Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150730 | XP_004498435.1 | 54.386 | 171 | 51 | 2 | 1 | 171 | 1 | 144 | 3.30e-53 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150730 | sp|Q9SFD8|NFYB9_ARATH | 53.846 | 91 | 42 | 0 | 54 | 144 | 57 | 147 | 7.78e-34 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150730 | A0A1S2Y2P9 | 54.386 | 171 | 51 | 2 | 1 | 171 | 1 | 144 | 1.58e-53 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0150730 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150730 | MtrunA17_Chr1g0158951 | 83.696 | 92 | 15 | 0 | 86 | 177 | 19 | 110 | 1.21e-53 | 166 |
| Msa0150730 | MtrunA17_Chr1g0165041 | 63.333 | 90 | 33 | 0 | 55 | 144 | 5 | 94 | 1.40e-39 | 133 |
| Msa0150730 | MtrunA17_Chr4g0076381 | 46.715 | 137 | 68 | 3 | 10 | 144 | 13 | 146 | 1.19e-35 | 124 |
| Msa0150730 | MtrunA17_Chr7g0263601 | 41.667 | 132 | 64 | 2 | 49 | 178 | 17 | 137 | 1.37e-34 | 119 |
| Msa0150730 | MtrunA17_Chr1g0159271 | 58.065 | 93 | 39 | 0 | 70 | 162 | 1 | 93 | 4.13e-34 | 116 |
| Msa0150730 | MtrunA17_Chr3g0102351 | 44.286 | 140 | 69 | 4 | 34 | 169 | 2 | 136 | 8.01e-34 | 118 |
| Msa0150730 | MtrunA17_Chr8g0382931 | 53.846 | 91 | 42 | 0 | 54 | 144 | 26 | 116 | 1.36e-33 | 118 |
| Msa0150730 | MtrunA17_Chr2g0290491 | 44.444 | 117 | 58 | 1 | 37 | 153 | 5 | 114 | 1.38e-33 | 117 |
| Msa0150730 | MtrunA17_Chr1g0185911 | 52.747 | 91 | 43 | 0 | 54 | 144 | 27 | 117 | 3.59e-33 | 116 |
| Msa0150730 | MtrunA17_Chr5g0446491 | 46.789 | 109 | 54 | 1 | 55 | 163 | 22 | 126 | 8.26e-33 | 115 |
| Msa0150730 | MtrunA17_Chr4g0076321 | 42.308 | 130 | 70 | 1 | 37 | 166 | 5 | 129 | 3.35e-32 | 112 |
| Msa0150730 | MtrunA17_Chr8g0384451 | 45.000 | 100 | 55 | 0 | 55 | 154 | 39 | 138 | 9.06e-30 | 108 |
| Msa0150730 | MtrunA17_Chr2g0296321 | 48.889 | 90 | 46 | 0 | 55 | 144 | 65 | 154 | 7.56e-28 | 104 |
| Msa0150730 | MtrunA17_Chr4g0067091 | 46.465 | 99 | 53 | 0 | 55 | 153 | 21 | 119 | 7.92e-28 | 103 |
| Msa0150730 | MtrunA17_Chr1g0195851 | 46.316 | 95 | 51 | 0 | 55 | 149 | 35 | 129 | 1.69e-27 | 102 |
| Msa0150730 | MtrunA17_Chr1g0159291 | 48.750 | 80 | 41 | 0 | 57 | 136 | 3 | 82 | 3.53e-24 | 90.5 |
| Msa0150730 | MtrunA17_Chr1g0191981 | 40.230 | 87 | 52 | 0 | 58 | 144 | 6 | 92 | 3.31e-21 | 84.0 |
| Msa0150730 | MtrunA17_Chr5g0446601 | 41.176 | 85 | 50 | 0 | 61 | 145 | 29 | 113 | 4.78e-19 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150730 | AT5G47670.2 | 54.945 | 91 | 41 | 0 | 54 | 144 | 27 | 117 | 5.75e-35 | 122 |
| Msa0150730 | AT1G21970.1 | 53.846 | 91 | 42 | 0 | 54 | 144 | 57 | 147 | 7.91e-35 | 122 |
| Msa0150730 | AT5G47670.1 | 55.556 | 90 | 40 | 0 | 55 | 144 | 57 | 146 | 9.57e-35 | 122 |
| Msa0150730 | AT5G47670.3 | 55.556 | 90 | 40 | 0 | 55 | 144 | 57 | 146 | 9.57e-35 | 122 |
| Msa0150730 | AT4G14540.1 | 53.846 | 91 | 42 | 0 | 54 | 144 | 19 | 109 | 1.56e-34 | 119 |
| Msa0150730 | AT2G38880.3 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 1.61e-33 | 116 |
| Msa0150730 | AT2G38880.2 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 2.04e-33 | 116 |
| Msa0150730 | AT2G38880.1 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 2.04e-33 | 116 |
| Msa0150730 | AT2G38880.5 | 45.000 | 120 | 55 | 1 | 55 | 174 | 20 | 128 | 2.04e-33 | 116 |
| Msa0150730 | AT2G38880.7 | 45.000 | 120 | 53 | 1 | 55 | 174 | 20 | 126 | 3.01e-33 | 115 |
| Msa0150730 | AT2G38880.4 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 1.36e-32 | 113 |
| Msa0150730 | AT5G47640.1 | 51.648 | 91 | 44 | 0 | 55 | 145 | 26 | 116 | 2.35e-32 | 115 |
| Msa0150730 | AT2G38880.11 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 3.23e-32 | 114 |
| Msa0150730 | AT2G38880.8 | 51.648 | 91 | 44 | 0 | 54 | 144 | 19 | 109 | 3.23e-32 | 114 |
| Msa0150730 | AT2G37060.2 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.82e-32 | 113 |
| Msa0150730 | AT2G37060.3 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.82e-32 | 113 |
| Msa0150730 | AT2G37060.1 | 44.444 | 117 | 61 | 2 | 31 | 144 | 3 | 118 | 4.82e-32 | 113 |
| Msa0150730 | AT3G53340.5 | 51.111 | 90 | 44 | 0 | 55 | 144 | 28 | 117 | 5.95e-32 | 113 |
| Msa0150730 | AT3G53340.1 | 51.111 | 90 | 44 | 0 | 55 | 144 | 28 | 117 | 5.95e-32 | 113 |
| Msa0150730 | AT3G53340.4 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.13e-31 | 111 |
| Msa0150730 | AT2G38880.9 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.34e-31 | 112 |
| Msa0150730 | AT2G38880.10 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.34e-31 | 112 |
| Msa0150730 | AT2G38880.6 | 49.474 | 95 | 48 | 0 | 54 | 148 | 19 | 113 | 1.34e-31 | 112 |
| Msa0150730 | AT3G53340.3 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.76e-30 | 108 |
| Msa0150730 | AT3G53340.2 | 50.549 | 91 | 45 | 0 | 54 | 144 | 27 | 117 | 1.76e-30 | 108 |
| Msa0150730 | AT2G13570.1 | 49.451 | 91 | 46 | 0 | 55 | 145 | 35 | 125 | 7.33e-30 | 109 |
| Msa0150730 | AT2G47810.1 | 47.253 | 91 | 48 | 0 | 54 | 144 | 49 | 139 | 3.05e-27 | 100 |
| Msa0150730 | AT1G09030.1 | 41.573 | 89 | 52 | 0 | 56 | 144 | 3 | 91 | 2.59e-23 | 90.1 |
Find 36 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGCGAACGATTTAATA+TGG | 0.243997 | 1_4:-12357055 | Msa0150730:CDS |
| ATGAATTACCTACTTCAAAA+TGG | 0.257898 | 1_4:+12357342 | None:intergenic |
| TTGTCGAATCCAATTGTAAT+TGG | 0.273848 | 1_4:+12356939 | None:intergenic |
| TTAAAGTCTTAAAAGTAGTA+TGG | 0.360701 | 1_4:-12358027 | Msa0150730:exon |
| AGGTAAATGCTGCTTAGTTC+CGG | 0.363825 | 1_4:+12357265 | None:intergenic |
| AATGACATGCCAATTACAAT+TGG | 0.392076 | 1_4:-12356948 | Msa0150730:CDS |
| GTGTTGAACGACTAAGGTTA+AGG | 0.408775 | 1_4:+12357988 | None:intergenic |
| CCACATAGTTACGATACCTT+TGG | 0.434158 | 1_4:+12356979 | None:intergenic |
| TTGATTGTGTTGAACGACTA+AGG | 0.437171 | 1_4:+12357982 | None:intergenic |
| ATATGGGCAATGGATAGGTT+AGG | 0.445811 | 1_4:-12357038 | Msa0150730:CDS |
| TGTTGAACGACTAAGGTTAA+GGG | 0.465410 | 1_4:+12357989 | None:intergenic |
| CATAGTTACGATACCTTTGG+AGG | 0.481766 | 1_4:+12356982 | None:intergenic |
| CTTAAAAGTAGTATGGAGAA+TGG | 0.482031 | 1_4:-12358020 | Msa0150730:exon |
| TACAGCGAACGATTTAATAT+GGG | 0.483846 | 1_4:-12357054 | Msa0150730:CDS |
| ATTCTTGTCAATTGCACGAT+GGG | 0.485603 | 1_4:+12357215 | None:intergenic |
| ATTTAATATGGGCAATGGAT+AGG | 0.498662 | 1_4:-12357043 | Msa0150730:CDS |
| CGTTCAACACAATCAAGCTC+TGG | 0.512773 | 1_4:-12357975 | Msa0150730:intron |
| TGGATTCGACAAGGATGGAT+CGG | 0.517609 | 1_4:-12356928 | Msa0150730:CDS |
| AACGACTAAGGTTAAGGGAC+GGG | 0.520234 | 1_4:+12357994 | None:intergenic |
| AATTGACTCTTTAGCACCAT+CGG | 0.524561 | 1_4:+12357157 | None:intergenic |
| ACAATTGGATTCGACAAGGA+TGG | 0.533736 | 1_4:-12356933 | Msa0150730:CDS |
| GGATTCGACAAGGATGGATC+GGG | 0.534384 | 1_4:-12356927 | Msa0150730:CDS |
| GGTGCTAGTGGCTCGAACAA+TGG | 0.541308 | 1_4:-12356906 | Msa0150730:CDS |
| GAACGATTTAATATGGGCAA+TGG | 0.552208 | 1_4:-12357048 | Msa0150730:CDS |
| TTTACCTAAAACAAAGAATG+AGG | 0.564286 | 1_4:-12357249 | Msa0150730:CDS |
| AAGGATGGATCGGGTGCTAG+TGG | 0.571277 | 1_4:-12356918 | Msa0150730:CDS |
| AACAACAATAACTTTCACAC+CGG | 0.626294 | 1_4:-12357284 | Msa0150730:CDS |
| TTTGGAGGTAAAAGACTAGA+GGG | 0.630419 | 1_4:+12356997 | None:intergenic |
| CATGAGCATCATCACGAGTG+AGG | 0.643678 | 1_4:-12357114 | Msa0150730:CDS |
| CCAAAGGTATCGTAACTATG+TGG | 0.644573 | 1_4:-12356979 | Msa0150730:CDS |
| GAACGACTAAGGTTAAGGGA+CGG | 0.644933 | 1_4:+12357993 | None:intergenic |
| GATTCTTGTCAATTGCACGA+TGG | 0.645811 | 1_4:+12357214 | None:intergenic |
| CTTTGGAGGTAAAAGACTAG+AGG | 0.649236 | 1_4:+12356996 | None:intergenic |
| AATTACAATTGGATTCGACA+AGG | 0.668467 | 1_4:-12356937 | Msa0150730:CDS |
| TCACGAGTGAGGCAAGCGAG+CGG | 0.677839 | 1_4:-12357103 | Msa0150730:CDS |
| TGCAATTGACAAGAATCATG+CGG | 0.689401 | 1_4:-12357208 | Msa0150730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGAATTATTATTTTTAAA+AGG | - | chr1_4:12357041-12357060 | Msa0150730:CDS | 10.0% |
| !!! | CTTATATTTTTTTTTTTTGA+GGG | - | chr1_4:12357253-12357272 | Msa0150730:CDS | 10.0% |
| !!! | CAAGAATTATTATTTTTAAA+AGG | - | chr1_4:12357041-12357060 | Msa0150730:CDS | 10.0% |
| !!! | CTTATATTTTTTTTTTTTGA+GGG | - | chr1_4:12357253-12357272 | Msa0150730:CDS | 10.0% |
| !!! | GCTTATATTTTTTTTTTTTG+AGG | - | chr1_4:12357252-12357271 | Msa0150730:CDS | 15.0% |
| !! | AAACAAAGATCTAAAAAATA+AGG | - | chr1_4:12357416-12357435 | Msa0150730:intron | 15.0% |
| !!! | GCTTATATTTTTTTTTTTTG+AGG | - | chr1_4:12357252-12357271 | Msa0150730:CDS | 15.0% |
| !! | AAACAAAGATCTAAAAAATA+AGG | - | chr1_4:12357416-12357435 | Msa0150730:intron | 15.0% |
| !! | TTAAAGTCTTAAAAGTAGTA+TGG | - | chr1_4:12356884-12356903 | Msa0150730:CDS | 20.0% |
| !!! | GATTATTTTTGAGAAATAAG+AGG | + | chr1_4:12357022-12357041 | None:intergenic | 20.0% |
| !! | TTAAAGTCTTAAAAGTAGTA+TGG | - | chr1_4:12356884-12356903 | Msa0150730:CDS | 20.0% |
| !!! | GATTATTTTTGAGAAATAAG+AGG | + | chr1_4:12357022-12357041 | None:intergenic | 20.0% |
| !!! | TGTACAATTTTGGTTGTTTA+GGG | + | chr1_4:12356968-12356987 | None:intergenic | 25.0% |
| ! | AATCGTATCTTCGTTATTAT+GGG | - | chr1_4:12356989-12357008 | Msa0150730:CDS | 25.0% |
| !! | TCAAACAAAATTGAGGTATT+TGG | - | chr1_4:12357183-12357202 | Msa0150730:CDS | 25.0% |
| ! | ATGAATTACCTACTTCAAAA+TGG | + | chr1_4:12357572-12357591 | None:intergenic | 25.0% |
| ! | TTTACCTAAAACAAAGAATG+AGG | - | chr1_4:12357662-12357681 | Msa0150730:intron | 25.0% |
| !!! | TGTACAATTTTGGTTGTTTA+GGG | + | chr1_4:12356968-12356987 | None:intergenic | 25.0% |
| ! | AATCGTATCTTCGTTATTAT+GGG | - | chr1_4:12356989-12357008 | Msa0150730:CDS | 25.0% |
| !! | TCAAACAAAATTGAGGTATT+TGG | - | chr1_4:12357183-12357202 | Msa0150730:CDS | 25.0% |
| ! | ATGAATTACCTACTTCAAAA+TGG | + | chr1_4:12357572-12357591 | None:intergenic | 25.0% |
| ! | TTTACCTAAAACAAAGAATG+AGG | - | chr1_4:12357662-12357681 | Msa0150730:intron | 25.0% |
| CTTAAAAGTAGTATGGAGAA+TGG | - | chr1_4:12356891-12356910 | Msa0150730:CDS | 30.0% | |
| !!! | GTGTACAATTTTGGTTGTTT+AGG | + | chr1_4:12356969-12356988 | None:intergenic | 30.0% |
| ! | GATACGATTGTGTACAATTT+TGG | + | chr1_4:12356978-12356997 | None:intergenic | 30.0% |
| CAATCGTATCTTCGTTATTA+TGG | - | chr1_4:12356988-12357007 | Msa0150730:CDS | 30.0% | |
| !! | TGTTACTTTGAAGAAGATTG+AGG | - | chr1_4:12357100-12357119 | Msa0150730:CDS | 30.0% |
| ! | ACAGACAGAGTATTCAATTA+TGG | + | chr1_4:12357140-12357159 | None:intergenic | 30.0% |
| AAGTGAGTCAAACAAAATTG+AGG | - | chr1_4:12357176-12357195 | Msa0150730:CDS | 30.0% | |
| !! | TCAAAGAAGGTTGATGTATT+TGG | + | chr1_4:12357222-12357241 | None:intergenic | 30.0% |
| AGCAAAAAGTAAGTCAAAGA+AGG | + | chr1_4:12357235-12357254 | None:intergenic | 30.0% | |
| TAATGCCTTAAGAATCCAAT+GGG | + | chr1_4:12357376-12357395 | None:intergenic | 30.0% | |
| AACAACAATAACTTTCACAC+CGG | - | chr1_4:12357627-12357646 | Msa0150730:intron | 30.0% | |
| TTACAGCGAACGATTTAATA+TGG | - | chr1_4:12357856-12357875 | Msa0150730:intron | 30.0% | |
| TACAGCGAACGATTTAATAT+GGG | - | chr1_4:12357857-12357876 | Msa0150730:intron | 30.0% | |
| ATTTAATATGGGCAATGGAT+AGG | - | chr1_4:12357868-12357887 | Msa0150730:intron | 30.0% | |
| !!! | TTAGGTTTTGAAGACTATGT+TGG | - | chr1_4:12357891-12357910 | Msa0150730:intron | 30.0% |
| AATGACATGCCAATTACAAT+TGG | - | chr1_4:12357963-12357982 | Msa0150730:intron | 30.0% | |
| TTGTCGAATCCAATTGTAAT+TGG | + | chr1_4:12357975-12357994 | None:intergenic | 30.0% | |
| AATTACAATTGGATTCGACA+AGG | - | chr1_4:12357974-12357993 | Msa0150730:intron | 30.0% | |
| CTTAAAAGTAGTATGGAGAA+TGG | - | chr1_4:12356891-12356910 | Msa0150730:CDS | 30.0% | |
| !!! | GTGTACAATTTTGGTTGTTT+AGG | + | chr1_4:12356969-12356988 | None:intergenic | 30.0% |
| ! | GATACGATTGTGTACAATTT+TGG | + | chr1_4:12356978-12356997 | None:intergenic | 30.0% |
| CAATCGTATCTTCGTTATTA+TGG | - | chr1_4:12356988-12357007 | Msa0150730:CDS | 30.0% | |
| !! | TGTTACTTTGAAGAAGATTG+AGG | - | chr1_4:12357100-12357119 | Msa0150730:CDS | 30.0% |
| ! | ACAGACAGAGTATTCAATTA+TGG | + | chr1_4:12357140-12357159 | None:intergenic | 30.0% |
| AAGTGAGTCAAACAAAATTG+AGG | - | chr1_4:12357176-12357195 | Msa0150730:CDS | 30.0% | |
| !! | TCAAAGAAGGTTGATGTATT+TGG | + | chr1_4:12357222-12357241 | None:intergenic | 30.0% |
| AGCAAAAAGTAAGTCAAAGA+AGG | + | chr1_4:12357235-12357254 | None:intergenic | 30.0% | |
| TAATGCCTTAAGAATCCAAT+GGG | + | chr1_4:12357376-12357395 | None:intergenic | 30.0% | |
| AACAACAATAACTTTCACAC+CGG | - | chr1_4:12357627-12357646 | Msa0150730:intron | 30.0% | |
| TTACAGCGAACGATTTAATA+TGG | - | chr1_4:12357856-12357875 | Msa0150730:intron | 30.0% | |
| TACAGCGAACGATTTAATAT+GGG | - | chr1_4:12357857-12357876 | Msa0150730:intron | 30.0% | |
| ATTTAATATGGGCAATGGAT+AGG | - | chr1_4:12357868-12357887 | Msa0150730:intron | 30.0% | |
| !!! | TTAGGTTTTGAAGACTATGT+TGG | - | chr1_4:12357891-12357910 | Msa0150730:intron | 30.0% |
| AATGACATGCCAATTACAAT+TGG | - | chr1_4:12357963-12357982 | Msa0150730:intron | 30.0% | |
| TTGTCGAATCCAATTGTAAT+TGG | + | chr1_4:12357975-12357994 | None:intergenic | 30.0% | |
| AATTACAATTGGATTCGACA+AGG | - | chr1_4:12357974-12357993 | Msa0150730:intron | 30.0% | |
| TGTTGAACGACTAAGGTTAA+GGG | + | chr1_4:12356925-12356944 | None:intergenic | 35.0% | |
| TTGATTGTGTTGAACGACTA+AGG | + | chr1_4:12356932-12356951 | None:intergenic | 35.0% | |
| !! | ATCCAATGGGAAGTATTCAA+GGG | + | chr1_4:12357363-12357382 | None:intergenic | 35.0% |
| !! | AATCCAATGGGAAGTATTCA+AGG | + | chr1_4:12357364-12357383 | None:intergenic | 35.0% |
| TACTTCCCATTGGATTCTTA+AGG | - | chr1_4:12357368-12357387 | Msa0150730:intron | 35.0% | |
| GTAATGCCTTAAGAATCCAA+TGG | + | chr1_4:12357377-12357396 | None:intergenic | 35.0% | |
| ! | TAAGGCATTACTTTCCTCTT+TGG | - | chr1_4:12357386-12357405 | Msa0150730:intron | 35.0% |
| TTTGTTTCACATGTCCAAAG+AGG | + | chr1_4:12357403-12357422 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAACATCTTGTAC+AGG | - | chr1_4:12357453-12357472 | Msa0150730:intron | 35.0% |
| CTTGTTGAACATCTTGTACA+GGG | - | chr1_4:12357454-12357473 | Msa0150730:intron | 35.0% | |
| !! | TTACTTAGCTCTGATCTGTT+TGG | - | chr1_4:12357540-12357559 | Msa0150730:intron | 35.0% |
| !!! | GGATTAGTCCATTTTGAAGT+AGG | - | chr1_4:12357561-12357580 | Msa0150730:intron | 35.0% |
| !!! | TGCTCCTCATTCTTTGTTTT+AGG | + | chr1_4:12357669-12357688 | None:intergenic | 35.0% |
| ATTCTTGTCAATTGCACGAT+GGG | + | chr1_4:12357699-12357718 | None:intergenic | 35.0% | |
| TGCAATTGACAAGAATCATG+CGG | - | chr1_4:12357703-12357722 | Msa0150730:intron | 35.0% | |
| ! | AATTGACTCTTTAGCACCAT+CGG | + | chr1_4:12357757-12357776 | None:intergenic | 35.0% |
| GAACGATTTAATATGGGCAA+TGG | - | chr1_4:12357863-12357882 | Msa0150730:intron | 35.0% | |
| TTTGGAGGTAAAAGACTAGA+GGG | + | chr1_4:12357917-12357936 | None:intergenic | 35.0% | |
| TGTTGAACGACTAAGGTTAA+GGG | + | chr1_4:12356925-12356944 | None:intergenic | 35.0% | |
| TTGATTGTGTTGAACGACTA+AGG | + | chr1_4:12356932-12356951 | None:intergenic | 35.0% | |
| !! | ATCCAATGGGAAGTATTCAA+GGG | + | chr1_4:12357363-12357382 | None:intergenic | 35.0% |
| !! | AATCCAATGGGAAGTATTCA+AGG | + | chr1_4:12357364-12357383 | None:intergenic | 35.0% |
| TACTTCCCATTGGATTCTTA+AGG | - | chr1_4:12357368-12357387 | Msa0150730:intron | 35.0% | |
| GTAATGCCTTAAGAATCCAA+TGG | + | chr1_4:12357377-12357396 | None:intergenic | 35.0% | |
| ! | TAAGGCATTACTTTCCTCTT+TGG | - | chr1_4:12357386-12357405 | Msa0150730:intron | 35.0% |
| TTTGTTTCACATGTCCAAAG+AGG | + | chr1_4:12357403-12357422 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAACATCTTGTAC+AGG | - | chr1_4:12357453-12357472 | Msa0150730:intron | 35.0% |
| CTTGTTGAACATCTTGTACA+GGG | - | chr1_4:12357454-12357473 | Msa0150730:intron | 35.0% | |
| !! | TTACTTAGCTCTGATCTGTT+TGG | - | chr1_4:12357540-12357559 | Msa0150730:intron | 35.0% |
| !!! | GGATTAGTCCATTTTGAAGT+AGG | - | chr1_4:12357561-12357580 | Msa0150730:intron | 35.0% |
| !!! | TGCTCCTCATTCTTTGTTTT+AGG | + | chr1_4:12357669-12357688 | None:intergenic | 35.0% |
| ATTCTTGTCAATTGCACGAT+GGG | + | chr1_4:12357699-12357718 | None:intergenic | 35.0% | |
| TGCAATTGACAAGAATCATG+CGG | - | chr1_4:12357703-12357722 | Msa0150730:intron | 35.0% | |
| ! | AATTGACTCTTTAGCACCAT+CGG | + | chr1_4:12357757-12357776 | None:intergenic | 35.0% |
| GAACGATTTAATATGGGCAA+TGG | - | chr1_4:12357863-12357882 | Msa0150730:intron | 35.0% | |
| TTTGGAGGTAAAAGACTAGA+GGG | + | chr1_4:12357917-12357936 | None:intergenic | 35.0% | |
| GTGTTGAACGACTAAGGTTA+AGG | + | chr1_4:12356926-12356945 | None:intergenic | 40.0% | |
| TTCCCTTGAATACTTCCCAT+TGG | - | chr1_4:12357358-12357377 | Msa0150730:intron | 40.0% | |
| ! | AGGTAAATGCTGCTTAGTTC+CGG | + | chr1_4:12357649-12357668 | None:intergenic | 40.0% |
| GATTCTTGTCAATTGCACGA+TGG | + | chr1_4:12357700-12357719 | None:intergenic | 40.0% | |
| ! | TCGGAGATTTTTACATGCGA+GGG | + | chr1_4:12357738-12357757 | None:intergenic | 40.0% |
| ! | ATCGGAGATTTTTACATGCG+AGG | + | chr1_4:12357739-12357758 | None:intergenic | 40.0% |
| TCGCATGTAAAAATCTCCGA+TGG | - | chr1_4:12357738-12357757 | Msa0150730:intron | 40.0% | |
| ATATGGGCAATGGATAGGTT+AGG | - | chr1_4:12357873-12357892 | Msa0150730:intron | 40.0% | |
| ! | CTTTGGAGGTAAAAGACTAG+AGG | + | chr1_4:12357918-12357937 | None:intergenic | 40.0% |
| !! | CTCTAGTCTTTTACCTCCAA+AGG | - | chr1_4:12357916-12357935 | Msa0150730:intron | 40.0% |
| CATAGTTACGATACCTTTGG+AGG | + | chr1_4:12357932-12357951 | None:intergenic | 40.0% | |
| CCACATAGTTACGATACCTT+TGG | + | chr1_4:12357935-12357954 | None:intergenic | 40.0% | |
| !! | CCAAAGGTATCGTAACTATG+TGG | - | chr1_4:12357932-12357951 | Msa0150730:intron | 40.0% |
| ACAATTGGATTCGACAAGGA+TGG | - | chr1_4:12357978-12357997 | Msa0150730:CDS | 40.0% | |
| GTGTTGAACGACTAAGGTTA+AGG | + | chr1_4:12356926-12356945 | None:intergenic | 40.0% | |
| TTCCCTTGAATACTTCCCAT+TGG | - | chr1_4:12357358-12357377 | Msa0150730:intron | 40.0% | |
| ! | AGGTAAATGCTGCTTAGTTC+CGG | + | chr1_4:12357649-12357668 | None:intergenic | 40.0% |
| GATTCTTGTCAATTGCACGA+TGG | + | chr1_4:12357700-12357719 | None:intergenic | 40.0% | |
| ! | TCGGAGATTTTTACATGCGA+GGG | + | chr1_4:12357738-12357757 | None:intergenic | 40.0% |
| ! | ATCGGAGATTTTTACATGCG+AGG | + | chr1_4:12357739-12357758 | None:intergenic | 40.0% |
| TCGCATGTAAAAATCTCCGA+TGG | - | chr1_4:12357738-12357757 | Msa0150730:intron | 40.0% | |
| ATATGGGCAATGGATAGGTT+AGG | - | chr1_4:12357873-12357892 | Msa0150730:intron | 40.0% | |
| ! | CTTTGGAGGTAAAAGACTAG+AGG | + | chr1_4:12357918-12357937 | None:intergenic | 40.0% |
| !! | CTCTAGTCTTTTACCTCCAA+AGG | - | chr1_4:12357916-12357935 | Msa0150730:intron | 40.0% |
| CATAGTTACGATACCTTTGG+AGG | + | chr1_4:12357932-12357951 | None:intergenic | 40.0% | |
| CCACATAGTTACGATACCTT+TGG | + | chr1_4:12357935-12357954 | None:intergenic | 40.0% | |
| !! | CCAAAGGTATCGTAACTATG+TGG | - | chr1_4:12357932-12357951 | Msa0150730:intron | 40.0% |
| ACAATTGGATTCGACAAGGA+TGG | - | chr1_4:12357978-12357997 | Msa0150730:CDS | 40.0% | |
| AACGACTAAGGTTAAGGGAC+GGG | + | chr1_4:12356920-12356939 | None:intergenic | 45.0% | |
| GAACGACTAAGGTTAAGGGA+CGG | + | chr1_4:12356921-12356940 | None:intergenic | 45.0% | |
| CGTTCAACACAATCAAGCTC+TGG | - | chr1_4:12356936-12356955 | Msa0150730:CDS | 45.0% | |
| TGGATTCGACAAGGATGGAT+CGG | - | chr1_4:12357983-12358002 | Msa0150730:CDS | 45.0% | |
| AACGACTAAGGTTAAGGGAC+GGG | + | chr1_4:12356920-12356939 | None:intergenic | 45.0% | |
| GAACGACTAAGGTTAAGGGA+CGG | + | chr1_4:12356921-12356940 | None:intergenic | 45.0% | |
| CGTTCAACACAATCAAGCTC+TGG | - | chr1_4:12356936-12356955 | Msa0150730:CDS | 45.0% | |
| TGGATTCGACAAGGATGGAT+CGG | - | chr1_4:12357983-12358002 | Msa0150730:CDS | 45.0% | |
| CATGAGCATCATCACGAGTG+AGG | - | chr1_4:12357797-12357816 | Msa0150730:intron | 50.0% | |
| GGATTCGACAAGGATGGATC+GGG | - | chr1_4:12357984-12358003 | Msa0150730:CDS | 50.0% | |
| CATGAGCATCATCACGAGTG+AGG | - | chr1_4:12357797-12357816 | Msa0150730:intron | 50.0% | |
| GGATTCGACAAGGATGGATC+GGG | - | chr1_4:12357984-12358003 | Msa0150730:CDS | 50.0% | |
| AAGGATGGATCGGGTGCTAG+TGG | - | chr1_4:12357993-12358012 | Msa0150730:CDS | 55.0% | |
| GGTGCTAGTGGCTCGAACAA+TGG | - | chr1_4:12358005-12358024 | Msa0150730:CDS | 55.0% | |
| AAGGATGGATCGGGTGCTAG+TGG | - | chr1_4:12357993-12358012 | Msa0150730:CDS | 55.0% | |
| GGTGCTAGTGGCTCGAACAA+TGG | - | chr1_4:12358005-12358024 | Msa0150730:CDS | 55.0% | |
| TCACGAGTGAGGCAAGCGAG+CGG | - | chr1_4:12357808-12357827 | Msa0150730:intron | 60.0% | |
| TCACGAGTGAGGCAAGCGAG+CGG | - | chr1_4:12357808-12357827 | Msa0150730:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 12356884 | 12358049 | 12356884 | ID=Msa0150730;Name=Msa0150730 |
| chr1_4 | mRNA | 12356884 | 12358049 | 12356884 | ID=Msa0150730-mRNA-1;Parent=Msa0150730;Name=Msa0150730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=19|1|0.5|1|1|1|2|0|178 |
| chr1_4 | exon | 12356884 | 12357365 | 12356884 | ID=Msa0150730-mRNA-1:exon:5006;Parent=Msa0150730-mRNA-1 |
| chr1_4 | exon | 12357976 | 12358049 | 12357976 | ID=Msa0150730-mRNA-1:exon:5005;Parent=Msa0150730-mRNA-1 |
| chr1_4 | five_prime_UTR | 12358031 | 12358049 | 12358031 | ID=Msa0150730-mRNA-1:five_prime_utr;Parent=Msa0150730-mRNA-1 |
| chr1_4 | CDS | 12357976 | 12358030 | 12357976 | ID=Msa0150730-mRNA-1:cds;Parent=Msa0150730-mRNA-1 |
| chr1_4 | CDS | 12356884 | 12357365 | 12356884 | ID=Msa0150730-mRNA-1:cds;Parent=Msa0150730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
