Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151420 | sp|Q9XHZ8|Y1178_ARATH | 62.903 | 372 | 90 | 2 | 1 | 372 | 1 | 324 | 8.36e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151420 | A0A072VES8 | 86.828 | 372 | 5 | 1 | 1 | 372 | 1 | 328 | 0.0 | 643 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0151420 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151420 | MtrunA17_Chr1g0159831 | 86.364 | 374 | 5 | 2 | 1 | 372 | 1 | 330 | 0.0 | 638 |
| Msa0151420 | MtrunA17_Chr3g0124921 | 63.978 | 372 | 83 | 5 | 1 | 370 | 1 | 323 | 5.50e-167 | 469 |
| Msa0151420 | MtrunA17_Chr3g0103031 | 44.920 | 374 | 158 | 3 | 1 | 372 | 1 | 328 | 6.19e-113 | 332 |
| Msa0151420 | MtrunA17_Chr5g0447111 | 39.837 | 369 | 173 | 4 | 5 | 372 | 9 | 329 | 2.80e-91 | 277 |
| Msa0151420 | MtrunA17_Chr5g0447191 | 39.572 | 187 | 109 | 2 | 184 | 368 | 3 | 187 | 2.27e-40 | 141 |
| Msa0151420 | MtrunA17_Chr4g0029841 | 30.000 | 170 | 111 | 2 | 204 | 369 | 114 | 279 | 1.81e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151420 | AT1G21780.2 | 62.903 | 372 | 90 | 2 | 1 | 372 | 1 | 324 | 8.49e-173 | 484 |
| Msa0151420 | AT1G21780.1 | 62.903 | 372 | 90 | 2 | 1 | 372 | 1 | 324 | 8.49e-173 | 484 |
| Msa0151420 | AT1G55760.1 | 42.400 | 375 | 165 | 5 | 1 | 372 | 1 | 327 | 1.65e-103 | 308 |
| Msa0151420 | AT2G39760.2 | 30.719 | 153 | 95 | 1 | 194 | 335 | 179 | 331 | 1.20e-12 | 68.9 |
| Msa0151420 | AT2G39760.4 | 30.719 | 153 | 95 | 1 | 194 | 335 | 179 | 331 | 1.25e-12 | 68.6 |
| Msa0151420 | AT2G39760.3 | 30.719 | 153 | 95 | 1 | 194 | 335 | 179 | 331 | 1.25e-12 | 68.6 |
| Msa0151420 | AT2G39760.1 | 30.719 | 153 | 95 | 1 | 194 | 335 | 179 | 331 | 2.41e-12 | 68.2 |
Find 91 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTACAAACTTGGTATT+TGG | 0.139397 | 1_4:+13531525 | Msa0151420:CDS |
| CGCAACCTCTCCTGTGTTTC+AGG | 0.153472 | 1_4:+13534831 | Msa0151420:CDS |
| CAATAAAACCCGAAGATTTC+TGG | 0.200729 | 1_4:+13534956 | Msa0151420:CDS |
| AGTGCTTACGATTTGGAAAT+AGG | 0.233751 | 1_4:+13535245 | Msa0151420:CDS |
| TTCATGAACTGTGGCATTAC+AGG | 0.284225 | 1_4:-13534269 | None:intergenic |
| TGAACCTTCGCGTGTTTCTA+AGG | 0.294946 | 1_4:+13531683 | Msa0151420:CDS |
| AATTAGAGACTCACATTTAG+AGG | 0.296472 | 1_4:-13534391 | None:intergenic |
| TTTGCATTCTTGTTTGATTT+CGG | 0.309873 | 1_4:+13535141 | Msa0151420:CDS |
| TCGTATCTTGTAGTATGATA+TGG | 0.310683 | 1_4:+13535295 | Msa0151420:three_prime_UTR |
| CTGTGCTTCCAGAAATCTTC+GGG | 0.311859 | 1_4:-13534964 | None:intergenic |
| TTCAAGAAGTGCTTACGATT+TGG | 0.314099 | 1_4:+13535238 | Msa0151420:CDS |
| ACTCGGGAAATGTTCTTGAT+AGG | 0.317843 | 1_4:+13535070 | Msa0151420:CDS |
| TTCCAAATACCAAGTTTGTA+AGG | 0.353961 | 1_4:-13531527 | None:intergenic |
| CCAGACAGATACATGTTTGT+TGG | 0.357022 | 1_4:-13531332 | None:intergenic |
| TTAGAAACACGCGAAGGTTC+AGG | 0.373550 | 1_4:-13531681 | None:intergenic |
| TGTACCATCTGCGGTTATAA+TGG | 0.375371 | 1_4:-13534782 | None:intergenic |
| CATTTGACATCTTAATAGAT+AGG | 0.375958 | 1_4:-13535404 | None:intergenic |
| AGAAGAAGAAGAAGCAGTAT+TGG | 0.384918 | 1_4:-13531742 | None:intergenic |
| ACAAACTTGGTATTTGGAAC+TGG | 0.392203 | 1_4:+13531531 | Msa0151420:CDS |
| CAATTTCCCGATTAGCTCAA+TGG | 0.401221 | 1_4:+13531462 | Msa0151420:CDS |
| TAGTACTGGATTGTATTATT+CGG | 0.409730 | 1_4:+13535353 | Msa0151420:three_prime_UTR |
| CGAAGAATGAAACGAGCAAT+AGG | 0.409761 | 1_4:-13531714 | None:intergenic |
| CCTGTGCTTCCAGAAATCTT+CGG | 0.410951 | 1_4:-13534965 | None:intergenic |
| CTTTCTTCAACTTGTGCAGC+TGG | 0.413291 | 1_4:-13535113 | None:intergenic |
| TTTACTTTGTATTATAGTAC+TGG | 0.422917 | 1_4:+13535339 | Msa0151420:three_prime_UTR |
| ATTTGTCGATAGAGAGAAAC+AGG | 0.424241 | 1_4:+13531637 | Msa0151420:CDS |
| TCTGGTCTAGTGCGTTAGGT+TGG | 0.425102 | 1_4:+13531350 | Msa0151420:five_prime_UTR |
| AAGCACAGGCTGGCATTGCT+TGG | 0.427569 | 1_4:+13534979 | Msa0151420:CDS |
| GAACCTGTGATGACTTTGTC+TGG | 0.430022 | 1_4:+13534302 | Msa0151420:CDS |
| TTGTTATTTAGTTATATAAG+TGG | 0.456748 | 1_4:+13535429 | Msa0151420:three_prime_UTR |
| TTGATAGGCTTAATGAGGCC+TGG | 0.459157 | 1_4:+13535085 | Msa0151420:CDS |
| GTTATGTCATTGTACTATAT+AGG | 0.464610 | 1_4:+13535267 | Msa0151420:three_prime_UTR |
| TGATACGAGGCCTGAAACAC+AGG | 0.468973 | 1_4:-13534841 | None:intergenic |
| AAATCAGACCCTTACAAACT+TGG | 0.470536 | 1_4:+13531518 | Msa0151420:CDS |
| ATCAGATGGCCATATGGAAC+TGG | 0.472723 | 1_4:-13534677 | None:intergenic |
| TGCAGACCGGGAGCTCATGC+TGG | 0.475204 | 1_4:+13535209 | Msa0151420:CDS |
| CTGGTCTAGTGCGTTAGGTT+GGG | 0.475684 | 1_4:+13531351 | Msa0151420:five_prime_UTR |
| AACCGCAGATGGTACACTTA+AGG | 0.477023 | 1_4:+13534789 | Msa0151420:CDS |
| CCTGTGGATACTACATTCCT+TGG | 0.490016 | 1_4:+13534325 | Msa0151420:CDS |
| GTATCTCAGAAGGGCCGTGC+AGG | 0.498716 | 1_4:-13534923 | None:intergenic |
| CCGAGTTAAGATCTTCAAGT+AGG | 0.498960 | 1_4:-13535053 | None:intergenic |
| TCTGTCTGGTCTAGTGCGTT+AGG | 0.502496 | 1_4:+13531346 | Msa0151420:five_prime_UTR |
| AGTGCCACTTCAAGATTGTA+TGG | 0.505639 | 1_4:+13534214 | Msa0151420:CDS |
| ACATCTCCAGCATGAGCTCC+CGG | 0.506500 | 1_4:-13535215 | None:intergenic |
| CAAGCATACGAGAGAGGCAT+CGG | 0.514573 | 1_4:-13534735 | None:intergenic |
| CAATGGAAAATCGACAACTT+TGG | 0.515182 | 1_4:+13531479 | Msa0151420:CDS |
| CTTGTGACATGTCTTCTATG+TGG | 0.517852 | 1_4:-13534897 | None:intergenic |
| CCAACAAACATGTATCTGTC+TGG | 0.518769 | 1_4:+13531332 | Msa0151420:five_prime_UTR |
| TCCTGAAACAAAACAAAACA+TGG | 0.521556 | 1_4:+13531421 | Msa0151420:exon |
| TCATGAACTGTGGCATTACA+GGG | 0.522664 | 1_4:-13534268 | None:intergenic |
| CCTACTTGAAGATCTTAACT+CGG | 0.524632 | 1_4:+13535053 | Msa0151420:CDS |
| CCGAAGATTTCTGGAAGCAC+AGG | 0.532000 | 1_4:+13534965 | Msa0151420:CDS |
| TTCCATACATGTATCTCAGA+AGG | 0.534119 | 1_4:-13534933 | None:intergenic |
| GTGGAGAAGCCAGTTCCATA+TGG | 0.542653 | 1_4:+13534668 | Msa0151420:CDS |
| AGAGACTCACATTTAGAGGA+TGG | 0.543830 | 1_4:-13534387 | None:intergenic |
| TGTTCTTGATAGGCTTAATG+AGG | 0.546504 | 1_4:+13535080 | Msa0151420:CDS |
| CTGAAACACAGGAGAGGTTG+CGG | 0.553064 | 1_4:-13534830 | None:intergenic |
| CAGCTGCACAAGTTGAAGAA+AGG | 0.554405 | 1_4:+13535114 | Msa0151420:CDS |
| GCCCTTCTGAGATACATGTA+TGG | 0.555410 | 1_4:+13534931 | Msa0151420:CDS |
| TCCAAATACCAAGTTTGTAA+GGG | 0.555797 | 1_4:-13531526 | None:intergenic |
| CATTTAGAGGATGGATCTTG+AGG | 0.558322 | 1_4:-13534378 | None:intergenic |
| ACAAAACATGGGAGATTCGA+AGG | 0.560639 | 1_4:+13531433 | Msa0151420:exon |
| AGTTCCATATGGCCATCTGA+TGG | 0.561027 | 1_4:+13534679 | Msa0151420:CDS |
| AGATTTCTGGAAGCACAGGC+TGG | 0.562698 | 1_4:+13534969 | Msa0151420:CDS |
| TAATGCCACAGTTCATGAAA+GGG | 0.567644 | 1_4:+13534273 | Msa0151420:CDS |
| GTAATGCCACAGTTCATGAA+AGG | 0.572992 | 1_4:+13534272 | Msa0151420:CDS |
| TGATGACTTTGTCTGGCCTG+TGG | 0.574666 | 1_4:+13534309 | Msa0151420:CDS |
| TTCACCATACAATCTTGAAG+TGG | 0.584786 | 1_4:-13534218 | None:intergenic |
| GTATGGTGAAATGCTGATAG+AGG | 0.586515 | 1_4:+13534231 | Msa0151420:CDS |
| CATCAATAATCAAGCGACCA+AGG | 0.591316 | 1_4:-13534342 | None:intergenic |
| CTTGTGCAGCTGGTACAACC+AGG | 0.594842 | 1_4:-13535103 | None:intergenic |
| CTACTTGAAGATCTTAACTC+GGG | 0.596940 | 1_4:+13535054 | Msa0151420:CDS |
| CCAAGGAATGTAGTATCCAC+AGG | 0.598731 | 1_4:-13534325 | None:intergenic |
| CTCACCATTATAACCGCAGA+TGG | 0.600207 | 1_4:+13534778 | Msa0151420:CDS |
| TGATCTCAAAGACGCATGCG+AGG | 0.608738 | 1_4:+13535026 | Msa0151420:CDS |
| TTCGCTGCTGTTGTGATACG+AGG | 0.621280 | 1_4:-13534854 | None:intergenic |
| AGGCCAGACAAAGTCATCAC+AGG | 0.625083 | 1_4:-13534305 | None:intergenic |
| TCTGATTTCTTGTAAGAACA+AGG | 0.625303 | 1_4:-13531503 | None:intergenic |
| ATGGACTTAACTTGAGTGAA+CGG | 0.627013 | 1_4:+13531260 | None:intergenic |
| CTTCGTCAAGCATACGAGAG+AGG | 0.638028 | 1_4:-13534741 | None:intergenic |
| TCCATACATGTATCTCAGAA+GGG | 0.640688 | 1_4:-13534932 | None:intergenic |
| AGCCTTAAGTGTACCATCTG+CGG | 0.641897 | 1_4:-13534791 | None:intergenic |
| CCTGAAACAAAACAAAACAT+GGG | 0.643252 | 1_4:+13531422 | Msa0151420:exon |
| AGAATGAAACGAGCAATAGG+AGG | 0.644603 | 1_4:-13531711 | None:intergenic |
| AAGCACCCTTTCATGAACTG+TGG | 0.662943 | 1_4:-13534278 | None:intergenic |
| CATCTGCGGTTATAATGGTG+AGG | 0.675837 | 1_4:-13534777 | None:intergenic |
| GCAGCTAATAAATACGACAT+CGG | 0.699343 | 1_4:+13535003 | Msa0151420:CDS |
| GGAAATGTAAAATTTGCGAG+AGG | 0.705844 | 1_4:-13531766 | None:intergenic |
| CGAGGCCTGAAACACAGGAG+AGG | 0.710966 | 1_4:-13534836 | None:intergenic |
| CATGTCACAAGAATCCTGCA+CGG | 0.721067 | 1_4:+13534909 | Msa0151420:CDS |
| TGTTCCTTAGAAACACGCGA+AGG | 0.748205 | 1_4:-13531687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATTATATGTCAATT+TGG | + | chr1_4:13532235-13532254 | Msa0151420:intron | 10.0% |
| !!! | ATTATACTATGTTGAATTTT+TGG | + | chr1_4:13531582-13531601 | Msa0151420:intron | 15.0% |
| !!! | TTATACTATGTTGAATTTTT+GGG | + | chr1_4:13531583-13531602 | Msa0151420:intron | 15.0% |
| !! | AATTCTACTAATAAAATTCA+AGG | - | chr1_4:13532265-13532284 | None:intergenic | 15.0% |
| !!! | CTTTTGTTAATAAAAAGTTT+AGG | + | chr1_4:13532294-13532313 | Msa0151420:intron | 15.0% |
| !! | ATAAAAAAAACTACAATGTT+GGG | - | chr1_4:13533947-13533966 | None:intergenic | 15.0% |
| !!! | ACTTATTTTTTGCAAATTTA+AGG | - | chr1_4:13534177-13534196 | None:intergenic | 15.0% |
| !!! | TTGTTATTTAGTTATATAAG+TGG | + | chr1_4:13535429-13535448 | Msa0151420:three_prime_UTR | 15.0% |
| !! | CTGATATTATAATCATCAAA+CGG | - | chr1_4:13532097-13532116 | None:intergenic | 20.0% |
| !!! | ACTTGTGATTTTCAATTTAT+GGG | + | chr1_4:13532867-13532886 | Msa0151420:intron | 20.0% |
| !!! | ATAAATTTTGAGAACTAGAT+TGG | + | chr1_4:13532906-13532925 | Msa0151420:intron | 20.0% |
| !! | GTAAGATCTAAACAATATTA+TGG | - | chr1_4:13533565-13533584 | None:intergenic | 20.0% |
| !! | GCTATATTTAAATAGAGAAT+TGG | + | chr1_4:13533870-13533889 | Msa0151420:intron | 20.0% |
| !! | GATAAAAAAAACTACAATGT+TGG | - | chr1_4:13533948-13533967 | None:intergenic | 20.0% |
| !! | AATTTAGTAAACAAAAGAGA+GGG | - | chr1_4:13534107-13534126 | None:intergenic | 20.0% |
| !! | AAATTTAGTAAACAAAAGAG+AGG | - | chr1_4:13534108-13534127 | None:intergenic | 20.0% |
| !! | TGATGTAACTAGATATAATA+TGG | + | chr1_4:13534450-13534469 | Msa0151420:intron | 20.0% |
| !! | ACAAATAGATAGTTATAGAA+CGG | - | chr1_4:13534503-13534522 | None:intergenic | 20.0% |
| !! | TTTACTTTGTATTATAGTAC+TGG | + | chr1_4:13535339-13535358 | Msa0151420:three_prime_UTR | 20.0% |
| !!! | TTTACTATGTTGTTGTTTTC+AGG | + | chr1_4:13531613-13531632 | Msa0151420:intron | 25.0% |
| !!! | TGAATCACTATTTTGATCAT+TGG | + | chr1_4:13531873-13531892 | Msa0151420:intron | 25.0% |
| !!! | GAATCACTATTTTGATCATT+GGG | + | chr1_4:13531874-13531893 | Msa0151420:intron | 25.0% |
| !!! | AATCACTATTTTGATCATTG+GGG | + | chr1_4:13531875-13531894 | Msa0151420:intron | 25.0% |
| !! | TTTGAAATTTCGATACATTG+AGG | + | chr1_4:13532022-13532041 | Msa0151420:intron | 25.0% |
| ! | TTGAAATTTCGATACATTGA+GGG | + | chr1_4:13532023-13532042 | Msa0151420:intron | 25.0% |
| ! | ATTATAATATCAGTTCGTCT+TGG | + | chr1_4:13532104-13532123 | Msa0151420:intron | 25.0% |
| ! | AATAAAAAGTTTAGGTGAGT+TGG | + | chr1_4:13532302-13532321 | Msa0151420:intron | 25.0% |
| ! | ATAAAAAGTTTAGGTGAGTT+GGG | + | chr1_4:13532303-13532322 | Msa0151420:intron | 25.0% |
| ! | TGTACTGCAATCTTATATAT+AGG | + | chr1_4:13532622-13532641 | Msa0151420:intron | 25.0% |
| ! | ATTCAGTAAACTATCATTAG+TGG | - | chr1_4:13532816-13532835 | None:intergenic | 25.0% |
| ! | AATGATAGTTTACTGAATGA+AGG | + | chr1_4:13532818-13532837 | Msa0151420:intron | 25.0% |
| !!! | TGAATGAAGGTTTTTTATGA+CGG | + | chr1_4:13532831-13532850 | Msa0151420:intron | 25.0% |
| !! | GACTTGTGATTTTCAATTTA+TGG | + | chr1_4:13532866-13532885 | Msa0151420:intron | 25.0% |
| ! | AAAAGGAAAGACAATAAAAC+AGG | - | chr1_4:13532954-13532973 | None:intergenic | 25.0% |
| ! | AGAGTAAAGTGTGATAATTA+AGG | + | chr1_4:13533084-13533103 | Msa0151420:intron | 25.0% |
| ! | GAGTAAAGTGTGATAATTAA+GGG | + | chr1_4:13533085-13533104 | Msa0151420:intron | 25.0% |
| ! | TAATTAAGGGTTCTTATTGT+AGG | + | chr1_4:13533098-13533117 | Msa0151420:intron | 25.0% |
| ! | AATTAAGGGTTCTTATTGTA+GGG | + | chr1_4:13533099-13533118 | Msa0151420:intron | 25.0% |
| !!! | TTTAGATTATTTTTCCCCAT+TGG | + | chr1_4:13533133-13533152 | Msa0151420:intron | 25.0% |
| !! | TATTGAATGGAATGCATTTT+AGG | + | chr1_4:13533306-13533325 | Msa0151420:intron | 25.0% |
| ! | GATTGTTAACATACAACAAT+AGG | - | chr1_4:13533351-13533370 | None:intergenic | 25.0% |
| ! | GTATTACAAAAAAATGCTTC+TGG | + | chr1_4:13533446-13533465 | Msa0151420:intron | 25.0% |
| ! | ATAAATTAAGCTGCACATAA+AGG | + | chr1_4:13533632-13533651 | Msa0151420:intron | 25.0% |
| ! | TAAATTAAGCTGCACATAAA+GGG | + | chr1_4:13533633-13533652 | Msa0151420:intron | 25.0% |
| ! | TATATCTATAAATCCAAGAC+AGG | - | chr1_4:13534070-13534089 | None:intergenic | 25.0% |
| !!! | ATTAGCTCTGTATTTATTGT+TGG | - | chr1_4:13534139-13534158 | None:intergenic | 25.0% |
| !!! | ATTGTTTTGAGTTACTTAAC+AGG | + | chr1_4:13534538-13534557 | Msa0151420:intron | 25.0% |
| !! | TTTGCATTCTTGTTTGATTT+CGG | + | chr1_4:13535141-13535160 | Msa0151420:CDS | 25.0% |
| ! | GTTATGTCATTGTACTATAT+AGG | + | chr1_4:13535267-13535286 | Msa0151420:three_prime_UTR | 25.0% |
| !! | TAGTACTGGATTGTATTATT+CGG | + | chr1_4:13535353-13535372 | Msa0151420:three_prime_UTR | 25.0% |
| ! | CATTTGACATCTTAATAGAT+AGG | - | chr1_4:13535407-13535426 | None:intergenic | 25.0% |
| ! | GTCAAAAGTTTTCAATAAGC+TGG | - | chr1_4:13531292-13531311 | None:intergenic | 30.0% |
| TCCTGAAACAAAACAAAACA+TGG | + | chr1_4:13531421-13531440 | Msa0151420:exon | 30.0% | |
| CCTGAAACAAAACAAAACAT+GGG | + | chr1_4:13531422-13531441 | Msa0151420:exon | 30.0% | |
| TCTGATTTCTTGTAAGAACA+AGG | - | chr1_4:13531506-13531525 | None:intergenic | 30.0% | |
| TCCAAATACCAAGTTTGTAA+GGG | - | chr1_4:13531529-13531548 | None:intergenic | 30.0% | |
| TTCCAAATACCAAGTTTGTA+AGG | - | chr1_4:13531530-13531549 | None:intergenic | 30.0% | |
| AAGAGATAACATACTAACCA+GGG | - | chr1_4:13531791-13531810 | None:intergenic | 30.0% | |
| ! | CAAACGGATAATAGTCATTT+TGG | - | chr1_4:13532081-13532100 | None:intergenic | 30.0% |
| CTAACTCATCTTTACAAAAC+CGG | - | chr1_4:13532208-13532227 | None:intergenic | 30.0% | |
| TACTAATAGCCAATAAAGGT+TGG | - | chr1_4:13532583-13532602 | None:intergenic | 30.0% | |
| ! | AACCTTTATTGGCTATTAGT+AGG | + | chr1_4:13532582-13532601 | Msa0151420:intron | 30.0% |
| ATCCTACTAATAGCCAATAA+AGG | - | chr1_4:13532587-13532606 | None:intergenic | 30.0% | |
| TTAGTAGGATTATTAGCAGT+AGG | + | chr1_4:13532597-13532616 | Msa0151420:intron | 30.0% | |
| TAGTAGGATTATTAGCAGTA+GGG | + | chr1_4:13532598-13532617 | Msa0151420:intron | 30.0% | |
| TGCAATCTTATATATAGGAC+CGG | + | chr1_4:13532627-13532646 | Msa0151420:intron | 30.0% | |
| AAACTTCTTAATACTACCTC+CGG | - | chr1_4:13532649-13532668 | None:intergenic | 30.0% | |
| GAGGTAGTATTAAGAAGTTT+AGG | + | chr1_4:13532649-13532668 | Msa0151420:intron | 30.0% | |
| ATTAAGAAGTTTAGGTGAGT+TGG | + | chr1_4:13532657-13532676 | Msa0151420:intron | 30.0% | |
| TTAAGAAGTTTAGGTGAGTT+GGG | + | chr1_4:13532658-13532677 | Msa0151420:intron | 30.0% | |
| ! | ATTCATATACTCAGTTGGTA+AGG | - | chr1_4:13532789-13532808 | None:intergenic | 30.0% |
| AAGTCTTAGTATCAAGCAAA+AGG | - | chr1_4:13532971-13532990 | None:intergenic | 30.0% | |
| AACATTATCCCTTTCAAACA+CGG | - | chr1_4:13533034-13533053 | None:intergenic | 30.0% | |
| TGTTTGAAAGGGATAATGTT+TGG | + | chr1_4:13533034-13533053 | Msa0151420:intron | 30.0% | |
| GTTTGAAAGGGATAATGTTT+GGG | + | chr1_4:13533035-13533054 | Msa0151420:intron | 30.0% | |
| TTTGAAAGGGATAATGTTTG+GGG | + | chr1_4:13533036-13533055 | Msa0151420:intron | 30.0% | |
| ATTTCCTTAGTATCGTAGTA+AGG | - | chr1_4:13533168-13533187 | None:intergenic | 30.0% | |
| TACTAAGGAAATACTCAAGA+AGG | + | chr1_4:13533176-13533195 | Msa0151420:intron | 30.0% | |
| ACTAAGGAAATACTCAAGAA+GGG | + | chr1_4:13533177-13533196 | Msa0151420:intron | 30.0% | |
| TGTGCAGCTTAATTTATGTA+CGG | - | chr1_4:13533629-13533648 | None:intergenic | 30.0% | |
| ACCAAAAAAAGAAGTTTCTG+CGG | + | chr1_4:13533968-13533987 | Msa0151420:intron | 30.0% | |
| TCACTAGATAGATCTACAAT+TGG | - | chr1_4:13534047-13534066 | None:intergenic | 30.0% | |
| AATTAGAGACTCACATTTAG+AGG | - | chr1_4:13534394-13534413 | None:intergenic | 30.0% | |
| ACAATTTAACACTAGTTCAG+AGG | - | chr1_4:13534608-13534627 | None:intergenic | 30.0% | |
| TCGTATCTTGTAGTATGATA+TGG | + | chr1_4:13535295-13535314 | Msa0151420:three_prime_UTR | 30.0% | |
| !!! | CCCATGTTTTGTTTTGTTTC+AGG | - | chr1_4:13531425-13531444 | None:intergenic | 35.0% |
| ! | GATTTTCCATTGAGCTAATC+GGG | - | chr1_4:13531471-13531490 | None:intergenic | 35.0% |
| ! | CGATTTTCCATTGAGCTAAT+CGG | - | chr1_4:13531472-13531491 | None:intergenic | 35.0% |
| CAATGGAAAATCGACAACTT+TGG | + | chr1_4:13531479-13531498 | Msa0151420:CDS | 35.0% | |
| AAATCAGACCCTTACAAACT+TGG | + | chr1_4:13531518-13531537 | Msa0151420:CDS | 35.0% | |
| ACCCTTACAAACTTGGTATT+TGG | + | chr1_4:13531525-13531544 | Msa0151420:CDS | 35.0% | |
| ! | ACAAACTTGGTATTTGGAAC+TGG | + | chr1_4:13531531-13531550 | Msa0151420:CDS | 35.0% |
| ATTTGTCGATAGAGAGAAAC+AGG | + | chr1_4:13531637-13531656 | Msa0151420:CDS | 35.0% | |
| AGAAGAAGAAGAAGCAGTAT+TGG | - | chr1_4:13531745-13531764 | None:intergenic | 35.0% | |
| GGAAATGTAAAATTTGCGAG+AGG | - | chr1_4:13531769-13531788 | None:intergenic | 35.0% | |
| AGAGATAACATACTAACCAG+GGG | - | chr1_4:13531790-13531809 | None:intergenic | 35.0% | |
| GAAGAGATAACATACTAACC+AGG | - | chr1_4:13531792-13531811 | None:intergenic | 35.0% | |
| ! | AGTCAAAAAAGTGTGACACA+GGG | - | chr1_4:13531977-13531996 | None:intergenic | 35.0% |
| ! | TAGTCAAAAAAGTGTGACAC+AGG | - | chr1_4:13531978-13531997 | None:intergenic | 35.0% |
| ACACTATCTTTCAACGATGT+AGG | - | chr1_4:13532141-13532160 | None:intergenic | 35.0% | |
| ATCTTTCACCTTACAAAAGC+CGG | + | chr1_4:13532186-13532205 | Msa0151420:intron | 35.0% | |
| !! | TTACAAAACCGGCTTTTGTA+AGG | - | chr1_4:13532197-13532216 | None:intergenic | 35.0% |
| !! | CGGTTTTGTAAAGATGAGTT+AGG | + | chr1_4:13532206-13532225 | Msa0151420:intron | 35.0% |
| AATTCCTTACCAACTGAGTT+GGG | + | chr1_4:13532427-13532446 | Msa0151420:intron | 35.0% | |
| AATCTTATATATAGGACCGG+AGG | + | chr1_4:13532630-13532649 | Msa0151420:intron | 35.0% | |
| GAGGAATTCATATACTCAGT+TGG | - | chr1_4:13532794-13532813 | None:intergenic | 35.0% | |
| CAGTAAACTATCATTAGTGG+AGG | - | chr1_4:13532813-13532832 | None:intergenic | 35.0% | |
| TTGAAAGGGATAATGTTTGG+GGG | + | chr1_4:13533037-13533056 | Msa0151420:intron | 35.0% | |
| TTACTCTTTACTCACTTCAG+AGG | - | chr1_4:13533071-13533090 | None:intergenic | 35.0% | |
| TAAGGACTAAAGAACCAATG+GGG | - | chr1_4:13533150-13533169 | None:intergenic | 35.0% | |
| GTAAGGACTAAAGAACCAAT+GGG | - | chr1_4:13533151-13533170 | None:intergenic | 35.0% | |
| AGTAAGGACTAAAGAACCAA+TGG | - | chr1_4:13533152-13533171 | None:intergenic | 35.0% | |
| TAGTCCTTACTACGATACTA+AGG | + | chr1_4:13533161-13533180 | Msa0151420:intron | 35.0% | |
| !! | TCCAGAAGAGACTGATTTTT+GGG | + | chr1_4:13533202-13533221 | Msa0151420:intron | 35.0% |
| TCATACCTCTTAAACTGTTG+CGG | + | chr1_4:13533269-13533288 | Msa0151420:intron | 35.0% | |
| ! | ACAATCTAAATGATGACGTC+TGG | + | chr1_4:13533365-13533384 | Msa0151420:intron | 35.0% |
| ! | TGATGACGTCTGGTAAATTA+CGG | + | chr1_4:13533375-13533394 | Msa0151420:intron | 35.0% |
| CAAAAAAATGCTTCTGGATC+TGG | + | chr1_4:13533452-13533471 | Msa0151420:intron | 35.0% | |
| CAAGGGATACAATAATAAGC+AGG | - | chr1_4:13533522-13533541 | None:intergenic | 35.0% | |
| AACCTCTTGTGTGAAAACAA+GGG | - | chr1_4:13533731-13533750 | None:intergenic | 35.0% | |
| TGCAGCTTAATTTATGTACG+GGG | - | chr1_4:13533821-13533840 | None:intergenic | 35.0% | |
| GTGCAGCTTAATTTATGTAC+GGG | - | chr1_4:13533628-13533647 | None:intergenic | 35.0% | |
| !! | ACTTTGAGATTATTAGCTCG+TGG | - | chr1_4:13533911-13533930 | None:intergenic | 35.0% |
| !!! | ACCGCAGAAACTTCTTTTTT+TGG | - | chr1_4:13533972-13533991 | None:intergenic | 35.0% |
| !! | CACTTTGAAGTCTAAACAAG+CGG | - | chr1_4:13534009-13534028 | None:intergenic | 35.0% |
| TTCACCATACAATCTTGAAG+TGG | - | chr1_4:13534221-13534240 | None:intergenic | 35.0% | |
| TAATGCCACAGTTCATGAAA+GGG | + | chr1_4:13534273-13534292 | Msa0151420:CDS | 35.0% | |
| !!! | TTTTTTTCCAACTGAGAGTC+AGG | + | chr1_4:13534645-13534664 | Msa0151420:intron | 35.0% |
| !!! | TTTTTTCCAACTGAGAGTCA+GGG | + | chr1_4:13534646-13534665 | Msa0151420:intron | 35.0% |
| TCCATACATGTATCTCAGAA+GGG | - | chr1_4:13534935-13534954 | None:intergenic | 35.0% | |
| TTCCATACATGTATCTCAGA+AGG | - | chr1_4:13534936-13534955 | None:intergenic | 35.0% | |
| CAATAAAACCCGAAGATTTC+TGG | + | chr1_4:13534956-13534975 | Msa0151420:CDS | 35.0% | |
| GCAGCTAATAAATACGACAT+CGG | + | chr1_4:13535003-13535022 | Msa0151420:CDS | 35.0% | |
| CCTACTTGAAGATCTTAACT+CGG | + | chr1_4:13535053-13535072 | Msa0151420:CDS | 35.0% | |
| CTACTTGAAGATCTTAACTC+GGG | + | chr1_4:13535054-13535073 | Msa0151420:CDS | 35.0% | |
| TGTTCTTGATAGGCTTAATG+AGG | + | chr1_4:13535080-13535099 | Msa0151420:CDS | 35.0% | |
| !! | TTCAAGAAGTGCTTACGATT+TGG | + | chr1_4:13535238-13535257 | Msa0151420:CDS | 35.0% |
| ! | AGTGCTTACGATTTGGAAAT+AGG | + | chr1_4:13535245-13535264 | Msa0151420:CDS | 35.0% |
| !!! | AGTGGCAAGTTGATTTTGTT+TGG | + | chr1_4:13535447-13535466 | Msa0151420:three_prime_UTR | 35.0% |
| CCAGACAGATACATGTTTGT+TGG | - | chr1_4:13531335-13531354 | None:intergenic | 40.0% | |
| CCAACAAACATGTATCTGTC+TGG | + | chr1_4:13531332-13531351 | Msa0151420:five_prime_UTR | 40.0% | |
| ACAAAACATGGGAGATTCGA+AGG | + | chr1_4:13531433-13531452 | Msa0151420:exon | 40.0% | |
| ! | CAATTTCCCGATTAGCTCAA+TGG | + | chr1_4:13531462-13531481 | Msa0151420:CDS | 40.0% |
| AGAATGAAACGAGCAATAGG+AGG | - | chr1_4:13531714-13531733 | None:intergenic | 40.0% | |
| CGAAGAATGAAACGAGCAAT+AGG | - | chr1_4:13531717-13531736 | None:intergenic | 40.0% | |
| ! | CGCAAATTTTACATTTCCCC+TGG | + | chr1_4:13531771-13531790 | Msa0151420:CDS | 40.0% |
| CATTGGGGTAATAGTCAGTT+TGG | + | chr1_4:13531890-13531909 | Msa0151420:intron | 40.0% | |
| GATGCATTGAAGAGCTATTG+TGG | - | chr1_4:13531938-13531957 | None:intergenic | 40.0% | |
| GATACATTGAGGGACTATTG+TGG | + | chr1_4:13532033-13532052 | Msa0151420:intron | 40.0% | |
| ! | TGGCTACTTGTTACACATTG+AGG | + | chr1_4:13532053-13532072 | Msa0151420:intron | 40.0% |
| TCTTTCAACGATGTAGGACT+TGG | - | chr1_4:13532135-13532154 | None:intergenic | 40.0% | |
| ! | TTCATATTCCACAAGAGCGT+GGG | - | chr1_4:13532404-13532423 | None:intergenic | 40.0% |
| ATTCATATTCCACAAGAGCG+TGG | - | chr1_4:13532405-13532424 | None:intergenic | 40.0% | |
| !! | CAACTCAGTTGGTAAGGAAT+TGG | - | chr1_4:13532428-13532447 | None:intergenic | 40.0% |
| CAATTCCTTACCAACTGAGT+TGG | + | chr1_4:13532426-13532445 | Msa0151420:intron | 40.0% | |
| AACGTGCGAATCTATTTGGT+GGG | - | chr1_4:13532501-13532520 | None:intergenic | 40.0% | |
| TGTCAACGTGCGAATCTATT+TGG | - | chr1_4:13532505-13532524 | None:intergenic | 40.0% | |
| AGTTGGACTCATATACGCAA+GGG | - | chr1_4:13532546-13532565 | None:intergenic | 40.0% | |
| ! | TTTAGGTGAGTTGGGTTCTA+GGG | + | chr1_4:13532666-13532685 | Msa0151420:intron | 40.0% |
| ! | GAATCTCTTTGATGGGTGAT+CGG | - | chr1_4:13532713-13532732 | None:intergenic | 40.0% |
| CGCATGAGAATCTCTTTGAT+GGG | - | chr1_4:13532720-13532739 | None:intergenic | 40.0% | |
| CCATCAAAGAGATTCTCATG+CGG | + | chr1_4:13532718-13532737 | Msa0151420:intron | 40.0% | |
| CATCAAAGAGATTCTCATGC+GGG | + | chr1_4:13532719-13532738 | Msa0151420:intron | 40.0% | |
| !! | ATACTCAGTTGGTAAGGAGT+TGG | - | chr1_4:13532783-13532802 | None:intergenic | 40.0% |
| ATCGAGAGTTAGAGGAAATG+AGG | - | chr1_4:13533011-13533030 | None:intergenic | 40.0% | |
| TGAAAGGGATAATGTTTGGG+GGG | + | chr1_4:13533038-13533057 | Msa0151420:intron | 40.0% | |
| !! | GTCCAGAAGAGACTGATTTT+TGG | + | chr1_4:13533201-13533220 | Msa0151420:intron | 40.0% |
| ACCCAAAAATCAGTCTCTTC+TGG | - | chr1_4:13533206-13533225 | None:intergenic | 40.0% | |
| !! | AGAAGAGACTGATTTTTGGG+TGG | + | chr1_4:13533205-13533224 | Msa0151420:intron | 40.0% |
| !!! | GAAGAGACTGATTTTTGGGT+GGG | + | chr1_4:13533206-13533225 | Msa0151420:intron | 40.0% |
| !!! | AAGAGACTGATTTTTGGGTG+GGG | + | chr1_4:13533207-13533226 | Msa0151420:intron | 40.0% |
| !! | GGGAAAAGAGAGGTATTGAA+TGG | + | chr1_4:13533293-13533312 | Msa0151420:intron | 40.0% |
| GATGACGTCTGGTAAATTAC+GGG | + | chr1_4:13533376-13533395 | Msa0151420:intron | 40.0% | |
| CAACACTCAAGTTTCGTATC+AGG | + | chr1_4:13533584-13533603 | Msa0151420:intron | 40.0% | |
| TTTCGTATCAGGAAACATGC+AGG | + | chr1_4:13533595-13533614 | Msa0151420:intron | 40.0% | |
| AAGGCTATACACCAAATGGT+GGG | - | chr1_4:13533707-13533726 | None:intergenic | 40.0% | |
| TAAGGCTATACACCAAATGG+TGG | - | chr1_4:13533708-13533727 | None:intergenic | 40.0% | |
| CTTGTGTGAAAACAAGGGTA+AGG | - | chr1_4:13533726-13533745 | None:intergenic | 40.0% | |
| !!! | TACCCTTGTTTTCACACAAG+AGG | + | chr1_4:13533726-13533745 | Msa0151420:intron | 40.0% |
| CAACCTCTTGTGTGAAAACA+AGG | - | chr1_4:13533732-13533751 | None:intergenic | 40.0% | |
| ATCTATCTAGTGACCTGTCT+TGG | + | chr1_4:13534054-13534073 | Msa0151420:intron | 40.0% | |
| !! | AGTGCCACTTCAAGATTGTA+TGG | + | chr1_4:13534214-13534233 | Msa0151420:CDS | 40.0% |
| GTATGGTGAAATGCTGATAG+AGG | + | chr1_4:13534231-13534250 | Msa0151420:CDS | 40.0% | |
| TCATGAACTGTGGCATTACA+GGG | - | chr1_4:13534271-13534290 | None:intergenic | 40.0% | |
| TTCATGAACTGTGGCATTAC+AGG | - | chr1_4:13534272-13534291 | None:intergenic | 40.0% | |
| GTAATGCCACAGTTCATGAA+AGG | + | chr1_4:13534272-13534291 | Msa0151420:CDS | 40.0% | |
| CATCAATAATCAAGCGACCA+AGG | - | chr1_4:13534345-13534364 | None:intergenic | 40.0% | |
| CATTTAGAGGATGGATCTTG+AGG | - | chr1_4:13534381-13534400 | None:intergenic | 40.0% | |
| AGAGACTCACATTTAGAGGA+TGG | - | chr1_4:13534390-13534409 | None:intergenic | 40.0% | |
| ! | TTTTCCATCAGATGGCCATA+TGG | - | chr1_4:13534686-13534705 | None:intergenic | 40.0% |
| ! | GAATGCAGTTTTCCATCAGA+TGG | - | chr1_4:13534694-13534713 | None:intergenic | 40.0% |
| TGTACCATCTGCGGTTATAA+TGG | - | chr1_4:13534785-13534804 | None:intergenic | 40.0% | |
| CTTGTGACATGTCTTCTATG+TGG | - | chr1_4:13534900-13534919 | None:intergenic | 40.0% | |
| CCGAGTTAAGATCTTCAAGT+AGG | - | chr1_4:13535056-13535075 | None:intergenic | 40.0% | |
| ACTCGGGAAATGTTCTTGAT+AGG | + | chr1_4:13535070-13535089 | Msa0151420:CDS | 40.0% | |
| !!! | TGTTTTTTCGTCATGCAGAC+CGG | + | chr1_4:13535196-13535215 | Msa0151420:CDS | 40.0% |
| TTAGAAACACGCGAAGGTTC+AGG | - | chr1_4:13531684-13531703 | None:intergenic | 45.0% | |
| ! | TGAACCTTCGCGTGTTTCTA+AGG | + | chr1_4:13531683-13531702 | Msa0151420:CDS | 45.0% |
| TGTTCCTTAGAAACACGCGA+AGG | - | chr1_4:13531690-13531709 | None:intergenic | 45.0% | |
| TGGTCCGTGAATGTGTAACA+AGG | + | chr1_4:13531910-13531929 | Msa0151420:intron | 45.0% | |
| GGCTCCTTGTTACACATTCA+CGG | - | chr1_4:13531917-13531936 | None:intergenic | 45.0% | |
| ! | AGTTTAGGTGAGTTGGGTTC+CGG | + | chr1_4:13532309-13532328 | Msa0151420:intron | 45.0% |
| CGCGTGTGAATCTCTTTGTT+GGG | - | chr1_4:13532365-13532384 | None:intergenic | 45.0% | |
| CCAACAAAGAGATTCACACG+CGG | + | chr1_4:13532363-13532382 | Msa0151420:intron | 45.0% | |
| CAACAAAGAGATTCACACGC+GGG | + | chr1_4:13532364-13532383 | Msa0151420:intron | 45.0% | |
| CAACGTGCGAATCTATTTGG+TGG | - | chr1_4:13532502-13532521 | None:intergenic | 45.0% | |
| AGATTCGCACGTTGACAACA+CGG | + | chr1_4:13532508-13532527 | Msa0151420:intron | 45.0% | |
| GAGTTGGACTCATATACGCA+AGG | - | chr1_4:13532547-13532566 | None:intergenic | 45.0% | |
| ! | AAAGGTTGGCTCAGTTGGTA+AGG | - | chr1_4:13532569-13532588 | None:intergenic | 45.0% |
| ! | CCAATAAAGGTTGGCTCAGT+TGG | - | chr1_4:13532574-13532593 | None:intergenic | 45.0% |
| CCAACTGAGCCAACCTTTAT+TGG | + | chr1_4:13532571-13532590 | Msa0151420:intron | 45.0% | |
| ! | GTTTAGGTGAGTTGGGTTCT+AGG | + | chr1_4:13532665-13532684 | Msa0151420:intron | 45.0% |
| !! | TTGGGTTCTAGGGCTAACTA+GGG | + | chr1_4:13532676-13532695 | Msa0151420:intron | 45.0% |
| TAGGGCTAACTAGGGGTTAA+GGG | + | chr1_4:13532684-13532703 | Msa0151420:intron | 45.0% | |
| CCGCATGAGAATCTCTTTGA+TGG | - | chr1_4:13532721-13532740 | None:intergenic | 45.0% | |
| AAACACGGATCGAGAGTTAG+AGG | - | chr1_4:13533019-13533038 | None:intergenic | 45.0% | |
| ACTCTCGATCCGTGTTTGAA+AGG | + | chr1_4:13533022-13533041 | Msa0151420:intron | 45.0% | |
| CTCTCGATCCGTGTTTGAAA+GGG | + | chr1_4:13533023-13533042 | Msa0151420:intron | 45.0% | |
| TACCTCTTAAACTGTTGCGG+AGG | + | chr1_4:13533272-13533291 | Msa0151420:intron | 45.0% | |
| ACCTCTTAAACTGTTGCGGA+GGG | + | chr1_4:13533273-13533292 | Msa0151420:intron | 45.0% | |
| AGGATTCGTCAGATGATGCA+GGG | - | chr1_4:13533502-13533521 | None:intergenic | 45.0% | |
| ATTATTGTATCCCTTGCCCC+AGG | + | chr1_4:13533526-13533545 | Msa0151420:intron | 45.0% | |
| GGGTAAGGCTATACACCAAA+TGG | - | chr1_4:13533711-13533730 | None:intergenic | 45.0% | |
| ! | TCACACAAGAGGTTGTTTCC+AGG | + | chr1_4:13533737-13533756 | Msa0151420:intron | 45.0% |
| TCACGTGACTGAAAGGTTAC+GGG | - | chr1_4:13533770-13533789 | None:intergenic | 45.0% | |
| GTCACGTGACTGAAAGGTTA+CGG | - | chr1_4:13533771-13533790 | None:intergenic | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr1_4:13533777-13533796 | None:intergenic | 45.0% | |
| ACAACTTTACTGTTGCGCCA+AGG | + | chr1_4:13533792-13533811 | Msa0151420:intron | 45.0% | |
| ATTTATGTACGGGGAAGCCT+TGG | - | chr1_4:13533812-13533831 | None:intergenic | 45.0% | |
| GTTTCTGCGGTAAACTCACA+TGG | + | chr1_4:13533981-13534000 | Msa0151420:intron | 45.0% | |
| AAGCACCCTTTCATGAACTG+TGG | - | chr1_4:13534281-13534300 | None:intergenic | 45.0% | |
| GAACCTGTGATGACTTTGTC+TGG | + | chr1_4:13534302-13534321 | Msa0151420:CDS | 45.0% | |
| CCAAGGAATGTAGTATCCAC+AGG | - | chr1_4:13534328-13534347 | None:intergenic | 45.0% | |
| CCTGTGGATACTACATTCCT+TGG | + | chr1_4:13534325-13534344 | Msa0151420:CDS | 45.0% | |
| ATCAGATGGCCATATGGAAC+TGG | - | chr1_4:13534680-13534699 | None:intergenic | 45.0% | |
| AGTTCCATATGGCCATCTGA+TGG | + | chr1_4:13534679-13534698 | Msa0151420:CDS | 45.0% | |
| CATCTGCGGTTATAATGGTG+AGG | - | chr1_4:13534780-13534799 | None:intergenic | 45.0% | |
| CTCACCATTATAACCGCAGA+TGG | + | chr1_4:13534778-13534797 | Msa0151420:CDS | 45.0% | |
| AACCGCAGATGGTACACTTA+AGG | + | chr1_4:13534789-13534808 | Msa0151420:CDS | 45.0% | |
| AGCCTTAAGTGTACCATCTG+CGG | - | chr1_4:13534794-13534813 | None:intergenic | 45.0% | |
| CATGTCACAAGAATCCTGCA+CGG | + | chr1_4:13534909-13534928 | Msa0151420:CDS | 45.0% | |
| !! | GCCCTTCTGAGATACATGTA+TGG | + | chr1_4:13534931-13534950 | Msa0151420:CDS | 45.0% |
| CTGTGCTTCCAGAAATCTTC+GGG | - | chr1_4:13534967-13534986 | None:intergenic | 45.0% | |
| CCTGTGCTTCCAGAAATCTT+CGG | - | chr1_4:13534968-13534987 | None:intergenic | 45.0% | |
| TTGATAGGCTTAATGAGGCC+TGG | + | chr1_4:13535085-13535104 | Msa0151420:CDS | 45.0% | |
| CTTTCTTCAACTTGTGCAGC+TGG | - | chr1_4:13535116-13535135 | None:intergenic | 45.0% | |
| ! | CAGCTGCACAAGTTGAAGAA+AGG | + | chr1_4:13535114-13535133 | Msa0151420:CDS | 45.0% |
| !!! | GTTTTTTCGTCATGCAGACC+GGG | + | chr1_4:13535197-13535216 | Msa0151420:CDS | 45.0% |
| TCTGTCTGGTCTAGTGCGTT+AGG | + | chr1_4:13531346-13531365 | Msa0151420:five_prime_UTR | 50.0% | |
| TCTGGTCTAGTGCGTTAGGT+TGG | + | chr1_4:13531350-13531369 | Msa0151420:five_prime_UTR | 50.0% | |
| CTGGTCTAGTGCGTTAGGTT+GGG | + | chr1_4:13531351-13531370 | Msa0151420:five_prime_UTR | 50.0% | |
| ! | GTTTAGGTGAGTTGGGTTCC+GGG | + | chr1_4:13532310-13532329 | Msa0151420:intron | 50.0% |
| ! | TTTAGGTGAGTTGGGTTCCG+GGG | + | chr1_4:13532311-13532330 | Msa0151420:intron | 50.0% |
| CCGCGTGTGAATCTCTTTGT+TGG | - | chr1_4:13532366-13532385 | None:intergenic | 50.0% | |
| ! | GAAGCCCAACTCAGTTGGTA+AGG | - | chr1_4:13532434-13532453 | None:intergenic | 50.0% |
| GATTCGCACGTTGACAACAC+GGG | + | chr1_4:13532509-13532528 | Msa0151420:intron | 50.0% | |
| ! | ACTCATATACGCAAGGGCGT+TGG | - | chr1_4:13532540-13532559 | None:intergenic | 50.0% |
| !! | TGGCTCAGTTGGTAAGGAGT+TGG | - | chr1_4:13532563-13532582 | None:intergenic | 50.0% |
| !! | GTTGGGTTCTAGGGCTAACT+AGG | + | chr1_4:13532675-13532694 | Msa0151420:intron | 50.0% |
| !! | TGGGTTCTAGGGCTAACTAG+GGG | + | chr1_4:13532677-13532696 | Msa0151420:intron | 50.0% |
| CTAGGGCTAACTAGGGGTTA+AGG | + | chr1_4:13532683-13532702 | Msa0151420:intron | 50.0% | |
| GTTGGATTCACATCCCGCAA+GGG | - | chr1_4:13532765-13532784 | None:intergenic | 50.0% | |
| AGTTGGATTCACATCCCGCA+AGG | - | chr1_4:13532766-13532785 | None:intergenic | 50.0% | |
| TCCCTCCGCAACAGTTTAAG+AGG | - | chr1_4:13533277-13533296 | None:intergenic | 50.0% | |
| ACGACAGTGAATGCAGATGC+AGG | - | chr1_4:13533414-13533433 | None:intergenic | 50.0% | |
| CAGGATTCGTCAGATGATGC+AGG | - | chr1_4:13533503-13533522 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr1_4:13533667-13533686 | Msa0151420:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr1_4:13533668-13533687 | Msa0151420:intron | 50.0% | |
| AAGGTTACGGGTTCAAGTCC+TGG | - | chr1_4:13533758-13533777 | None:intergenic | 50.0% | |
| AGGCCAGACAAAGTCATCAC+AGG | - | chr1_4:13534308-13534327 | None:intergenic | 50.0% | |
| TGATGACTTTGTCTGGCCTG+TGG | + | chr1_4:13534309-13534328 | Msa0151420:CDS | 50.0% | |
| CTAGTTCAGAGGTTCGCTGA+GGG | - | chr1_4:13534597-13534616 | None:intergenic | 50.0% | |
| ACTAGTTCAGAGGTTCGCTG+AGG | - | chr1_4:13534598-13534617 | None:intergenic | 50.0% | |
| TTTCCAACTGAGAGTCAGGG+TGG | + | chr1_4:13534649-13534668 | Msa0151420:intron | 50.0% | |
| GTGGAGAAGCCAGTTCCATA+TGG | + | chr1_4:13534668-13534687 | Msa0151420:CDS | 50.0% | |
| ! | CAAGCATACGAGAGAGGCAT+CGG | - | chr1_4:13534738-13534757 | None:intergenic | 50.0% |
| CTTCGTCAAGCATACGAGAG+AGG | - | chr1_4:13534744-13534763 | None:intergenic | 50.0% | |
| CTGAAACACAGGAGAGGTTG+CGG | - | chr1_4:13534833-13534852 | None:intergenic | 50.0% | |
| TGATACGAGGCCTGAAACAC+AGG | - | chr1_4:13534844-13534863 | None:intergenic | 50.0% | |
| TTCGCTGCTGTTGTGATACG+AGG | - | chr1_4:13534857-13534876 | None:intergenic | 50.0% | |
| ! | CCGAAGATTTCTGGAAGCAC+AGG | + | chr1_4:13534965-13534984 | Msa0151420:CDS | 50.0% |
| ! | AGATTTCTGGAAGCACAGGC+TGG | + | chr1_4:13534969-13534988 | Msa0151420:CDS | 50.0% |
| TGATCTCAAAGACGCATGCG+AGG | + | chr1_4:13535026-13535045 | Msa0151420:CDS | 50.0% | |
| ! | TTGGGTTCCGGGGTTGACTT+GGG | + | chr1_4:13532321-13532340 | Msa0151420:intron | 55.0% |
| GAGTTGTACCCACGCTCTTG+TGG | + | chr1_4:13532393-13532412 | Msa0151420:intron | 55.0% | |
| ! | ACCAACTGAGTTGGGCTTCG+AGG | + | chr1_4:13532435-13532454 | Msa0151420:intron | 55.0% |
| TTGGGCTTCGAGGCTGACTA+GGG | + | chr1_4:13532445-13532464 | Msa0151420:intron | 55.0% | |
| CTGTTGCGGAGGGAAAAGAG+AGG | + | chr1_4:13533283-13533302 | Msa0151420:intron | 55.0% | |
| ! | TGCGGGAGCTTTAGTGCACT+GGG | - | chr1_4:13533662-13533681 | None:intergenic | 55.0% |
| ! | ATGCGGGAGCTTTAGTGCAC+TGG | - | chr1_4:13533663-13533682 | None:intergenic | 55.0% |
| TTCCCGAACCCTGCATATGC+GGG | - | chr1_4:13533679-13533698 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | - | chr1_4:13533680-13533699 | None:intergenic | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | + | chr1_4:13533679-13533698 | Msa0151420:intron | 55.0% | |
| CATATGCAGGGTTCGGGAAG+GGG | + | chr1_4:13533680-13533699 | Msa0151420:intron | 55.0% | |
| TCTCCACCCTGACTCTCAGT+TGG | - | chr1_4:13534655-13534674 | None:intergenic | 55.0% | |
| CGCAACCTCTCCTGTGTTTC+AGG | + | chr1_4:13534831-13534850 | Msa0151420:CDS | 55.0% | |
| AAGCACAGGCTGGCATTGCT+TGG | + | chr1_4:13534979-13534998 | Msa0151420:CDS | 55.0% | |
| CTTGTGCAGCTGGTACAACC+AGG | - | chr1_4:13535106-13535125 | None:intergenic | 55.0% | |
| ACATCTCCAGCATGAGCTCC+CGG | - | chr1_4:13535218-13535237 | None:intergenic | 55.0% | |
| GTTGGGTTCCGGGGTTGACT+TGG | + | chr1_4:13532320-13532339 | Msa0151420:intron | 60.0% | |
| !! | TGGGTTCCGGGGTTGACTTG+GGG | + | chr1_4:13532322-13532341 | Msa0151420:intron | 60.0% |
| CCTTGACCCCAAGTCAACCC+CGG | - | chr1_4:13532331-13532350 | None:intergenic | 60.0% | |
| GCCTCGAAGCCCAACTCAGT+TGG | - | chr1_4:13532439-13532458 | None:intergenic | 60.0% | |
| GTTGGGCTTCGAGGCTGACT+AGG | + | chr1_4:13532444-13532463 | Msa0151420:intron | 60.0% | |
| TGGGCTTCGAGGCTGACTAG+GGG | + | chr1_4:13532446-13532465 | Msa0151420:intron | 60.0% | |
| GGCTGACTAGGGGTCAAGAC+AGG | + | chr1_4:13532456-13532475 | Msa0151420:intron | 60.0% | |
| AAGTTGTGCCCACGCCCTTG+CGG | + | chr1_4:13532748-13532767 | Msa0151420:intron | 60.0% | |
| ! | TTCACATCCCGCAAGGGCGT+GGG | - | chr1_4:13532759-13532778 | None:intergenic | 60.0% |
| ATTCACATCCCGCAAGGGCG+TGG | - | chr1_4:13532760-13532779 | None:intergenic | 60.0% | |
| ATGGCTATCCCCTGCTGCCT+GGG | - | chr1_4:13533546-13533565 | None:intergenic | 60.0% | |
| TATGGCTATCCCCTGCTGCC+TGG | - | chr1_4:13533547-13533566 | None:intergenic | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | + | chr1_4:13533673-13533692 | Msa0151420:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | + | chr1_4:13533674-13533693 | Msa0151420:intron | 60.0% | |
| CGCATATGCAGGGTTCGGGA+AGG | + | chr1_4:13533678-13533697 | Msa0151420:intron | 60.0% | |
| CGAGGCCTGAAACACAGGAG+AGG | - | chr1_4:13534839-13534858 | None:intergenic | 60.0% | |
| GTATCTCAGAAGGGCCGTGC+AGG | - | chr1_4:13534926-13534945 | None:intergenic | 60.0% | |
| !! | CCGGGGTTGACTTGGGGTCA+AGG | + | chr1_4:13532328-13532347 | Msa0151420:intron | 65.0% |
| AGTTGTGCCCACGCCCTTGC+GGG | + | chr1_4:13532749-13532768 | Msa0151420:intron | 65.0% | |
| TATCCCTTGCCCCAGGCAGC+AGG | + | chr1_4:13533533-13533552 | Msa0151420:intron | 65.0% | |
| ATCCCTTGCCCCAGGCAGCA+GGG | + | chr1_4:13533534-13533553 | Msa0151420:intron | 65.0% | |
| TGGCTATCCCCTGCTGCCTG+GGG | - | chr1_4:13533545-13533564 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1_4:13533693-13533712 | Msa0151420:intron | 65.0% | |
| TGCAGACCGGGAGCTCATGC+TGG | + | chr1_4:13535209-13535228 | Msa0151420:CDS | 65.0% | |
| TCCCTTGCCCCAGGCAGCAG+GGG | + | chr1_4:13533535-13533554 | Msa0151420:intron | 70.0% | |
| TCCCCTGCTGCCTGGGGCAA+GGG | - | chr1_4:13533539-13533558 | None:intergenic | 70.0% | |
| ATCCCCTGCTGCCTGGGGCA+AGG | - | chr1_4:13533540-13533559 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 13531270 | 13535477 | 13531270 | ID=Msa0151420;Name=Msa0151420 |
| chr1_4 | mRNA | 13531270 | 13535477 | 13531270 | ID=Msa0151420-mRNA-1;Parent=Msa0151420;Name=Msa0151420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=170|0.66|0.75|1|1|1|4|211|372 |
| chr1_4 | exon | 13531270 | 13531552 | 13531270 | ID=Msa0151420-mRNA-1:exon:5368;Parent=Msa0151420-mRNA-1 |
| chr1_4 | exon | 13531635 | 13531792 | 13531635 | ID=Msa0151420-mRNA-1:exon:5369;Parent=Msa0151420-mRNA-1 |
| chr1_4 | exon | 13534152 | 13534399 | 13534152 | ID=Msa0151420-mRNA-1:exon:5370;Parent=Msa0151420-mRNA-1 |
| chr1_4 | exon | 13534667 | 13535477 | 13534667 | ID=Msa0151420-mRNA-1:exon:5371;Parent=Msa0151420-mRNA-1 |
| chr1_4 | five_prime_UTR | 13531270 | 13531439 | 13531270 | ID=Msa0151420-mRNA-1:five_prime_utr;Parent=Msa0151420-mRNA-1 |
| chr1_4 | CDS | 13531440 | 13531552 | 13531440 | ID=Msa0151420-mRNA-1:cds;Parent=Msa0151420-mRNA-1 |
| chr1_4 | CDS | 13531635 | 13531792 | 13531635 | ID=Msa0151420-mRNA-1:cds;Parent=Msa0151420-mRNA-1 |
| chr1_4 | CDS | 13534152 | 13534399 | 13534152 | ID=Msa0151420-mRNA-1:cds;Parent=Msa0151420-mRNA-1 |
| chr1_4 | CDS | 13534667 | 13535266 | 13534667 | ID=Msa0151420-mRNA-1:cds;Parent=Msa0151420-mRNA-1 |
| chr1_4 | three_prime_UTR | 13535267 | 13535477 | 13535267 | ID=Msa0151420-mRNA-1:three_prime_utr;Parent=Msa0151420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
