AlfalfaGEDB | Msa0153050

M. sativa cultivar zhongmu-4 / Msa0153050

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153050	sp\|Q8L3W1\|VRN1_ARATH	50.442	113	51	3	74	183	21	131	5.69e-25	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153050	A0A072VGN2	59.524	252	49	1	4	255	5	203	2.12e-92	298

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TFs/TRs:

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Gene ID	Type	Classification
Msa0153050	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153050	MtrunA17_Chr1g0162411	59.524	252	49	1	4	255	5	203	1.04e-94	298
Msa0153050	MtrunA17_Chr5g0422121	46.301	365	49	5	417	634	652	1016	1.79e-73	257
Msa0153050	MtrunA17_Chr5g0422121	49.510	204	90	2	230	420	328	531	4.63e-48	182
Msa0153050	MtrunA17_Chr4g0027911	36.501	463	164	8	242	633	82	485	2.07e-72	249
Msa0153050	MtrunA17_Chr6g0478941	41.644	365	66	5	417	634	303	667	1.41e-68	240
Msa0153050	MtrunA17_Chr6g0478941	42.593	162	51	2	301	420	5	166	9.76e-26	113
Msa0153050	MtrunA17_Chr1g0170491	41.370	365	67	5	417	634	678	1042	2.71e-68	241
Msa0153050	MtrunA17_Chr1g0170491	39.819	221	91	2	242	420	321	541	2.77e-39	155
Msa0153050	MtrunA17_Chr4g0053141	41.370	365	67	5	417	634	678	1042	6.09e-68	241
Msa0153050	MtrunA17_Chr4g0053141	39.819	221	91	2	242	420	321	541	3.40e-39	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153050	AT3G18990.1	50.442	113	51	3	74	183	21	131	5.78e-26	110
Msa0153050	AT3G18990.2	50.442	113	51	3	74	183	21	131	1.40e-25	109
Msa0153050	AT4G01580.1	39.744	78	47	0	74	151	45	122	1.65e-12	67.0
Msa0153050	AT3G18960.3	36.471	85	54	0	67	151	1	85	5.29e-12	65.1
Msa0153050	AT3G18960.2	40.000	75	45	0	74	148	45	119	1.42e-11	64.3
Msa0153050	AT3G18960.1	40.000	75	45	0	74	148	45	119	1.53e-11	64.7

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Find 146 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTCTATGAACCTC+CGG	0.497959	1_4:+16134706	None:intergenic
AAAATCTTCCTCTTAAGTTT+GGG	0.333148	1_4:+16133944	None:intergenic
AAAGTCGGAGGAGGAGCATG+CGG	0.640137	1_4:-16134946	Msa0153050:CDS
AAATAGGATTACAGATTTGA+TGG	0.357812	1_4:+16136263	None:intergenic
AACCCTACTGGAGCATTGCA+AGG	0.577669	1_4:-16136187	Msa0153050:CDS
AACCCTTCAATCTAAGCAAT+TGG	0.424880	1_4:-16138222	Msa0153050:intron
AACTCCACTTCTCTCTCAAG+CGG	0.589079	1_4:+16135479	None:intergenic
AAGGCAGAAGGATCCAGTCA+CGG	0.615665	1_4:+16137128	None:intergenic
AAGTTGTGGCGTATGCTTCA+TGG	0.460409	1_4:-16134479	Msa0153050:CDS
AATAGTCTATCTCAGCAGTA+CGG	0.595590	1_4:+16136320	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACCAATTGCTTAGATTGAA+GGG	+	chr1_4:16133962-16133981	None:intergenic	30.0%
TTACCAATTGCTTAGATTGA+AGG	+	chr1_4:16133963-16133982	None:intergenic	30.0%
CTTTATGAAAAGGGGAATTA+GGG	+	chr1_4:16134094-16134113	None:intergenic	30.0%
TCTTTATGAAAAGGGGAATT+AGG	+	chr1_4:16134095-16134114	None:intergenic	30.0%
TAAACTGAACGAAAGATCAT+GGG	+	chr1_4:16134223-16134242	None:intergenic	30.0%
TTGATAGAATTTACGCTCTT+GGG	-	chr1_4:16134599-16134618	Msa0153050:intron	30.0%
AAGTCCAAGTAGAATTTCAT+AGG	+	chr1_4:16134678-16134697	None:intergenic	30.0%
ACGAATCTCCATATTCATAA+TGG	-	chr1_4:16134790-16134809	Msa0153050:intron	30.0%
TGTGCTTGTGTGTTAATATT+GGG	-	chr1_4:16134867-16134886	Msa0153050:CDS	30.0%
AAAGATTTCTTAGTGAGAAG+AGG	+	chr1_4:16134978-16134997	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	16133919	16138282	16133919	ID=Msa0153050;Name=Msa0153050
chr1_4	mRNA	16133919	16138282	16133919	ID=Msa0153050-mRNA-1;Parent=Msa0153050;Name=Msa0153050-mRNA-1;_AED=0.82;_eAED=0.82;_QI=0\|0\|0\|0.11\|1\|1\|9\|0\|634
chr1_4	exon	16138223	16138282	16138223	ID=Msa0153050-mRNA-1:exon:6227;Parent=Msa0153050-mRNA-1
chr1_4	exon	16137032	16137190	16137032	ID=Msa0153050-mRNA-1:exon:6226;Parent=Msa0153050-mRNA-1
chr1_4	exon	16135760	16136566	16135760	ID=Msa0153050-mRNA-1:exon:6225;Parent=Msa0153050-mRNA-1
chr1_4	exon	16135408	16135633	16135408	ID=Msa0153050-mRNA-1:exon:6224;Parent=Msa0153050-mRNA-1
chr1_4	exon	16134863	16134987	16134863	ID=Msa0153050-mRNA-1:exon:6223;Parent=Msa0153050-mRNA-1
chr1_4	exon	16134662	16134787	16134662	ID=Msa0153050-mRNA-1:exon:6222;Parent=Msa0153050-mRNA-1
chr1_4	exon	16134420	16134508	16134420	ID=Msa0153050-mRNA-1:exon:6221;Parent=Msa0153050-mRNA-1
chr1_4	exon	16134119	16134309	16134119	ID=Msa0153050-mRNA-1:exon:6220;Parent=Msa0153050-mRNA-1
chr1_4	exon	16133919	16134040	16133919	ID=Msa0153050-mRNA-1:exon:6219;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16138223	16138282	16138223	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16137032	16137190	16137032	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16135760	16136566	16135760	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16135408	16135633	16135408	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16134863	16134987	16134863	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16134662	16134787	16134662	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16134420	16134508	16134420	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16134119	16134309	16134119	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1
chr1_4	CDS	16133919	16134040	16133919	ID=Msa0153050-mRNA-1:cds;Parent=Msa0153050-mRNA-1

Gene Sequence

>Msa0153050

ATGCCTAGTCCTTCTTTTAACAAGCTCATTCTTCCAACAACCCTTCAATCTAAGCAATTGAGAACCCTTTCTTCATGCCTTGTGATCGGATCCTTTCTTCCCGTGACTGGATCCTTCTGCCTTGCTCTAGAAACTCACCTGTGTTGCATGTTTGTTCTTATGCATGTTGCCTTGCGGCCAGAAATCCTTGGCCGTGATGTTGTGCACAATTCTGCTCCTAGGATTCCAGATAATTTTGTGAGGAAACATGGAGCCCAACTTTCAAATGTCGCAACTGTCACTGTTCCTGGCGGCACAGTCTGGCGTCTAGGATTGAAAAAGGTTGACAACTGTATTTCTTTTGTGGATGGCTGGCAAGATTTTATTGAACGCTACTCAATTGACATTGGATACTTACTAGTATTCACATACGAAGGAAAGTCAAATTTCATCGTTTATATCTTCCGTACTGCTGAGATAGACTATTATTCAACAATGAGGAGCCGGGTTGAAGGGCCTTTCCATCAAATCTGTAATCCTATTTTTGAAGGCATTGAAGATATCGACTCCTTTGATTTCCTGGATTCAGCACCTTCAAACCCTACTGGAGCATTGCAAGGCAATGATTCTACTGGATGTATGGATCAACTGATACCAGCGGAGAATCATATCCAACAAAGACAAGAAAATCAGGATACCAAGAAAACTTCAAGAAAGAAGTTGAAGATGGAGAAGTCTCATGTGAAGGTGTTTACTTTGAGTGTTGAGGAGGGTGCAGAGCCGGACAACTTGATTAAAGGTATTTGTTTCATTAACAACTCTCATTTTCTTGCTAATATTAATATTGGTGTGACATATTCATTTATTTCTCTTAGTTGTGCTAAACGATTTAATCTAGTTATGTCTCTTATGTTGAAAGGGATGGTCATTGACACCCCAGCCAATGGCTCGGTGACCACATCTTTGGTTTGTTTGAATTACCCATTGAATTTTGGCGATGTAGATTTTAAGATGGATTTAATTTGTTTGCCTTTGGAACAAATGGATGCATCGTTGGGTGAAGAAGCTCAGGTGTTTGTGATGTTTGCTTCATTGAAGGTTGAAAGTGAGACGGGAGTTGGTGATTTTCCGGTAGTGAATGAGTTTCCAGATGTTTTTCGAAATGACATTGTTGACTTACCGCTTGAGAGAGAAGTGGAGTTTATGATTGACTTGTTATCTAGAACTAGTCCTGTATCAACGACACCATATCAGATGTTTGCATCGGAATTAGATGATATATTGGTGTATTCAAAGTCGGAGGAGGAGCATGCGGAGCATTTTAGGATTGTGTTCCAGACCTTGAAGGAAAAGAAGTTGTATGCTAAGTTGTTGAAGTATAAGTTTTGGTTGCATGAATGGCAGGCTCCCAAGTCAGTTTCTAAGATCCGTAATTTTCTTGCTTTGGTGGGTTATTGCCGGAGGTTCATAGAAGGATTTTCTAAGTTATCTTTACCTTTGACGTTGTTGACTCGTAAGGGACAAAATGGTCAAGTTGTGGCGTATGCTTCATGGCAGTTAAAGGTTCATGAAAGGAATTACCCGACCCATGATTTGGAATTGGCGGCAGTTGTGATTAGGACTCTTGAGTTAAATTATTGTCCGGGTAAGGCCAGTGTGGTAACATATGCGTTGAGTAAGAAGTCGTTGCATATGTCGGCACTTATGGTAAAGGAATTGGAGTTGATTGAGCAGTTCATAGATTTAAGTTTGGTGAGCGAGTTGACACCTAGTGGCGTGAAATTAGGAATGTTGAAGTTGACAAGTAAAGAGAAGGACTTTAGAGTGGATGAGAATGGAGTTATGAAGTTTCGTGATCGAGTTTGTGTGCCAGATTTACCCAAACTTAAGAGGAAGATTTTAGAGGAAGATCACCGTAGTAGTTGA

Protein sequence

>Msa0153050

MPSPSFNKLILPTTLQSKQLRTLSSCLVIGSFLPVTGSFCLALETHLCCMFVLMHVALRPEILGRDVVHNSAPRIPDNFVRKHGAQLSNVATVTVPGGTVWRLGLKKVDNCISFVDGWQDFIERYSIDIGYLLVFTYEGKSNFIVYIFRTAEIDYYSTMRSRVEGPFHQICNPIFEGIEDIDSFDFLDSAPSNPTGALQGNDSTGCMDQLIPAENHIQQRQENQDTKKTSRKKLKMEKSHVKVFTLSVEEGAEPDNLIKGICFINNSHFLANINIGVTYSFISLSCAKRFNLVMSLMLKGMVIDTPANGSVTTSLVCLNYPLNFGDVDFKMDLICLPLEQMDASLGEEAQVFVMFASLKVESETGVGDFPVVNEFPDVFRNDIVDLPLEREVEFMIDLLSRTSPVSTTPYQMFASELDDILVYSKSEEEHAEHFRIVFQTLKEKKLYAKLLKYKFWLHEWQAPKSVSKIRNFLALVGYCRRFIEGFSKLSLPLTLLTRKGQNGQVVAYASWQLKVHERNYPTHDLELAAVVIRTLELNYCPGKASVVTYALSKKSLHMSALMVKELELIEQFIDLSLVSELTPSGVKLGMLKLTSKEKDFRVDENGVMKFRDRVCVPDLPKLKRKILEEDHRSS*