Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150960 | XP_013466407.1 | 91.279 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 6.52e-99 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150960 | sp|O23310|NFYB3_ARATH | 55.208 | 96 | 43 | 0 | 50 | 145 | 19 | 114 | 4.37e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150960 | A0A072VGA7 | 91.279 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 3.12e-99 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0150960 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150960 | MtrunA17_Chr1g0159271 | 95.327 | 107 | 5 | 0 | 66 | 172 | 1 | 107 | 6.11e-62 | 186 |
| Msa0150960 | MtrunA17_Chr1g0185911 | 50.000 | 120 | 50 | 2 | 57 | 172 | 34 | 147 | 1.90e-34 | 119 |
| Msa0150960 | MtrunA17_Chr1g0165041 | 57.303 | 89 | 38 | 0 | 57 | 145 | 11 | 99 | 2.35e-34 | 119 |
| Msa0150960 | MtrunA17_Chr7g0263601 | 47.788 | 113 | 48 | 1 | 57 | 169 | 31 | 132 | 1.19e-33 | 117 |
| Msa0150960 | MtrunA17_Chr8g0382931 | 58.427 | 89 | 37 | 0 | 57 | 145 | 33 | 121 | 2.73e-33 | 117 |
| Msa0150960 | MtrunA17_Chr2g0290491 | 54.839 | 93 | 42 | 0 | 57 | 149 | 22 | 114 | 1.32e-32 | 114 |
| Msa0150960 | MtrunA17_Chr4g0076381 | 39.716 | 141 | 84 | 1 | 13 | 153 | 20 | 159 | 4.03e-32 | 115 |
| Msa0150960 | MtrunA17_Chr5g0446491 | 48.718 | 117 | 55 | 2 | 29 | 145 | 5 | 116 | 4.30e-32 | 113 |
| Msa0150960 | MtrunA17_Chr3g0102351 | 46.154 | 117 | 62 | 1 | 29 | 145 | 5 | 120 | 1.19e-31 | 112 |
| Msa0150960 | MtrunA17_Chr4g0076321 | 54.945 | 91 | 41 | 0 | 53 | 143 | 20 | 110 | 1.77e-30 | 107 |
| Msa0150960 | MtrunA17_Chr1g0195851 | 44.954 | 109 | 60 | 0 | 37 | 145 | 21 | 129 | 3.32e-30 | 108 |
| Msa0150960 | MtrunA17_Chr8g0384451 | 53.933 | 89 | 41 | 0 | 57 | 145 | 45 | 133 | 9.25e-30 | 108 |
| Msa0150960 | MtrunA17_Chr4g0067091 | 45.000 | 120 | 52 | 2 | 24 | 143 | 8 | 113 | 3.03e-28 | 104 |
| Msa0150960 | MtrunA17_Chr1g0158951 | 56.098 | 82 | 36 | 0 | 87 | 168 | 24 | 105 | 1.61e-27 | 99.8 |
| Msa0150960 | MtrunA17_Chr2g0296321 | 47.826 | 92 | 48 | 0 | 53 | 144 | 67 | 158 | 1.69e-26 | 100 |
| Msa0150960 | MtrunA17_Chr1g0159291 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 3.88e-22 | 85.1 |
| Msa0150960 | MtrunA17_Chr1g0191981 | 42.529 | 87 | 50 | 0 | 57 | 143 | 9 | 95 | 4.69e-22 | 86.3 |
| Msa0150960 | MtrunA17_Chr5g0446601 | 33.721 | 86 | 57 | 0 | 56 | 141 | 28 | 113 | 4.38e-14 | 67.0 |
| Msa0150960 | MtrunA17_Chr2g0307551 | 25.962 | 104 | 77 | 0 | 42 | 145 | 1 | 104 | 1.72e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150960 | AT4G14540.1 | 55.208 | 96 | 43 | 0 | 50 | 145 | 19 | 114 | 4.44e-34 | 118 |
| Msa0150960 | AT2G38880.3 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.31e-33 | 114 |
| Msa0150960 | AT2G38880.2 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 6.29e-33 | 114 |
| Msa0150960 | AT2G38880.1 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 6.29e-33 | 114 |
| Msa0150960 | AT2G38880.5 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 6.29e-33 | 114 |
| Msa0150960 | AT3G53340.5 | 47.788 | 113 | 48 | 1 | 57 | 169 | 34 | 135 | 8.48e-33 | 115 |
| Msa0150960 | AT3G53340.1 | 47.788 | 113 | 48 | 1 | 57 | 169 | 34 | 135 | 8.48e-33 | 115 |
| Msa0150960 | AT5G47670.2 | 53.061 | 98 | 45 | 1 | 57 | 154 | 34 | 130 | 8.52e-33 | 116 |
| Msa0150960 | AT2G37060.2 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 9.60e-33 | 115 |
| Msa0150960 | AT2G37060.3 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 9.60e-33 | 115 |
| Msa0150960 | AT2G37060.1 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 9.60e-33 | 115 |
| Msa0150960 | AT2G38880.7 | 50.000 | 112 | 52 | 2 | 57 | 168 | 26 | 133 | 1.78e-32 | 113 |
| Msa0150960 | AT5G47640.1 | 54.839 | 93 | 42 | 0 | 57 | 149 | 32 | 124 | 2.08e-32 | 114 |
| Msa0150960 | AT5G47670.1 | 53.061 | 98 | 45 | 1 | 57 | 154 | 63 | 159 | 2.25e-32 | 115 |
| Msa0150960 | AT5G47670.3 | 53.061 | 98 | 45 | 1 | 57 | 154 | 63 | 159 | 2.25e-32 | 115 |
| Msa0150960 | AT1G21970.1 | 42.208 | 154 | 74 | 5 | 1 | 143 | 1 | 150 | 3.07e-31 | 113 |
| Msa0150960 | AT2G38880.4 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 9.59e-31 | 108 |
| Msa0150960 | AT3G53340.4 | 54.762 | 84 | 38 | 0 | 57 | 140 | 34 | 117 | 9.89e-31 | 108 |
| Msa0150960 | AT2G13570.1 | 55.056 | 89 | 40 | 0 | 57 | 145 | 41 | 129 | 1.58e-30 | 110 |
| Msa0150960 | AT3G53340.3 | 52.809 | 89 | 42 | 0 | 57 | 145 | 34 | 122 | 1.73e-30 | 108 |
| Msa0150960 | AT3G53340.2 | 52.809 | 89 | 42 | 0 | 57 | 145 | 34 | 122 | 1.73e-30 | 108 |
| Msa0150960 | AT2G38880.11 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.39e-30 | 108 |
| Msa0150960 | AT2G38880.8 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.39e-30 | 108 |
| Msa0150960 | AT2G38880.9 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.98e-30 | 107 |
| Msa0150960 | AT2G38880.10 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.98e-30 | 107 |
| Msa0150960 | AT2G38880.6 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.98e-30 | 107 |
| Msa0150960 | AT2G47810.1 | 48.864 | 88 | 45 | 0 | 53 | 140 | 52 | 139 | 1.37e-27 | 101 |
| Msa0150960 | AT1G09030.1 | 44.211 | 95 | 53 | 0 | 51 | 145 | 2 | 96 | 6.86e-26 | 96.7 |
| Msa0150960 | AT5G08190.1 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 1.22e-11 | 60.1 |
| Msa0150960 | AT5G08190.2 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 1.26e-11 | 60.1 |
| Msa0150960 | AT5G23090.5 | 23.967 | 121 | 90 | 1 | 46 | 164 | 5 | 125 | 5.54e-11 | 58.2 |
| Msa0150960 | AT5G23090.2 | 23.967 | 121 | 90 | 1 | 46 | 164 | 5 | 125 | 5.54e-11 | 58.2 |
| Msa0150960 | AT5G23090.1 | 23.967 | 121 | 90 | 1 | 46 | 164 | 5 | 125 | 5.54e-11 | 58.2 |
Find 50 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAATTGCATATCAATAT+TGG | 0.281359 | 1_4:+12695753 | None:intergenic |
| GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1_4:+12696086 | None:intergenic |
| CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1_4:+12695855 | None:intergenic |
| TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1_4:-12695931 | Msa0150960:CDS |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1_4:-12695906 | Msa0150960:CDS |
| ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1_4:-12695914 | Msa0150960:CDS |
| AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1_4:-12695797 | Msa0150960:CDS |
| ATTGTGTGTGTCTGATTTCA+TGG | 0.432510 | 1_4:-12696008 | Msa0150960:CDS |
| AGAGGCATGTCAACTGCTCC+TGG | 0.433255 | 1_4:-12695824 | Msa0150960:CDS |
| CACAGTTCCTCATTTGTTGT+TGG | 0.457296 | 1_4:+12696118 | None:intergenic |
| ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1_4:+12696024 | None:intergenic |
| ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1_4:-12695794 | Msa0150960:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1_4:-12695947 | Msa0150960:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1_4:-12695913 | Msa0150960:CDS |
| CTCATTTAACAACATCCGTT+CGG | 0.488776 | 1_4:-12697478 | Msa0150960:CDS |
| GATTTAGTCCGTTTGCAAGC+AGG | 0.497822 | 1_4:-12696214 | Msa0150960:intron |
| TTCGAAAACAATGAATCTCC+AGG | 0.504116 | 1_4:-12696184 | Msa0150960:CDS |
| CGAACGGATGTTGTTAAATG+AGG | 0.506308 | 1_4:+12697479 | None:intergenic |
| AGTTCCTCATTTGTTGTTGG+AGG | 0.507953 | 1_4:+12696121 | None:intergenic |
| ATGGACTCCCTGCTTGCAAA+CGG | 0.509157 | 1_4:+12696206 | None:intergenic |
| TGGATTCAACATGGATGGGT+CGG | 0.509828 | 1_4:-12695804 | Msa0150960:CDS |
| GCTCCTGGATTCAACATGGA+TGG | 0.514275 | 1_4:-12695809 | Msa0150960:CDS |
| GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1_4:-12695803 | Msa0150960:CDS |
| ATTTAGTCCGTTTGCAAGCA+GGG | 0.519142 | 1_4:-12696213 | Msa0150960:intron |
| GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1_4:+12696090 | None:intergenic |
| TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1_4:-12695896 | Msa0150960:CDS |
| TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1_4:-12695924 | Msa0150960:CDS |
| CGTTCGGCACAATCAAGCTC+TGG | 0.526925 | 1_4:-12697462 | Msa0150960:intron |
| GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1_4:-12695782 | Msa0150960:CDS |
| GACCCATCCATGTTGAATCC+AGG | 0.543700 | 1_4:+12695806 | None:intergenic |
| TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1_4:-12695930 | Msa0150960:CDS |
| GGTGGCTCGAGCAGTGGTAA+TGG | 0.549299 | 1_4:-12695776 | Msa0150960:CDS |
| CTCCTGGATTCAACATGGAT+GGG | 0.558501 | 1_4:-12695808 | Msa0150960:CDS |
| AACCATGAGGCTCAATTCAG+AGG | 0.571608 | 1_4:-12695842 | Msa0150960:CDS |
| TCCTAAAGCAGCATGGAGCA+TGG | 0.576127 | 1_4:-12697507 | None:intergenic |
| GAACGGATGTTGTTAAATGA+GGG | 0.585718 | 1_4:+12697480 | None:intergenic |
| TGCCTCTGAATTGAGCCTCA+TGG | 0.586531 | 1_4:+12695840 | None:intergenic |
| TTTACCTCCAACAACAAATG+AGG | 0.591369 | 1_4:-12696125 | Msa0150960:CDS |
| ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1_4:+12696091 | None:intergenic |
| ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1_4:-12695919 | Msa0150960:CDS |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1_4:+12695907 | None:intergenic |
| AACTGCTCCTGGATTCAACA+TGG | 0.609527 | 1_4:-12695813 | Msa0150960:CDS |
| TTGTGTGTGTCTGATTTCAT+GGG | 0.610768 | 1_4:-12696007 | Msa0150960:CDS |
| GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1_4:-12695923 | Msa0150960:CDS |
| CAGAGCTTGATTGTGCCGAA+CGG | 0.616322 | 1_4:+12697463 | None:intergenic |
| GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1_4:+12695976 | None:intergenic |
| TCGAAAACAATGAATCTCCA+GGG | 0.645964 | 1_4:-12696183 | Msa0150960:CDS |
| GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1_4:-12696084 | Msa0150960:CDS |
| CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1_4:-12695855 | Msa0150960:CDS |
| CATGGGAATCATCACCACTG+AGG | 0.758004 | 1_4:-12695990 | Msa0150960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAATAAAAGAAATTAA+GGG | + | chr1_4:12696110-12696129 | None:intergenic | 10.0% |
| !!! | TTTAATGAAATTTTGATTTA+AGG | - | chr1_4:12696256-12696275 | Msa0150960:intron | 10.0% |
| !!! | TTAATGAAATTTTGATTTAA+GGG | - | chr1_4:12696257-12696276 | Msa0150960:intron | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | - | chr1_4:12696523-12696542 | Msa0150960:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | - | chr1_4:12696524-12696543 | Msa0150960:intron | 10.0% |
| !! | AATCTAATAAAAGAAATTAA+GGG | + | chr1_4:12696110-12696129 | None:intergenic | 10.0% |
| !!! | TTTAATGAAATTTTGATTTA+AGG | - | chr1_4:12696256-12696275 | Msa0150960:intron | 10.0% |
| !!! | TTAATGAAATTTTGATTTAA+GGG | - | chr1_4:12696257-12696276 | Msa0150960:intron | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | - | chr1_4:12696523-12696542 | Msa0150960:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | - | chr1_4:12696524-12696543 | Msa0150960:intron | 10.0% |
| !! | AAATTAAAATATGTGTTAAG+AGG | + | chr1_4:12695978-12695997 | None:intergenic | 15.0% |
| !!! | ATCAAAATCAATCTTTTATA+AGG | + | chr1_4:12696015-12696034 | None:intergenic | 15.0% |
| !! | ATCTAATAAAAGAAATTAAG+GGG | + | chr1_4:12696109-12696128 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAAGAAATTA+AGG | + | chr1_4:12696111-12696130 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTTGATTTAAG+GGG | - | chr1_4:12696258-12696277 | Msa0150960:intron | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | - | chr1_4:12696360-12696379 | Msa0150960:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | - | chr1_4:12696361-12696380 | Msa0150960:intron | 15.0% |
| !!! | TTTTTAATGTGAATTGAATT+CGG | + | chr1_4:12696404-12696423 | None:intergenic | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | + | chr1_4:12696837-12696856 | None:intergenic | 15.0% |
| !! | AAATTAAAATATGTGTTAAG+AGG | + | chr1_4:12695978-12695997 | None:intergenic | 15.0% |
| !!! | ATCAAAATCAATCTTTTATA+AGG | + | chr1_4:12696015-12696034 | None:intergenic | 15.0% |
| !! | ATCTAATAAAAGAAATTAAG+GGG | + | chr1_4:12696109-12696128 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAAGAAATTA+AGG | + | chr1_4:12696111-12696130 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTTGATTTAAG+GGG | - | chr1_4:12696258-12696277 | Msa0150960:intron | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | - | chr1_4:12696360-12696379 | Msa0150960:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | - | chr1_4:12696361-12696380 | Msa0150960:intron | 15.0% |
| !!! | TTTTTAATGTGAATTGAATT+CGG | + | chr1_4:12696404-12696423 | None:intergenic | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | + | chr1_4:12696837-12696856 | None:intergenic | 15.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | + | chr1_4:12695888-12695907 | None:intergenic | 20.0% |
| !! | TCTAATAAAAGAAATTAAGG+GGG | + | chr1_4:12696108-12696127 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATTAGATTCTCA+AGG | - | chr1_4:12696114-12696133 | Msa0150960:CDS | 20.0% |
| !!! | TTAAAAAAGATTTGAGATCT+TGG | - | chr1_4:12696417-12696436 | Msa0150960:intron | 20.0% |
| !!! | TAATTTTATTCAAAGCAGAT+CGG | - | chr1_4:12696443-12696462 | Msa0150960:intron | 20.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | + | chr1_4:12695888-12695907 | None:intergenic | 20.0% |
| !! | TCTAATAAAAGAAATTAAGG+GGG | + | chr1_4:12696108-12696127 | None:intergenic | 20.0% |
| !!! | TTTCTTTTATTAGATTCTCA+AGG | - | chr1_4:12696114-12696133 | Msa0150960:CDS | 20.0% |
| !!! | TTAAAAAAGATTTGAGATCT+TGG | - | chr1_4:12696417-12696436 | Msa0150960:intron | 20.0% |
| !!! | TAATTTTATTCAAAGCAGAT+CGG | - | chr1_4:12696443-12696462 | Msa0150960:intron | 20.0% |
| ! | CTCATTATAAAGAGATACAA+GGG | + | chr1_4:12695858-12695877 | None:intergenic | 25.0% |
| ! | ACTCATTATAAAGAGATACA+AGG | + | chr1_4:12695859-12695878 | None:intergenic | 25.0% |
| ! | CTAATAAAAGAAATTAAGGG+GGG | + | chr1_4:12696107-12696126 | None:intergenic | 25.0% |
| !!! | TTGTTAGCGATTTTTTACAT+GGG | - | chr1_4:12696219-12696238 | Msa0150960:intron | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | - | chr1_4:12696614-12696633 | Msa0150960:intron | 25.0% |
| ! | AACAAAACTGACGTATTTAA+GGG | + | chr1_4:12696664-12696683 | None:intergenic | 25.0% |
| ! | TAACAAAACTGACGTATTTA+AGG | + | chr1_4:12696665-12696684 | None:intergenic | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | - | chr1_4:12696690-12696709 | Msa0150960:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | + | chr1_4:12696834-12696853 | None:intergenic | 25.0% |
| ! | TGTCAATTATACGTTACATT+CGG | - | chr1_4:12696880-12696899 | Msa0150960:intron | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | - | chr1_4:12696911-12696930 | Msa0150960:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+CGG | + | chr1_4:12697105-12697124 | None:intergenic | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | - | chr1_4:12697330-12697349 | Msa0150960:intron | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | - | chr1_4:12697331-12697350 | Msa0150960:intron | 25.0% |
| ! | CTCATTATAAAGAGATACAA+GGG | + | chr1_4:12695858-12695877 | None:intergenic | 25.0% |
| ! | ACTCATTATAAAGAGATACA+AGG | + | chr1_4:12695859-12695878 | None:intergenic | 25.0% |
| ! | CTAATAAAAGAAATTAAGGG+GGG | + | chr1_4:12696107-12696126 | None:intergenic | 25.0% |
| !!! | TTGTTAGCGATTTTTTACAT+GGG | - | chr1_4:12696219-12696238 | Msa0150960:intron | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | - | chr1_4:12696614-12696633 | Msa0150960:intron | 25.0% |
| ! | AACAAAACTGACGTATTTAA+GGG | + | chr1_4:12696664-12696683 | None:intergenic | 25.0% |
| ! | TAACAAAACTGACGTATTTA+AGG | + | chr1_4:12696665-12696684 | None:intergenic | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | - | chr1_4:12696690-12696709 | Msa0150960:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | + | chr1_4:12696834-12696853 | None:intergenic | 25.0% |
| ! | TGTCAATTATACGTTACATT+CGG | - | chr1_4:12696880-12696899 | Msa0150960:intron | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | - | chr1_4:12696911-12696930 | Msa0150960:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+CGG | + | chr1_4:12697105-12697124 | None:intergenic | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | - | chr1_4:12697330-12697349 | Msa0150960:intron | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | - | chr1_4:12697331-12697350 | Msa0150960:intron | 25.0% |
| !!! | GCATCACTCTTTTTTTTTGA+AGG | - | chr1_4:12696182-12696201 | Msa0150960:CDS | 30.0% |
| !!! | CTTGTTAGCGATTTTTTACA+TGG | - | chr1_4:12696218-12696237 | Msa0150960:intron | 30.0% |
| AGGGGATGACAAAAAAAATA+TGG | - | chr1_4:12696276-12696295 | Msa0150960:intron | 30.0% | |
| AAATTGAGAGAAAGAGATAG+AGG | + | chr1_4:12696315-12696334 | None:intergenic | 30.0% | |
| ! | TGTCTGAGGGTTATAAATTT+TGG | - | chr1_4:12696374-12696393 | Msa0150960:intron | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | - | chr1_4:12696375-12696394 | Msa0150960:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | - | chr1_4:12696376-12696395 | Msa0150960:intron | 30.0% |
| AAATAAAGTGAGAGAAAAGG+TGG | - | chr1_4:12696617-12696636 | Msa0150960:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | - | chr1_4:12696618-12696637 | Msa0150960:intron | 30.0% | |
| GTGGGTGAAAAAAATAAACA+AGG | - | chr1_4:12696636-12696655 | Msa0150960:intron | 30.0% | |
| ACAAAACTGACGTATTTAAG+GGG | + | chr1_4:12696663-12696682 | None:intergenic | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | + | chr1_4:12697173-12697192 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | + | chr1_4:12697178-12697197 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | - | chr1_4:12697177-12697196 | Msa0150960:intron | 30.0% | |
| AAAAATATCTCAAGATGCCA+AGG | - | chr1_4:12697220-12697239 | Msa0150960:intron | 30.0% | |
| !!! | GCATCACTCTTTTTTTTTGA+AGG | - | chr1_4:12696182-12696201 | Msa0150960:CDS | 30.0% |
| !!! | CTTGTTAGCGATTTTTTACA+TGG | - | chr1_4:12696218-12696237 | Msa0150960:intron | 30.0% |
| AGGGGATGACAAAAAAAATA+TGG | - | chr1_4:12696276-12696295 | Msa0150960:intron | 30.0% | |
| AAATTGAGAGAAAGAGATAG+AGG | + | chr1_4:12696315-12696334 | None:intergenic | 30.0% | |
| ! | TGTCTGAGGGTTATAAATTT+TGG | - | chr1_4:12696374-12696393 | Msa0150960:intron | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | - | chr1_4:12696375-12696394 | Msa0150960:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | - | chr1_4:12696376-12696395 | Msa0150960:intron | 30.0% |
| AAATAAAGTGAGAGAAAAGG+TGG | - | chr1_4:12696617-12696636 | Msa0150960:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | - | chr1_4:12696618-12696637 | Msa0150960:intron | 30.0% | |
| GTGGGTGAAAAAAATAAACA+AGG | - | chr1_4:12696636-12696655 | Msa0150960:intron | 30.0% | |
| ACAAAACTGACGTATTTAAG+GGG | + | chr1_4:12696663-12696682 | None:intergenic | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | + | chr1_4:12697173-12697192 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | + | chr1_4:12697178-12697197 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | - | chr1_4:12697177-12697196 | Msa0150960:intron | 30.0% | |
| AAAAATATCTCAAGATGCCA+AGG | - | chr1_4:12697220-12697239 | Msa0150960:intron | 30.0% | |
| GAACGGATGTTGTTAAATGA+GGG | + | chr1_4:12695784-12695803 | None:intergenic | 35.0% | |
| CTCATTTAACAACATCCGTT+CGG | - | chr1_4:12695783-12695802 | Msa0150960:CDS | 35.0% | |
| ! | TCTCAAGGCATTATTTGCTT+CGG | - | chr1_4:12696129-12696148 | Msa0150960:CDS | 35.0% |
| TCGGAAAGAAAGATCTAACT+TGG | - | chr1_4:12696148-12696167 | Msa0150960:CDS | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | - | chr1_4:12696149-12696168 | Msa0150960:CDS | 35.0% | |
| ! | TTTTGTGTCTGTGTAGATAC+CGG | + | chr1_4:12696727-12696746 | None:intergenic | 35.0% |
| CTTAACTACGTGCTTATGTT+TGG | - | chr1_4:12697025-12697044 | Msa0150960:intron | 35.0% | |
| ! | GGAGATTCATTGTTTTCGAA+TGG | + | chr1_4:12697077-12697096 | None:intergenic | 35.0% |
| TTCGAAAACAATGAATCTCC+AGG | - | chr1_4:12697077-12697096 | Msa0150960:intron | 35.0% | |
| TCGAAAACAATGAATCTCCA+GGG | - | chr1_4:12697078-12697097 | Msa0150960:intron | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | - | chr1_4:12697136-12697155 | Msa0150960:intron | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | + | chr1_4:12697174-12697193 | None:intergenic | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | + | chr1_4:12697212-12697231 | None:intergenic | 35.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | - | chr1_4:12697253-12697272 | Msa0150960:intron | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | - | chr1_4:12697254-12697273 | Msa0150960:intron | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | - | chr1_4:12697337-12697356 | Msa0150960:intron | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | - | chr1_4:12697338-12697357 | Msa0150960:intron | 35.0% | |
| GAACGGATGTTGTTAAATGA+GGG | + | chr1_4:12695784-12695803 | None:intergenic | 35.0% | |
| CTCATTTAACAACATCCGTT+CGG | - | chr1_4:12695783-12695802 | Msa0150960:CDS | 35.0% | |
| ! | TCTCAAGGCATTATTTGCTT+CGG | - | chr1_4:12696129-12696148 | Msa0150960:CDS | 35.0% |
| TCGGAAAGAAAGATCTAACT+TGG | - | chr1_4:12696148-12696167 | Msa0150960:CDS | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | - | chr1_4:12696149-12696168 | Msa0150960:CDS | 35.0% | |
| ! | TTTTGTGTCTGTGTAGATAC+CGG | + | chr1_4:12696727-12696746 | None:intergenic | 35.0% |
| CTTAACTACGTGCTTATGTT+TGG | - | chr1_4:12697025-12697044 | Msa0150960:intron | 35.0% | |
| ! | GGAGATTCATTGTTTTCGAA+TGG | + | chr1_4:12697077-12697096 | None:intergenic | 35.0% |
| TTCGAAAACAATGAATCTCC+AGG | - | chr1_4:12697077-12697096 | Msa0150960:intron | 35.0% | |
| TCGAAAACAATGAATCTCCA+GGG | - | chr1_4:12697078-12697097 | Msa0150960:intron | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | - | chr1_4:12697136-12697155 | Msa0150960:intron | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | + | chr1_4:12697174-12697193 | None:intergenic | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | + | chr1_4:12697212-12697231 | None:intergenic | 35.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | - | chr1_4:12697253-12697272 | Msa0150960:intron | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | - | chr1_4:12697254-12697273 | Msa0150960:intron | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | - | chr1_4:12697337-12697356 | Msa0150960:intron | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | - | chr1_4:12697338-12697357 | Msa0150960:intron | 35.0% | |
| CGAACGGATGTTGTTAAATG+AGG | + | chr1_4:12695785-12695804 | None:intergenic | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+CGG | - | chr1_4:12696705-12696724 | Msa0150960:intron | 40.0% | |
| ! | TGTAGTCACCTTTTACATGC+TGG | - | chr1_4:12696804-12696823 | Msa0150960:intron | 40.0% |
| ATTTAGTCCGTTTGCAAGCA+GGG | - | chr1_4:12697048-12697067 | Msa0150960:intron | 40.0% | |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | + | chr1_4:12697143-12697162 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | + | chr1_4:12697146-12697165 | None:intergenic | 40.0% |
| ! | ACACAATTGTGTTGTTGCCT+TGG | + | chr1_4:12697240-12697259 | None:intergenic | 40.0% |
| GAGAGTCGAAAGATCATTAG+TGG | - | chr1_4:12697314-12697333 | Msa0150960:intron | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | - | chr1_4:12697342-12697361 | Msa0150960:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | - | chr1_4:12697365-12697384 | Msa0150960:intron | 40.0% | |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | + | chr1_4:12697392-12697411 | None:intergenic | 40.0% |
| CGAACGGATGTTGTTAAATG+AGG | + | chr1_4:12695785-12695804 | None:intergenic | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+CGG | - | chr1_4:12696705-12696724 | Msa0150960:intron | 40.0% | |
| ! | TGTAGTCACCTTTTACATGC+TGG | - | chr1_4:12696804-12696823 | Msa0150960:intron | 40.0% |
| ATTTAGTCCGTTTGCAAGCA+GGG | - | chr1_4:12697048-12697067 | Msa0150960:intron | 40.0% | |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | + | chr1_4:12697143-12697162 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | + | chr1_4:12697146-12697165 | None:intergenic | 40.0% |
| ! | ACACAATTGTGTTGTTGCCT+TGG | + | chr1_4:12697240-12697259 | None:intergenic | 40.0% |
| GAGAGTCGAAAGATCATTAG+TGG | - | chr1_4:12697314-12697333 | Msa0150960:intron | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | - | chr1_4:12697342-12697361 | Msa0150960:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | - | chr1_4:12697365-12697384 | Msa0150960:intron | 40.0% | |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | + | chr1_4:12697392-12697411 | None:intergenic | 40.0% |
| AAGCAGATCGGCGTATACAA+TGG | - | chr1_4:12696455-12696474 | Msa0150960:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | + | chr1_4:12696815-12696834 | None:intergenic | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | - | chr1_4:12697047-12697066 | Msa0150960:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | + | chr1_4:12697406-12697425 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | + | chr1_4:12697409-12697428 | None:intergenic | 45.0% |
| CCAAAACTATCGCAACCATG+AGG | - | chr1_4:12697406-12697425 | Msa0150960:intron | 45.0% | |
| AACCATGAGGCTCAATTCAG+AGG | - | chr1_4:12697419-12697438 | Msa0150960:intron | 45.0% | |
| AACTGCTCCTGGATTCAACA+TGG | - | chr1_4:12697448-12697467 | Msa0150960:intron | 45.0% | |
| CTCCTGGATTCAACATGGAT+GGG | - | chr1_4:12697453-12697472 | Msa0150960:intron | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | - | chr1_4:12697457-12697476 | Msa0150960:intron | 45.0% | |
| AAGCAGATCGGCGTATACAA+TGG | - | chr1_4:12696455-12696474 | Msa0150960:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | + | chr1_4:12696815-12696834 | None:intergenic | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | - | chr1_4:12697047-12697066 | Msa0150960:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | + | chr1_4:12697406-12697425 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | + | chr1_4:12697409-12697428 | None:intergenic | 45.0% |
| CCAAAACTATCGCAACCATG+AGG | - | chr1_4:12697406-12697425 | Msa0150960:intron | 45.0% | |
| AACCATGAGGCTCAATTCAG+AGG | - | chr1_4:12697419-12697438 | Msa0150960:intron | 45.0% | |
| AACTGCTCCTGGATTCAACA+TGG | - | chr1_4:12697448-12697467 | Msa0150960:intron | 45.0% | |
| CTCCTGGATTCAACATGGAT+GGG | - | chr1_4:12697453-12697472 | Msa0150960:intron | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | - | chr1_4:12697457-12697476 | Msa0150960:intron | 45.0% | |
| !! | AATAATAAATTAATTATTTG+AGG | - | chr1_4:12696563-12696582 | Msa0150960:intron | 5.0% |
| !! | AATAATAAATTAATTATTTG+AGG | - | chr1_4:12696563-12696582 | Msa0150960:intron | 5.0% |
| CAGAGCTTGATTGTGCCGAA+CGG | + | chr1_4:12695801-12695820 | None:intergenic | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | + | chr1_4:12697058-12697077 | None:intergenic | 50.0% | |
| ! | GCATCAATGTTTTCGGTCCC+TGG | + | chr1_4:12697098-12697117 | None:intergenic | 50.0% |
| CATGGGAATCATCACCACTG+AGG | - | chr1_4:12697271-12697290 | Msa0150960:intron | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | + | chr1_4:12697288-12697307 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | - | chr1_4:12697347-12697366 | Msa0150960:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | - | chr1_4:12697348-12697367 | Msa0150960:intron | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | + | chr1_4:12697357-12697376 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | - | chr1_4:12697355-12697374 | Msa0150960:intron | 50.0% | |
| TGCCTCTGAATTGAGCCTCA+TGG | + | chr1_4:12697424-12697443 | None:intergenic | 50.0% | |
| GCTCCTGGATTCAACATGGA+TGG | - | chr1_4:12697452-12697471 | Msa0150960:intron | 50.0% | |
| GACCCATCCATGTTGAATCC+AGG | + | chr1_4:12697458-12697477 | None:intergenic | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | - | chr1_4:12697458-12697477 | Msa0150960:intron | 50.0% | |
| CAGAGCTTGATTGTGCCGAA+CGG | + | chr1_4:12695801-12695820 | None:intergenic | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | + | chr1_4:12697058-12697077 | None:intergenic | 50.0% | |
| ! | GCATCAATGTTTTCGGTCCC+TGG | + | chr1_4:12697098-12697117 | None:intergenic | 50.0% |
| CATGGGAATCATCACCACTG+AGG | - | chr1_4:12697271-12697290 | Msa0150960:intron | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | + | chr1_4:12697288-12697307 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | - | chr1_4:12697347-12697366 | Msa0150960:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | - | chr1_4:12697348-12697367 | Msa0150960:intron | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | + | chr1_4:12697357-12697376 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | - | chr1_4:12697355-12697374 | Msa0150960:intron | 50.0% | |
| TGCCTCTGAATTGAGCCTCA+TGG | + | chr1_4:12697424-12697443 | None:intergenic | 50.0% | |
| GCTCCTGGATTCAACATGGA+TGG | - | chr1_4:12697452-12697471 | Msa0150960:intron | 50.0% | |
| GACCCATCCATGTTGAATCC+AGG | + | chr1_4:12697458-12697477 | None:intergenic | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | - | chr1_4:12697458-12697477 | Msa0150960:intron | 50.0% | |
| CGTTCGGCACAATCAAGCTC+TGG | - | chr1_4:12695799-12695818 | Msa0150960:CDS | 55.0% | |
| ! | AGAGGCATGTCAACTGCTCC+TGG | - | chr1_4:12697437-12697456 | Msa0150960:intron | 55.0% |
| CGTTCGGCACAATCAAGCTC+TGG | - | chr1_4:12695799-12695818 | Msa0150960:CDS | 55.0% | |
| ! | AGAGGCATGTCAACTGCTCC+TGG | - | chr1_4:12697437-12697456 | Msa0150960:intron | 55.0% |
| AACATGGATGGGTCGGGTGC+TGG | - | chr1_4:12697464-12697483 | Msa0150960:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | - | chr1_4:12697485-12697504 | Msa0150960:CDS | 60.0% | |
| AACATGGATGGGTCGGGTGC+TGG | - | chr1_4:12697464-12697483 | Msa0150960:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | - | chr1_4:12697485-12697504 | Msa0150960:CDS | 60.0% | |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | - | chr1_4:12697467-12697486 | Msa0150960:CDS | 65.0% |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | - | chr1_4:12697467-12697486 | Msa0150960:CDS | 65.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | - | chr1_4:12697479-12697498 | Msa0150960:CDS | 70.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | - | chr1_4:12697479-12697498 | Msa0150960:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 12695766 | 12697517 | 12695766 | ID=Msa0150960;Name=Msa0150960 |
| chr1_4 | mRNA | 12695766 | 12697517 | 12695766 | ID=Msa0150960-mRNA-1;Parent=Msa0150960;Name=Msa0150960-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.5|1|1|2|0|172 |
| chr1_4 | exon | 12697463 | 12697517 | 12697463 | ID=Msa0150960-mRNA-1:exon:5118;Parent=Msa0150960-mRNA-1 |
| chr1_4 | exon | 12695766 | 12696229 | 12695766 | ID=Msa0150960-mRNA-1:exon:5117;Parent=Msa0150960-mRNA-1 |
| chr1_4 | CDS | 12697463 | 12697517 | 12697463 | ID=Msa0150960-mRNA-1:cds;Parent=Msa0150960-mRNA-1 |
| chr1_4 | CDS | 12695766 | 12696229 | 12695766 | ID=Msa0150960-mRNA-1:cds;Parent=Msa0150960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
