Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153220 | AES59941.2 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153220 | sp|Q9FMY5|U2AFB_ARATH | 73.944 | 284 | 64 | 2 | 1 | 277 | 1 | 281 | 6.94e-137 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153220 | G7IA30 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153220 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153220 | MtrunA17_Chr1g0162821 | 100.000 | 279 | 0 | 0 | 1 | 279 | 1 | 279 | 0.0 | 566 |
| Msa0153220 | MtrunA17_Chr2g0320801 | 66.783 | 286 | 86 | 2 | 1 | 278 | 1 | 285 | 2.60e-126 | 362 |
| Msa0153220 | MtrunA17_Chr7g0265751 | 60.656 | 305 | 82 | 5 | 1 | 276 | 1 | 296 | 1.80e-118 | 342 |
| Msa0153220 | MtrunA17_Chr2g0276901 | 37.864 | 103 | 61 | 1 | 73 | 172 | 23 | 125 | 2.96e-19 | 87.4 |
| Msa0153220 | MtrunA17_Chr2g0276891 | 57.143 | 49 | 21 | 0 | 9 | 57 | 184 | 232 | 9.01e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153220 | AT5G42820.1 | 73.944 | 284 | 64 | 2 | 1 | 277 | 1 | 281 | 7.05e-138 | 390 |
| Msa0153220 | AT5G42820.2 | 73.944 | 284 | 64 | 2 | 1 | 277 | 1 | 281 | 7.05e-138 | 390 |
| Msa0153220 | AT1G27650.1 | 68.041 | 291 | 68 | 4 | 1 | 272 | 1 | 285 | 7.19e-125 | 358 |
| Msa0153220 | AT1G27650.2 | 61.411 | 241 | 68 | 4 | 51 | 272 | 1 | 235 | 5.06e-83 | 249 |
| Msa0153220 | AT1G10320.2 | 38.922 | 167 | 97 | 2 | 9 | 172 | 228 | 392 | 1.12e-37 | 141 |
| Msa0153220 | AT1G10320.1 | 38.922 | 167 | 97 | 2 | 9 | 172 | 237 | 401 | 1.38e-37 | 141 |
| Msa0153220 | AT3G44785.1 | 81.481 | 54 | 10 | 0 | 1 | 54 | 1 | 54 | 3.15e-28 | 103 |
Find 85 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAATGTCTGTGATAATT+TGG | 0.193919 | 1_4:+16422678 | Msa0153220:CDS |
| AGAGATGGTGGGAGGAGAAA+TGG | 0.261636 | 1_4:+16423126 | Msa0153220:CDS |
| TGTTGGAGAGGAGGAGAGTT+GGG | 0.288016 | 1_4:-16422516 | None:intergenic |
| TTCACCGAGCTTTCAAAATT+CGG | 0.310907 | 1_4:+16422643 | Msa0153220:CDS |
| GGGAGAGGAAAAGAGATAGT+AGG | 0.314372 | 1_4:+16423100 | Msa0153220:CDS |
| ATAGGGTTAGGGATGGAGAT+AGG | 0.323264 | 1_4:+16423073 | Msa0153220:CDS |
| GAGGAGAGTTGGGGAGATTG+TGG | 0.325267 | 1_4:-16422506 | None:intergenic |
| GTAGTGATAGGGATAGGGTT+AGG | 0.342152 | 1_4:+16423061 | Msa0153220:CDS |
| CGAGGATTGAGCAATGGAAT+AGG | 0.347688 | 1_4:+16423184 | Msa0153220:CDS |
| TTTATGCATGTTAAGAAGAT+TGG | 0.350465 | 1_4:+16422895 | Msa0153220:CDS |
| GAGATGGTGGGAGGAGAAAT+GGG | 0.363627 | 1_4:+16423127 | Msa0153220:CDS |
| GGAGAGGAAAAGAGATAGTA+GGG | 0.386799 | 1_4:+16423101 | Msa0153220:CDS |
| GGATCAATTGGTTGGCCGTT+TGG | 0.393040 | 1_4:-16422577 | None:intergenic |
| TGGCCGTTTGGATCGACGCC+AGG | 0.397087 | 1_4:-16422565 | None:intergenic |
| GGAGAAATGGGAGGGAGGCA+AGG | 0.399845 | 1_4:+16423139 | Msa0153220:CDS |
| AGAAGATTGGTAGGGAGTTG+AGG | 0.400429 | 1_4:+16422908 | Msa0153220:CDS |
| GGGAGATTGTGGGACGGTTG+TGG | 0.404937 | 1_4:-16422495 | None:intergenic |
| AGGAGAGTTGGGGAGATTGT+GGG | 0.405421 | 1_4:-16422505 | None:intergenic |
| GAGAAATGGGAGGGAGGCAA+GGG | 0.407109 | 1_4:+16423140 | Msa0153220:CDS |
| CTGCTTCTTCTTCTCCTCCT+CGG | 0.409481 | 1_4:-16422982 | None:intergenic |
| GCCTCACGAAAATCCGTAAC+AGG | 0.411096 | 1_4:-16422820 | None:intergenic |
| AGAAATCTTCGAAGTGTTGT+TGG | 0.412558 | 1_4:-16422609 | None:intergenic |
| GTGGAAGACGAAGTAGTGAT+AGG | 0.416019 | 1_4:+16423049 | Msa0153220:CDS |
| GATAGTAGGGATAGAGATGG+TGG | 0.425369 | 1_4:+16423114 | Msa0153220:CDS |
| CAAATTATCACAGACATTCA+AGG | 0.426646 | 1_4:-16422677 | None:intergenic |
| CTTCGCAGCGGAGCAGGAGC+CGG | 0.428582 | 1_4:+16422944 | Msa0153220:CDS |
| TAGTGATAGGGATAGGGTTA+GGG | 0.437566 | 1_4:+16423062 | Msa0153220:CDS |
| AGCGGAGCAGGAGCCGGAGC+AGG | 0.446956 | 1_4:+16422950 | Msa0153220:CDS |
| ATGTTGGAGAGGAGGAGAGT+TGG | 0.454313 | 1_4:-16422517 | None:intergenic |
| TGGGAGGAGAAATGGGAGGG+AGG | 0.457003 | 1_4:+16423134 | Msa0153220:CDS |
| TGGATCTGACGCGGATCAAT+TGG | 0.457763 | 1_4:-16422589 | None:intergenic |
| AATTTGGCTGATCATATGAT+TGG | 0.466245 | 1_4:+16422694 | Msa0153220:CDS |
| GAGGATTGAGCAATGGAATA+GGG | 0.468964 | 1_4:+16423185 | Msa0153220:CDS |
| GACGAAGTAGTGATAGGGAT+AGG | 0.484651 | 1_4:+16423055 | Msa0153220:CDS |
| ACGCCAGGGGTGATGATGTC+GGG | 0.488561 | 1_4:-16422550 | None:intergenic |
| AATGGGAGGGAGGCAAGGGA+AGG | 0.490864 | 1_4:+16423144 | Msa0153220:CDS |
| GGCCGTTTGGATCGACGCCA+GGG | 0.493815 | 1_4:-16422564 | None:intergenic |
| TTAGGGATGGAGATAGGGAT+AGG | 0.502553 | 1_4:+16423079 | Msa0153220:CDS |
| ACGAAGTAGTGATAGGGATA+GGG | 0.505580 | 1_4:+16423056 | Msa0153220:CDS |
| TCGGACTATTACTCCTGCTC+CGG | 0.509383 | 1_4:-16422963 | None:intergenic |
| TAGGGTTAGGGATGGAGATA+GGG | 0.510727 | 1_4:+16423074 | Msa0153220:CDS |
| GGAGGCAAGGGAAGGAAGCG+AGG | 0.519892 | 1_4:+16423152 | Msa0153220:CDS |
| GTTGGAGAGGAGGAGAGTTG+GGG | 0.525720 | 1_4:-16422515 | None:intergenic |
| AGAGATAGTAGGGATAGAGA+TGG | 0.530986 | 1_4:+16423111 | Msa0153220:CDS |
| CAAGGGAAGGAAGCGAGGAA+AGG | 0.534933 | 1_4:+16423157 | Msa0153220:CDS |
| GGCGACTTGTCGACAGTATG+AGG | 0.537251 | 1_4:+16422840 | Msa0153220:CDS |
| GCGGCGTTAGCGAGTTTGAG+AGG | 0.538412 | 1_4:+16422757 | Msa0153220:CDS |
| TGCATGTTAAGAAGATTGGT+AGG | 0.545724 | 1_4:+16422899 | Msa0153220:CDS |
| ATGGAGATAGGGATAGGGAG+AGG | 0.548603 | 1_4:+16423085 | Msa0153220:CDS |
| TGTCCTTTCTACTTCAAGAT+CGG | 0.549363 | 1_4:+16422439 | Msa0153220:CDS |
| ACCCCTGGCGTCGATCCAAA+CGG | 0.553037 | 1_4:+16422562 | Msa0153220:CDS |
| TAGGGATGGAGATAGGGATA+GGG | 0.557714 | 1_4:+16423080 | Msa0153220:CDS |
| AAGATCGGCGCGTGTCGTCA+CGG | 0.559187 | 1_4:+16422454 | Msa0153220:CDS |
| GATAGGGATAGGGTTAGGGA+TGG | 0.561282 | 1_4:+16423066 | Msa0153220:CDS |
| GCGCCGATCTTGAAGTAGAA+AGG | 0.567091 | 1_4:-16422442 | None:intergenic |
| TGGAAGACGAAGTAGTGATA+GGG | 0.570881 | 1_4:+16423050 | Msa0153220:CDS |
| AGATTGGTAGGGAGTTGAGG+AGG | 0.577482 | 1_4:+16422911 | Msa0153220:CDS |
| ATAGTAGGGATAGAGATGGT+GGG | 0.578568 | 1_4:+16423115 | Msa0153220:CDS |
| CGTTAGCGAGTTTGAGAGGG+AGG | 0.578892 | 1_4:+16422761 | Msa0153220:CDS |
| GACGCCAGGGGTGATGATGT+CGG | 0.579005 | 1_4:-16422551 | None:intergenic |
| TGGTGGGAGGAGAAATGGGA+GGG | 0.582282 | 1_4:+16423131 | Msa0153220:CDS |
| CGGCGTTAGCGAGTTTGAGA+GGG | 0.582628 | 1_4:+16422758 | Msa0153220:CDS |
| CGTCCCGACATCATCACCCC+TGG | 0.587610 | 1_4:+16422547 | Msa0153220:CDS |
| GAAGCGAGGAAAGGCGAGCG+AGG | 0.588613 | 1_4:+16423166 | Msa0153220:CDS |
| GCATGTTAAGAAGATTGGTA+GGG | 0.590056 | 1_4:+16422900 | Msa0153220:CDS |
| GGCGAGCGAGGATTGAGCAA+TGG | 0.594879 | 1_4:+16423178 | Msa0153220:CDS |
| TCTGACGCGGATCAATTGGT+TGG | 0.596325 | 1_4:-16422585 | None:intergenic |
| GCCGTTTGGATCGACGCCAG+GGG | 0.623356 | 1_4:-16422563 | None:intergenic |
| GACGTTGGTACATGTTGGAG+AGG | 0.624648 | 1_4:-16422528 | None:intergenic |
| GAGGAGAATAGCTGTAATCG+TGG | 0.625598 | 1_4:+16422859 | Msa0153220:CDS |
| ATGGTGGGAGGAGAAATGGG+AGG | 0.633559 | 1_4:+16423130 | Msa0153220:CDS |
| AGAGGAGGATCATGCTGCGG+CGG | 0.637001 | 1_4:+16422738 | Msa0153220:CDS |
| GTTGGTACATGTTGGAGAGG+AGG | 0.641509 | 1_4:-16422525 | None:intergenic |
| GTCGGGACGTTGGTACATGT+TGG | 0.644753 | 1_4:-16422533 | None:intergenic |
| GTAGGGATAGAGATGGTGGG+AGG | 0.649876 | 1_4:+16423118 | Msa0153220:CDS |
| AAGTGTTGTTGGATCTGACG+CGG | 0.652115 | 1_4:-16422598 | None:intergenic |
| GATAGAGATTATGATTCGCG+TGG | 0.653513 | 1_4:+16423030 | Msa0153220:CDS |
| GGAGCAGGAGTAATAGTCCG+AGG | 0.660385 | 1_4:+16422965 | Msa0153220:CDS |
| TAAAGAGGAGGATCATGCTG+CGG | 0.665212 | 1_4:+16422735 | Msa0153220:CDS |
| GGGTGATGATGTCGGGACGT+TGG | 0.676367 | 1_4:-16422543 | None:intergenic |
| GAGTTGGGGAGATTGTGGGA+CGG | 0.682417 | 1_4:-16422501 | None:intergenic |
| GGTTGTGGAGACGAGAGCAA+CGG | 0.683538 | 1_4:-16422480 | None:intergenic |
| GAGAATAGCTGTAATCGTGG+TGG | 0.695229 | 1_4:+16422862 | Msa0153220:CDS |
| GCAGGAGTAATAGTCCGAGG+AGG | 0.699313 | 1_4:+16422968 | Msa0153220:CDS |
| GAATCATAATCTCTATCACG+CGG | 0.759540 | 1_4:-16423024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTATGTGCTTTTTAAAG+AGG | + | chr1_4:16422720-16422739 | Msa0153220:CDS | 25.0% |
| ! | TTTATGCATGTTAAGAAGAT+TGG | + | chr1_4:16422895-16422914 | Msa0153220:CDS | 25.0% |
| !!! | TGTTTATGTGCTTTTTAAAG+AGG | + | chr1_4:16422720-16422739 | Msa0153220:CDS | 25.0% |
| ! | TTTATGCATGTTAAGAAGAT+TGG | + | chr1_4:16422895-16422914 | Msa0153220:CDS | 25.0% |
| ! | GAACACTTAGCATCAATTTT+CGG | + | chr1_4:16422394-16422413 | Msa0153220:CDS | 30.0% |
| CAAATTATCACAGACATTCA+AGG | - | chr1_4:16422680-16422699 | None:intergenic | 30.0% | |
| CTTGAATGTCTGTGATAATT+TGG | + | chr1_4:16422678-16422697 | Msa0153220:CDS | 30.0% | |
| AATTTGGCTGATCATATGAT+TGG | + | chr1_4:16422694-16422713 | Msa0153220:CDS | 30.0% | |
| !! | TTATGTGCTTTTTAAAGAGG+AGG | + | chr1_4:16422723-16422742 | Msa0153220:CDS | 30.0% |
| ! | GAACACTTAGCATCAATTTT+CGG | + | chr1_4:16422394-16422413 | Msa0153220:CDS | 30.0% |
| CAAATTATCACAGACATTCA+AGG | - | chr1_4:16422680-16422699 | None:intergenic | 30.0% | |
| CTTGAATGTCTGTGATAATT+TGG | + | chr1_4:16422678-16422697 | Msa0153220:CDS | 30.0% | |
| AATTTGGCTGATCATATGAT+TGG | + | chr1_4:16422694-16422713 | Msa0153220:CDS | 30.0% | |
| !! | TTATGTGCTTTTTAAAGAGG+AGG | + | chr1_4:16422723-16422742 | Msa0153220:CDS | 30.0% |
| TGTCCTTTCTACTTCAAGAT+CGG | + | chr1_4:16422439-16422458 | Msa0153220:CDS | 35.0% | |
| !! | AGAAATCTTCGAAGTGTTGT+TGG | - | chr1_4:16422612-16422631 | None:intergenic | 35.0% |
| TTCACCGAGCTTTCAAAATT+CGG | + | chr1_4:16422643-16422662 | Msa0153220:CDS | 35.0% | |
| !! | GTAACCGAATTTTGAAAGCT+CGG | - | chr1_4:16422650-16422669 | None:intergenic | 35.0% |
| GGAGAAAAATCCGCTAAAAT+CGG | - | chr1_4:16422802-16422821 | None:intergenic | 35.0% | |
| TGCATGTTAAGAAGATTGGT+AGG | + | chr1_4:16422899-16422918 | Msa0153220:CDS | 35.0% | |
| GCATGTTAAGAAGATTGGTA+GGG | + | chr1_4:16422900-16422919 | Msa0153220:CDS | 35.0% | |
| GAATCATAATCTCTATCACG+CGG | - | chr1_4:16423027-16423046 | None:intergenic | 35.0% | |
| TGTCCTTTCTACTTCAAGAT+CGG | + | chr1_4:16422439-16422458 | Msa0153220:CDS | 35.0% | |
| !! | AGAAATCTTCGAAGTGTTGT+TGG | - | chr1_4:16422612-16422631 | None:intergenic | 35.0% |
| TTCACCGAGCTTTCAAAATT+CGG | + | chr1_4:16422643-16422662 | Msa0153220:CDS | 35.0% | |
| !! | GTAACCGAATTTTGAAAGCT+CGG | - | chr1_4:16422650-16422669 | None:intergenic | 35.0% |
| GGAGAAAAATCCGCTAAAAT+CGG | - | chr1_4:16422802-16422821 | None:intergenic | 35.0% | |
| TGCATGTTAAGAAGATTGGT+AGG | + | chr1_4:16422899-16422918 | Msa0153220:CDS | 35.0% | |
| GCATGTTAAGAAGATTGGTA+GGG | + | chr1_4:16422900-16422919 | Msa0153220:CDS | 35.0% | |
| GAATCATAATCTCTATCACG+CGG | - | chr1_4:16423027-16423046 | None:intergenic | 35.0% | |
| !! | TTGAGAGGGAGGTTTTATGA+AGG | + | chr1_4:16422772-16422791 | Msa0153220:CDS | 40.0% |
| !! | TGAGAGGGAGGTTTTATGAA+GGG | + | chr1_4:16422773-16422792 | Msa0153220:CDS | 40.0% |
| !! | AGCGGATTTTTCTCCTGTTA+CGG | + | chr1_4:16422807-16422826 | Msa0153220:CDS | 40.0% |
| ! | GGAAATTGTTTTCTTCGCAG+CGG | + | chr1_4:16422932-16422951 | Msa0153220:CDS | 40.0% |
| GATAGAGATTATGATTCGCG+TGG | + | chr1_4:16423030-16423049 | Msa0153220:CDS | 40.0% | |
| TGGAAGACGAAGTAGTGATA+GGG | + | chr1_4:16423050-16423069 | Msa0153220:CDS | 40.0% | |
| ACGAAGTAGTGATAGGGATA+GGG | + | chr1_4:16423056-16423075 | Msa0153220:CDS | 40.0% | |
| TAGTGATAGGGATAGGGTTA+GGG | + | chr1_4:16423062-16423081 | Msa0153220:CDS | 40.0% | |
| GGAGAGGAAAAGAGATAGTA+GGG | + | chr1_4:16423101-16423120 | Msa0153220:CDS | 40.0% | |
| AGAGATAGTAGGGATAGAGA+TGG | + | chr1_4:16423111-16423130 | Msa0153220:CDS | 40.0% | |
| ATAGTAGGGATAGAGATGGT+GGG | + | chr1_4:16423115-16423134 | Msa0153220:CDS | 40.0% | |
| GAGGATTGAGCAATGGAATA+GGG | + | chr1_4:16423185-16423204 | Msa0153220:CDS | 40.0% | |
| GCAATGGAATAGGGAAAAAG+AGG | + | chr1_4:16423194-16423213 | Msa0153220:CDS | 40.0% | |
| !! | TTGAGAGGGAGGTTTTATGA+AGG | + | chr1_4:16422772-16422791 | Msa0153220:CDS | 40.0% |
| !! | TGAGAGGGAGGTTTTATGAA+GGG | + | chr1_4:16422773-16422792 | Msa0153220:CDS | 40.0% |
| !! | AGCGGATTTTTCTCCTGTTA+CGG | + | chr1_4:16422807-16422826 | Msa0153220:CDS | 40.0% |
| ! | GGAAATTGTTTTCTTCGCAG+CGG | + | chr1_4:16422932-16422951 | Msa0153220:CDS | 40.0% |
| GATAGAGATTATGATTCGCG+TGG | + | chr1_4:16423030-16423049 | Msa0153220:CDS | 40.0% | |
| TGGAAGACGAAGTAGTGATA+GGG | + | chr1_4:16423050-16423069 | Msa0153220:CDS | 40.0% | |
| ACGAAGTAGTGATAGGGATA+GGG | + | chr1_4:16423056-16423075 | Msa0153220:CDS | 40.0% | |
| TAGTGATAGGGATAGGGTTA+GGG | + | chr1_4:16423062-16423081 | Msa0153220:CDS | 40.0% | |
| GGAGAGGAAAAGAGATAGTA+GGG | + | chr1_4:16423101-16423120 | Msa0153220:CDS | 40.0% | |
| AGAGATAGTAGGGATAGAGA+TGG | + | chr1_4:16423111-16423130 | Msa0153220:CDS | 40.0% | |
| ATAGTAGGGATAGAGATGGT+GGG | + | chr1_4:16423115-16423134 | Msa0153220:CDS | 40.0% | |
| GAGGATTGAGCAATGGAATA+GGG | + | chr1_4:16423185-16423204 | Msa0153220:CDS | 40.0% | |
| GCAATGGAATAGGGAAAAAG+AGG | + | chr1_4:16423194-16423213 | Msa0153220:CDS | 40.0% | |
| ! | AAGTGTTGTTGGATCTGACG+CGG | - | chr1_4:16422601-16422620 | None:intergenic | 45.0% |
| TAAAGAGGAGGATCATGCTG+CGG | + | chr1_4:16422735-16422754 | Msa0153220:CDS | 45.0% | |
| ! | TCCTGTTACGGATTTTCGTG+AGG | + | chr1_4:16422819-16422838 | Msa0153220:CDS | 45.0% |
| GAGGAGAATAGCTGTAATCG+TGG | + | chr1_4:16422859-16422878 | Msa0153220:CDS | 45.0% | |
| GAGAATAGCTGTAATCGTGG+TGG | + | chr1_4:16422862-16422881 | Msa0153220:CDS | 45.0% | |
| AGAAGATTGGTAGGGAGTTG+AGG | + | chr1_4:16422908-16422927 | Msa0153220:CDS | 45.0% | |
| GTGGAAGACGAAGTAGTGAT+AGG | + | chr1_4:16423049-16423068 | Msa0153220:CDS | 45.0% | |
| GACGAAGTAGTGATAGGGAT+AGG | + | chr1_4:16423055-16423074 | Msa0153220:CDS | 45.0% | |
| GTAGTGATAGGGATAGGGTT+AGG | + | chr1_4:16423061-16423080 | Msa0153220:CDS | 45.0% | |
| ATAGGGTTAGGGATGGAGAT+AGG | + | chr1_4:16423073-16423092 | Msa0153220:CDS | 45.0% | |
| TAGGGTTAGGGATGGAGATA+GGG | + | chr1_4:16423074-16423093 | Msa0153220:CDS | 45.0% | |
| TTAGGGATGGAGATAGGGAT+AGG | + | chr1_4:16423079-16423098 | Msa0153220:CDS | 45.0% | |
| TAGGGATGGAGATAGGGATA+GGG | + | chr1_4:16423080-16423099 | Msa0153220:CDS | 45.0% | |
| GGGAGAGGAAAAGAGATAGT+AGG | + | chr1_4:16423100-16423119 | Msa0153220:CDS | 45.0% | |
| GATAGTAGGGATAGAGATGG+TGG | + | chr1_4:16423114-16423133 | Msa0153220:CDS | 45.0% | |
| CGAGGATTGAGCAATGGAAT+AGG | + | chr1_4:16423184-16423203 | Msa0153220:CDS | 45.0% | |
| ! | AAGTGTTGTTGGATCTGACG+CGG | - | chr1_4:16422601-16422620 | None:intergenic | 45.0% |
| TAAAGAGGAGGATCATGCTG+CGG | + | chr1_4:16422735-16422754 | Msa0153220:CDS | 45.0% | |
| ! | TCCTGTTACGGATTTTCGTG+AGG | + | chr1_4:16422819-16422838 | Msa0153220:CDS | 45.0% |
| GAGGAGAATAGCTGTAATCG+TGG | + | chr1_4:16422859-16422878 | Msa0153220:CDS | 45.0% | |
| GAGAATAGCTGTAATCGTGG+TGG | + | chr1_4:16422862-16422881 | Msa0153220:CDS | 45.0% | |
| AGAAGATTGGTAGGGAGTTG+AGG | + | chr1_4:16422908-16422927 | Msa0153220:CDS | 45.0% | |
| GTGGAAGACGAAGTAGTGAT+AGG | + | chr1_4:16423049-16423068 | Msa0153220:CDS | 45.0% | |
| GACGAAGTAGTGATAGGGAT+AGG | + | chr1_4:16423055-16423074 | Msa0153220:CDS | 45.0% | |
| GTAGTGATAGGGATAGGGTT+AGG | + | chr1_4:16423061-16423080 | Msa0153220:CDS | 45.0% | |
| ATAGGGTTAGGGATGGAGAT+AGG | + | chr1_4:16423073-16423092 | Msa0153220:CDS | 45.0% | |
| TAGGGTTAGGGATGGAGATA+GGG | + | chr1_4:16423074-16423093 | Msa0153220:CDS | 45.0% | |
| TTAGGGATGGAGATAGGGAT+AGG | + | chr1_4:16423079-16423098 | Msa0153220:CDS | 45.0% | |
| TAGGGATGGAGATAGGGATA+GGG | + | chr1_4:16423080-16423099 | Msa0153220:CDS | 45.0% | |
| GGGAGAGGAAAAGAGATAGT+AGG | + | chr1_4:16423100-16423119 | Msa0153220:CDS | 45.0% | |
| GATAGTAGGGATAGAGATGG+TGG | + | chr1_4:16423114-16423133 | Msa0153220:CDS | 45.0% | |
| CGAGGATTGAGCAATGGAAT+AGG | + | chr1_4:16423184-16423203 | Msa0153220:CDS | 45.0% | |
| ! | GCGCCGATCTTGAAGTAGAA+AGG | - | chr1_4:16422445-16422464 | None:intergenic | 50.0% |
| AGGAGAGTTGGGGAGATTGT+GGG | - | chr1_4:16422508-16422527 | None:intergenic | 50.0% | |
| TGTTGGAGAGGAGGAGAGTT+GGG | - | chr1_4:16422519-16422538 | None:intergenic | 50.0% | |
| ATGTTGGAGAGGAGGAGAGT+TGG | - | chr1_4:16422520-16422539 | None:intergenic | 50.0% | |
| GTTGGTACATGTTGGAGAGG+AGG | - | chr1_4:16422528-16422547 | None:intergenic | 50.0% | |
| GACGTTGGTACATGTTGGAG+AGG | - | chr1_4:16422531-16422550 | None:intergenic | 50.0% | |
| ! | GGATCAATTGGTTGGCCGTT+TGG | - | chr1_4:16422580-16422599 | None:intergenic | 50.0% |
| TCTGACGCGGATCAATTGGT+TGG | - | chr1_4:16422588-16422607 | None:intergenic | 50.0% | |
| TGGATCTGACGCGGATCAAT+TGG | - | chr1_4:16422592-16422611 | None:intergenic | 50.0% | |
| !! | GAGGGAGGTTTTATGAAGGG+AGG | + | chr1_4:16422776-16422795 | Msa0153220:CDS | 50.0% |
| !! | TGAAGGGAGGCCGATTTTAG+CGG | + | chr1_4:16422789-16422808 | Msa0153220:CDS | 50.0% |
| GCCTCACGAAAATCCGTAAC+AGG | - | chr1_4:16422823-16422842 | None:intergenic | 50.0% | |
| AGATTGGTAGGGAGTTGAGG+AGG | + | chr1_4:16422911-16422930 | Msa0153220:CDS | 50.0% | |
| TCGGACTATTACTCCTGCTC+CGG | - | chr1_4:16422966-16422985 | None:intergenic | 50.0% | |
| CTGCTTCTTCTTCTCCTCCT+CGG | - | chr1_4:16422985-16423004 | None:intergenic | 50.0% | |
| GATAGGGATAGGGTTAGGGA+TGG | + | chr1_4:16423066-16423085 | Msa0153220:CDS | 50.0% | |
| ATGGAGATAGGGATAGGGAG+AGG | + | chr1_4:16423085-16423104 | Msa0153220:CDS | 50.0% | |
| !! | AGAGATGGTGGGAGGAGAAA+TGG | + | chr1_4:16423126-16423145 | Msa0153220:CDS | 50.0% |
| !! | GAGATGGTGGGAGGAGAAAT+GGG | + | chr1_4:16423127-16423146 | Msa0153220:CDS | 50.0% |
| ! | GCGCCGATCTTGAAGTAGAA+AGG | - | chr1_4:16422445-16422464 | None:intergenic | 50.0% |
| AGGAGAGTTGGGGAGATTGT+GGG | - | chr1_4:16422508-16422527 | None:intergenic | 50.0% | |
| TGTTGGAGAGGAGGAGAGTT+GGG | - | chr1_4:16422519-16422538 | None:intergenic | 50.0% | |
| ATGTTGGAGAGGAGGAGAGT+TGG | - | chr1_4:16422520-16422539 | None:intergenic | 50.0% | |
| GTTGGTACATGTTGGAGAGG+AGG | - | chr1_4:16422528-16422547 | None:intergenic | 50.0% | |
| GACGTTGGTACATGTTGGAG+AGG | - | chr1_4:16422531-16422550 | None:intergenic | 50.0% | |
| ! | GGATCAATTGGTTGGCCGTT+TGG | - | chr1_4:16422580-16422599 | None:intergenic | 50.0% |
| TCTGACGCGGATCAATTGGT+TGG | - | chr1_4:16422588-16422607 | None:intergenic | 50.0% | |
| TGGATCTGACGCGGATCAAT+TGG | - | chr1_4:16422592-16422611 | None:intergenic | 50.0% | |
| !! | GAGGGAGGTTTTATGAAGGG+AGG | + | chr1_4:16422776-16422795 | Msa0153220:CDS | 50.0% |
| !! | TGAAGGGAGGCCGATTTTAG+CGG | + | chr1_4:16422789-16422808 | Msa0153220:CDS | 50.0% |
| GCCTCACGAAAATCCGTAAC+AGG | - | chr1_4:16422823-16422842 | None:intergenic | 50.0% | |
| AGATTGGTAGGGAGTTGAGG+AGG | + | chr1_4:16422911-16422930 | Msa0153220:CDS | 50.0% | |
| TCGGACTATTACTCCTGCTC+CGG | - | chr1_4:16422966-16422985 | None:intergenic | 50.0% | |
| CTGCTTCTTCTTCTCCTCCT+CGG | - | chr1_4:16422985-16423004 | None:intergenic | 50.0% | |
| GATAGGGATAGGGTTAGGGA+TGG | + | chr1_4:16423066-16423085 | Msa0153220:CDS | 50.0% | |
| ATGGAGATAGGGATAGGGAG+AGG | + | chr1_4:16423085-16423104 | Msa0153220:CDS | 50.0% | |
| !! | AGAGATGGTGGGAGGAGAAA+TGG | + | chr1_4:16423126-16423145 | Msa0153220:CDS | 50.0% |
| !! | GAGATGGTGGGAGGAGAAAT+GGG | + | chr1_4:16423127-16423146 | Msa0153220:CDS | 50.0% |
| GGTTGTGGAGACGAGAGCAA+CGG | - | chr1_4:16422483-16422502 | None:intergenic | 55.0% | |
| GAGTTGGGGAGATTGTGGGA+CGG | - | chr1_4:16422504-16422523 | None:intergenic | 55.0% | |
| GAGGAGAGTTGGGGAGATTG+TGG | - | chr1_4:16422509-16422528 | None:intergenic | 55.0% | |
| GTTGGAGAGGAGGAGAGTTG+GGG | - | chr1_4:16422518-16422537 | None:intergenic | 55.0% | |
| GTCGGGACGTTGGTACATGT+TGG | - | chr1_4:16422536-16422555 | None:intergenic | 55.0% | |
| CGGCGTTAGCGAGTTTGAGA+GGG | + | chr1_4:16422758-16422777 | Msa0153220:CDS | 55.0% | |
| CGTTAGCGAGTTTGAGAGGG+AGG | + | chr1_4:16422761-16422780 | Msa0153220:CDS | 55.0% | |
| GGCGACTTGTCGACAGTATG+AGG | + | chr1_4:16422840-16422859 | Msa0153220:CDS | 55.0% | |
| ! | TGTTTTCTTCGCAGCGGAGC+AGG | + | chr1_4:16422938-16422957 | Msa0153220:CDS | 55.0% |
| GGAGCAGGAGTAATAGTCCG+AGG | + | chr1_4:16422965-16422984 | Msa0153220:CDS | 55.0% | |
| GCAGGAGTAATAGTCCGAGG+AGG | + | chr1_4:16422968-16422987 | Msa0153220:CDS | 55.0% | |
| !! | GTAGGGATAGAGATGGTGGG+AGG | + | chr1_4:16423118-16423137 | Msa0153220:CDS | 55.0% |
| ! | ATGGTGGGAGGAGAAATGGG+AGG | + | chr1_4:16423130-16423149 | Msa0153220:CDS | 55.0% |
| TGGTGGGAGGAGAAATGGGA+GGG | + | chr1_4:16423131-16423150 | Msa0153220:CDS | 55.0% | |
| GAGAAATGGGAGGGAGGCAA+GGG | + | chr1_4:16423140-16423159 | Msa0153220:CDS | 55.0% | |
| CAAGGGAAGGAAGCGAGGAA+AGG | + | chr1_4:16423157-16423176 | Msa0153220:CDS | 55.0% | |
| GGTTGTGGAGACGAGAGCAA+CGG | - | chr1_4:16422483-16422502 | None:intergenic | 55.0% | |
| GAGTTGGGGAGATTGTGGGA+CGG | - | chr1_4:16422504-16422523 | None:intergenic | 55.0% | |
| GAGGAGAGTTGGGGAGATTG+TGG | - | chr1_4:16422509-16422528 | None:intergenic | 55.0% | |
| GTTGGAGAGGAGGAGAGTTG+GGG | - | chr1_4:16422518-16422537 | None:intergenic | 55.0% | |
| GTCGGGACGTTGGTACATGT+TGG | - | chr1_4:16422536-16422555 | None:intergenic | 55.0% | |
| CGGCGTTAGCGAGTTTGAGA+GGG | + | chr1_4:16422758-16422777 | Msa0153220:CDS | 55.0% | |
| CGTTAGCGAGTTTGAGAGGG+AGG | + | chr1_4:16422761-16422780 | Msa0153220:CDS | 55.0% | |
| GGCGACTTGTCGACAGTATG+AGG | + | chr1_4:16422840-16422859 | Msa0153220:CDS | 55.0% | |
| ! | TGTTTTCTTCGCAGCGGAGC+AGG | + | chr1_4:16422938-16422957 | Msa0153220:CDS | 55.0% |
| GGAGCAGGAGTAATAGTCCG+AGG | + | chr1_4:16422965-16422984 | Msa0153220:CDS | 55.0% | |
| GCAGGAGTAATAGTCCGAGG+AGG | + | chr1_4:16422968-16422987 | Msa0153220:CDS | 55.0% | |
| !! | GTAGGGATAGAGATGGTGGG+AGG | + | chr1_4:16423118-16423137 | Msa0153220:CDS | 55.0% |
| ! | ATGGTGGGAGGAGAAATGGG+AGG | + | chr1_4:16423130-16423149 | Msa0153220:CDS | 55.0% |
| TGGTGGGAGGAGAAATGGGA+GGG | + | chr1_4:16423131-16423150 | Msa0153220:CDS | 55.0% | |
| GAGAAATGGGAGGGAGGCAA+GGG | + | chr1_4:16423140-16423159 | Msa0153220:CDS | 55.0% | |
| CAAGGGAAGGAAGCGAGGAA+AGG | + | chr1_4:16423157-16423176 | Msa0153220:CDS | 55.0% | |
| AAGATCGGCGCGTGTCGTCA+CGG | + | chr1_4:16422454-16422473 | Msa0153220:CDS | 60.0% | |
| GGGAGATTGTGGGACGGTTG+TGG | - | chr1_4:16422498-16422517 | None:intergenic | 60.0% | |
| ! | GGGTGATGATGTCGGGACGT+TGG | - | chr1_4:16422546-16422565 | None:intergenic | 60.0% |
| ! | ACGCCAGGGGTGATGATGTC+GGG | - | chr1_4:16422553-16422572 | None:intergenic | 60.0% |
| ! | GACGCCAGGGGTGATGATGT+CGG | - | chr1_4:16422554-16422573 | None:intergenic | 60.0% |
| !! | ACCCCTGGCGTCGATCCAAA+CGG | + | chr1_4:16422562-16422581 | Msa0153220:CDS | 60.0% |
| AGAGGAGGATCATGCTGCGG+CGG | + | chr1_4:16422738-16422757 | Msa0153220:CDS | 60.0% | |
| GCGGCGTTAGCGAGTTTGAG+AGG | + | chr1_4:16422757-16422776 | Msa0153220:CDS | 60.0% | |
| TGGGAGGAGAAATGGGAGGG+AGG | + | chr1_4:16423134-16423153 | Msa0153220:CDS | 60.0% | |
| GGAGAAATGGGAGGGAGGCA+AGG | + | chr1_4:16423139-16423158 | Msa0153220:CDS | 60.0% | |
| AATGGGAGGGAGGCAAGGGA+AGG | + | chr1_4:16423144-16423163 | Msa0153220:CDS | 60.0% | |
| GGCGAGCGAGGATTGAGCAA+TGG | + | chr1_4:16423178-16423197 | Msa0153220:CDS | 60.0% | |
| AAGATCGGCGCGTGTCGTCA+CGG | + | chr1_4:16422454-16422473 | Msa0153220:CDS | 60.0% | |
| GGGAGATTGTGGGACGGTTG+TGG | - | chr1_4:16422498-16422517 | None:intergenic | 60.0% | |
| ! | GGGTGATGATGTCGGGACGT+TGG | - | chr1_4:16422546-16422565 | None:intergenic | 60.0% |
| ! | ACGCCAGGGGTGATGATGTC+GGG | - | chr1_4:16422553-16422572 | None:intergenic | 60.0% |
| ! | GACGCCAGGGGTGATGATGT+CGG | - | chr1_4:16422554-16422573 | None:intergenic | 60.0% |
| !! | ACCCCTGGCGTCGATCCAAA+CGG | + | chr1_4:16422562-16422581 | Msa0153220:CDS | 60.0% |
| AGAGGAGGATCATGCTGCGG+CGG | + | chr1_4:16422738-16422757 | Msa0153220:CDS | 60.0% | |
| GCGGCGTTAGCGAGTTTGAG+AGG | + | chr1_4:16422757-16422776 | Msa0153220:CDS | 60.0% | |
| TGGGAGGAGAAATGGGAGGG+AGG | + | chr1_4:16423134-16423153 | Msa0153220:CDS | 60.0% | |
| GGAGAAATGGGAGGGAGGCA+AGG | + | chr1_4:16423139-16423158 | Msa0153220:CDS | 60.0% | |
| AATGGGAGGGAGGCAAGGGA+AGG | + | chr1_4:16423144-16423163 | Msa0153220:CDS | 60.0% | |
| GGCGAGCGAGGATTGAGCAA+TGG | + | chr1_4:16423178-16423197 | Msa0153220:CDS | 60.0% | |
| CGTCCCGACATCATCACCCC+TGG | + | chr1_4:16422547-16422566 | Msa0153220:CDS | 65.0% | |
| GCCGTTTGGATCGACGCCAG+GGG | - | chr1_4:16422566-16422585 | None:intergenic | 65.0% | |
| GGCCGTTTGGATCGACGCCA+GGG | - | chr1_4:16422567-16422586 | None:intergenic | 65.0% | |
| TGGCCGTTTGGATCGACGCC+AGG | - | chr1_4:16422568-16422587 | None:intergenic | 65.0% | |
| GGAGGCAAGGGAAGGAAGCG+AGG | + | chr1_4:16423152-16423171 | Msa0153220:CDS | 65.0% | |
| GAAGCGAGGAAAGGCGAGCG+AGG | + | chr1_4:16423166-16423185 | Msa0153220:CDS | 65.0% | |
| CGTCCCGACATCATCACCCC+TGG | + | chr1_4:16422547-16422566 | Msa0153220:CDS | 65.0% | |
| GCCGTTTGGATCGACGCCAG+GGG | - | chr1_4:16422566-16422585 | None:intergenic | 65.0% | |
| GGCCGTTTGGATCGACGCCA+GGG | - | chr1_4:16422567-16422586 | None:intergenic | 65.0% | |
| TGGCCGTTTGGATCGACGCC+AGG | - | chr1_4:16422568-16422587 | None:intergenic | 65.0% | |
| GGAGGCAAGGGAAGGAAGCG+AGG | + | chr1_4:16423152-16423171 | Msa0153220:CDS | 65.0% | |
| GAAGCGAGGAAAGGCGAGCG+AGG | + | chr1_4:16423166-16423185 | Msa0153220:CDS | 65.0% | |
| CTTCGCAGCGGAGCAGGAGC+CGG | + | chr1_4:16422944-16422963 | Msa0153220:CDS | 70.0% | |
| CTTCGCAGCGGAGCAGGAGC+CGG | + | chr1_4:16422944-16422963 | Msa0153220:CDS | 70.0% | |
| AGCGGAGCAGGAGCCGGAGC+AGG | + | chr1_4:16422950-16422969 | Msa0153220:CDS | 75.0% | |
| AGCGGAGCAGGAGCCGGAGC+AGG | + | chr1_4:16422950-16422969 | Msa0153220:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16422388 | 16423227 | 16422388 | ID=Msa0153220;Name=Msa0153220 |
| chr1_4 | mRNA | 16422388 | 16423227 | 16422388 | ID=Msa0153220-mRNA-1;Parent=Msa0153220;Name=Msa0153220-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|279 |
| chr1_4 | exon | 16422388 | 16423227 | 16422388 | ID=Msa0153220-mRNA-1:exon:6322;Parent=Msa0153220-mRNA-1 |
| chr1_4 | CDS | 16422388 | 16423227 | 16422388 | ID=Msa0153220-mRNA-1:cds;Parent=Msa0153220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
