Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150980 | XP_013466407.1 | 79.091 | 110 | 14 | 1 | 7 | 107 | 49 | 158 | 7.01e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150980 | sp|O23310|NFYB3_ARATH | 58.065 | 93 | 39 | 0 | 6 | 98 | 17 | 109 | 4.61e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150980 | A0A072VGA7 | 79.091 | 110 | 14 | 1 | 7 | 107 | 49 | 158 | 3.35e-55 | 179 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0150980 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150980 | MtrunA17_Chr1g0159271 | 78.495 | 93 | 11 | 1 | 24 | 107 | 1 | 93 | 7.59e-48 | 149 |
| Msa0150980 | MtrunA17_Chr8g0382931 | 54.286 | 105 | 38 | 1 | 4 | 98 | 12 | 116 | 3.76e-34 | 117 |
| Msa0150980 | MtrunA17_Chr1g0185911 | 49.565 | 115 | 52 | 1 | 6 | 120 | 25 | 133 | 5.12e-34 | 116 |
| Msa0150980 | MtrunA17_Chr1g0165041 | 53.333 | 90 | 42 | 0 | 9 | 98 | 5 | 94 | 1.14e-32 | 113 |
| Msa0150980 | MtrunA17_Chr5g0446491 | 55.914 | 93 | 40 | 1 | 6 | 98 | 20 | 111 | 1.26e-32 | 112 |
| Msa0150980 | MtrunA17_Chr7g0263601 | 53.333 | 90 | 42 | 0 | 9 | 98 | 25 | 114 | 1.27e-32 | 112 |
| Msa0150980 | MtrunA17_Chr2g0290491 | 50.000 | 110 | 54 | 1 | 9 | 118 | 16 | 124 | 3.25e-32 | 111 |
| Msa0150980 | MtrunA17_Chr3g0102351 | 55.914 | 93 | 40 | 1 | 6 | 98 | 24 | 115 | 5.47e-32 | 111 |
| Msa0150980 | MtrunA17_Chr4g0076321 | 57.143 | 84 | 36 | 0 | 15 | 98 | 24 | 107 | 4.62e-30 | 105 |
| Msa0150980 | MtrunA17_Chr4g0076381 | 50.000 | 90 | 45 | 0 | 9 | 98 | 57 | 146 | 2.50e-29 | 105 |
| Msa0150980 | MtrunA17_Chr8g0384451 | 52.941 | 85 | 40 | 0 | 15 | 99 | 45 | 129 | 8.32e-29 | 103 |
| Msa0150980 | MtrunA17_Chr1g0195851 | 52.381 | 84 | 40 | 0 | 15 | 98 | 41 | 124 | 4.45e-28 | 101 |
| Msa0150980 | MtrunA17_Chr4g0067091 | 50.000 | 84 | 42 | 0 | 15 | 98 | 27 | 110 | 1.37e-26 | 98.2 |
| Msa0150980 | MtrunA17_Chr2g0296321 | 48.810 | 84 | 43 | 0 | 15 | 98 | 71 | 154 | 6.57e-26 | 97.4 |
| Msa0150980 | MtrunA17_Chr1g0158951 | 52.326 | 86 | 32 | 1 | 41 | 117 | 20 | 105 | 5.45e-25 | 91.3 |
| Msa0150980 | MtrunA17_Chr1g0159291 | 45.000 | 80 | 44 | 0 | 11 | 90 | 3 | 82 | 9.37e-24 | 87.4 |
| Msa0150980 | MtrunA17_Chr1g0191981 | 41.758 | 91 | 51 | 1 | 10 | 98 | 2 | 92 | 1.34e-21 | 83.2 |
| Msa0150980 | MtrunA17_Chr5g0446601 | 35.632 | 87 | 56 | 0 | 15 | 101 | 29 | 115 | 3.20e-14 | 65.5 |
| Msa0150980 | MtrunA17_Chr2g0307551 | 26.733 | 101 | 74 | 0 | 15 | 115 | 16 | 116 | 6.71e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150980 | AT4G14540.1 | 58.065 | 93 | 39 | 0 | 6 | 98 | 17 | 109 | 4.69e-35 | 119 |
| Msa0150980 | AT5G47640.1 | 50.000 | 116 | 55 | 2 | 6 | 121 | 24 | 136 | 9.05e-34 | 116 |
| Msa0150980 | AT2G38880.3 | 50.000 | 112 | 54 | 2 | 5 | 116 | 16 | 125 | 6.19e-33 | 112 |
| Msa0150980 | AT2G38880.7 | 50.000 | 112 | 52 | 2 | 5 | 116 | 16 | 123 | 6.79e-33 | 112 |
| Msa0150980 | AT2G38880.2 | 50.000 | 112 | 54 | 2 | 5 | 116 | 16 | 125 | 8.10e-33 | 112 |
| Msa0150980 | AT2G38880.1 | 50.000 | 112 | 54 | 2 | 5 | 116 | 16 | 125 | 8.10e-33 | 112 |
| Msa0150980 | AT2G38880.5 | 50.000 | 112 | 54 | 2 | 5 | 116 | 16 | 125 | 8.10e-33 | 112 |
| Msa0150980 | AT3G53340.5 | 47.321 | 112 | 59 | 0 | 9 | 120 | 28 | 139 | 8.23e-33 | 113 |
| Msa0150980 | AT3G53340.1 | 47.321 | 112 | 59 | 0 | 9 | 120 | 28 | 139 | 8.23e-33 | 113 |
| Msa0150980 | AT2G38880.4 | 51.064 | 94 | 46 | 0 | 5 | 98 | 16 | 109 | 4.98e-32 | 109 |
| Msa0150980 | AT2G38880.11 | 51.064 | 94 | 46 | 0 | 5 | 98 | 16 | 109 | 1.33e-31 | 110 |
| Msa0150980 | AT2G38880.8 | 51.064 | 94 | 46 | 0 | 5 | 98 | 16 | 109 | 1.33e-31 | 110 |
| Msa0150980 | AT3G53340.4 | 53.333 | 90 | 42 | 0 | 9 | 98 | 28 | 117 | 1.78e-31 | 108 |
| Msa0150980 | AT2G37060.2 | 48.305 | 118 | 55 | 2 | 9 | 120 | 29 | 146 | 2.45e-31 | 109 |
| Msa0150980 | AT2G37060.3 | 48.305 | 118 | 55 | 2 | 9 | 120 | 29 | 146 | 2.45e-31 | 109 |
| Msa0150980 | AT2G37060.1 | 48.305 | 118 | 55 | 2 | 9 | 120 | 29 | 146 | 2.45e-31 | 109 |
| Msa0150980 | AT2G38880.9 | 51.064 | 94 | 46 | 0 | 5 | 98 | 16 | 109 | 2.70e-31 | 108 |
| Msa0150980 | AT2G38880.10 | 51.064 | 94 | 46 | 0 | 5 | 98 | 16 | 109 | 2.70e-31 | 108 |
| Msa0150980 | AT2G38880.6 | 51.064 | 94 | 46 | 0 | 5 | 98 | 16 | 109 | 2.70e-31 | 108 |
| Msa0150980 | AT3G53340.3 | 52.747 | 91 | 43 | 0 | 8 | 98 | 27 | 117 | 1.25e-30 | 107 |
| Msa0150980 | AT3G53340.2 | 52.747 | 91 | 43 | 0 | 8 | 98 | 27 | 117 | 1.25e-30 | 107 |
| Msa0150980 | AT1G21970.1 | 50.000 | 90 | 45 | 0 | 9 | 98 | 58 | 147 | 9.72e-30 | 107 |
| Msa0150980 | AT5G47670.2 | 50.000 | 90 | 45 | 0 | 9 | 98 | 28 | 117 | 1.30e-29 | 106 |
| Msa0150980 | AT2G13570.1 | 55.294 | 85 | 38 | 0 | 15 | 99 | 41 | 125 | 1.42e-29 | 106 |
| Msa0150980 | AT5G47670.1 | 50.000 | 90 | 45 | 0 | 9 | 98 | 57 | 146 | 2.44e-29 | 106 |
| Msa0150980 | AT5G47670.3 | 50.000 | 90 | 45 | 0 | 9 | 98 | 57 | 146 | 2.44e-29 | 106 |
| Msa0150980 | AT2G47810.1 | 48.810 | 84 | 43 | 0 | 15 | 98 | 56 | 139 | 1.20e-26 | 97.4 |
| Msa0150980 | AT1G09030.1 | 41.509 | 106 | 54 | 2 | 11 | 108 | 3 | 108 | 5.65e-24 | 89.7 |
| Msa0150980 | AT5G08190.1 | 30.097 | 103 | 69 | 1 | 15 | 117 | 16 | 115 | 1.05e-11 | 58.9 |
| Msa0150980 | AT5G08190.2 | 31.818 | 88 | 57 | 1 | 15 | 102 | 16 | 100 | 4.85e-11 | 57.0 |
Find 29 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTATCGCAACCATGCTTA+TGG | 0.229358 | 1_4:-12705693 | Msa0150980:CDS |
| GATTCTTGTCAAATTTCTAA+TGG | 0.267704 | 1_4:+12705932 | None:intergenic |
| TTAGTGGTGAAGATTTAATA+TGG | 0.318108 | 1_4:-12705773 | Msa0150980:CDS |
| AAGCATGGTTGCGATAGTTT+TGG | 0.320197 | 1_4:+12705697 | None:intergenic |
| ATATGGGCCATGGGTAGGTT+AGG | 0.325129 | 1_4:-12705756 | Msa0150980:CDS |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1_4:-12705748 | Msa0150980:CDS |
| CGCAGTTCGTCATTCCTTGT+TGG | 0.350817 | 1_4:+12705960 | None:intergenic |
| GGGTTCAACAAGGATGGATT+AGG | 0.381532 | 1_4:-12705672 | Msa0150980:CDS |
| ATTCTTGTCAAATTTCTAAT+GGG | 0.396632 | 1_4:+12705933 | None:intergenic |
| ACTATCGCAACCATGCTTAT+GGG | 0.422034 | 1_4:-12705692 | Msa0150980:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.451016 | 1_4:-12705755 | Msa0150980:CDS |
| GATGTGTGTGTCTGAATTCA+TGG | 0.465046 | 1_4:-12705850 | Msa0150980:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1_4:-12705789 | Msa0150980:CDS |
| TAGTGGTGAAGATTTAATAT+GGG | 0.494669 | 1_4:-12705772 | Msa0150980:CDS |
| AATTGCATGCATATCAATGT+TGG | 0.519524 | 1_4:+12705622 | None:intergenic |
| TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1_4:-12705738 | Msa0150980:CDS |
| GCTTATGGGTTCAACAAGGA+TGG | 0.530192 | 1_4:-12705678 | Msa0150980:CDS |
| TGAAGATTTAATATGGGCCA+TGG | 0.535798 | 1_4:-12705766 | Msa0150980:CDS |
| AGTGGCTCGAGCAGTGGCAA+TGG | 0.552171 | 1_4:-12705645 | Msa0150980:CDS |
| ATTTAATATGGGCCATGGGT+AGG | 0.572332 | 1_4:-12705761 | Msa0150980:CDS |
| AAGGATGGATTAGGTGCTAG+TGG | 0.590094 | 1_4:-12705663 | Msa0150980:CDS |
| GAAGATTTAATATGGGCCAT+GGG | 0.602532 | 1_4:-12705765 | Msa0150980:CDS |
| CCTTGTTGAACCCATAAGCA+TGG | 0.602629 | 1_4:+12705682 | None:intergenic |
| GGTGCTAGTGGCTCGAGCAG+TGG | 0.605088 | 1_4:-12705651 | Msa0150980:CDS |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1_4:+12705749 | None:intergenic |
| TGCAGGTAGGGAGTCCAACA+AGG | 0.616172 | 1_4:-12705974 | Msa0150980:intron |
| CCATGCTTATGGGTTCAACA+AGG | 0.642059 | 1_4:-12705682 | Msa0150980:CDS |
| ATGTGTGTGTCTGAATTCAT+GGG | 0.648992 | 1_4:-12705849 | Msa0150980:CDS |
| CATGGGCATCATCATCACTG+AGG | 0.744966 | 1_4:-12705832 | Msa0150980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTGTATTTAAAACTAAT+AGG | - | chr1_4:12706137-12706156 | Msa0150980:intron | 10.0% |
| !!! | TATTGTATTTAAAACTAATA+GGG | - | chr1_4:12706138-12706157 | Msa0150980:intron | 10.0% |
| !! | AATTAAATTAAAACATGTAA+TGG | + | chr1_4:12706654-12706673 | None:intergenic | 10.0% |
| !!! | TTTTATTGAAAATAATTTGA+AGG | + | chr1_4:12706680-12706699 | None:intergenic | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+AGG | - | chr1_4:12706137-12706156 | Msa0150980:intron | 10.0% |
| !!! | TATTGTATTTAAAACTAATA+GGG | - | chr1_4:12706138-12706157 | Msa0150980:intron | 10.0% |
| !! | AATTAAATTAAAACATGTAA+TGG | + | chr1_4:12706654-12706673 | None:intergenic | 10.0% |
| !!! | TTTTATTGAAAATAATTTGA+AGG | + | chr1_4:12706680-12706699 | None:intergenic | 10.0% |
| !!! | TTGAATGAAATTTTGATTTA+AGG | - | chr1_4:12705869-12705888 | Msa0150980:CDS | 15.0% |
| !!! | TGAATGAAATTTTGATTTAA+GGG | - | chr1_4:12705870-12705889 | Msa0150980:CDS | 15.0% |
| !!! | TTGAATGAAATTTTGATTTA+AGG | - | chr1_4:12705869-12705888 | Msa0150980:CDS | 15.0% |
| !!! | TGAATGAAATTTTGATTTAA+GGG | - | chr1_4:12705870-12705889 | Msa0150980:CDS | 15.0% |
| !!! | GAATGAAATTTTGATTTAAG+GGG | - | chr1_4:12705871-12705890 | Msa0150980:CDS | 20.0% |
| !! | AAAAAATTGAAATCTTAGCA+AGG | + | chr1_4:12706106-12706125 | None:intergenic | 20.0% |
| !!! | ACAAAACTGAAGTATTTAAA+GGG | + | chr1_4:12706272-12706291 | None:intergenic | 20.0% |
| !!! | AACAAAACTGAAGTATTTAA+AGG | + | chr1_4:12706273-12706292 | None:intergenic | 20.0% |
| !!! | CTTTTCTTCTTTTTAATCTA+AGG | + | chr1_4:12706470-12706489 | None:intergenic | 20.0% |
| !!! | GAAATTATACGTTACATTTT+TGG | - | chr1_4:12706489-12706508 | Msa0150980:intron | 20.0% |
| !! | ATTCTTGTCAAATTTCTAAT+GGG | + | chr1_4:12706828-12706847 | None:intergenic | 20.0% |
| !!! | GAATGAAATTTTGATTTAAG+GGG | - | chr1_4:12705871-12705890 | Msa0150980:CDS | 20.0% |
| !! | AAAAAATTGAAATCTTAGCA+AGG | + | chr1_4:12706106-12706125 | None:intergenic | 20.0% |
| !!! | ACAAAACTGAAGTATTTAAA+GGG | + | chr1_4:12706272-12706291 | None:intergenic | 20.0% |
| !!! | AACAAAACTGAAGTATTTAA+AGG | + | chr1_4:12706273-12706292 | None:intergenic | 20.0% |
| !!! | CTTTTCTTCTTTTTAATCTA+AGG | + | chr1_4:12706470-12706489 | None:intergenic | 20.0% |
| !!! | GAAATTATACGTTACATTTT+TGG | - | chr1_4:12706489-12706508 | Msa0150980:intron | 20.0% |
| !! | ATTCTTGTCAAATTTCTAAT+GGG | + | chr1_4:12706828-12706847 | None:intergenic | 20.0% |
| ! | AGAAAAGAAAGATCTAACTT+GGG | - | chr1_4:12705792-12705811 | Msa0150980:CDS | 25.0% |
| !!! | TTGTTAACCATTTTTGACAT+GGG | - | chr1_4:12705832-12705851 | Msa0150980:CDS | 25.0% |
| ! | GGATGCCAAAAAAAAATATA+TGG | - | chr1_4:12705892-12705911 | Msa0150980:CDS | 25.0% |
| !!! | GGGATCCATATATTTTTTTT+TGG | + | chr1_4:12705900-12705919 | None:intergenic | 25.0% |
| !! | TGTGTGAGTGTTATAAATTT+TGG | - | chr1_4:12705988-12706007 | Msa0150980:intron | 25.0% |
| !! | GTGTGAGTGTTATAAATTTT+GGG | - | chr1_4:12705989-12706008 | Msa0150980:intron | 25.0% |
| !! | TGTGAGTGTTATAAATTTTG+GGG | - | chr1_4:12705990-12706009 | Msa0150980:intron | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | + | chr1_4:12706018-12706037 | None:intergenic | 25.0% |
| !! | CTAAAAAAGATTTGAGATCT+TGG | - | chr1_4:12706031-12706050 | Msa0150980:intron | 25.0% |
| ! | AATAAAAGTGAGAGAAAAGT+TGG | - | chr1_4:12706226-12706245 | Msa0150980:intron | 25.0% |
| ! | ATAAAAGTGAGAGAAAAGTT+GGG | - | chr1_4:12706227-12706246 | Msa0150980:intron | 25.0% |
| ! | TTGGGTGAAAAAAATAAACA+AGG | - | chr1_4:12706245-12706264 | Msa0150980:intron | 25.0% |
| ! | TGGGTGAAAAAAATAAACAA+GGG | - | chr1_4:12706246-12706265 | Msa0150980:intron | 25.0% |
| !!! | TTTTTTGTCTGTGTATATAC+TGG | + | chr1_4:12706336-12706355 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTAATCTAAGG+TGG | + | chr1_4:12706467-12706486 | None:intergenic | 25.0% |
| ! | GATTCTTGTCAAATTTCTAA+TGG | + | chr1_4:12706829-12706848 | None:intergenic | 25.0% |
| ! | AAAAATATCTCAAGATGCTA+AGG | - | chr1_4:12706875-12706894 | Msa0150980:intron | 25.0% |
| ! | TTAGTGGTGAAGATTTAATA+TGG | - | chr1_4:12706985-12707004 | Msa0150980:intron | 25.0% |
| ! | TAGTGGTGAAGATTTAATAT+GGG | - | chr1_4:12706986-12707005 | Msa0150980:intron | 25.0% |
| ! | AGAAAAGAAAGATCTAACTT+GGG | - | chr1_4:12705792-12705811 | Msa0150980:CDS | 25.0% |
| !!! | TTGTTAACCATTTTTGACAT+GGG | - | chr1_4:12705832-12705851 | Msa0150980:CDS | 25.0% |
| ! | GGATGCCAAAAAAAAATATA+TGG | - | chr1_4:12705892-12705911 | Msa0150980:CDS | 25.0% |
| !!! | GGGATCCATATATTTTTTTT+TGG | + | chr1_4:12705900-12705919 | None:intergenic | 25.0% |
| !! | TGTGTGAGTGTTATAAATTT+TGG | - | chr1_4:12705988-12706007 | Msa0150980:intron | 25.0% |
| !! | GTGTGAGTGTTATAAATTTT+GGG | - | chr1_4:12705989-12706008 | Msa0150980:intron | 25.0% |
| !! | TGTGAGTGTTATAAATTTTG+GGG | - | chr1_4:12705990-12706009 | Msa0150980:intron | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | + | chr1_4:12706018-12706037 | None:intergenic | 25.0% |
| !! | CTAAAAAAGATTTGAGATCT+TGG | - | chr1_4:12706031-12706050 | Msa0150980:intron | 25.0% |
| ! | AATAAAAGTGAGAGAAAAGT+TGG | - | chr1_4:12706226-12706245 | Msa0150980:intron | 25.0% |
| ! | ATAAAAGTGAGAGAAAAGTT+GGG | - | chr1_4:12706227-12706246 | Msa0150980:intron | 25.0% |
| ! | TTGGGTGAAAAAAATAAACA+AGG | - | chr1_4:12706245-12706264 | Msa0150980:intron | 25.0% |
| ! | TGGGTGAAAAAAATAAACAA+GGG | - | chr1_4:12706246-12706265 | Msa0150980:intron | 25.0% |
| !!! | TTTTTTGTCTGTGTATATAC+TGG | + | chr1_4:12706336-12706355 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTAATCTAAGG+TGG | + | chr1_4:12706467-12706486 | None:intergenic | 25.0% |
| ! | GATTCTTGTCAAATTTCTAA+TGG | + | chr1_4:12706829-12706848 | None:intergenic | 25.0% |
| ! | AAAAATATCTCAAGATGCTA+AGG | - | chr1_4:12706875-12706894 | Msa0150980:intron | 25.0% |
| ! | TTAGTGGTGAAGATTTAATA+TGG | - | chr1_4:12706985-12707004 | Msa0150980:intron | 25.0% |
| ! | TAGTGGTGAAGATTTAATAT+GGG | - | chr1_4:12706986-12707005 | Msa0150980:intron | 25.0% |
| AATCTAAGAGAAGCAGTTAA+GGG | + | chr1_4:12705752-12705771 | None:intergenic | 30.0% | |
| ! | AGTTAGATCTTTCTTTTCTG+AGG | + | chr1_4:12705791-12705810 | None:intergenic | 30.0% |
| CAGAAAAGAAAGATCTAACT+TGG | - | chr1_4:12705791-12705810 | Msa0150980:CDS | 30.0% | |
| !! | CTTGTTAACCATTTTTGACA+TGG | - | chr1_4:12705831-12705850 | Msa0150980:CDS | 30.0% |
| ! | GTATTTTCCCATGTCAAAAA+TGG | + | chr1_4:12705842-12705861 | None:intergenic | 30.0% |
| AAGAGATAGAGGTCAAATAT+GGG | + | chr1_4:12705920-12705939 | None:intergenic | 30.0% | |
| AAAGAGATAGAGGTCAAATA+TGG | + | chr1_4:12705921-12705940 | None:intergenic | 30.0% | |
| AAATTGAGAGAAAGAGATAG+AGG | + | chr1_4:12705931-12705950 | None:intergenic | 30.0% | |
| TCCATTGTTGATCTATCTAA+TGG | - | chr1_4:12706299-12706318 | Msa0150980:intron | 30.0% | |
| ACCATTAGATAGATCAACAA+TGG | + | chr1_4:12706303-12706322 | None:intergenic | 30.0% | |
| ! | CCTTCTTTTTATTGCATAGA+GGG | + | chr1_4:12706540-12706559 | None:intergenic | 30.0% |
| ! | TCCTTCTTTTTATTGCATAG+AGG | + | chr1_4:12706541-12706560 | None:intergenic | 30.0% |
| ! | CTTAACTATGTGCTTCTTTT+TGG | - | chr1_4:12706749-12706768 | Msa0150980:intron | 30.0% |
| AATCTAAGAGAAGCAGTTAA+GGG | + | chr1_4:12705752-12705771 | None:intergenic | 30.0% | |
| ! | AGTTAGATCTTTCTTTTCTG+AGG | + | chr1_4:12705791-12705810 | None:intergenic | 30.0% |
| CAGAAAAGAAAGATCTAACT+TGG | - | chr1_4:12705791-12705810 | Msa0150980:CDS | 30.0% | |
| !! | CTTGTTAACCATTTTTGACA+TGG | - | chr1_4:12705831-12705850 | Msa0150980:CDS | 30.0% |
| ! | GTATTTTCCCATGTCAAAAA+TGG | + | chr1_4:12705842-12705861 | None:intergenic | 30.0% |
| AAGAGATAGAGGTCAAATAT+GGG | + | chr1_4:12705920-12705939 | None:intergenic | 30.0% | |
| AAAGAGATAGAGGTCAAATA+TGG | + | chr1_4:12705921-12705940 | None:intergenic | 30.0% | |
| AAATTGAGAGAAAGAGATAG+AGG | + | chr1_4:12705931-12705950 | None:intergenic | 30.0% | |
| TCCATTGTTGATCTATCTAA+TGG | - | chr1_4:12706299-12706318 | Msa0150980:intron | 30.0% | |
| ACCATTAGATAGATCAACAA+TGG | + | chr1_4:12706303-12706322 | None:intergenic | 30.0% | |
| ! | CCTTCTTTTTATTGCATAGA+GGG | + | chr1_4:12706540-12706559 | None:intergenic | 30.0% |
| ! | TCCTTCTTTTTATTGCATAG+AGG | + | chr1_4:12706541-12706560 | None:intergenic | 30.0% |
| ! | CTTAACTATGTGCTTCTTTT+TGG | - | chr1_4:12706749-12706768 | Msa0150980:intron | 30.0% |
| ATCTAAGAGAAGCAGTTAAG+GGG | + | chr1_4:12705751-12705770 | None:intergenic | 35.0% | |
| GAATCTAAGAGAAGCAGTTA+AGG | + | chr1_4:12705753-12705772 | None:intergenic | 35.0% | |
| CCCTCTATGCAATAAAAAGA+AGG | - | chr1_4:12706537-12706556 | Msa0150980:intron | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | + | chr1_4:12706867-12706886 | None:intergenic | 35.0% |
| ATGTGTGTGTCTGAATTCAT+GGG | - | chr1_4:12706909-12706928 | Msa0150980:intron | 35.0% | |
| TGAAGATTTAATATGGGCCA+TGG | - | chr1_4:12706992-12707011 | Msa0150980:intron | 35.0% | |
| GAAGATTTAATATGGGCCAT+GGG | - | chr1_4:12706993-12707012 | Msa0150980:intron | 35.0% | |
| ATCTAAGAGAAGCAGTTAAG+GGG | + | chr1_4:12705751-12705770 | None:intergenic | 35.0% | |
| GAATCTAAGAGAAGCAGTTA+AGG | + | chr1_4:12705753-12705772 | None:intergenic | 35.0% | |
| CCCTCTATGCAATAAAAAGA+AGG | - | chr1_4:12706537-12706556 | Msa0150980:intron | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | + | chr1_4:12706867-12706886 | None:intergenic | 35.0% |
| ATGTGTGTGTCTGAATTCAT+GGG | - | chr1_4:12706909-12706928 | Msa0150980:intron | 35.0% | |
| TGAAGATTTAATATGGGCCA+TGG | - | chr1_4:12706992-12707011 | Msa0150980:intron | 35.0% | |
| GAAGATTTAATATGGGCCAT+GGG | - | chr1_4:12706993-12707012 | Msa0150980:intron | 35.0% | |
| TCTAAGAGAAGCAGTTAAGG+GGG | + | chr1_4:12705750-12705769 | None:intergenic | 40.0% | |
| CTGCTTCTCTTAGATTCTCA+AGG | - | chr1_4:12705756-12705775 | Msa0150980:CDS | 40.0% | |
| ! | TGTAGTCACCTTTTACAAGC+TGG | - | chr1_4:12706437-12706456 | Msa0150980:intron | 40.0% |
| TTTGGATTTAGTCCCTTTGC+AGG | - | chr1_4:12706767-12706786 | Msa0150980:intron | 40.0% | |
| ATTTAGTCCCTTTGCAGGTA+GGG | - | chr1_4:12706772-12706791 | Msa0150980:intron | 40.0% | |
| GATGTGTGTGTCTGAATTCA+TGG | - | chr1_4:12706908-12706927 | Msa0150980:intron | 40.0% | |
| GAGAGTCGAAAGATCATTAG+TGG | - | chr1_4:12706969-12706988 | Msa0150980:intron | 40.0% | |
| ATTTAATATGGGCCATGGGT+AGG | - | chr1_4:12706997-12707016 | Msa0150980:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | - | chr1_4:12707020-12707039 | Msa0150980:intron | 40.0% | |
| !! | TTTTGGAGGAGAACAGATAG+AGG | + | chr1_4:12707047-12707066 | None:intergenic | 40.0% |
| ! | AAGCATGGTTGCGATAGTTT+TGG | + | chr1_4:12707064-12707083 | None:intergenic | 40.0% |
| AACTATCGCAACCATGCTTA+TGG | - | chr1_4:12707065-12707084 | Msa0150980:intron | 40.0% | |
| ACTATCGCAACCATGCTTAT+GGG | - | chr1_4:12707066-12707085 | Msa0150980:intron | 40.0% | |
| TCTAAGAGAAGCAGTTAAGG+GGG | + | chr1_4:12705750-12705769 | None:intergenic | 40.0% | |
| CTGCTTCTCTTAGATTCTCA+AGG | - | chr1_4:12705756-12705775 | Msa0150980:CDS | 40.0% | |
| ! | TGTAGTCACCTTTTACAAGC+TGG | - | chr1_4:12706437-12706456 | Msa0150980:intron | 40.0% |
| TTTGGATTTAGTCCCTTTGC+AGG | - | chr1_4:12706767-12706786 | Msa0150980:intron | 40.0% | |
| ATTTAGTCCCTTTGCAGGTA+GGG | - | chr1_4:12706772-12706791 | Msa0150980:intron | 40.0% | |
| GATGTGTGTGTCTGAATTCA+TGG | - | chr1_4:12706908-12706927 | Msa0150980:intron | 40.0% | |
| GAGAGTCGAAAGATCATTAG+TGG | - | chr1_4:12706969-12706988 | Msa0150980:intron | 40.0% | |
| ATTTAATATGGGCCATGGGT+AGG | - | chr1_4:12706997-12707016 | Msa0150980:intron | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | - | chr1_4:12707020-12707039 | Msa0150980:intron | 40.0% | |
| !! | TTTTGGAGGAGAACAGATAG+AGG | + | chr1_4:12707047-12707066 | None:intergenic | 40.0% |
| ! | AAGCATGGTTGCGATAGTTT+TGG | + | chr1_4:12707064-12707083 | None:intergenic | 40.0% |
| AACTATCGCAACCATGCTTA+TGG | - | chr1_4:12707065-12707084 | Msa0150980:intron | 40.0% | |
| ACTATCGCAACCATGCTTAT+GGG | - | chr1_4:12707066-12707085 | Msa0150980:intron | 40.0% | |
| CTAAGAGAAGCAGTTAAGGG+GGG | + | chr1_4:12705749-12705768 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | - | chr1_4:12706069-12706088 | Msa0150980:intron | 45.0% | |
| CATGCATCACTTGACGTTAG+TGG | + | chr1_4:12706417-12706436 | None:intergenic | 45.0% | |
| GTGGCAAACCAGCTTGTAAA+AGG | + | chr1_4:12706448-12706467 | None:intergenic | 45.0% | |
| GATTTAGTCCCTTTGCAGGT+AGG | - | chr1_4:12706771-12706790 | Msa0150980:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | + | chr1_4:12707061-12707080 | None:intergenic | 45.0% |
| CCTTGTTGAACCCATAAGCA+TGG | + | chr1_4:12707079-12707098 | None:intergenic | 45.0% | |
| CCATGCTTATGGGTTCAACA+AGG | - | chr1_4:12707076-12707095 | Msa0150980:intron | 45.0% | |
| GCTTATGGGTTCAACAAGGA+TGG | - | chr1_4:12707080-12707099 | Msa0150980:intron | 45.0% | |
| ! | GGGTTCAACAAGGATGGATT+AGG | - | chr1_4:12707086-12707105 | Msa0150980:intron | 45.0% |
| !! | AAGGATGGATTAGGTGCTAG+TGG | - | chr1_4:12707095-12707114 | Msa0150980:intron | 45.0% |
| CTAAGAGAAGCAGTTAAGGG+GGG | + | chr1_4:12705749-12705768 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | - | chr1_4:12706069-12706088 | Msa0150980:intron | 45.0% | |
| CATGCATCACTTGACGTTAG+TGG | + | chr1_4:12706417-12706436 | None:intergenic | 45.0% | |
| GTGGCAAACCAGCTTGTAAA+AGG | + | chr1_4:12706448-12706467 | None:intergenic | 45.0% | |
| GATTTAGTCCCTTTGCAGGT+AGG | - | chr1_4:12706771-12706790 | Msa0150980:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | + | chr1_4:12707061-12707080 | None:intergenic | 45.0% |
| CCTTGTTGAACCCATAAGCA+TGG | + | chr1_4:12707079-12707098 | None:intergenic | 45.0% | |
| CCATGCTTATGGGTTCAACA+AGG | - | chr1_4:12707076-12707095 | Msa0150980:intron | 45.0% | |
| GCTTATGGGTTCAACAAGGA+TGG | - | chr1_4:12707080-12707099 | Msa0150980:intron | 45.0% | |
| ! | GGGTTCAACAAGGATGGATT+AGG | - | chr1_4:12707086-12707105 | Msa0150980:intron | 45.0% |
| !! | AAGGATGGATTAGGTGCTAG+TGG | - | chr1_4:12707095-12707114 | Msa0150980:intron | 45.0% |
| !! | TTATAATAATAAATTAATCA+AGG | - | chr1_4:12706172-12706191 | Msa0150980:intron | 5.0% |
| !! | TTATAATAATAAATTAATCA+AGG | - | chr1_4:12706172-12706191 | Msa0150980:intron | 5.0% |
| TTGGACTCCCTACCTGCAAA+GGG | + | chr1_4:12706782-12706801 | None:intergenic | 50.0% | |
| CGCAGTTCGTCATTCCTTGT+TGG | + | chr1_4:12706801-12706820 | None:intergenic | 50.0% | |
| CATGGGCATCATCATCACTG+AGG | - | chr1_4:12706926-12706945 | Msa0150980:intron | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | - | chr1_4:12707002-12707021 | Msa0150980:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | - | chr1_4:12707003-12707022 | Msa0150980:intron | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | + | chr1_4:12707012-12707031 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | - | chr1_4:12707010-12707029 | Msa0150980:intron | 50.0% | |
| TTGGACTCCCTACCTGCAAA+GGG | + | chr1_4:12706782-12706801 | None:intergenic | 50.0% | |
| CGCAGTTCGTCATTCCTTGT+TGG | + | chr1_4:12706801-12706820 | None:intergenic | 50.0% | |
| CATGGGCATCATCATCACTG+AGG | - | chr1_4:12706926-12706945 | Msa0150980:intron | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | - | chr1_4:12707002-12707021 | Msa0150980:intron | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | - | chr1_4:12707003-12707022 | Msa0150980:intron | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | + | chr1_4:12707012-12707031 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | - | chr1_4:12707010-12707029 | Msa0150980:intron | 50.0% | |
| GTTGGACTCCCTACCTGCAA+AGG | + | chr1_4:12706783-12706802 | None:intergenic | 55.0% | |
| TGCAGGTAGGGAGTCCAACA+AGG | - | chr1_4:12706784-12706803 | Msa0150980:intron | 55.0% | |
| GTTGGACTCCCTACCTGCAA+AGG | + | chr1_4:12706783-12706802 | None:intergenic | 55.0% | |
| TGCAGGTAGGGAGTCCAACA+AGG | - | chr1_4:12706784-12706803 | Msa0150980:intron | 55.0% | |
| AGTGGCTCGAGCAGTGGCAA+TGG | - | chr1_4:12707113-12707132 | Msa0150980:intron | 60.0% | |
| AGTGGCTCGAGCAGTGGCAA+TGG | - | chr1_4:12707113-12707132 | Msa0150980:intron | 60.0% | |
| GGTGCTAGTGGCTCGAGCAG+TGG | - | chr1_4:12707107-12707126 | Msa0150980:intron | 65.0% | |
| GGTGCTAGTGGCTCGAGCAG+TGG | - | chr1_4:12707107-12707126 | Msa0150980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 12705635 | 12707145 | 12705635 | ID=Msa0150980;Name=Msa0150980 |
| chr1_4 | mRNA | 12705635 | 12707145 | 12705635 | ID=Msa0150980-mRNA-1;Parent=Msa0150980;Name=Msa0150980-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.5|0|0.5|2|0|121 |
| chr1_4 | exon | 12707137 | 12707145 | 12707137 | ID=Msa0150980-mRNA-1:exon:5116;Parent=Msa0150980-mRNA-1 |
| chr1_4 | exon | 12705635 | 12705991 | 12705635 | ID=Msa0150980-mRNA-1:exon:5115;Parent=Msa0150980-mRNA-1 |
| chr1_4 | CDS | 12707137 | 12707145 | 12707137 | ID=Msa0150980-mRNA-1:cds;Parent=Msa0150980-mRNA-1 |
| chr1_4 | CDS | 12705635 | 12705991 | 12705635 | ID=Msa0150980-mRNA-1:cds;Parent=Msa0150980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
