Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150950 | sp|Q9SLG0|NFYB1_ARATH | 42.574 | 101 | 53 | 1 | 49 | 144 | 26 | 126 | 3.34e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150950 | I3TAX7 | 91.111 | 90 | 8 | 0 | 43 | 132 | 1 | 90 | 1.85e-54 | 176 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0150950 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150950 | MtrunA17_Chr1g0159291 | 91.111 | 90 | 8 | 0 | 43 | 132 | 1 | 90 | 3.56e-58 | 176 |
| Msa0150950 | MtrunA17_Chr1g0185911 | 41.414 | 99 | 50 | 1 | 49 | 139 | 34 | 132 | 6.58e-23 | 89.0 |
| Msa0150950 | MtrunA17_Chr3g0102351 | 38.393 | 112 | 59 | 1 | 49 | 150 | 32 | 143 | 4.59e-22 | 87.4 |
| Msa0150950 | MtrunA17_Chr4g0076381 | 40.476 | 84 | 50 | 0 | 49 | 132 | 63 | 146 | 1.18e-21 | 87.4 |
| Msa0150950 | MtrunA17_Chr5g0446491 | 40.000 | 105 | 59 | 1 | 49 | 153 | 28 | 128 | 2.71e-21 | 85.1 |
| Msa0150950 | MtrunA17_Chr7g0263601 | 38.835 | 103 | 60 | 1 | 49 | 148 | 31 | 133 | 2.75e-21 | 84.7 |
| Msa0150950 | MtrunA17_Chr8g0382931 | 39.806 | 103 | 61 | 1 | 49 | 150 | 33 | 135 | 6.45e-21 | 84.7 |
| Msa0150950 | MtrunA17_Chr1g0195851 | 42.857 | 84 | 48 | 0 | 49 | 132 | 41 | 124 | 6.60e-21 | 84.3 |
| Msa0150950 | MtrunA17_Chr2g0290491 | 42.857 | 84 | 48 | 0 | 49 | 132 | 22 | 105 | 1.25e-20 | 82.8 |
| Msa0150950 | MtrunA17_Chr1g0165041 | 42.857 | 84 | 48 | 0 | 49 | 132 | 11 | 94 | 1.26e-20 | 83.6 |
| Msa0150950 | MtrunA17_Chr4g0076321 | 42.045 | 88 | 51 | 0 | 45 | 132 | 20 | 107 | 1.84e-20 | 81.6 |
| Msa0150950 | MtrunA17_Chr8g0384451 | 42.353 | 85 | 49 | 0 | 49 | 133 | 45 | 129 | 1.29e-19 | 81.3 |
| Msa0150950 | MtrunA17_Chr2g0296321 | 36.283 | 113 | 62 | 2 | 49 | 151 | 71 | 183 | 2.89e-19 | 81.3 |
| Msa0150950 | MtrunA17_Chr1g0191981 | 36.905 | 84 | 53 | 0 | 49 | 132 | 9 | 92 | 1.61e-18 | 76.3 |
| Msa0150950 | MtrunA17_Chr4g0067091 | 39.286 | 84 | 51 | 0 | 49 | 132 | 27 | 110 | 4.83e-18 | 77.4 |
| Msa0150950 | MtrunA17_Chr1g0159271 | 46.753 | 77 | 41 | 0 | 58 | 134 | 1 | 77 | 6.78e-18 | 74.3 |
| Msa0150950 | MtrunA17_Chr1g0158951 | 39.286 | 84 | 37 | 1 | 79 | 148 | 24 | 107 | 6.90e-16 | 69.3 |
| Msa0150950 | MtrunA17_Chr5g0446601 | 32.941 | 85 | 57 | 0 | 49 | 133 | 29 | 113 | 9.14e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150950 | AT2G38880.7 | 43.434 | 99 | 53 | 1 | 49 | 144 | 26 | 124 | 1.55e-23 | 90.1 |
| Msa0150950 | AT2G38880.3 | 42.574 | 101 | 53 | 1 | 49 | 144 | 26 | 126 | 3.03e-23 | 89.4 |
| Msa0150950 | AT2G38880.2 | 42.574 | 101 | 53 | 1 | 49 | 144 | 26 | 126 | 3.39e-23 | 89.4 |
| Msa0150950 | AT2G38880.1 | 42.574 | 101 | 53 | 1 | 49 | 144 | 26 | 126 | 3.39e-23 | 89.4 |
| Msa0150950 | AT2G38880.5 | 42.574 | 101 | 53 | 1 | 49 | 144 | 26 | 126 | 3.39e-23 | 89.4 |
| Msa0150950 | AT2G37060.2 | 42.202 | 109 | 59 | 2 | 49 | 154 | 35 | 142 | 1.71e-22 | 88.2 |
| Msa0150950 | AT2G37060.3 | 42.202 | 109 | 59 | 2 | 49 | 154 | 35 | 142 | 1.71e-22 | 88.2 |
| Msa0150950 | AT2G37060.1 | 42.202 | 109 | 59 | 2 | 49 | 154 | 35 | 142 | 1.71e-22 | 88.2 |
| Msa0150950 | AT3G53340.5 | 43.137 | 102 | 55 | 1 | 49 | 147 | 34 | 135 | 1.72e-22 | 88.2 |
| Msa0150950 | AT3G53340.1 | 43.137 | 102 | 55 | 1 | 49 | 147 | 34 | 135 | 1.72e-22 | 88.2 |
| Msa0150950 | AT4G14540.1 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 1.54e-21 | 85.5 |
| Msa0150950 | AT2G38880.4 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 2.72e-21 | 83.6 |
| Msa0150950 | AT2G38880.11 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 5.50e-21 | 84.0 |
| Msa0150950 | AT2G38880.8 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 5.50e-21 | 84.0 |
| Msa0150950 | AT5G47640.1 | 45.238 | 84 | 46 | 0 | 49 | 132 | 32 | 115 | 7.85e-21 | 84.3 |
| Msa0150950 | AT2G38880.9 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 2.65e-20 | 82.0 |
| Msa0150950 | AT2G38880.10 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 2.65e-20 | 82.0 |
| Msa0150950 | AT2G38880.6 | 44.048 | 84 | 47 | 0 | 49 | 132 | 26 | 109 | 2.65e-20 | 82.0 |
| Msa0150950 | AT2G47810.1 | 34.437 | 151 | 89 | 4 | 6 | 147 | 11 | 160 | 5.01e-20 | 81.6 |
| Msa0150950 | AT3G53340.4 | 45.238 | 84 | 46 | 0 | 49 | 132 | 34 | 117 | 7.49e-20 | 80.1 |
| Msa0150950 | AT5G47670.2 | 36.842 | 95 | 60 | 0 | 49 | 143 | 34 | 128 | 1.96e-19 | 81.3 |
| Msa0150950 | AT5G47670.1 | 38.095 | 84 | 52 | 0 | 49 | 132 | 63 | 146 | 2.95e-19 | 81.3 |
| Msa0150950 | AT5G47670.3 | 38.095 | 84 | 52 | 0 | 49 | 132 | 63 | 146 | 2.95e-19 | 81.3 |
| Msa0150950 | AT1G21970.1 | 37.273 | 110 | 63 | 2 | 25 | 132 | 42 | 147 | 5.11e-19 | 80.9 |
| Msa0150950 | AT2G13570.1 | 42.697 | 89 | 50 | 1 | 49 | 137 | 41 | 128 | 9.57e-19 | 79.3 |
| Msa0150950 | AT3G53340.3 | 45.238 | 84 | 46 | 0 | 49 | 132 | 34 | 117 | 1.48e-18 | 77.4 |
| Msa0150950 | AT3G53340.2 | 45.238 | 84 | 46 | 0 | 49 | 132 | 34 | 117 | 1.48e-18 | 77.4 |
| Msa0150950 | AT1G09030.1 | 34.091 | 88 | 58 | 0 | 45 | 132 | 4 | 91 | 3.04e-17 | 73.9 |
Find 40 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTTCTACTTTGGCTTTC+TGG | 0.106584 | 1_4:+12686224 | None:intergenic |
| ATTGTGTGTGTCTAAATTTA+TGG | 0.291429 | 1_4:-12686269 | Msa0150950:CDS |
| TTTCTGCTGATGATTTACTA+TGG | 0.320933 | 1_4:-12686192 | Msa0150950:CDS |
| CGCACTTCCTCGCCCATTGT+TGG | 0.335463 | 1_4:+12686379 | None:intergenic |
| GAGGAATTTGTTAGGTCTCT+TGG | 0.362755 | 1_4:-12686148 | Msa0150950:CDS |
| ATTTACTATGGACGATGAAT+AGG | 0.363355 | 1_4:-12686180 | Msa0150950:CDS |
| TGGGCTTTGAGGAATTTGTT+AGG | 0.401864 | 1_4:-12686156 | Msa0150950:CDS |
| AGGAATTTGTTAGGTCTCTT+GGG | 0.404606 | 1_4:-12686147 | Msa0150950:CDS |
| GGAGTTGAATGTTGGTTCTC+AGG | 0.413844 | 1_4:+12686400 | None:intergenic |
| AGTTACTCCATCATATTCAT+TGG | 0.421996 | 1_4:+12686063 | None:intergenic |
| GATGAATAGGTTGGGCTTTG+AGG | 0.427694 | 1_4:-12686167 | Msa0150950:CDS |
| AATCATTTGATGTTCTACTT+TGG | 0.442609 | 1_4:+12686216 | None:intergenic |
| CTATGGACGATGAATAGGTT+GGG | 0.452990 | 1_4:-12686175 | Msa0150950:CDS |
| AACAATGCCAATGAATATGA+TGG | 0.455568 | 1_4:-12686070 | Msa0150950:CDS |
| GACTCTTGTCACATGATTGA+TGG | 0.464195 | 1_4:+12686351 | None:intergenic |
| TTCCTTGCGTCGAATTGCTA+TGG | 0.472086 | 1_4:+12686941 | None:intergenic |
| CGCAACAACACGGATGGGTC+AGG | 0.477125 | 1_4:-12686106 | Msa0150950:CDS |
| CCAACATTCAACTCCAACAA+TGG | 0.484164 | 1_4:-12686392 | Msa0150950:CDS |
| CAACATTCAACTCCAACAAT+GGG | 0.502283 | 1_4:-12686391 | Msa0150950:CDS |
| ACGGATGGGTCAGGTGGTAG+TGG | 0.505279 | 1_4:-12686097 | Msa0150950:CDS |
| CCATTGTTGGAGTTGAATGT+TGG | 0.510977 | 1_4:+12686392 | None:intergenic |
| AACTATCGCAACAACACGGA+TGG | 0.517358 | 1_4:-12686112 | Msa0150950:CDS |
| CATTAACTCCTTAGCATCAC+CGG | 0.525471 | 1_4:+12686294 | None:intergenic |
| ACTATGGACGATGAATAGGT+TGG | 0.532041 | 1_4:-12686176 | Msa0150950:CDS |
| TCACCGGTGATTATTGTGTC+CGG | 0.543765 | 1_4:+12686310 | None:intergenic |
| AATTCGACGCAAGGAAACTC+TGG | 0.549434 | 1_4:-12686934 | Msa0150950:intron |
| AATAATCACCGGTGATGCTA+AGG | 0.556556 | 1_4:-12686302 | Msa0150950:CDS |
| AACCATAGCAATTCGACGCA+AGG | 0.566800 | 1_4:-12686943 | Msa0150950:CDS |
| CGAATTGCTATGGTTAGCAG+AGG | 0.582765 | 1_4:+12686951 | None:intergenic |
| CATGCAGAGTGTTCTTCCAC+CGG | 0.588890 | 1_4:-12686329 | Msa0150950:CDS |
| AACAACAACAACATTGACGT+TGG | 0.590713 | 1_4:-12686424 | Msa0150950:CDS |
| ACTCTTGTCACATGATTGAT+GGG | 0.597608 | 1_4:+12686352 | None:intergenic |
| TTCAACTCCAACAATGGGCG+AGG | 0.597648 | 1_4:-12686386 | Msa0150950:CDS |
| GAATTGCTATGGTTAGCAGA+GGG | 0.611088 | 1_4:+12686952 | None:intergenic |
| CCGGTGATTATTGTGTCCGG+TGG | 0.615417 | 1_4:+12686313 | None:intergenic |
| CCACCGGACACAATAATCAC+CGG | 0.624454 | 1_4:-12686313 | Msa0150950:CDS |
| ACTATCGCAACAACACGGAT+GGG | 0.627647 | 1_4:-12686111 | Msa0150950:CDS |
| AATTGCTATGGTTAGCAGAG+GGG | 0.653798 | 1_4:+12686953 | None:intergenic |
| AACAACACGGATGGGTCAGG+TGG | 0.663654 | 1_4:-12686103 | Msa0150950:CDS |
| TATGGACATAGTCACAAGTG+AGG | 0.668100 | 1_4:-12686251 | Msa0150950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTCAAAATTAAAAGATT+TGG | + | chr1_4:12686509-12686528 | None:intergenic | 15.0% |
| !! | ATCTTCAAAATTAAAAGATT+TGG | + | chr1_4:12686509-12686528 | None:intergenic | 15.0% |
| !! | TTAACAATAGATTGTACTAA+AGG | - | chr1_4:12686268-12686287 | Msa0150950:CDS | 20.0% |
| !! | TTAACAATAGATTGTACTAA+AGG | - | chr1_4:12686268-12686287 | Msa0150950:CDS | 20.0% |
| !!! | ATGTTTTTGATAGAGATAAA+AGG | + | chr1_4:12686555-12686574 | None:intergenic | 20.0% |
| !! | TTAACAATAGATTGTACTAA+AGG | - | chr1_4:12686268-12686287 | Msa0150950:CDS | 20.0% |
| !! | TTAACAATAGATTGTACTAA+AGG | - | chr1_4:12686268-12686287 | Msa0150950:CDS | 20.0% |
| !!! | ATGTTTTTGATAGAGATAAA+AGG | + | chr1_4:12686555-12686574 | None:intergenic | 20.0% |
| !! | CTCAATCTTTTACAAAAGTA+GGG | + | chr1_4:12686154-12686173 | None:intergenic | 25.0% |
| !! | ACTCAATCTTTTACAAAAGT+AGG | + | chr1_4:12686155-12686174 | None:intergenic | 25.0% |
| ! | ATTGTGTGTGTCTAAATTTA+TGG | - | chr1_4:12686755-12686774 | Msa0150950:intron | 25.0% |
| ! | AATCATTTGATGTTCTACTT+TGG | + | chr1_4:12686811-12686830 | None:intergenic | 25.0% |
| !! | CTCAATCTTTTACAAAAGTA+GGG | + | chr1_4:12686154-12686173 | None:intergenic | 25.0% |
| !! | ACTCAATCTTTTACAAAAGT+AGG | + | chr1_4:12686155-12686174 | None:intergenic | 25.0% |
| ! | ATTGTGTGTGTCTAAATTTA+TGG | - | chr1_4:12686755-12686774 | Msa0150950:intron | 25.0% |
| ! | AATCATTTGATGTTCTACTT+TGG | + | chr1_4:12686811-12686830 | None:intergenic | 25.0% |
| TTGTAAAAGATTGAGTGTGT+CGG | - | chr1_4:12686159-12686178 | Msa0150950:CDS | 30.0% | |
| TTTCTGCTGATGATTTACTA+TGG | - | chr1_4:12686832-12686851 | Msa0150950:intron | 30.0% | |
| ATTTACTATGGACGATGAAT+AGG | - | chr1_4:12686844-12686863 | Msa0150950:intron | 30.0% | |
| AACAATGCCAATGAATATGA+TGG | - | chr1_4:12686954-12686973 | Msa0150950:CDS | 30.0% | |
| AGTTACTCCATCATATTCAT+TGG | + | chr1_4:12686964-12686983 | None:intergenic | 30.0% | |
| TTGTAAAAGATTGAGTGTGT+CGG | - | chr1_4:12686159-12686178 | Msa0150950:CDS | 30.0% | |
| TTTCTGCTGATGATTTACTA+TGG | - | chr1_4:12686832-12686851 | Msa0150950:intron | 30.0% | |
| ATTTACTATGGACGATGAAT+AGG | - | chr1_4:12686844-12686863 | Msa0150950:intron | 30.0% | |
| AACAATGCCAATGAATATGA+TGG | - | chr1_4:12686954-12686973 | Msa0150950:CDS | 30.0% | |
| AGTTACTCCATCATATTCAT+TGG | + | chr1_4:12686964-12686983 | None:intergenic | 30.0% | |
| ! | AATGTTGTTGTTGTTGTTGG+TGG | + | chr1_4:12686595-12686614 | None:intergenic | 35.0% |
| ! | GTCAATGTTGTTGTTGTTGT+TGG | + | chr1_4:12686598-12686617 | None:intergenic | 35.0% |
| AACAACAACAACATTGACGT+TGG | - | chr1_4:12686600-12686619 | Msa0150950:intron | 35.0% | |
| CAACATTCAACTCCAACAAT+GGG | - | chr1_4:12686633-12686652 | Msa0150950:intron | 35.0% | |
| ACTCTTGTCACATGATTGAT+GGG | + | chr1_4:12686675-12686694 | None:intergenic | 35.0% | |
| !! | AGGAATTTGTTAGGTCTCTT+GGG | - | chr1_4:12686877-12686896 | Msa0150950:intron | 35.0% |
| ! | TGTTGTTGCGATAGTTTTTG+AGG | + | chr1_4:12686908-12686927 | None:intergenic | 35.0% |
| CAAAAACTATCGCAACAACA+CGG | - | chr1_4:12686908-12686927 | Msa0150950:intron | 35.0% | |
| ! | AATGTTGTTGTTGTTGTTGG+TGG | + | chr1_4:12686595-12686614 | None:intergenic | 35.0% |
| ! | GTCAATGTTGTTGTTGTTGT+TGG | + | chr1_4:12686598-12686617 | None:intergenic | 35.0% |
| AACAACAACAACATTGACGT+TGG | - | chr1_4:12686600-12686619 | Msa0150950:intron | 35.0% | |
| CAACATTCAACTCCAACAAT+GGG | - | chr1_4:12686633-12686652 | Msa0150950:intron | 35.0% | |
| ACTCTTGTCACATGATTGAT+GGG | + | chr1_4:12686675-12686694 | None:intergenic | 35.0% | |
| !! | AGGAATTTGTTAGGTCTCTT+GGG | - | chr1_4:12686877-12686896 | Msa0150950:intron | 35.0% |
| ! | TGTTGTTGCGATAGTTTTTG+AGG | + | chr1_4:12686908-12686927 | None:intergenic | 35.0% |
| CAAAAACTATCGCAACAACA+CGG | - | chr1_4:12686908-12686927 | Msa0150950:intron | 35.0% | |
| AATTGCTATGGTTAGCAGAG+GGG | + | chr1_4:12686074-12686093 | None:intergenic | 40.0% | |
| GAATTGCTATGGTTAGCAGA+GGG | + | chr1_4:12686075-12686094 | None:intergenic | 40.0% | |
| CCATTGTTGGAGTTGAATGT+TGG | + | chr1_4:12686635-12686654 | None:intergenic | 40.0% | |
| CCAACATTCAACTCCAACAA+TGG | - | chr1_4:12686632-12686651 | Msa0150950:intron | 40.0% | |
| GACTCTTGTCACATGATTGA+TGG | + | chr1_4:12686676-12686695 | None:intergenic | 40.0% | |
| AATAATCACCGGTGATGCTA+AGG | - | chr1_4:12686722-12686741 | Msa0150950:intron | 40.0% | |
| CATTAACTCCTTAGCATCAC+CGG | + | chr1_4:12686733-12686752 | None:intergenic | 40.0% | |
| TATGGACATAGTCACAAGTG+AGG | - | chr1_4:12686773-12686792 | Msa0150950:intron | 40.0% | |
| !! | GATGTTCTACTTTGGCTTTC+TGG | + | chr1_4:12686803-12686822 | None:intergenic | 40.0% |
| ACTATGGACGATGAATAGGT+TGG | - | chr1_4:12686848-12686867 | Msa0150950:intron | 40.0% | |
| CTATGGACGATGAATAGGTT+GGG | - | chr1_4:12686849-12686868 | Msa0150950:intron | 40.0% | |
| !! | TGGGCTTTGAGGAATTTGTT+AGG | - | chr1_4:12686868-12686887 | Msa0150950:intron | 40.0% |
| !! | GAGGAATTTGTTAGGTCTCT+TGG | - | chr1_4:12686876-12686895 | Msa0150950:intron | 40.0% |
| AATTGCTATGGTTAGCAGAG+GGG | + | chr1_4:12686074-12686093 | None:intergenic | 40.0% | |
| GAATTGCTATGGTTAGCAGA+GGG | + | chr1_4:12686075-12686094 | None:intergenic | 40.0% | |
| CCATTGTTGGAGTTGAATGT+TGG | + | chr1_4:12686635-12686654 | None:intergenic | 40.0% | |
| CCAACATTCAACTCCAACAA+TGG | - | chr1_4:12686632-12686651 | Msa0150950:intron | 40.0% | |
| GACTCTTGTCACATGATTGA+TGG | + | chr1_4:12686676-12686695 | None:intergenic | 40.0% | |
| AATAATCACCGGTGATGCTA+AGG | - | chr1_4:12686722-12686741 | Msa0150950:intron | 40.0% | |
| CATTAACTCCTTAGCATCAC+CGG | + | chr1_4:12686733-12686752 | None:intergenic | 40.0% | |
| TATGGACATAGTCACAAGTG+AGG | - | chr1_4:12686773-12686792 | Msa0150950:intron | 40.0% | |
| !! | GATGTTCTACTTTGGCTTTC+TGG | + | chr1_4:12686803-12686822 | None:intergenic | 40.0% |
| ACTATGGACGATGAATAGGT+TGG | - | chr1_4:12686848-12686867 | Msa0150950:intron | 40.0% | |
| CTATGGACGATGAATAGGTT+GGG | - | chr1_4:12686849-12686868 | Msa0150950:intron | 40.0% | |
| !! | TGGGCTTTGAGGAATTTGTT+AGG | - | chr1_4:12686868-12686887 | Msa0150950:intron | 40.0% |
| !! | GAGGAATTTGTTAGGTCTCT+TGG | - | chr1_4:12686876-12686895 | Msa0150950:intron | 40.0% |
| CGAATTGCTATGGTTAGCAG+AGG | + | chr1_4:12686076-12686095 | None:intergenic | 45.0% | |
| AACCATAGCAATTCGACGCA+AGG | - | chr1_4:12686081-12686100 | Msa0150950:CDS | 45.0% | |
| TTCCTTGCGTCGAATTGCTA+TGG | + | chr1_4:12686086-12686105 | None:intergenic | 45.0% | |
| AATTCGACGCAAGGAAACTC+TGG | - | chr1_4:12686090-12686109 | Msa0150950:CDS | 45.0% | |
| !! | GGAGTTGAATGTTGGTTCTC+AGG | + | chr1_4:12686627-12686646 | None:intergenic | 45.0% |
| TCACCGGTGATTATTGTGTC+CGG | + | chr1_4:12686717-12686736 | None:intergenic | 45.0% | |
| ! | GATGAATAGGTTGGGCTTTG+AGG | - | chr1_4:12686857-12686876 | Msa0150950:intron | 45.0% |
| AACTATCGCAACAACACGGA+TGG | - | chr1_4:12686912-12686931 | Msa0150950:intron | 45.0% | |
| ACTATCGCAACAACACGGAT+GGG | - | chr1_4:12686913-12686932 | Msa0150950:intron | 45.0% | |
| CGAATTGCTATGGTTAGCAG+AGG | + | chr1_4:12686076-12686095 | None:intergenic | 45.0% | |
| AACCATAGCAATTCGACGCA+AGG | - | chr1_4:12686081-12686100 | Msa0150950:CDS | 45.0% | |
| TTCCTTGCGTCGAATTGCTA+TGG | + | chr1_4:12686086-12686105 | None:intergenic | 45.0% | |
| AATTCGACGCAAGGAAACTC+TGG | - | chr1_4:12686090-12686109 | Msa0150950:CDS | 45.0% | |
| !! | GGAGTTGAATGTTGGTTCTC+AGG | + | chr1_4:12686627-12686646 | None:intergenic | 45.0% |
| TCACCGGTGATTATTGTGTC+CGG | + | chr1_4:12686717-12686736 | None:intergenic | 45.0% | |
| ! | GATGAATAGGTTGGGCTTTG+AGG | - | chr1_4:12686857-12686876 | Msa0150950:intron | 45.0% |
| AACTATCGCAACAACACGGA+TGG | - | chr1_4:12686912-12686931 | Msa0150950:intron | 45.0% | |
| ACTATCGCAACAACACGGAT+GGG | - | chr1_4:12686913-12686932 | Msa0150950:intron | 45.0% | |
| !!! | AAATTAATTATTTTTTTTTC+AGG | + | chr1_4:12686477-12686496 | None:intergenic | 5.0% |
| !!! | AAATTAATTATTTTTTTTTC+AGG | + | chr1_4:12686477-12686496 | None:intergenic | 5.0% |
| TTCAACTCCAACAATGGGCG+AGG | - | chr1_4:12686638-12686657 | Msa0150950:intron | 50.0% | |
| ! | CATGCAGAGTGTTCTTCCAC+CGG | - | chr1_4:12686695-12686714 | Msa0150950:intron | 50.0% |
| CCACCGGACACAATAATCAC+CGG | - | chr1_4:12686711-12686730 | Msa0150950:intron | 50.0% | |
| TTCAACTCCAACAATGGGCG+AGG | - | chr1_4:12686638-12686657 | Msa0150950:intron | 50.0% | |
| ! | CATGCAGAGTGTTCTTCCAC+CGG | - | chr1_4:12686695-12686714 | Msa0150950:intron | 50.0% |
| CCACCGGACACAATAATCAC+CGG | - | chr1_4:12686711-12686730 | Msa0150950:intron | 50.0% | |
| CCGGTGATTATTGTGTCCGG+TGG | + | chr1_4:12686714-12686733 | None:intergenic | 55.0% | |
| AACAACACGGATGGGTCAGG+TGG | - | chr1_4:12686921-12686940 | Msa0150950:intron | 55.0% | |
| CCGGTGATTATTGTGTCCGG+TGG | + | chr1_4:12686714-12686733 | None:intergenic | 55.0% | |
| AACAACACGGATGGGTCAGG+TGG | - | chr1_4:12686921-12686940 | Msa0150950:intron | 55.0% | |
| CGCACTTCCTCGCCCATTGT+TGG | + | chr1_4:12686648-12686667 | None:intergenic | 60.0% | |
| CGCAACAACACGGATGGGTC+AGG | - | chr1_4:12686918-12686937 | Msa0150950:intron | 60.0% | |
| ACGGATGGGTCAGGTGGTAG+TGG | - | chr1_4:12686927-12686946 | Msa0150950:intron | 60.0% | |
| CGCACTTCCTCGCCCATTGT+TGG | + | chr1_4:12686648-12686667 | None:intergenic | 60.0% | |
| CGCAACAACACGGATGGGTC+AGG | - | chr1_4:12686918-12686937 | Msa0150950:intron | 60.0% | |
| ACGGATGGGTCAGGTGGTAG+TGG | - | chr1_4:12686927-12686946 | Msa0150950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 12686057 | 12686989 | 12686057 | ID=Msa0150950;Name=Msa0150950 |
| chr1_4 | mRNA | 12686057 | 12686989 | 12686057 | ID=Msa0150950-mRNA-1;Parent=Msa0150950;Name=Msa0150950-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.5|1|1|2|0|154 |
| chr1_4 | exon | 12686935 | 12686989 | 12686935 | ID=Msa0150950-mRNA-1:exon:5120;Parent=Msa0150950-mRNA-1 |
| chr1_4 | exon | 12686057 | 12686466 | 12686057 | ID=Msa0150950-mRNA-1:exon:5119;Parent=Msa0150950-mRNA-1 |
| chr1_4 | CDS | 12686935 | 12686989 | 12686935 | ID=Msa0150950-mRNA-1:cds;Parent=Msa0150950-mRNA-1 |
| chr1_4 | CDS | 12686057 | 12686466 | 12686057 | ID=Msa0150950-mRNA-1:cds;Parent=Msa0150950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
