Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153260 | XP_013466739.1 | 91.241 | 137 | 10 | 1 | 1 | 137 | 152 | 286 | 1.79e-79 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153260 | sp|P42774|GBF1_ARATH | 43.077 | 65 | 37 | 0 | 73 | 137 | 222 | 286 | 1.97e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153260 | A0A072VRN1 | 91.241 | 137 | 10 | 1 | 1 | 137 | 152 | 286 | 8.56e-80 | 247 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153260 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153260 | MtrunA17_Chr1g0162721 | 91.241 | 137 | 10 | 1 | 1 | 137 | 152 | 286 | 1.65e-83 | 247 |
| Msa0153260 | MtrunA17_Chr2g0302481 | 54.745 | 137 | 33 | 2 | 1 | 137 | 60 | 167 | 9.40e-37 | 124 |
| Msa0153260 | MtrunA17_Chr8g0373571 | 50.000 | 64 | 32 | 0 | 73 | 136 | 260 | 323 | 4.97e-16 | 73.2 |
| Msa0153260 | MtrunA17_Chr4g0065261 | 55.882 | 68 | 29 | 1 | 70 | 137 | 88 | 154 | 8.02e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153260 | AT4G36730.2 | 43.077 | 65 | 37 | 0 | 73 | 137 | 220 | 284 | 1.85e-13 | 66.2 |
| Msa0153260 | AT4G36730.1 | 43.077 | 65 | 37 | 0 | 73 | 137 | 222 | 286 | 2.00e-13 | 65.9 |
| Msa0153260 | AT2G35530.1 | 42.188 | 64 | 37 | 0 | 73 | 136 | 305 | 368 | 5.09e-12 | 62.4 |
| Msa0153260 | AT1G32150.1 | 43.750 | 64 | 36 | 0 | 73 | 136 | 295 | 358 | 7.88e-11 | 58.9 |
Find 20 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGTCTGGCTCAGAATTT+AGG | 0.161997 | 1_4:-16514693 | Msa0153260:CDS |
| GATTTATGCTTCTTAGTTAA+AGG | 0.201185 | 1_4:+16514894 | None:intergenic |
| CTGGTCTGGCTCAGAATTTA+GGG | 0.370245 | 1_4:-16514692 | Msa0153260:CDS |
| AAGATCAAAGATAAAGAAAC+AGG | 0.437513 | 1_4:-16513450 | Msa0153260:intron |
| TTCCTTGTAGAAAATCCATC+TGG | 0.463105 | 1_4:-16514711 | Msa0153260:intron |
| TAAGCTTTCTGAGGAATGTC+TGG | 0.463695 | 1_4:-16512332 | Msa0153260:CDS |
| TGTAGAAAATCCATCTGGTC+TGG | 0.486514 | 1_4:-16514706 | Msa0153260:intron |
| TAATAAGATAGACACTCTTA+AGG | 0.488014 | 1_4:-16512386 | Msa0153260:CDS |
| GCTTAGCAAGCGTTTGTGCT+AGG | 0.489007 | 1_4:+16512350 | None:intergenic |
| GTTAAAATGATGGACCTCAA+TGG | 0.494777 | 1_4:+16512288 | None:intergenic |
| AAATTCTGAGCCAGACCAGA+TGG | 0.553977 | 1_4:+16514696 | None:intergenic |
| TGGAAGCAAGAGATCACCAG+AGG | 0.574208 | 1_4:-16515135 | Msa0153260:CDS |
| TCTAACATGATTACTGCGGA+TGG | 0.576063 | 1_4:-16514873 | Msa0153260:intron |
| AAAGAGGGGAGTTAAAATGA+TGG | 0.581509 | 1_4:+16512278 | None:intergenic |
| AACGCTTGCTAAGCTTTCTG+AGG | 0.605311 | 1_4:-16512341 | Msa0153260:CDS |
| CAATGAAAATGATTCCATTG+AGG | 0.612331 | 1_4:-16512302 | Msa0153260:CDS |
| GGAAGCAAGAGATCACCAGA+GGG | 0.616601 | 1_4:-16515134 | Msa0153260:CDS |
| GAATTTAGGGACAGTCGTCA+AGG | 0.625189 | 1_4:-16514679 | Msa0153260:CDS |
| TGTGTGCGCAGTGCAGCAAG+TGG | 0.664216 | 1_4:-16515155 | Msa0153260:intron |
| TAAATCTAACATGATTACTG+CGG | 0.677606 | 1_4:-16514877 | Msa0153260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTCATATAAATATG+CGG | - | chr1_4:16512465-16512484 | Msa0153260:intron | 10.0% |
| !! | TTTATTATAAGATAATCAAA+AGG | + | chr1_4:16512709-16512728 | None:intergenic | 10.0% |
| !! | TATTAAATAAAATTAGAGTA+CGG | + | chr1_4:16514322-16514341 | None:intergenic | 10.0% |
| !!! | ATAAATTTTTATTCAGACTT+GGG | + | chr1_4:16512345-16512364 | None:intergenic | 15.0% |
| !! | TTAAAATTATTCTTTAGTAC+AGG | - | chr1_4:16512566-16512585 | Msa0153260:intron | 15.0% |
| !! | ATTTAATAAAATAGAAGTGA+TGG | - | chr1_4:16513408-16513427 | Msa0153260:intron | 15.0% |
| !! | AAAATGTAAAAAGAAAATGA+TGG | - | chr1_4:16514239-16514258 | Msa0153260:intron | 15.0% |
| !!! | TTTTATAAATTATGTAATCC+AGG | + | chr1_4:16515053-16515072 | None:intergenic | 15.0% |
| !!! | CATAAATTTTTATTCAGACT+TGG | + | chr1_4:16512346-16512365 | None:intergenic | 20.0% |
| !! | AAGAAATGAGTAGTTTATTA+AGG | - | chr1_4:16512541-16512560 | Msa0153260:intron | 20.0% |
| !!! | TGTTTGAAAAGTTTTTTTTG+TGG | - | chr1_4:16512967-16512986 | Msa0153260:intron | 20.0% |
| !! | GTAACATAGATTTAGAAAAA+TGG | - | chr1_4:16513519-16513538 | Msa0153260:intron | 20.0% |
| !!! | GATCATACAGATATTTTTAT+AGG | + | chr1_4:16513723-16513742 | None:intergenic | 20.0% |
| !!! | CAATATTTTCTGTAATAATG+AGG | + | chr1_4:16514178-16514197 | None:intergenic | 20.0% |
| !! | AATGTATATAAATTCGACAA+TGG | - | chr1_4:16514199-16514218 | Msa0153260:intron | 20.0% |
| !! | ATGTATATAAATTCGACAAT+GGG | - | chr1_4:16514200-16514219 | Msa0153260:intron | 20.0% |
| !!! | GAGTTGAAAAAAAACTTTTT+GGG | + | chr1_4:16514300-16514319 | None:intergenic | 20.0% |
| !! | AAATGTCAAGTAGAAAAAAT+AGG | + | chr1_4:16514421-16514440 | None:intergenic | 20.0% |
| !! | TGTTATGTGCTTTAATAAAT+AGG | + | chr1_4:16514550-16514569 | None:intergenic | 20.0% |
| !! | TACATGATTATGATTATACA+TGG | - | chr1_4:16514815-16514834 | Msa0153260:intron | 20.0% |
| !!! | TAGTAATGGAAGATAATATT+TGG | + | chr1_4:16514954-16514973 | None:intergenic | 20.0% |
| !! | TACAATTTGTTCTTGTTCTT+CGG | - | chr1_4:16512297-16512316 | Msa0153260:CDS | 25.0% |
| ! | GATTTATGCTTCTTAGTTAA+AGG | + | chr1_4:16512649-16512668 | None:intergenic | 25.0% |
| ! | TAAATCTAACATGATTACTG+CGG | - | chr1_4:16512663-16512682 | Msa0153260:intron | 25.0% |
| ! | TCTGTAATTTGAATTTCAGA+AGG | - | chr1_4:16512748-16512767 | Msa0153260:intron | 25.0% |
| !!! | CAGTTTTTTAGTAAGATAAC+TGG | - | chr1_4:16513013-16513032 | Msa0153260:intron | 25.0% |
| ! | TAATATGTCCTTATAAAGCT+AGG | + | chr1_4:16513281-16513300 | None:intergenic | 25.0% |
| ! | ACATAGATTTAGAAAAATGG+AGG | - | chr1_4:16513522-16513541 | Msa0153260:intron | 25.0% |
| !! | CTAGATTTGCTTAAATTTGT+TGG | - | chr1_4:16513670-16513689 | Msa0153260:intron | 25.0% |
| !!! | ACAGATATTTTTATAGGACT+AGG | + | chr1_4:16513717-16513736 | None:intergenic | 25.0% |
| ! | TTCTATAACTATTGCCAATT+TGG | + | chr1_4:16513758-16513777 | None:intergenic | 25.0% |
| ! | TAGAATGCTAGATTGAAAAA+TGG | + | chr1_4:16513892-16513911 | None:intergenic | 25.0% |
| !! | CATTCTAGCTAAATATGTAT+GGG | - | chr1_4:16513905-16513924 | Msa0153260:intron | 25.0% |
| !! | ATTCTAGCTAAATATGTATG+GGG | - | chr1_4:16513906-16513925 | Msa0153260:intron | 25.0% |
| ! | AAGTTTGATTCATAACTATC+TGG | - | chr1_4:16513967-16513986 | Msa0153260:intron | 25.0% |
| ! | AAAGAAAAAGATTGTCAAAC+AGG | - | chr1_4:16514056-16514075 | Msa0153260:intron | 25.0% |
| ! | AAGATCAAAGATAAAGAAAC+AGG | - | chr1_4:16514090-16514109 | Msa0153260:intron | 25.0% |
| ! | ATGAGGATAACTATGTATAA+CGG | + | chr1_4:16514161-16514180 | None:intergenic | 25.0% |
| ! | ATGTAAAAAGAAAATGATGG+TGG | - | chr1_4:16514242-16514261 | Msa0153260:intron | 25.0% |
| !! | GGAGTTGAAAAAAAACTTTT+TGG | + | chr1_4:16514301-16514320 | None:intergenic | 25.0% |
| ! | TATGTGCTTTAATAAATAGG+TGG | + | chr1_4:16514547-16514566 | None:intergenic | 25.0% |
| ! | ACAATCATGTTCCAAATAAA+GGG | + | chr1_4:16514791-16514810 | None:intergenic | 25.0% |
| ! | TACAATCATGTTCCAAATAA+AGG | + | chr1_4:16514792-16514811 | None:intergenic | 25.0% |
| !! | TTTATTTGGAACATGATTGT+AGG | - | chr1_4:16514791-16514810 | Msa0153260:intron | 25.0% |
| !! | TTATTTGGAACATGATTGTA+GGG | - | chr1_4:16514792-16514811 | Msa0153260:intron | 25.0% |
| ! | TGATTATGATTATACATGGT+AGG | - | chr1_4:16514819-16514838 | Msa0153260:intron | 25.0% |
| ! | GATTATGATTATACATGGTA+GGG | - | chr1_4:16514820-16514839 | Msa0153260:intron | 25.0% |
| !! | TATTGTTGTTGTATGATCAT+AGG | - | chr1_4:16514909-16514928 | Msa0153260:intron | 25.0% |
| ! | AAGATAATATTTGGCTGTTT+GGG | + | chr1_4:16514945-16514964 | None:intergenic | 25.0% |
| ! | ATTATCTTCCATTACTATTG+TGG | - | chr1_4:16514957-16514976 | Msa0153260:intron | 25.0% |
| ! | TATAAATTATGTAATCCAGG+AGG | + | chr1_4:16515050-16515069 | None:intergenic | 25.0% |
| ! | TAATAAGATAGACACTCTTA+AGG | - | chr1_4:16515154-16515173 | Msa0153260:intron | 25.0% |
| ATTCTTTAGTACAGGTCATA+TGG | - | chr1_4:16512574-16512593 | Msa0153260:intron | 30.0% | |
| TGATGCTCAACTTAAAAATC+TGG | - | chr1_4:16512915-16512934 | Msa0153260:intron | 30.0% | |
| CAATCATTCACACATGTTAT+AGG | - | chr1_4:16513097-16513116 | Msa0153260:intron | 30.0% | |
| AATGGCAGTTCATTCAAATT+CGG | + | chr1_4:16513163-16513182 | None:intergenic | 30.0% | |
| CGATTGAAAACACTAGTTAT+AGG | - | chr1_4:16513195-16513214 | Msa0153260:intron | 30.0% | |
| TTATAGGCACTCTTTGATAT+TGG | - | chr1_4:16513211-16513230 | Msa0153260:intron | 30.0% | |
| GACATATTAAGCACTAATGT+AGG | - | chr1_4:16513292-16513311 | Msa0153260:intron | 30.0% | |
| AAAAGTTATGTTGTAACACG+AGG | + | chr1_4:16513347-16513366 | None:intergenic | 30.0% | |
| GTCGCAAAAATAAAACTCTA+AGG | - | chr1_4:16513544-16513563 | Msa0153260:intron | 30.0% | |
| !! | CAAAAATAAAACTCTAAGGC+TGG | - | chr1_4:16513548-16513567 | Msa0153260:intron | 30.0% |
| ! | TATACATACAATGTGTCGAT+GGG | + | chr1_4:16513615-16513634 | None:intergenic | 30.0% |
| ! | TTTTTATAGGACTAGGTAGA+TGG | + | chr1_4:16513710-16513729 | None:intergenic | 30.0% |
| AATGCTAGATTGAAAAATGG+TGG | + | chr1_4:16513889-16513908 | None:intergenic | 30.0% | |
| ! | GCATTCTAGCTAAATATGTA+TGG | - | chr1_4:16513904-16513923 | Msa0153260:intron | 30.0% |
| AGTAAGTAAATTCCTTCTCA+AGG | - | chr1_4:16513939-16513958 | Msa0153260:intron | 30.0% | |
| ATATAAATTCGACAATGGGT+TGG | - | chr1_4:16514204-16514223 | Msa0153260:intron | 30.0% | |
| ! | TGGTGGTTCATTTTCATTAT+TGG | - | chr1_4:16514259-16514278 | Msa0153260:intron | 30.0% |
| ! | AAATGCATGTTTAGGACATA+AGG | + | chr1_4:16514486-16514505 | None:intergenic | 30.0% |
| GTCCTAAACATGCATTTAAA+TGG | - | chr1_4:16514489-16514508 | Msa0153260:intron | 30.0% | |
| ! | TGCCATTTAAATGCATGTTT+AGG | + | chr1_4:16514494-16514513 | None:intergenic | 30.0% |
| TAAAGCACATAACAAAACTC+TGG | - | chr1_4:16514556-16514575 | Msa0153260:intron | 30.0% | |
| AAAGCACATAACAAAACTCT+GGG | - | chr1_4:16514557-16514576 | Msa0153260:intron | 30.0% | |
| TTGAAACTGATCATCAATGA+AGG | + | chr1_4:16514682-16514701 | None:intergenic | 30.0% | |
| CAACAATCTTTCCCTTTATT+TGG | - | chr1_4:16514777-16514796 | Msa0153260:intron | 30.0% | |
| GAAGATAATATTTGGCTGTT+TGG | + | chr1_4:16514946-16514965 | None:intergenic | 30.0% | |
| TTCAACTTCCACAATAGTAA+TGG | + | chr1_4:16514968-16514987 | None:intergenic | 30.0% | |
| !! | AATTTGTTATAGTTTCCTCC+TGG | - | chr1_4:16515032-16515051 | Msa0153260:intron | 30.0% |
| ! | CTCAATGGAATCATTTTCAT+TGG | + | chr1_4:16515240-16515259 | None:intergenic | 30.0% |
| CAATGAAAATGATTCCATTG+AGG | - | chr1_4:16515238-16515257 | Msa0153260:intron | 30.0% | |
| GTCTAATTACATCCTTTCTG+TGG | - | chr1_4:16512614-16512633 | Msa0153260:intron | 35.0% | |
| TTCCTTGTAGAAAATCCATC+TGG | - | chr1_4:16512829-16512848 | Msa0153260:intron | 35.0% | |
| CATTATGATATGCACACACT+TGG | - | chr1_4:16513053-16513072 | Msa0153260:intron | 35.0% | |
| !! | AGGAATGTCCTAGCTTTATA+AGG | - | chr1_4:16513270-16513289 | Msa0153260:intron | 35.0% |
| TTAAGCACTAATGTAGGACT+CGG | - | chr1_4:16513298-16513317 | Msa0153260:intron | 35.0% | |
| ! | AAGTGATGGAATGTAACCAT+GGG | - | chr1_4:16513422-16513441 | Msa0153260:intron | 35.0% |
| ! | TGTTAGTTTCGTACAAGTGT+CGG | - | chr1_4:16513445-16513464 | Msa0153260:intron | 35.0% |
| ! | ATACATACAATGTGTCGATG+GGG | + | chr1_4:16513614-16513633 | None:intergenic | 35.0% |
| CTATACATACAATGTGTCGA+TGG | + | chr1_4:16513616-16513635 | None:intergenic | 35.0% | |
| CATCGACACATTGTATGTAT+AGG | - | chr1_4:16513614-16513633 | Msa0153260:intron | 35.0% | |
| AAATCTAGCAAGATTCGAGA+TGG | + | chr1_4:16513658-16513677 | None:intergenic | 35.0% | |
| TAACTATTGCCAATTTGGCA+TGG | + | chr1_4:16513753-16513772 | None:intergenic | 35.0% | |
| ! | TTAGCTGCATTTCTTTTGAC+AGG | - | chr1_4:16514012-16514031 | Msa0153260:intron | 35.0% |
| GATAACAAAACAGCTGTGTT+TGG | - | chr1_4:16514388-16514407 | Msa0153260:intron | 35.0% | |
| AAGGTCACAAGAAAAAGCAA+AGG | + | chr1_4:16514467-16514486 | None:intergenic | 35.0% | |
| ATCAAAGAAACGATGTTCTG+AGG | - | chr1_4:16514647-16514666 | Msa0153260:CDS | 35.0% | |
| ! | ACTAGGTGGATTCAATTACA+TGG | + | chr1_4:16514865-16514884 | None:intergenic | 35.0% |
| ATGTAATTGAATCCACCTAG+TGG | - | chr1_4:16514864-16514883 | Msa0153260:intron | 35.0% | |
| GTTGTATGATCATAGGATCT+TGG | - | chr1_4:16514916-16514935 | Msa0153260:intron | 35.0% | |
| AATTACATCCTTTCTGTGGC+AGG | - | chr1_4:16512618-16512637 | Msa0153260:intron | 40.0% | |
| TCTAACATGATTACTGCGGA+TGG | - | chr1_4:16512667-16512686 | Msa0153260:intron | 40.0% | |
| TACTGCGGATGGTAAGATTA+TGG | - | chr1_4:16512678-16512697 | Msa0153260:intron | 40.0% | |
| !! | GACCAGATGGATTTTCTACA+AGG | + | chr1_4:16512834-16512853 | None:intergenic | 40.0% |
| TGTAGAAAATCCATCTGGTC+TGG | - | chr1_4:16512834-16512853 | Msa0153260:intron | 40.0% | |
| CAATCGCAGATGACACAAAA+TGG | + | chr1_4:16513181-16513200 | None:intergenic | 40.0% | |
| ACATTCCTTACCTTACGAGT+CGG | + | chr1_4:16513258-16513277 | None:intergenic | 40.0% | |
| ! | GAAGTGATGGAATGTAACCA+TGG | - | chr1_4:16513421-16513440 | Msa0153260:intron | 40.0% |
| TTGTACGAAACTAACACCCA+TGG | + | chr1_4:16513441-16513460 | None:intergenic | 40.0% | |
| ACATCGACGCTTCAAATTGA+AGG | + | chr1_4:16513501-16513520 | None:intergenic | 40.0% | |
| CAAACTTAGCAACCTTGAGA+AGG | + | chr1_4:16513954-16513973 | None:intergenic | 40.0% | |
| ! | CTGCATTTCTTTTGACAGGA+AGG | - | chr1_4:16514016-16514035 | Msa0153260:intron | 40.0% |
| ! | AAGTCTGCTCTTTTACCACT+AGG | + | chr1_4:16514882-16514901 | None:intergenic | 40.0% |
| ATAGCTCTTCACATTCTTGC+TGG | + | chr1_4:16515133-16515152 | None:intergenic | 40.0% | |
| ! | TAAGCTTTCTGAGGAATGTC+TGG | - | chr1_4:16515208-16515227 | Msa0153260:intron | 40.0% |
| !!! | CTGTCATTTTGATCTCCCTC+TGG | + | chr1_4:16512424-16512443 | None:intergenic | 45.0% |
| TGAGCTGCAGTTCATGTCTT+TGG | + | chr1_4:16512783-16512802 | None:intergenic | 45.0% | |
| AAATTCTGAGCCAGACCAGA+TGG | + | chr1_4:16512847-16512866 | None:intergenic | 45.0% | |
| ! | TCTGGTCTGGCTCAGAATTT+AGG | - | chr1_4:16512847-16512866 | Msa0153260:intron | 45.0% |
| ! | CTGGTCTGGCTCAGAATTTA+GGG | - | chr1_4:16512848-16512867 | Msa0153260:intron | 45.0% |
| GAATTTAGGGACAGTCGTCA+AGG | - | chr1_4:16512861-16512880 | Msa0153260:intron | 45.0% | |
| !! | TCTCATAAGACCGACTCGTA+AGG | - | chr1_4:16513245-16513264 | Msa0153260:intron | 45.0% |
| !! | TAAGACCGACTCGTAAGGTA+AGG | - | chr1_4:16513250-16513269 | Msa0153260:intron | 45.0% |
| ACGAGGTAGTGTGGACTTAT+TGG | + | chr1_4:16513330-16513349 | None:intergenic | 45.0% | |
| TGTTGTAACACGAGGTAGTG+TGG | + | chr1_4:16513339-16513358 | None:intergenic | 45.0% | |
| GGTACATACTAGACCATGAC+TGG | - | chr1_4:16514111-16514130 | Msa0153260:intron | 45.0% | |
| ! | TCTGCTCTTTTACCACTAGG+TGG | + | chr1_4:16514879-16514898 | None:intergenic | 45.0% |
| TCTTCACATTCTTGCTGGCA+AGG | + | chr1_4:16515128-16515147 | None:intergenic | 45.0% | |
| ! | AACGCTTGCTAAGCTTTCTG+AGG | - | chr1_4:16515199-16515218 | Msa0153260:intron | 45.0% |
| !!! | CTATTTTATTAAATTATTAT+TGG | + | chr1_4:16513402-16513421 | None:intergenic | 5.0% |
| TGGAAGCAAGAGATCACCAG+AGG | - | chr1_4:16512405-16512424 | Msa0153260:CDS | 50.0% | |
| GGAAGCAAGAGATCACCAGA+GGG | - | chr1_4:16512406-16512425 | Msa0153260:CDS | 50.0% | |
| AGGAGAATCCTGCCACAGAA+AGG | + | chr1_4:16512629-16512648 | None:intergenic | 50.0% | |
| ACAAGATCAGTTGCGCATGC+AGG | + | chr1_4:16513787-16513806 | None:intergenic | 50.0% | |
| ! | GTGCATTGCAGCAGGTTTTG+TGG | - | chr1_4:16514133-16514152 | Msa0153260:intron | 50.0% |
| GCTTAGCAAGCGTTTGTGCT+AGG | + | chr1_4:16515193-16515212 | None:intergenic | 50.0% | |
| ! | GTCGATGGGGCATCTCATGT+GGG | + | chr1_4:16513601-16513620 | None:intergenic | 55.0% |
| ! | TGTCGATGGGGCATCTCATG+TGG | + | chr1_4:16513602-16513621 | None:intergenic | 55.0% |
| TCCACGACGCCATGCCAAAT+TGG | - | chr1_4:16513741-16513760 | Msa0153260:intron | 55.0% | |
| CTGCTGCAATGCACCAGTCA+TGG | + | chr1_4:16514127-16514146 | None:intergenic | 55.0% | |
| CATGACTGGTGCATTGCAGC+AGG | - | chr1_4:16514125-16514144 | Msa0153260:intron | 55.0% | |
| TGTGTGCGCAGTGCAGCAAG+TGG | - | chr1_4:16512385-16512404 | Msa0153260:CDS | 60.0% | |
| GCCAATTTGGCATGGCGTCG+TGG | + | chr1_4:16513745-16513764 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16512291 | 16515271 | 16512291 | ID=Msa0153260;Name=Msa0153260 |
| chr1_4 | mRNA | 16512291 | 16515271 | 16512291 | ID=Msa0153260-mRNA-1;Parent=Msa0153260;Name=Msa0153260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.8|0.5|0.83|1|1|6|0|141 |
| chr1_4 | exon | 16512291 | 16512428 | 16512291 | ID=Msa0153260-mRNA-1:exon:6355;Parent=Msa0153260-mRNA-1 |
| chr1_4 | exon | 16513451 | 16513528 | 16513451 | ID=Msa0153260-mRNA-1:exon:6354;Parent=Msa0153260-mRNA-1 |
| chr1_4 | exon | 16514626 | 16514723 | 16514626 | ID=Msa0153260-mRNA-1:exon:6353;Parent=Msa0153260-mRNA-1 |
| chr1_4 | exon | 16514874 | 16514922 | 16514874 | ID=Msa0153260-mRNA-1:exon:6352;Parent=Msa0153260-mRNA-1 |
| chr1_4 | exon | 16515112 | 16515166 | 16515112 | ID=Msa0153260-mRNA-1:exon:6351;Parent=Msa0153260-mRNA-1 |
| chr1_4 | exon | 16515267 | 16515271 | 16515267 | ID=Msa0153260-mRNA-1:exon:6350;Parent=Msa0153260-mRNA-1 |
| chr1_4 | CDS | 16515267 | 16515271 | 16515267 | ID=Msa0153260-mRNA-1:cds;Parent=Msa0153260-mRNA-1 |
| chr1_4 | CDS | 16515112 | 16515166 | 16515112 | ID=Msa0153260-mRNA-1:cds;Parent=Msa0153260-mRNA-1 |
| chr1_4 | CDS | 16514874 | 16514922 | 16514874 | ID=Msa0153260-mRNA-1:cds;Parent=Msa0153260-mRNA-1 |
| chr1_4 | CDS | 16514626 | 16514723 | 16514626 | ID=Msa0153260-mRNA-1:cds;Parent=Msa0153260-mRNA-1 |
| chr1_4 | CDS | 16513451 | 16513528 | 16513451 | ID=Msa0153260-mRNA-1:cds;Parent=Msa0153260-mRNA-1 |
| chr1_4 | CDS | 16512291 | 16512428 | 16512291 | ID=Msa0153260-mRNA-1:cds;Parent=Msa0153260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
