AlfalfaGEDB | Msa0150450

M. sativa cultivar zhongmu-4 / Msa0150450

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150450	XP_024634006.1	74.069	698	124	7	10	654	25	718	0.0	1027

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150450	sp\|P93604\|LRK10_WHEAT	51.247	361	164	5	255	610	273	626	4.48e-118	369

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150450	A0A396JN79	74.069	698	124	7	10	654	25	718	0.0	1027

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0150450	MtrunA17_Chr1g0158191	74.069	698	124	7	10	654	25	718	1027
Msa0150450	MtrunA17_Chr1g0157791	72.310	697	134	8	8	654	27	714	1009
Msa0150450	MtrunA17_Chr1g0157991	69.373	702	164	8	2	654	21	720	949
Msa0150450	MtrunA17_Chr1g0158151	67.760	701	169	10	3	654	20	712	945
Msa0150450	MtrunA17_Chr1g0158041	68.507	670	160	8	8	628	25	692	915
Msa0150450	MtrunA17_Chr1g0157811	76.448	518	102	4	155	654	12	527	806
Msa0150450	MtrunA17_Chr1g0157951	81.340	418	76	1	237	654	93	508	708
Msa0150450	MtrunA17_Chr1g0158411	53.659	697	262	11	10	654	45	732	702
Msa0150450	MtrunA17_Chr6g0467711	55.147	680	244	15	13	639	42	713	691
Msa0150450	MtrunA17_Chr1g0158661	55.891	662	236	17	17	639	37	681	670

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0150450	AT5G38260.1	36.609	631	330	20	10	618	34	616	1.49e-116	362
Msa0150450	AT5G38250.1	35.514	642	350	19	7	636	29	618	2.64e-110	345
Msa0150450	AT5G38240.3	52.121	330	142	5	317	642	261	578	4.01e-109	341
Msa0150450	AT5G38280.1	49.708	342	158	6	317	652	321	654	5.64e-109	343
Msa0150450	AT5G38280.2	52.038	319	145	5	317	629	321	637	7.30e-109	343
Msa0150450	AT5G38240.2	52.121	330	142	5	317	642	307	624	1.47e-108	341
Msa0150450	AT5G38240.1	52.121	330	142	5	317	642	325	642	2.05e-108	341
Msa0150450	AT1G66910.2	34.537	637	338	17	14	612	38	633	4.07e-108	341
Msa0150450	AT4G18250.1	52.923	325	141	7	317	632	345	666	1.36e-107	340
Msa0150450	AT1G66910.1	34.219	640	339	17	14	612	38	636	2.76e-107	339

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Find 156 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCATTGGTCAATGTA+TGG	0.443248	1_4:-11865309	Msa0150450:CDS
AAAGACAAGTTGGGTGAAGG+AGG	0.552973	1_4:-11865198	Msa0150450:CDS
AAAGATGATCCAATTCATTG+CGG	0.617257	1_4:-11868005	Msa0150450:CDS
AAAGCATTGAATTATCTTCG+TGG	0.509375	1_4:+11867368	None:intergenic
AAAGTAGTGGAGATGCTCGA+AGG	0.639091	1_4:-11864412	Msa0150450:CDS
AAATTTCGCCACAAGATGAA+GGG	0.549150	1_4:+11868054	None:intergenic
AACATCTTGATTGCCACACA+AGG	0.553530	1_4:+11865138	None:intergenic
AACCCTTTATCCACATGAAC+CGG	0.432298	1_4:-11864356	Msa0150450:CDS
AACCGGTTCATGTGGATAAA+GGG	0.468020	1_4:+11864354	None:intergenic
AACTTATCAAGAGATCCATT+GGG	0.557762	1_4:+11864979	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACAATGCATAATATATGCA+AGG	-	chr1_4:11864218-11864237	Msa0150450:three_prime_UTR	30.0%
AAAGATGATCCAATTCATTG+CGG	-	chr1_4:11864698-11864717	Msa0150450:CDS	30.0%
TGTGAAATTCTTGTAGTTGA+TGG	+	chr1_4:11864801-11864820	None:intergenic	30.0%
TACTTGATTTCTTTGCAAAC+CGG	+	chr1_4:11865203-11865222	None:intergenic	30.0%
TTCATATGATGTCATTCATC+AGG	-	chr1_4:11865225-11865244	Msa0150450:CDS	30.0%
TTTGTTGCAGATACTATCAA+GGG	-	chr1_4:11865737-11865756	Msa0150450:intron	30.0%
AATATCGTACACCCAAAAAA+GGG	+	chr1_4:11865934-11865953	Msa0150460:intron	30.0%
AAATATCGTACACCCAAAAA+AGG	+	chr1_4:11865935-11865954	Msa0150460:intron	30.0%
ACTACTAAATTCCTCCATAA+GGG	-	chr1_4:11866166-11866185	Msa0150450:intron	30.0%
CTTCAATTAGCAAAGGAAAA+AGG	+	chr1_4:11866296-11866315	Msa0150460:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	11864028	11868697	11864028	ID=Msa0150450;Name=Msa0150450
chr1_4	mRNA	11864028	11868697	11864028	ID=Msa0150450-mRNA-1;Parent=Msa0150450;Name=Msa0150450-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0\|0\|0.16\|0.83\|0\|0\|6\|215\|654
chr1_4	exon	11864028	11865492	11864028	ID=Msa0150450-mRNA-1:exon:4915;Parent=Msa0150450-mRNA-1
chr1_4	exon	11867190	11867195	11867190	ID=Msa0150450-mRNA-1:exon:4914;Parent=Msa0150450-mRNA-1
chr1_4	exon	11867319	11867564	11867319	ID=Msa0150450-mRNA-1:exon:4913;Parent=Msa0150450-mRNA-1
chr1_4	exon	11867592	11867809	11867592	ID=Msa0150450-mRNA-1:exon:4912;Parent=Msa0150450-mRNA-1
chr1_4	exon	11867876	11868115	11867876	ID=Msa0150450-mRNA-1:exon:4911;Parent=Msa0150450-mRNA-1
chr1_4	exon	11868693	11868697	11868693	ID=Msa0150450-mRNA-1:exon:4910;Parent=Msa0150450-mRNA-1
chr1_4	CDS	11868693	11868697	11868693	ID=Msa0150450-mRNA-1:cds;Parent=Msa0150450-mRNA-1
chr1_4	CDS	11867876	11868115	11867876	ID=Msa0150450-mRNA-1:cds;Parent=Msa0150450-mRNA-1
chr1_4	CDS	11867592	11867809	11867592	ID=Msa0150450-mRNA-1:cds;Parent=Msa0150450-mRNA-1
chr1_4	CDS	11867319	11867564	11867319	ID=Msa0150450-mRNA-1:cds;Parent=Msa0150450-mRNA-1
chr1_4	CDS	11867190	11867195	11867190	ID=Msa0150450-mRNA-1:cds;Parent=Msa0150450-mRNA-1
chr1_4	CDS	11864243	11865492	11864243	ID=Msa0150450-mRNA-1:cds;Parent=Msa0150450-mRNA-1
chr1_4	three_prime_UTR	11864028	11864242	11864028	ID=Msa0150450-mRNA-1:three_prime_utr;Parent=Msa0150450-mRNA-1

Gene Sequence

>Msa0150450

ATGGTCAGCAGTAGACATCCCTCTGCGCAAGAACATTATTGCCCCCCTTCATCTTGTGGCGAAATTTCCAACATAACTTACCCATTTCGATTAAAAGATGATCCAATTCATTGCGGGGACAAAAGGTATGAACTAGCTTGTAAAAATAATGTAACAACTTTACATTTATACTCTGCAAAATATTATGTACAGTCCATCAACTACAAGAATTTCACAATCCGAGTCGTTGATCCTGGTGTTCAACAATTCAACAATTTTAACAATGACAATTGCAATGACCCATACTACGCCATGTTCCACGAAGTTTTTCTTCGAGGATCTTTCAACCCCTTCCATAAGCTTCTTTGGGAACATATAATATACTTGAACTGTACCCATCAAGTAACTAACAATCATAAATATGTGAATACCACTCCGTGCCTTAATTGGAACTCCAAAGGGTATTATATTTATGCTATTGCTGTTGGTTGTCATGTGAAATTGGTTACTCCAACTTCTTGGTCCGGTTTGCAAAGAAATCAAGTACTTTCATATGATGTCATTCATCAGGCGTTAGTATATGGATTTGAGATTTCATGGTTGCGTCTTAAGTGCCAAAATACTTGCGGTTATTTTTCAGTCTGCACCTTCAACACTTCCACGAAGATAATTCAATGCTTTTCTCCCTACTGCCGTACTATGATGGGATACTTCCGAAGGGGCAATTGTGGTAAGAGACTGGTTGAAATAATAAAAGGACCAAACTCAGACTATGATGATGTTACCCATTATAAACTAGGATTGACGACAGGGCGCTATATTCTACCATCATTCTTGGCTGCTAGACTTCTGTTTGGGATAACATTCTTCATTTCACTGTTGATATACAAATGGAGAAAAAGTCATTGGTCAATGTATGGATGTATTGAACTATATCTACAACAACAAAACAACCGCATGCCCATTGGATATTCATACAGAGAAATTAAGAAAATGACTAGAGGTTTCAAAGACAAGTTGGGTGAAGGAGGGTTTGGTACTGTGTTCAAGGGAAACCAACGTAGCGGGCCTTGTGTGGCAATCAAGATGTTGGGCAAGTCAAAAGGTAATGGGCAAGACTTTATTAATGAAGTTGCAACTATTGGAAGAATACATCATTTGAATGTGGTACAATTACTTGGATTTTGTGTTGAGGGATCGAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAGTTCATTTTCTCAAAAGAAGGGAGTAAAAAATTAAGATGCAGCCAAATTCATGATATTTCAATCGGAGTAGCTCGAGGAATTGCTTATCTCCACCATGGATGTGAAATCAAGATATTACATTTTGATATCAAGCCCCACAATATTCTGCTTGACGAGAACTTTATCCCAAAGATATCTGACTTTGGACTCGCAAAGCTATATCCGATTGAGAATAGCATTGTCACAATGACTGCAGCAAGAGGTACTATTGGATATATGGCTCCGGAGTTGTTCTACAAAAATATTGGGGGAGTATCCTATAAGGCCGATGTTTATAGTTTTGGGATGCTTTTGATGGAGATGGCAAGTGAAAGAAAAAACCTAAATACCCATGCGGAGCATTCAAGCCAGCTTTACTTTCCTTTCTGGATTTATGATCAATTTGGACAAGAGGGAGAAATTGAAATAGAAGATGTAACAGAGGATGAAAATAAAATACTAAAGAAGATGATCATAGTTGCACTTTGGTGTATTCAATTGAAACCAGCTGATCGCCCCTCAATGAACAAAGTAGTGGAGATGCTCGAAGGAGATGTTGAAAGCCTTGAAATGCCTCCAAAGCCAACCCTTTATCCACATGAACCGGTTGTAGACGATCAAAGAACCAACTTTGACCAAACAATGCCGAGTGATGATTACAGTAGTTCTTATGATTCTGTTCAAAGAGAACCTGATTCTCTGATAGAGAATATTGCTTGA

Protein sequence

>Msa0150450

MVSSRHPSAQEHYCPPSSCGEISNITYPFRLKDDPIHCGDKRYELACKNNVTTLHLYSAKYYVQSINYKNFTIRVVDPGVQQFNNFNNDNCNDPYYAMFHEVFLRGSFNPFHKLLWEHIIYLNCTHQVTNNHKYVNTTPCLNWNSKGYYIYAIAVGCHVKLVTPTSWSGLQRNQVLSYDVIHQALVYGFEISWLRLKCQNTCGYFSVCTFNTSTKIIQCFSPYCRTMMGYFRRGNCGKRLVEIIKGPNSDYDDVTHYKLGLTTGRYILPSFLAARLLFGITFFISLLIYKWRKSHWSMYGCIELYLQQQNNRMPIGYSYREIKKMTRGFKDKLGEGGFGTVFKGNQRSGPCVAIKMLGKSKGNGQDFINEVATIGRIHHLNVVQLLGFCVEGSKRALVYEFMPNGSLDKFIFSKEGSKKLRCSQIHDISIGVARGIAYLHHGCEIKILHFDIKPHNILLDENFIPKISDFGLAKLYPIENSIVTMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASERKNLNTHAEHSSQLYFPFWIYDQFGQEGEIEIEDVTEDENKILKKMIIVALWCIQLKPADRPSMNKVVEMLEGDVESLEMPPKPTLYPHEPVVDDQRTNFDQTMPSDDYSSSYDSVQREPDSLIENIA*