Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152960 | XP_024630307.1 | 82.437 | 279 | 34 | 2 | 37 | 300 | 5 | 283 | 2.33e-157 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152960 | sp|Q8RYD1|REM16_ARATH | 25.962 | 312 | 187 | 13 | 15 | 289 | 18 | 322 | 3.99e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152960 | A0A072VFY6 | 85.714 | 175 | 22 | 1 | 1 | 172 | 1 | 175 | 6.09e-106 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0152960 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152960 | MtrunA17_Chr1g0163101 | 74.706 | 170 | 36 | 3 | 7 | 172 | 2 | 168 | 3.81e-87 | 259 |
| Msa0152960 | MtrunA17_Chr1g0162161 | 84.892 | 139 | 18 | 1 | 37 | 172 | 3 | 141 | 5.90e-83 | 248 |
| Msa0152960 | MtrunA17_Chr1g0163131 | 45.066 | 304 | 134 | 6 | 10 | 284 | 6 | 305 | 3.17e-78 | 241 |
| Msa0152960 | MtrunA17_Chr1g0162151 | 80.952 | 147 | 27 | 1 | 170 | 316 | 3 | 148 | 1.82e-73 | 226 |
| Msa0152960 | MtrunA17_Chr1g0163251 | 43.902 | 287 | 136 | 4 | 31 | 299 | 14 | 293 | 1.58e-70 | 224 |
| Msa0152960 | MtrunA17_Chr1g0163091 | 69.935 | 153 | 42 | 2 | 170 | 320 | 3 | 153 | 5.39e-68 | 209 |
| Msa0152960 | MtrunA17_Chr1g0163231 | 44.681 | 282 | 132 | 8 | 22 | 288 | 9 | 281 | 1.79e-64 | 205 |
| Msa0152960 | MtrunA17_Chr1g0163081 | 73.913 | 138 | 28 | 3 | 37 | 171 | 5 | 137 | 3.05e-64 | 199 |
| Msa0152960 | MtrunA17_Chr1g0163261 | 40.268 | 298 | 144 | 7 | 22 | 297 | 9 | 294 | 1.35e-62 | 201 |
| Msa0152960 | MtrunA17_Chr6g0476181 | 64.286 | 154 | 30 | 3 | 37 | 170 | 1 | 149 | 5.57e-60 | 189 |
| Msa0152960 | MtrunA17_Chr1g0163181 | 37.179 | 312 | 158 | 8 | 20 | 299 | 1 | 306 | 6.70e-60 | 197 |
| Msa0152960 | MtrunA17_Chr1g0171611 | 40.752 | 319 | 137 | 11 | 8 | 310 | 2 | 284 | 1.72e-59 | 192 |
| Msa0152960 | MtrunA17_Chr1g0163141 | 61.635 | 159 | 39 | 3 | 36 | 172 | 9 | 167 | 2.48e-56 | 181 |
| Msa0152960 | MtrunA17_Chr1g0163121 | 69.231 | 130 | 33 | 3 | 36 | 162 | 9 | 134 | 2.20e-55 | 177 |
| Msa0152960 | MtrunA17_Chr1g0163201 | 37.282 | 287 | 142 | 7 | 38 | 296 | 19 | 295 | 9.38e-54 | 181 |
| Msa0152960 | MtrunA17_Chr1g0163161 | 65.891 | 129 | 40 | 2 | 50 | 174 | 1 | 129 | 3.53e-51 | 166 |
| Msa0152960 | MtrunA17_Chr4g0067431 | 27.414 | 321 | 184 | 11 | 19 | 298 | 12 | 324 | 1.47e-31 | 120 |
| Msa0152960 | MtrunA17_Chr6g0476171 | 44.681 | 141 | 71 | 3 | 164 | 297 | 6 | 146 | 4.12e-30 | 114 |
| Msa0152960 | MtrunA17_Chr3g0131891 | 28.475 | 295 | 187 | 11 | 18 | 290 | 15 | 307 | 3.73e-29 | 114 |
| Msa0152960 | MtrunA17_Chr1g0163151 | 44.094 | 127 | 66 | 1 | 170 | 296 | 3 | 124 | 1.15e-27 | 107 |
| Msa0152960 | MtrunA17_Chr8g0390841 | 29.167 | 336 | 186 | 14 | 8 | 298 | 16 | 344 | 3.11e-27 | 111 |
| Msa0152960 | MtrunA17_Chr1g0163111 | 43.966 | 116 | 65 | 0 | 177 | 292 | 2 | 117 | 4.79e-27 | 106 |
| Msa0152960 | MtrunA17_Chr1g0163221 | 27.586 | 319 | 184 | 12 | 19 | 305 | 8 | 311 | 3.99e-26 | 106 |
| Msa0152960 | MtrunA17_Chr1g0208771 | 30.769 | 299 | 162 | 13 | 38 | 298 | 13 | 304 | 1.66e-25 | 105 |
| Msa0152960 | MtrunA17_Chr1g0208771 | 25.448 | 279 | 177 | 10 | 22 | 288 | 201 | 460 | 1.70e-14 | 73.9 |
| Msa0152960 | MtrunA17_Chr3g0103171 | 27.985 | 268 | 163 | 9 | 38 | 284 | 6 | 264 | 2.11e-24 | 99.8 |
| Msa0152960 | MtrunA17_Chr7g0233561 | 27.815 | 302 | 182 | 11 | 18 | 286 | 14 | 312 | 1.07e-21 | 93.6 |
| Msa0152960 | MtrunA17_Chr1g0163241 | 39.474 | 114 | 62 | 3 | 38 | 144 | 23 | 136 | 1.93e-21 | 89.4 |
| Msa0152960 | MtrunA17_Chr5g0419211 | 43.478 | 92 | 51 | 1 | 208 | 298 | 11 | 102 | 1.05e-20 | 85.5 |
| Msa0152960 | MtrunA17_Chr7g0233531 | 28.679 | 265 | 172 | 9 | 37 | 286 | 1 | 263 | 1.87e-20 | 89.4 |
| Msa0152960 | MtrunA17_Chr3g0077411 | 25.676 | 296 | 179 | 9 | 5 | 284 | 245 | 515 | 2.54e-20 | 91.3 |
| Msa0152960 | MtrunA17_Chr1g0163071 | 24.510 | 306 | 180 | 7 | 37 | 298 | 1 | 299 | 2.75e-20 | 89.4 |
| Msa0152960 | MtrunA17_Chr7g0233521 | 27.957 | 279 | 156 | 11 | 37 | 286 | 1 | 263 | 4.36e-19 | 85.5 |
| Msa0152960 | MtrunA17_Chr1g0163191 | 39.623 | 106 | 60 | 2 | 31 | 132 | 14 | 119 | 1.09e-18 | 81.6 |
| Msa0152960 | MtrunA17_Chr7g0233541 | 26.316 | 285 | 170 | 11 | 37 | 286 | 1 | 280 | 4.43e-17 | 80.1 |
| Msa0152960 | MtrunA17_Chr1g0154131 | 27.208 | 283 | 178 | 9 | 15 | 272 | 177 | 456 | 5.11e-17 | 81.3 |
| Msa0152960 | MtrunA17_Chr5g0419201 | 33.588 | 131 | 77 | 4 | 22 | 142 | 16 | 146 | 7.06e-17 | 77.4 |
| Msa0152960 | MtrunA17_Chr6g0467351 | 41.489 | 94 | 51 | 3 | 19 | 108 | 12 | 105 | 7.72e-17 | 78.2 |
| Msa0152960 | MtrunA17_Chr1g0163061 | 42.553 | 94 | 50 | 2 | 19 | 108 | 12 | 105 | 2.08e-16 | 77.8 |
| Msa0152960 | MtrunA17_Chr5g0429931 | 26.255 | 259 | 156 | 9 | 38 | 287 | 11 | 243 | 2.22e-16 | 77.4 |
| Msa0152960 | MtrunA17_Chr3g0077451 | 26.336 | 262 | 151 | 10 | 36 | 289 | 10 | 237 | 5.73e-16 | 76.3 |
| Msa0152960 | MtrunA17_Chr7g0233571 | 35.772 | 123 | 73 | 3 | 21 | 137 | 9 | 131 | 1.54e-15 | 74.3 |
| Msa0152960 | MtrunA17_Chr3g0103181 | 27.397 | 292 | 178 | 13 | 12 | 284 | 2 | 278 | 2.62e-15 | 74.7 |
| Msa0152960 | MtrunA17_Chr1g0154161 | 23.759 | 282 | 184 | 10 | 15 | 273 | 23 | 296 | 2.36e-14 | 72.8 |
| Msa0152960 | MtrunA17_Chr3g0077461 | 24.306 | 288 | 170 | 9 | 5 | 284 | 220 | 467 | 3.57e-12 | 67.0 |
| Msa0152960 | MtrunA17_Chr3g0103191 | 34.109 | 129 | 72 | 6 | 20 | 142 | 10 | 131 | 2.47e-11 | 63.2 |
| Msa0152960 | MtrunA17_Chr3g0077431 | 27.434 | 226 | 122 | 10 | 72 | 289 | 7 | 198 | 2.61e-11 | 62.0 |
| Msa0152960 | MtrunA17_Chr4g0009491 | 26.009 | 223 | 135 | 7 | 21 | 237 | 224 | 422 | 3.00e-11 | 63.9 |
| Msa0152960 | MtrunA17_Chr3g0077381 | 25.561 | 223 | 129 | 7 | 21 | 237 | 246 | 437 | 7.88e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152960 | AT4G33280.1 | 25.962 | 312 | 187 | 13 | 15 | 289 | 18 | 322 | 4.05e-14 | 72.4 |
Find 50 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAATCTGGTTAGAAATT+TGG | 0.136468 | 1_4:+16040550 | None:intergenic |
| TCCCTTCTTGTTTACAAATC+TGG | 0.256431 | 1_4:+16040538 | None:intergenic |
| CACAACGTGGTGATGATATT+TGG | 0.270123 | 1_4:-16040719 | Msa0152960:CDS |
| CAGACTCATTTGGAAGTCTA+AGG | 0.283975 | 1_4:+16040760 | None:intergenic |
| TTTGGAAGTCTAAGGGATAT+TGG | 0.307140 | 1_4:+16040768 | None:intergenic |
| AGTCTGAGTGTAAAATGTTT+TGG | 0.322768 | 1_4:-16040743 | Msa0152960:CDS |
| ATGATATTTGGCTTATGAAT+TGG | 0.336273 | 1_4:-16040707 | Msa0152960:CDS |
| TGTTTGTTTATTAAAGTTTG+TGG | 0.340592 | 1_4:-16039374 | Msa0152960:CDS |
| TCAAAGGGATTGCAAGCATT+AGG | 0.348097 | 1_4:-16039630 | Msa0152960:CDS |
| CAAAGGGATTGCAAGCATTA+GGG | 0.352259 | 1_4:-16039629 | Msa0152960:CDS |
| AAAACTTGGATTCTTATCAT+TGG | 0.358112 | 1_4:+16039808 | None:intergenic |
| TATTCTCTTGAAAACTTACT+TGG | 0.379463 | 1_4:+16039664 | None:intergenic |
| GGATTTCTTATTATTTGCTT+CGG | 0.392382 | 1_4:+16039829 | None:intergenic |
| ACTCACGAAGTTGAATAGTT+TGG | 0.408216 | 1_4:+16041709 | None:intergenic |
| ACTCCTGCTGCTACACTTCA+AGG | 0.414605 | 1_4:-16040474 | Msa0152960:CDS |
| GTCAATTTAAGTTCAAAACT+TGG | 0.433190 | 1_4:+16039794 | None:intergenic |
| TGAGTGTTCTTACTAGCTCT+TGG | 0.453374 | 1_4:+16041679 | None:intergenic |
| GGCTTGATTCCTCTCTAGCT+CGG | 0.457584 | 1_4:+16039434 | None:intergenic |
| TGGCCGTGGAAGTCATGATA+AGG | 0.474120 | 1_4:-16041745 | Msa0152960:CDS |
| AACCAGATTTGTAAACAAGA+AGG | 0.479388 | 1_4:-16040540 | Msa0152960:CDS |
| GAATGGTGGTGTGCTGTTGA+AGG | 0.481500 | 1_4:+16041772 | None:intergenic |
| GTCCCTTGAAGTGTAGCAGC+AGG | 0.486905 | 1_4:+16040471 | None:intergenic |
| TATCTCTCTACAAAATTCCT+TGG | 0.487897 | 1_4:+16040810 | None:intergenic |
| AATACTTGAACGAGTTCAAA+GGG | 0.491876 | 1_4:-16039645 | Msa0152960:CDS |
| GGCCGTGGAAGTCATGATAA+GGG | 0.518786 | 1_4:-16041744 | Msa0152960:CDS |
| GCAGGAGTAGCAATATCAAT+CGG | 0.522530 | 1_4:+16040489 | None:intergenic |
| ACCACCATTCACCATGGCCG+TGG | 0.523585 | 1_4:-16041759 | Msa0152960:CDS |
| GTTCTATTGTGAATGGTGGT+TGG | 0.525249 | 1_4:-16039552 | Msa0152960:CDS |
| ACTTCCACGGCCATGGTGAA+TGG | 0.529893 | 1_4:+16041755 | None:intergenic |
| GCTTGATTCCTCTCTAGCTC+GGG | 0.531379 | 1_4:+16039435 | None:intergenic |
| GGGTTGATGAAGATAGAACT+TGG | 0.534209 | 1_4:-16039609 | Msa0152960:CDS |
| TATCATGACTTCCACGGCCA+TGG | 0.534966 | 1_4:+16041748 | None:intergenic |
| TTCTATTTCCCGAGCTAGAG+AGG | 0.537691 | 1_4:-16039443 | Msa0152960:CDS |
| TGATGAAGATAGAACTTGGA+AGG | 0.543162 | 1_4:-16039605 | Msa0152960:CDS |
| ATAGAAATATTAAAAGAAAG+AGG | 0.543614 | 1_4:+16039460 | None:intergenic |
| GAATACTTGAACGAGTTCAA+AGG | 0.559537 | 1_4:-16039646 | Msa0152960:CDS |
| TTTGCACGGTCGCTTAGATG+TGG | 0.563772 | 1_4:-16040678 | Msa0152960:CDS |
| ACCAGATTTGTAAACAAGAA+GGG | 0.569287 | 1_4:-16040539 | Msa0152960:CDS |
| AACAGAAGTTCTATTGTGAA+TGG | 0.573160 | 1_4:-16039559 | Msa0152960:CDS |
| TGTAAACAAGAAGGGAGTGA+TGG | 0.584899 | 1_4:-16040531 | Msa0152960:CDS |
| TTCCCTTATCATGACTTCCA+CGG | 0.586234 | 1_4:+16041742 | None:intergenic |
| AATGGTGGTGTGCTGTTGAA+GGG | 0.587983 | 1_4:+16041773 | None:intergenic |
| CTCCTGCTGCTACACTTCAA+GGG | 0.592935 | 1_4:-16040473 | Msa0152960:CDS |
| AGACTCATTTGGAAGTCTAA+GGG | 0.595723 | 1_4:+16040761 | None:intergenic |
| TGGTTGGAATTTATTTACCA+AGG | 0.603797 | 1_4:-16039536 | Msa0152960:CDS |
| AGAAGTTCTATTGTGAATGG+TGG | 0.647616 | 1_4:-16039556 | Msa0152960:CDS |
| TCCACGGCCATGGTGAATGG+TGG | 0.655020 | 1_4:+16041758 | None:intergenic |
| AAGGAAAATAACTTGCAAGT+CGG | 0.656533 | 1_4:-16039517 | Msa0152960:CDS |
| TGTGCATGCAGATGATACCA+AGG | 0.664773 | 1_4:-16040827 | Msa0152960:intron |
| CAGCACACCACCATTCACCA+TGG | 0.696960 | 1_4:-16041765 | Msa0152960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATACATAAATAAAGT+GGG | + | chr1_4:16040885-16040904 | None:intergenic | 10.0% |
| !! | TATAAAATACATAAATAAAG+TGG | + | chr1_4:16040886-16040905 | None:intergenic | 10.0% |
| !! | ATAAAATACATAAATAAAGT+GGG | + | chr1_4:16040885-16040904 | None:intergenic | 10.0% |
| !! | TATAAAATACATAAATAAAG+TGG | + | chr1_4:16040886-16040905 | None:intergenic | 10.0% |
| !!! | CAATGTATGAATTTAATTTT+AGG | + | chr1_4:16039941-16039960 | None:intergenic | 15.0% |
| !!! | AATCATAAATGCTTTTTTTT+CGG | + | chr1_4:16040220-16040239 | None:intergenic | 15.0% |
| !! | TTAAAATTGAGATAATCAAA+GGG | + | chr1_4:16040797-16040816 | None:intergenic | 15.0% |
| !! | ATTAAAATTGAGATAATCAA+AGG | + | chr1_4:16040798-16040817 | None:intergenic | 15.0% |
| !! | AGAGAAATATGTATTTAAAA+AGG | + | chr1_4:16040913-16040932 | None:intergenic | 15.0% |
| !!! | AGAATATATATTAATTTTGC+AGG | - | chr1_4:16041226-16041245 | Msa0152960:intron | 15.0% |
| !!! | TTTGAAAATGTCTATTATTT+TGG | - | chr1_4:16041393-16041412 | Msa0152960:intron | 15.0% |
| !! | ATAGAAATATTAAAAGAAAG+AGG | + | chr1_4:16041668-16041687 | None:intergenic | 15.0% |
| !!! | CAATGTATGAATTTAATTTT+AGG | + | chr1_4:16039941-16039960 | None:intergenic | 15.0% |
| !!! | AATCATAAATGCTTTTTTTT+CGG | + | chr1_4:16040220-16040239 | None:intergenic | 15.0% |
| !! | TTAAAATTGAGATAATCAAA+GGG | + | chr1_4:16040797-16040816 | None:intergenic | 15.0% |
| !! | ATTAAAATTGAGATAATCAA+AGG | + | chr1_4:16040798-16040817 | None:intergenic | 15.0% |
| !! | AGAGAAATATGTATTTAAAA+AGG | + | chr1_4:16040913-16040932 | None:intergenic | 15.0% |
| !!! | AGAATATATATTAATTTTGC+AGG | - | chr1_4:16041226-16041245 | Msa0152960:intron | 15.0% |
| !!! | TTTGAAAATGTCTATTATTT+TGG | - | chr1_4:16041393-16041412 | Msa0152960:intron | 15.0% |
| !! | ATAGAAATATTAAAAGAAAG+AGG | + | chr1_4:16041668-16041687 | None:intergenic | 15.0% |
| !! | ATAAAAACTACAAATCATCA+GGG | - | chr1_4:16039781-16039800 | Msa0152960:CDS | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | - | chr1_4:16040474-16040493 | Msa0152960:CDS | 20.0% |
| !! | TGATTTATGTATCTATTTGT+AGG | - | chr1_4:16040750-16040769 | Msa0152960:CDS | 20.0% |
| !!! | TTCAATTTTGTTTCGATTAA+AGG | - | chr1_4:16040940-16040959 | Msa0152960:intron | 20.0% |
| !!! | GTAAAAAGTACTATTTATCT+AGG | - | chr1_4:16040994-16041013 | Msa0152960:intron | 20.0% |
| !!! | ACTTACAAATAATTTTCCTT+GGG | + | chr1_4:16041368-16041387 | None:intergenic | 20.0% |
| !!! | AACTTACAAATAATTTTCCT+TGG | + | chr1_4:16041369-16041388 | None:intergenic | 20.0% |
| !! | TGTTTGTTTATTAAAGTTTG+TGG | - | chr1_4:16041751-16041770 | Msa0152960:CDS | 20.0% |
| !!! | TATTAAAGTTTGTGGTTTTT+TGG | - | chr1_4:16041759-16041778 | Msa0152960:CDS | 20.0% |
| !! | ATAAAAACTACAAATCATCA+GGG | - | chr1_4:16039781-16039800 | Msa0152960:CDS | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | - | chr1_4:16040474-16040493 | Msa0152960:CDS | 20.0% |
| !! | TGATTTATGTATCTATTTGT+AGG | - | chr1_4:16040750-16040769 | Msa0152960:CDS | 20.0% |
| !!! | TTCAATTTTGTTTCGATTAA+AGG | - | chr1_4:16040940-16040959 | Msa0152960:intron | 20.0% |
| !!! | GTAAAAAGTACTATTTATCT+AGG | - | chr1_4:16040994-16041013 | Msa0152960:intron | 20.0% |
| !!! | ACTTACAAATAATTTTCCTT+GGG | + | chr1_4:16041368-16041387 | None:intergenic | 20.0% |
| !!! | AACTTACAAATAATTTTCCT+TGG | + | chr1_4:16041369-16041388 | None:intergenic | 20.0% |
| !! | TGTTTGTTTATTAAAGTTTG+TGG | - | chr1_4:16041751-16041770 | Msa0152960:CDS | 20.0% |
| !!! | TATTAAAGTTTGTGGTTTTT+TGG | - | chr1_4:16041759-16041778 | Msa0152960:CDS | 20.0% |
| !! | ACGTATCTAGTCAAATTTTA+GGG | - | chr1_4:16039689-16039708 | Msa0152960:intron | 25.0% |
| ! | CATAAAAACTACAAATCATC+AGG | - | chr1_4:16039780-16039799 | Msa0152960:CDS | 25.0% |
| ! | GGGTAACTAATTATTTCAAA+TGG | - | chr1_4:16039853-16039872 | Msa0152960:intron | 25.0% |
| ! | GAGATTCTCAATTTCATTAA+TGG | - | chr1_4:16039890-16039909 | Msa0152960:intron | 25.0% |
| !! | AAATTTGTCATTTGATTCTC+CGG | + | chr1_4:16039974-16039993 | None:intergenic | 25.0% |
| ! | ACAAATTTCTAATCATTGCT+TGG | - | chr1_4:16039986-16040005 | Msa0152960:intron | 25.0% |
| ! | TTTGTGATAGACTTAAAATG+TGG | - | chr1_4:16040069-16040088 | Msa0152960:intron | 25.0% |
| ! | TTGTTGAAGCAAAATATGTT+TGG | + | chr1_4:16040114-16040133 | None:intergenic | 25.0% |
| ! | AAAAATTTAGGTGGGAAAAT+GGG | + | chr1_4:16040193-16040212 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTGACAAAAATTT+AGG | + | chr1_4:16040205-16040224 | None:intergenic | 25.0% |
| !! | ATGATATTTGGCTTATGAAT+TGG | - | chr1_4:16040418-16040437 | Msa0152960:intron | 25.0% |
| !! | TGAATTGGAAAAATTTTGCA+CGG | - | chr1_4:16040433-16040452 | Msa0152960:CDS | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | - | chr1_4:16040477-16040496 | Msa0152960:CDS | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | - | chr1_4:16040478-16040497 | Msa0152960:CDS | 25.0% |
| ! | TACAAATCTGGTTAGAAATT+TGG | + | chr1_4:16040578-16040597 | None:intergenic | 25.0% |
| ! | TGGAGTAAAAATAGAATAGA+AGG | + | chr1_4:16040827-16040846 | None:intergenic | 25.0% |
| !! | ATGTACTTTTGCATTTTGTA+TGG | + | chr1_4:16040847-16040866 | None:intergenic | 25.0% |
| !! | ATACAAAATGCAAAAGTACA+TGG | - | chr1_4:16040846-16040865 | Msa0152960:intron | 25.0% |
| ! | ATATATTCTCATCATTTGCA+AGG | + | chr1_4:16041215-16041234 | None:intergenic | 25.0% |
| ! | GGATTTCTTATTATTTGCTT+CGG | + | chr1_4:16041299-16041318 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTTATCAT+TGG | + | chr1_4:16041320-16041339 | None:intergenic | 25.0% |
| !! | GTCAATTTAAGTTCAAAACT+TGG | + | chr1_4:16041334-16041353 | None:intergenic | 25.0% |
| ! | TATTCTCTTGAAAACTTACT+TGG | + | chr1_4:16041464-16041483 | None:intergenic | 25.0% |
| !!! | AGTAACCTTGCAATTTTTTA+GGG | + | chr1_4:16041715-16041734 | None:intergenic | 25.0% |
| !!! | AAGTAACCTTGCAATTTTTT+AGG | + | chr1_4:16041716-16041735 | None:intergenic | 25.0% |
| !! | ACGTATCTAGTCAAATTTTA+GGG | - | chr1_4:16039689-16039708 | Msa0152960:intron | 25.0% |
| ! | CATAAAAACTACAAATCATC+AGG | - | chr1_4:16039780-16039799 | Msa0152960:CDS | 25.0% |
| ! | GGGTAACTAATTATTTCAAA+TGG | - | chr1_4:16039853-16039872 | Msa0152960:intron | 25.0% |
| ! | GAGATTCTCAATTTCATTAA+TGG | - | chr1_4:16039890-16039909 | Msa0152960:intron | 25.0% |
| !! | AAATTTGTCATTTGATTCTC+CGG | + | chr1_4:16039974-16039993 | None:intergenic | 25.0% |
| ! | ACAAATTTCTAATCATTGCT+TGG | - | chr1_4:16039986-16040005 | Msa0152960:intron | 25.0% |
| ! | TTTGTGATAGACTTAAAATG+TGG | - | chr1_4:16040069-16040088 | Msa0152960:intron | 25.0% |
| ! | TTGTTGAAGCAAAATATGTT+TGG | + | chr1_4:16040114-16040133 | None:intergenic | 25.0% |
| ! | AAAAATTTAGGTGGGAAAAT+GGG | + | chr1_4:16040193-16040212 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTGACAAAAATTT+AGG | + | chr1_4:16040205-16040224 | None:intergenic | 25.0% |
| !! | ATGATATTTGGCTTATGAAT+TGG | - | chr1_4:16040418-16040437 | Msa0152960:intron | 25.0% |
| !! | TGAATTGGAAAAATTTTGCA+CGG | - | chr1_4:16040433-16040452 | Msa0152960:CDS | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | - | chr1_4:16040477-16040496 | Msa0152960:CDS | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | - | chr1_4:16040478-16040497 | Msa0152960:CDS | 25.0% |
| ! | TACAAATCTGGTTAGAAATT+TGG | + | chr1_4:16040578-16040597 | None:intergenic | 25.0% |
| ! | TGGAGTAAAAATAGAATAGA+AGG | + | chr1_4:16040827-16040846 | None:intergenic | 25.0% |
| !! | ATGTACTTTTGCATTTTGTA+TGG | + | chr1_4:16040847-16040866 | None:intergenic | 25.0% |
| !! | ATACAAAATGCAAAAGTACA+TGG | - | chr1_4:16040846-16040865 | Msa0152960:intron | 25.0% |
| ! | ATATATTCTCATCATTTGCA+AGG | + | chr1_4:16041215-16041234 | None:intergenic | 25.0% |
| ! | GGATTTCTTATTATTTGCTT+CGG | + | chr1_4:16041299-16041318 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTTATCAT+TGG | + | chr1_4:16041320-16041339 | None:intergenic | 25.0% |
| !! | GTCAATTTAAGTTCAAAACT+TGG | + | chr1_4:16041334-16041353 | None:intergenic | 25.0% |
| ! | TATTCTCTTGAAAACTTACT+TGG | + | chr1_4:16041464-16041483 | None:intergenic | 25.0% |
| !!! | AGTAACCTTGCAATTTTTTA+GGG | + | chr1_4:16041715-16041734 | None:intergenic | 25.0% |
| !!! | AAGTAACCTTGCAATTTTTT+AGG | + | chr1_4:16041716-16041735 | None:intergenic | 25.0% |
| TGGTGAGGAAATAAAAGAAA+CGG | + | chr1_4:16039534-16039553 | None:intergenic | 30.0% | |
| !! | TCTTGCTTTGTTAGTTTGTT+TGG | + | chr1_4:16039554-16039573 | None:intergenic | 30.0% |
| TGATATAACAAAGCTTGAGA+GGG | + | chr1_4:16039603-16039622 | None:intergenic | 30.0% | |
| ATGATATAACAAAGCTTGAG+AGG | + | chr1_4:16039604-16039623 | None:intergenic | 30.0% | |
| GCTGAATATGTACAATGAAA+TGG | + | chr1_4:16039663-16039682 | None:intergenic | 30.0% | |
| ! | CACGTATCTAGTCAAATTTT+AGG | - | chr1_4:16039688-16039707 | Msa0152960:intron | 30.0% |
| ! | CGTATCTAGTCAAATTTTAG+GGG | - | chr1_4:16039690-16039709 | Msa0152960:intron | 30.0% |
| !! | AATTAGTTACCCATTTTTGC+TGG | + | chr1_4:16039845-16039864 | None:intergenic | 30.0% |
| AATTTCTAATCATTGCTTGG+AGG | - | chr1_4:16039989-16040008 | Msa0152960:intron | 30.0% | |
| TGATAGACTTAAAATGTGGA+TGG | - | chr1_4:16040073-16040092 | Msa0152960:intron | 30.0% | |
| GATAGACTTAAAATGTGGAT+GGG | - | chr1_4:16040074-16040093 | Msa0152960:intron | 30.0% | |
| ATAGACTTAAAATGTGGATG+GGG | - | chr1_4:16040075-16040094 | Msa0152960:intron | 30.0% | |
| GCAAAATATGTTTGGATCAT+GGG | + | chr1_4:16040106-16040125 | None:intergenic | 30.0% | |
| AGCAAAATATGTTTGGATCA+TGG | + | chr1_4:16040107-16040126 | None:intergenic | 30.0% | |
| ! | CATATTTTGCTTCAACAAGT+TGG | - | chr1_4:16040116-16040135 | Msa0152960:intron | 30.0% |
| CAAAAATTTAGGTGGGAAAA+TGG | + | chr1_4:16040194-16040213 | None:intergenic | 30.0% | |
| ! | TAATCCAAGTTGAAACTCAT+TGG | - | chr1_4:16040265-16040284 | Msa0152960:intron | 30.0% |
| AAAACCAATGAGTTTCAACT+TGG | + | chr1_4:16040272-16040291 | None:intergenic | 30.0% | |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_4:16040318-16040337 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_4:16040319-16040338 | Msa0152960:intron | 30.0% |
| ! | ATTTTACACTCAGACTCATT+TGG | + | chr1_4:16040378-16040397 | None:intergenic | 30.0% |
| ! | AGTCTGAGTGTAAAATGTTT+TGG | - | chr1_4:16040382-16040401 | Msa0152960:intron | 30.0% |
| ! | GTCTGAGTGTAAAATGTTTT+GGG | - | chr1_4:16040383-16040402 | Msa0152960:intron | 30.0% |
| AACCAGATTTGTAAACAAGA+AGG | - | chr1_4:16040585-16040604 | Msa0152960:CDS | 30.0% | |
| ACCAGATTTGTAAACAAGAA+GGG | - | chr1_4:16040586-16040605 | Msa0152960:CDS | 30.0% | |
| ! | AAAAAAGCTCTAACAAAGTG+AGG | + | chr1_4:16041026-16041045 | None:intergenic | 30.0% |
| ! | AATTTTGCAGGTAGTAACAA+AGG | - | chr1_4:16041238-16041257 | Msa0152960:intron | 30.0% |
| GTATTCTCTGTTTCAATTCA+TGG | + | chr1_4:16041442-16041461 | None:intergenic | 30.0% | |
| AATACTTGAACGAGTTCAAA+GGG | - | chr1_4:16041480-16041499 | Msa0152960:intron | 30.0% | |
| AACAGAAGTTCTATTGTGAA+TGG | - | chr1_4:16041566-16041585 | Msa0152960:intron | 30.0% | |
| TGGTTGGAATTTATTTACCA+AGG | - | chr1_4:16041589-16041608 | Msa0152960:intron | 30.0% | |
| ! | AAGGAAAATAACTTGCAAGT+CGG | - | chr1_4:16041608-16041627 | Msa0152960:intron | 30.0% |
| TGGTGAGGAAATAAAAGAAA+CGG | + | chr1_4:16039534-16039553 | None:intergenic | 30.0% | |
| !! | TCTTGCTTTGTTAGTTTGTT+TGG | + | chr1_4:16039554-16039573 | None:intergenic | 30.0% |
| TGATATAACAAAGCTTGAGA+GGG | + | chr1_4:16039603-16039622 | None:intergenic | 30.0% | |
| ATGATATAACAAAGCTTGAG+AGG | + | chr1_4:16039604-16039623 | None:intergenic | 30.0% | |
| GCTGAATATGTACAATGAAA+TGG | + | chr1_4:16039663-16039682 | None:intergenic | 30.0% | |
| ! | CACGTATCTAGTCAAATTTT+AGG | - | chr1_4:16039688-16039707 | Msa0152960:intron | 30.0% |
| ! | CGTATCTAGTCAAATTTTAG+GGG | - | chr1_4:16039690-16039709 | Msa0152960:intron | 30.0% |
| !! | AATTAGTTACCCATTTTTGC+TGG | + | chr1_4:16039845-16039864 | None:intergenic | 30.0% |
| AATTTCTAATCATTGCTTGG+AGG | - | chr1_4:16039989-16040008 | Msa0152960:intron | 30.0% | |
| TGATAGACTTAAAATGTGGA+TGG | - | chr1_4:16040073-16040092 | Msa0152960:intron | 30.0% | |
| GATAGACTTAAAATGTGGAT+GGG | - | chr1_4:16040074-16040093 | Msa0152960:intron | 30.0% | |
| ATAGACTTAAAATGTGGATG+GGG | - | chr1_4:16040075-16040094 | Msa0152960:intron | 30.0% | |
| GCAAAATATGTTTGGATCAT+GGG | + | chr1_4:16040106-16040125 | None:intergenic | 30.0% | |
| AGCAAAATATGTTTGGATCA+TGG | + | chr1_4:16040107-16040126 | None:intergenic | 30.0% | |
| ! | CATATTTTGCTTCAACAAGT+TGG | - | chr1_4:16040116-16040135 | Msa0152960:intron | 30.0% |
| CAAAAATTTAGGTGGGAAAA+TGG | + | chr1_4:16040194-16040213 | None:intergenic | 30.0% | |
| ! | TAATCCAAGTTGAAACTCAT+TGG | - | chr1_4:16040265-16040284 | Msa0152960:intron | 30.0% |
| AAAACCAATGAGTTTCAACT+TGG | + | chr1_4:16040272-16040291 | None:intergenic | 30.0% | |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_4:16040318-16040337 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_4:16040319-16040338 | Msa0152960:intron | 30.0% |
| ! | ATTTTACACTCAGACTCATT+TGG | + | chr1_4:16040378-16040397 | None:intergenic | 30.0% |
| ! | AGTCTGAGTGTAAAATGTTT+TGG | - | chr1_4:16040382-16040401 | Msa0152960:intron | 30.0% |
| ! | GTCTGAGTGTAAAATGTTTT+GGG | - | chr1_4:16040383-16040402 | Msa0152960:intron | 30.0% |
| AACCAGATTTGTAAACAAGA+AGG | - | chr1_4:16040585-16040604 | Msa0152960:CDS | 30.0% | |
| ACCAGATTTGTAAACAAGAA+GGG | - | chr1_4:16040586-16040605 | Msa0152960:CDS | 30.0% | |
| ! | AAAAAAGCTCTAACAAAGTG+AGG | + | chr1_4:16041026-16041045 | None:intergenic | 30.0% |
| ! | AATTTTGCAGGTAGTAACAA+AGG | - | chr1_4:16041238-16041257 | Msa0152960:intron | 30.0% |
| GTATTCTCTGTTTCAATTCA+TGG | + | chr1_4:16041442-16041461 | None:intergenic | 30.0% | |
| AATACTTGAACGAGTTCAAA+GGG | - | chr1_4:16041480-16041499 | Msa0152960:intron | 30.0% | |
| AACAGAAGTTCTATTGTGAA+TGG | - | chr1_4:16041566-16041585 | Msa0152960:intron | 30.0% | |
| TGGTTGGAATTTATTTACCA+AGG | - | chr1_4:16041589-16041608 | Msa0152960:intron | 30.0% | |
| ! | AAGGAAAATAACTTGCAAGT+CGG | - | chr1_4:16041608-16041627 | Msa0152960:intron | 30.0% |
| ACTCACGAAGTTGAATAGTT+TGG | + | chr1_4:16039419-16039438 | None:intergenic | 35.0% | |
| ! | AAAAGAAACGGTACTTGTTG+AGG | + | chr1_4:16039522-16039541 | None:intergenic | 35.0% |
| !! | CTTTGTTAGTTTGTTTGGTG+AGG | + | chr1_4:16039549-16039568 | None:intergenic | 35.0% |
| !!! | CTTGAGAGGGTTATTTTTCA+GGG | + | chr1_4:16039590-16039609 | None:intergenic | 35.0% |
| TGTACAATGAAATGGTCTAG+TGG | + | chr1_4:16039655-16039674 | None:intergenic | 35.0% | |
| GCTCATGTTTATAGCTTCTA+GGG | - | chr1_4:16039712-16039731 | Msa0152960:intron | 35.0% | |
| CTCATGTTTATAGCTTCTAG+GGG | - | chr1_4:16039713-16039732 | Msa0152960:intron | 35.0% | |
| !! | AGTGTTGATTCTCTCATTAG+TGG | - | chr1_4:16039742-16039761 | Msa0152960:intron | 35.0% |
| CATACATTGTTCTTGACAAC+CGG | - | chr1_4:16039952-16039971 | Msa0152960:intron | 35.0% | |
| TCGGTGACAAAAATTTAGGT+GGG | + | chr1_4:16040201-16040220 | None:intergenic | 35.0% | |
| TTCGGTGACAAAAATTTAGG+TGG | + | chr1_4:16040202-16040221 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGGGATAT+TGG | + | chr1_4:16040360-16040379 | None:intergenic | 35.0% | |
| AGACTCATTTGGAAGTCTAA+GGG | + | chr1_4:16040367-16040386 | None:intergenic | 35.0% | |
| ! | TCCCTTCTTGTTTACAAATC+TGG | + | chr1_4:16040590-16040609 | None:intergenic | 35.0% |
| ! | TTGACACAATTTTATGCCCA+AGG | - | chr1_4:16041349-16041368 | Msa0152960:intron | 35.0% |
| GAATACTTGAACGAGTTCAA+AGG | - | chr1_4:16041479-16041498 | Msa0152960:intron | 35.0% | |
| TGATGAAGATAGAACTTGGA+AGG | - | chr1_4:16041520-16041539 | Msa0152960:intron | 35.0% | |
| AGAAGTTCTATTGTGAATGG+TGG | - | chr1_4:16041569-16041588 | Msa0152960:intron | 35.0% | |
| !! | GACTTGCAAGTTATTTTCCT+TGG | + | chr1_4:16041609-16041628 | None:intergenic | 35.0% |
| TCAAGCCCTAAAAAATTGCA+AGG | - | chr1_4:16041707-16041726 | Msa0152960:CDS | 35.0% | |
| ACTCACGAAGTTGAATAGTT+TGG | + | chr1_4:16039419-16039438 | None:intergenic | 35.0% | |
| ! | AAAAGAAACGGTACTTGTTG+AGG | + | chr1_4:16039522-16039541 | None:intergenic | 35.0% |
| !! | CTTTGTTAGTTTGTTTGGTG+AGG | + | chr1_4:16039549-16039568 | None:intergenic | 35.0% |
| !!! | CTTGAGAGGGTTATTTTTCA+GGG | + | chr1_4:16039590-16039609 | None:intergenic | 35.0% |
| TGTACAATGAAATGGTCTAG+TGG | + | chr1_4:16039655-16039674 | None:intergenic | 35.0% | |
| GCTCATGTTTATAGCTTCTA+GGG | - | chr1_4:16039712-16039731 | Msa0152960:intron | 35.0% | |
| CTCATGTTTATAGCTTCTAG+GGG | - | chr1_4:16039713-16039732 | Msa0152960:intron | 35.0% | |
| !! | AGTGTTGATTCTCTCATTAG+TGG | - | chr1_4:16039742-16039761 | Msa0152960:intron | 35.0% |
| CATACATTGTTCTTGACAAC+CGG | - | chr1_4:16039952-16039971 | Msa0152960:intron | 35.0% | |
| TCGGTGACAAAAATTTAGGT+GGG | + | chr1_4:16040201-16040220 | None:intergenic | 35.0% | |
| TTCGGTGACAAAAATTTAGG+TGG | + | chr1_4:16040202-16040221 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGGGATAT+TGG | + | chr1_4:16040360-16040379 | None:intergenic | 35.0% | |
| AGACTCATTTGGAAGTCTAA+GGG | + | chr1_4:16040367-16040386 | None:intergenic | 35.0% | |
| ! | TCCCTTCTTGTTTACAAATC+TGG | + | chr1_4:16040590-16040609 | None:intergenic | 35.0% |
| ! | TTGACACAATTTTATGCCCA+AGG | - | chr1_4:16041349-16041368 | Msa0152960:intron | 35.0% |
| GAATACTTGAACGAGTTCAA+AGG | - | chr1_4:16041479-16041498 | Msa0152960:intron | 35.0% | |
| TGATGAAGATAGAACTTGGA+AGG | - | chr1_4:16041520-16041539 | Msa0152960:intron | 35.0% | |
| AGAAGTTCTATTGTGAATGG+TGG | - | chr1_4:16041569-16041588 | Msa0152960:intron | 35.0% | |
| !! | GACTTGCAAGTTATTTTCCT+TGG | + | chr1_4:16041609-16041628 | None:intergenic | 35.0% |
| TCAAGCCCTAAAAAATTGCA+AGG | - | chr1_4:16041707-16041726 | Msa0152960:CDS | 35.0% | |
| TTCCCTTATCATGACTTCCA+CGG | + | chr1_4:16039386-16039405 | None:intergenic | 40.0% | |
| ! | TGAGTGTTCTTACTAGCTCT+TGG | + | chr1_4:16039449-16039468 | None:intergenic | 40.0% |
| !!! | GCTTGAGAGGGTTATTTTTC+AGG | + | chr1_4:16039591-16039610 | None:intergenic | 40.0% |
| GGCTCATGTTTATAGCTTCT+AGG | - | chr1_4:16039711-16039730 | Msa0152960:intron | 40.0% | |
| GTAAAGCCACTAAAGCCTTT+AGG | - | chr1_4:16039815-16039834 | Msa0152960:CDS | 40.0% | |
| ! | ATTTTTGCTGGCAGACCTAA+AGG | + | chr1_4:16039833-16039852 | None:intergenic | 40.0% |
| TTTAGGTCTGCCAGCAAAAA+TGG | - | chr1_4:16039832-16039851 | Msa0152960:CDS | 40.0% | |
| TTAGGTCTGCCAGCAAAAAT+GGG | - | chr1_4:16039833-16039852 | Msa0152960:CDS | 40.0% | |
| ACCTAAGCAAGCTAGATATG+TGG | + | chr1_4:16040044-16040063 | None:intergenic | 40.0% | |
| CAGACTCATTTGGAAGTCTA+AGG | + | chr1_4:16040368-16040387 | None:intergenic | 40.0% | |
| !! | AAAATGTTTTGGGCACAACG+TGG | - | chr1_4:16040393-16040412 | Msa0152960:intron | 40.0% |
| ! | CACAACGTGGTGATGATATT+TGG | - | chr1_4:16040406-16040425 | Msa0152960:intron | 40.0% |
| TGTAAACAAGAAGGGAGTGA+TGG | - | chr1_4:16040594-16040613 | Msa0152960:intron | 40.0% | |
| GCAGGAGTAGCAATATCAAT+CGG | + | chr1_4:16040639-16040658 | None:intergenic | 40.0% | |
| TCAAGCCAACAAAAAGTCTC+AGG | - | chr1_4:16040708-16040727 | Msa0152960:CDS | 40.0% | |
| ! | ACTTGCCTGAGACTTTTTGT+TGG | + | chr1_4:16040716-16040735 | None:intergenic | 40.0% |
| TTTGCAGGTAGTAACAAAGG+AGG | - | chr1_4:16041241-16041260 | Msa0152960:intron | 40.0% | |
| TCAAAGGGATTGCAAGCATT+AGG | - | chr1_4:16041495-16041514 | Msa0152960:intron | 40.0% | |
| CAAAGGGATTGCAAGCATTA+GGG | - | chr1_4:16041496-16041515 | Msa0152960:intron | 40.0% | |
| !! | GGGTTGATGAAGATAGAACT+TGG | - | chr1_4:16041516-16041535 | Msa0152960:intron | 40.0% |
| GTTCTATTGTGAATGGTGGT+TGG | - | chr1_4:16041573-16041592 | Msa0152960:intron | 40.0% | |
| TTCCCTTATCATGACTTCCA+CGG | + | chr1_4:16039386-16039405 | None:intergenic | 40.0% | |
| ! | TGAGTGTTCTTACTAGCTCT+TGG | + | chr1_4:16039449-16039468 | None:intergenic | 40.0% |
| !!! | GCTTGAGAGGGTTATTTTTC+AGG | + | chr1_4:16039591-16039610 | None:intergenic | 40.0% |
| GGCTCATGTTTATAGCTTCT+AGG | - | chr1_4:16039711-16039730 | Msa0152960:intron | 40.0% | |
| GTAAAGCCACTAAAGCCTTT+AGG | - | chr1_4:16039815-16039834 | Msa0152960:CDS | 40.0% | |
| ! | ATTTTTGCTGGCAGACCTAA+AGG | + | chr1_4:16039833-16039852 | None:intergenic | 40.0% |
| TTTAGGTCTGCCAGCAAAAA+TGG | - | chr1_4:16039832-16039851 | Msa0152960:CDS | 40.0% | |
| TTAGGTCTGCCAGCAAAAAT+GGG | - | chr1_4:16039833-16039852 | Msa0152960:CDS | 40.0% | |
| ACCTAAGCAAGCTAGATATG+TGG | + | chr1_4:16040044-16040063 | None:intergenic | 40.0% | |
| CAGACTCATTTGGAAGTCTA+AGG | + | chr1_4:16040368-16040387 | None:intergenic | 40.0% | |
| !! | AAAATGTTTTGGGCACAACG+TGG | - | chr1_4:16040393-16040412 | Msa0152960:intron | 40.0% |
| ! | CACAACGTGGTGATGATATT+TGG | - | chr1_4:16040406-16040425 | Msa0152960:intron | 40.0% |
| TGTAAACAAGAAGGGAGTGA+TGG | - | chr1_4:16040594-16040613 | Msa0152960:intron | 40.0% | |
| GCAGGAGTAGCAATATCAAT+CGG | + | chr1_4:16040639-16040658 | None:intergenic | 40.0% | |
| TCAAGCCAACAAAAAGTCTC+AGG | - | chr1_4:16040708-16040727 | Msa0152960:CDS | 40.0% | |
| ! | ACTTGCCTGAGACTTTTTGT+TGG | + | chr1_4:16040716-16040735 | None:intergenic | 40.0% |
| TTTGCAGGTAGTAACAAAGG+AGG | - | chr1_4:16041241-16041260 | Msa0152960:intron | 40.0% | |
| TCAAAGGGATTGCAAGCATT+AGG | - | chr1_4:16041495-16041514 | Msa0152960:intron | 40.0% | |
| CAAAGGGATTGCAAGCATTA+GGG | - | chr1_4:16041496-16041515 | Msa0152960:intron | 40.0% | |
| !! | GGGTTGATGAAGATAGAACT+TGG | - | chr1_4:16041516-16041535 | Msa0152960:intron | 40.0% |
| GTTCTATTGTGAATGGTGGT+TGG | - | chr1_4:16041573-16041592 | Msa0152960:intron | 40.0% | |
| ! | AATGGTGGTGTGCTGTTGAA+GGG | + | chr1_4:16039355-16039374 | None:intergenic | 45.0% |
| ! | GAAACGGTACTTGTTGAGGA+TGG | + | chr1_4:16039518-16039537 | None:intergenic | 45.0% |
| !! | GCCACATATCTAGCTTGCTT+AGG | - | chr1_4:16040040-16040059 | Msa0152960:intron | 45.0% |
| TGTGCATGCAGATGATACCA+AGG | - | chr1_4:16040298-16040317 | Msa0152960:intron | 45.0% | |
| ! | CAAAGGAGGCATGACTAAGA+AGG | - | chr1_4:16041255-16041274 | Msa0152960:intron | 45.0% |
| TTCTATTTCCCGAGCTAGAG+AGG | - | chr1_4:16041682-16041701 | Msa0152960:intron | 45.0% | |
| ! | AATGGTGGTGTGCTGTTGAA+GGG | + | chr1_4:16039355-16039374 | None:intergenic | 45.0% |
| ! | GAAACGGTACTTGTTGAGGA+TGG | + | chr1_4:16039518-16039537 | None:intergenic | 45.0% |
| !! | GCCACATATCTAGCTTGCTT+AGG | - | chr1_4:16040040-16040059 | Msa0152960:intron | 45.0% |
| TGTGCATGCAGATGATACCA+AGG | - | chr1_4:16040298-16040317 | Msa0152960:intron | 45.0% | |
| ! | CAAAGGAGGCATGACTAAGA+AGG | - | chr1_4:16041255-16041274 | Msa0152960:intron | 45.0% |
| TTCTATTTCCCGAGCTAGAG+AGG | - | chr1_4:16041682-16041701 | Msa0152960:intron | 45.0% | |
| ! | GAATGGTGGTGTGCTGTTGA+AGG | + | chr1_4:16039356-16039375 | None:intergenic | 50.0% |
| TATCATGACTTCCACGGCCA+TGG | + | chr1_4:16039380-16039399 | None:intergenic | 50.0% | |
| TGGCCGTGGAAGTCATGATA+AGG | - | chr1_4:16039380-16039399 | Msa0152960:CDS | 50.0% | |
| GGCCGTGGAAGTCATGATAA+GGG | - | chr1_4:16039381-16039400 | Msa0152960:CDS | 50.0% | |
| ! | TAGTGGCTTTACCCTCGAGT+CGG | + | chr1_4:16039807-16039826 | None:intergenic | 50.0% |
| ! | GGCAGACCTAAAGGCTTTAG+TGG | + | chr1_4:16039824-16039843 | None:intergenic | 50.0% |
| TTTGCACGGTCGCTTAGATG+TGG | - | chr1_4:16040447-16040466 | Msa0152960:CDS | 50.0% | |
| ACTCCTGCTGCTACACTTCA+AGG | - | chr1_4:16040651-16040670 | Msa0152960:CDS | 50.0% | |
| CTCCTGCTGCTACACTTCAA+GGG | - | chr1_4:16040652-16040671 | Msa0152960:CDS | 50.0% | |
| ! | GCTTGATTCCTCTCTAGCTC+GGG | + | chr1_4:16041693-16041712 | None:intergenic | 50.0% |
| GGCTTGATTCCTCTCTAGCT+CGG | + | chr1_4:16041694-16041713 | None:intergenic | 50.0% | |
| ! | GAATGGTGGTGTGCTGTTGA+AGG | + | chr1_4:16039356-16039375 | None:intergenic | 50.0% |
| TATCATGACTTCCACGGCCA+TGG | + | chr1_4:16039380-16039399 | None:intergenic | 50.0% | |
| TGGCCGTGGAAGTCATGATA+AGG | - | chr1_4:16039380-16039399 | Msa0152960:CDS | 50.0% | |
| GGCCGTGGAAGTCATGATAA+GGG | - | chr1_4:16039381-16039400 | Msa0152960:CDS | 50.0% | |
| ! | TAGTGGCTTTACCCTCGAGT+CGG | + | chr1_4:16039807-16039826 | None:intergenic | 50.0% |
| ! | GGCAGACCTAAAGGCTTTAG+TGG | + | chr1_4:16039824-16039843 | None:intergenic | 50.0% |
| TTTGCACGGTCGCTTAGATG+TGG | - | chr1_4:16040447-16040466 | Msa0152960:CDS | 50.0% | |
| ACTCCTGCTGCTACACTTCA+AGG | - | chr1_4:16040651-16040670 | Msa0152960:CDS | 50.0% | |
| CTCCTGCTGCTACACTTCAA+GGG | - | chr1_4:16040652-16040671 | Msa0152960:CDS | 50.0% | |
| ! | GCTTGATTCCTCTCTAGCTC+GGG | + | chr1_4:16041693-16041712 | None:intergenic | 50.0% |
| GGCTTGATTCCTCTCTAGCT+CGG | + | chr1_4:16041694-16041713 | None:intergenic | 50.0% | |
| CAGCACACCACCATTCACCA+TGG | - | chr1_4:16039360-16039379 | Msa0152960:CDS | 55.0% | |
| ACTTCCACGGCCATGGTGAA+TGG | + | chr1_4:16039373-16039392 | None:intergenic | 55.0% | |
| !! | AAATCATCAGGGCCGACTCG+AGG | - | chr1_4:16039792-16039811 | Msa0152960:CDS | 55.0% |
| !! | AATCATCAGGGCCGACTCGA+GGG | - | chr1_4:16039793-16039812 | Msa0152960:CDS | 55.0% |
| GTCCCTTGAAGTGTAGCAGC+AGG | + | chr1_4:16040657-16040676 | None:intergenic | 55.0% | |
| CAGCACACCACCATTCACCA+TGG | - | chr1_4:16039360-16039379 | Msa0152960:CDS | 55.0% | |
| ACTTCCACGGCCATGGTGAA+TGG | + | chr1_4:16039373-16039392 | None:intergenic | 55.0% | |
| !! | AAATCATCAGGGCCGACTCG+AGG | - | chr1_4:16039792-16039811 | Msa0152960:CDS | 55.0% |
| !! | AATCATCAGGGCCGACTCGA+GGG | - | chr1_4:16039793-16039812 | Msa0152960:CDS | 55.0% |
| GTCCCTTGAAGTGTAGCAGC+AGG | + | chr1_4:16040657-16040676 | None:intergenic | 55.0% | |
| ACCACCATTCACCATGGCCG+TGG | - | chr1_4:16039366-16039385 | Msa0152960:CDS | 60.0% | |
| TCCACGGCCATGGTGAATGG+TGG | + | chr1_4:16039370-16039389 | None:intergenic | 60.0% | |
| ACCACCATTCACCATGGCCG+TGG | - | chr1_4:16039366-16039385 | Msa0152960:CDS | 60.0% | |
| TCCACGGCCATGGTGAATGG+TGG | + | chr1_4:16039370-16039389 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16039348 | 16041799 | 16039348 | ID=Msa0152960;Name=Msa0152960 |
| chr1_4 | mRNA | 16039348 | 16041799 | 16039348 | ID=Msa0152960-mRNA-1;Parent=Msa0152960;Name=Msa0152960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.5|0.4|5|0|320 |
| chr1_4 | exon | 16041692 | 16041799 | 16041692 | ID=Msa0152960-mRNA-1:exon:6185;Parent=Msa0152960-mRNA-1 |
| chr1_4 | exon | 16040616 | 16040838 | 16040616 | ID=Msa0152960-mRNA-1:exon:6184;Parent=Msa0152960-mRNA-1 |
| chr1_4 | exon | 16040425 | 16040606 | 16040425 | ID=Msa0152960-mRNA-1:exon:6183;Parent=Msa0152960-mRNA-1 |
| chr1_4 | exon | 16039766 | 16039870 | 16039766 | ID=Msa0152960-mRNA-1:exon:6182;Parent=Msa0152960-mRNA-1 |
| chr1_4 | exon | 16039348 | 16039692 | 16039348 | ID=Msa0152960-mRNA-1:exon:6181;Parent=Msa0152960-mRNA-1 |
| chr1_4 | CDS | 16041692 | 16041799 | 16041692 | ID=Msa0152960-mRNA-1:cds;Parent=Msa0152960-mRNA-1 |
| chr1_4 | CDS | 16040616 | 16040838 | 16040616 | ID=Msa0152960-mRNA-1:cds;Parent=Msa0152960-mRNA-1 |
| chr1_4 | CDS | 16040425 | 16040606 | 16040425 | ID=Msa0152960-mRNA-1:cds;Parent=Msa0152960-mRNA-1 |
| chr1_4 | CDS | 16039766 | 16039870 | 16039766 | ID=Msa0152960-mRNA-1:cds;Parent=Msa0152960-mRNA-1 |
| chr1_4 | CDS | 16039348 | 16039692 | 16039348 | ID=Msa0152960-mRNA-1:cds;Parent=Msa0152960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
