	ID=Msa0150290-mRNA-1:exon:4779;Parent=Msa0150290-mRNA-1
chr1_4	exon	11554976	11555157	11554976	ID=Msa0150290-mRNA-1:exon:4778;Parent=Msa0150290-mRNA-1
chr1_4	exon	11555592	11555967	11555592	ID=Msa0150290-mRNA-1:exon:4777;Parent=Msa0150290-mRNA-1
chr1_4	five_prime_UTR	11555592	11555967	11555592	ID=Msa0150290-mRNA-1:five_prime_utr;Parent=Msa0150290-mRNA-1
chr1_4	five_prime_UTR	11555059	11555157	11555059	ID=Msa0150290-mRNA-1:five_prime_utr;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11554976	11555058	11554976	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11554427	11554481	11554427	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11554255	11554312	11554255	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11553740	11553834	11553740	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11553370	11553473	11553370	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11552723	11552851	11552723	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11550665	11552384	11550665	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11550264	11550586	11550264	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11549914	11550025	11549914	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11549642	11549824	11549642	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	CDS	11549300	11549383	11549300	ID=Msa0150290-mRNA-1:cds;Parent=Msa0150290-mRNA-1
chr1_4	three_prime_UTR	11548983	11549299	11548983	ID=Msa0150290-mRNA-1:three_prime_utr;Parent=Msa0150290-mRNA-1

Gene Sequence

>Msa0150290

ATGGACGGTGAACGAATAATCGCCGTTCCTCAGGGGGAAGGGCCCATTGATAGTGTAGAGAAAGTTAGAGCAGCATTACATGGGAGGACTACTGGTCCTACAAGGCGTTCTACAAAAGGGCAATGGACTCCTGAGGAGGATGAGACATTACGAAAGGCTGTTCAGCGTTTCCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTGCAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCTGAGCTTGTTAAAGGGCCGTGGTCTAAAGAGGAAGATGACGTGATGATTGAATTGGTGAACAAATATGGGCCTAAGAAATGGTCAACTATCGCACAACATTTACCTGGACGTATTGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGGAACAAGTGGGCGGAATTAACGAAATTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCAGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAATTGCAATCTGCACCTCATGTTGGAAATCCAAGCCAATCAATGGTTGCAACATCTTCAAGGTCGCAATGTAATGAAGATGAGAATGCTTTTCAGCGGATTGAAGGAGATGAAGTTTTAGAGTGTAGTCATGAGTCAGCTAATGCTCTCCACTTTCCATCGACTAGAGAGATAACCAGTGTTGACTTACAACCTGAAGAGGAGAATAGACCAATTGAAGAATGTAGTTTTGGGATGGATCATAGTCCAAGTCAAGCATCCTGTTCAGAGCCATATCTTGTATCAATTGACGACTCAATTGACGATGTTACTATATGCATTCCAGAAATTGCTCATCACGAGGCATGCTCTTCTGAATTCAATGACCAGTACTCACATGAACCTGGAAATTCCATAAATGAGGATCGCCACCTTAACTTACATTCCTTACCCAATATTTCATCAATGGACTTAGGGAAGGAATCCCCGCAGATGCAAAGAGATTGTACAGATCCTAGTGGAATACGTGACTTGGTAAATGTTCCATATCAGACTTCAGTGGGTTTAGCTGCTTCAACGCACATGGAAACTACATCTATGGATTCTGCTAAACCAGATCATATGTTGATATCTGATGACGAATGTTGCCGAGTCCTGTTTTCAGAGGCAGATAATGATAGACGTTTTATCCAAGGAGATTATAATAAAGGTGTTGGTACTGTTGAATTTTCTGGTCACCCTGCATTTGTTTGTCAATCATGTCGTATTCTGATTTTCGAAACTGGTGGAACCTCAACTCTGCCATTAACTTGTCCTCGGTGTTCTAATAGTTTCAAAGGAATGCCATCCTCCCAATCTAACCATCCAGTTCATTCTGCTGAGCCTGAGAATCAGCAGTTTGTCTCCAGAGCACCTGATAACTTCACTTATGCCAATGACATATCCAGTTCTCATTGTATTGATGCTATAGATAGTGCAGTAATGCAAGATGTTAATCAAAACTGTTGTCCAACAGATGAAAATCCAAAGCCAAACGTGCACACAGAAATGGAGGGCAACGGAGCACTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTGAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTATGACTCCGTCAAGGTTGTGGGACTCGCCATCTCGCGACGATAGTCCAGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTACGGGTACACCATCAATATTAAAGAAACGATGCCGAGATTTGTTATCACCACTTTCAGATAAAAGAATCGGCAAGAAACTTGAGACTGACACGTCATCCTCTTTGTCCAAAGCTTTTTCTATTTTGGAAGCAGATATACTTTCTCCATCTTCATTGCAAAAGTATAACTCTGGGGCTTCTGGTTTTGATGACGATAAAGAAAATTGCGGACAAGCTGATAAAGGTAAACAAGTAGAGGAGACAAATAAATCGGCAATTTTGGAAGAAAAAACGTCTCAAAGAGATGCTCTTGACAGTAATTCTCCTGGTAAGGTTAAGCAGCGACATTTTGACATTTATTCTAAAATGAAGATTGATGCTGCTGCTTCTGAGATTGTGCAACAATCTTCTGGAGTTTTGTCTGAACATGATAGGAACGACCTTTCATTATATTCATCTGATCAAGTTGGTTTTAGAGACAGGGTTATAGGTTCTAGTGTTAGAACTCCCAGAAACTTGAACAATAGGAGCTCGGAAACAGCTCCAAACCAGAGCATCCCTTCAAAATTATCTTCTGAGAATCCTTGCAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAATCTTACAGTTTCTGTTAATCGTGTAAAAGCTCCAGGAGATGGTTCAGGGGATCAAAGTAAAAATGATGGAGGTTTTGAAACCTATAGCATATTTGGTGGAACACCTTTCATGAAAGGTTTTGAATCACCTTCTGCATGGAAATCATCTCCTTGGTTCAGGAATACTTTTCTCTGTAGCCCTAATACTGAAATTAAAATTGAGGATTTTGGATTTTTCAAGAGCCCAGAAGGTGAGCGAAGCTACGACGCTATCGGGTTGTTAAAACAAGTCGGTGAACAAACTGCTGCTACATACGAAAATGCACAGGAGCTTTTGAAAAATGATACTCCTAAAGCAGTACCTAAAGATGCTTCCGGAAACGATAAGTTGACTACAAATGCTTTGGTTGAGCGACGCGTGCTTGACTTTAGTGAATGTGGAACACCAGAAAAGGGTGATAGCAGTAAATCCTCAGATAGTCGGCTATGA

Protein sequence

>Msa0150290

MDGERIIAVPQGEGPIDSVEKVRAALHGRTTGPTRRSTKGQWTPEEDETLRKAVQRFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDDVMIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSAPHVGNPSQSMVATSSRSQCNEDENAFQRIEGDEVLECSHESANALHFPSTREITSVDLQPEEENRPIEECSFGMDHSPSQASCSEPYLVSIDDSIDDVTICIPEIAHHEACSSEFNDQYSHEPGNSINEDRHLNLHSLPNISSMDLGKESPQMQRDCTDPSGIRDLVNVPYQTSVGLAASTHMETTSMDSAKPDHMLISDDECCRVLFSEADNDRRFIQGDYNKGVGTVEFSGHPAFVCQSCRILIFETGGTSTLPLTCPRCSNSFKGMPSSQSNHPVHSAEPENQQFVSRAPDNFTYANDISSSHCIDAIDSAVMQDVNQNCCPTDENPKPNVHTEMEGNGALCYEPPRFPSLDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCMTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRCRDLLSPLSDKRIGKKLETDTSSSLSKAFSILEADILSPSSLQKYNSGASGFDDDKENCGQADKGKQVEETNKSAILEEKTSQRDALDSNSPGKVKQRHFDIYSKMKIDAAASEIVQQSSGVLSEHDRNDLSLYSSDQVGFRDRVIGSSVRTPRNLNNRSSETAPNQSIPSKLSSENPCRFSSPCVRAKEHENLTVSVNRVKAPGDGSGDQSKNDGGFETYSIFGGTPFMKGFESPSAWKSSPWFRNTFLCSPNTEIKIEDFGFFKSPEGERSYDAIGLLKQVGEQTAATYENAQELLKNDTPKAVPKDASGNDKLTTNALVERRVLDFSECGTPEKGDSSKSSDSRL*