AlfalfaGEDB | Msa0153370

M. sativa cultivar zhongmu-4 / Msa0153370

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153370	XP_003589683.1	97.316	1006	24	1	1	1006	1	1003	0.0	2027

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153370	sp\|Q8RY95\|SPL14_ARATH	49.153	1062	435	27	16	1006	8	1035	0.0	880

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153370	G7IA23	97.316	1006	24	1	1	1006	1	1003	0.0	2027

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TFs/TRs:

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Gene ID	Type	Classification
Msa0153370	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153370	MtrunA17_Chr1g0162871	97.316	1006	24	1	1	1006	1	1003	0.0	2027
Msa0153370	MtrunA17_Chr7g0270541	33.779	598	355	13	437	1005	415	1000	3.96e-93	318
Msa0153370	MtrunA17_Chr7g0270541	62.698	126	44	1	77	199	112	237	1.41e-39	159
Msa0153370	MtrunA17_Chr1g0194121	33.274	565	343	11	467	1005	446	1002	1.94e-87	302
Msa0153370	MtrunA17_Chr1g0194121	62.069	116	43	1	77	192	117	231	7.38e-37	150
Msa0153370	MtrunA17_Chr2g0302791	31.336	584	338	16	467	1006	461	1025	7.43e-82	287
Msa0153370	MtrunA17_Chr2g0302791	54.930	142	58	1	77	212	103	244	8.34e-41	163
Msa0153370	MtrunA17_Chr8g0334671	56.897	116	39	1	78	182	147	262	8.93e-33	130
Msa0153370	MtrunA17_Chr8g0360361	64.130	92	33	0	105	196	63	154	2.28e-32	124
Msa0153370	MtrunA17_Chr8g0386271	67.901	81	26	0	107	187	99	179	2.58e-32	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153370	AT1G20980.1	49.153	1062	435	27	16	1006	8	1035	0.0	880
Msa0153370	AT1G76580.1	47.570	1070	439	28	3	1006	7	1020	0.0	850
Msa0153370	AT1G76580.2	45.879	728	288	23	3	665	7	693	9.58e-173	521
Msa0153370	AT1G76580.3	45.868	726	287	23	3	663	7	691	1.20e-171	518
Msa0153370	AT2G47070.2	33.755	554	319	13	469	1005	229	751	7.61e-87	296
Msa0153370	AT2G47070.2	58.025	81	32	1	132	212	2	80	2.09e-20	97.8
Msa0153370	AT2G47070.1	33.694	555	320	13	468	1005	357	880	9.12e-86	296
Msa0153370	AT2G47070.1	42.439	205	80	4	36	212	15	209	4.52e-38	154
Msa0153370	AT3G60030.1	35.357	560	309	17	468	1005	398	926	1.33e-85	296
Msa0153370	AT3G60030.1	56.618	136	57	2	78	212	97	231	6.72e-38	154

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Find 293 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCAACACCCAATTC+AGG	0.301987	1_4:-16669643	None:intergenic
AAACAGCGACCTAGAACACT+AGG	0.611826	1_4:-16667563	None:intergenic
AAACCCTTGTGGATGAAAAC+GGG	0.509681	1_4:+16669021	Msa0153370:CDS
AAACTTAAATCTTGGAAGCA+CGG	0.566490	1_4:+16664264	Msa0153370:CDS
AAAGCCTCATCCCTTGACTT+GGG	0.557399	1_4:-16667884	None:intergenic
AAAGCTGGTTATGCATCTTC+GGG	0.352663	1_4:+16666272	Msa0153370:CDS
AAAGCTTCTAAGGCTTTGTT+AGG	0.256564	1_4:+16664430	Msa0153370:CDS
AAATCCTTAGTTAACGGGGC+AGG	0.442282	1_4:-16665771	None:intergenic
AAATGATGATTCAGATTGCC+AGG	0.494257	1_4:+16665905	Msa0153370:CDS
AAATGGAAAATCATGTCAGA+AGG	0.613708	1_4:-16670029	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCACATCCAAAACGATAAT+TGG	+	chr1_4:16664146-16664165	Msa0153370:CDS	30.0%
ATAATTGGAACCCTAAAGAA+TGG	+	chr1_4:16664161-16664180	Msa0153370:CDS	30.0%
AAACTTAAATCTTGGAAGCA+CGG	+	chr1_4:16664264-16664283	Msa0153370:CDS	30.0%
TAGGAAAATTTGAGGAAAGA+AGG	+	chr1_4:16665571-16665590	Msa0153370:intron	30.0%
AAGAAAATCCTTAGTTAACG+GGG	-	chr1_4:16665778-16665797	None:intergenic	30.0%
CAAGAAAATCCTTAGTTAAC+GGG	-	chr1_4:16665779-16665798	None:intergenic	30.0%
GCAAGAAAATCCTTAGTTAA+CGG	-	chr1_4:16665780-16665799	None:intergenic	30.0%
ATTAGAGGTCTCAATTCTAA+TGG	+	chr1_4:16666107-16666126	Msa0153370:CDS	30.0%
AATTCTAATGGTATTTCCAC+TGG	+	chr1_4:16666119-16666138	Msa0153370:CDS	30.0%
TAGTAGTACAACTATGACTT+TGG	-	chr1_4:16666175-16666194	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	16663777	16670125	16663777	ID=Msa0153370;Name=Msa0153370
chr1_4	mRNA	16663777	16670125	16663777	ID=Msa0153370-mRNA-1;Parent=Msa0153370;Name=Msa0153370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=254\|1\|1\|1\|1\|1\|9\|695\|1006
chr1_4	exon	16663777	16664676	16663777	ID=Msa0153370-mRNA-1:exon:6372;Parent=Msa0153370-mRNA-1
chr1_4	exon	16665574	16666334	16665574	ID=Msa0153370-mRNA-1:exon:6373;Parent=Msa0153370-mRNA-1
chr1_4	exon	16666472	16666546	16666472	ID=Msa0153370-mRNA-1:exon:6374;Parent=Msa0153370-mRNA-1
chr1_4	exon	16666677	16666784	16666677	ID=Msa0153370-mRNA-1:exon:6375;Parent=Msa0153370-mRNA-1
chr1_4	exon	16666872	16666989	16666872	ID=Msa0153370-mRNA-1:exon:6376;Parent=Msa0153370-mRNA-1
chr1_4	exon	16667227	16667362	16667227	ID=Msa0153370-mRNA-1:exon:6377;Parent=Msa0153370-mRNA-1
chr1_4	exon	16667448	16667592	16667448	ID=Msa0153370-mRNA-1:exon:6378;Parent=Msa0153370-mRNA-1
chr1_4	exon	16667734	16668336	16667734	ID=Msa0153370-mRNA-1:exon:6379;Parent=Msa0153370-mRNA-1
chr1_4	exon	16669002	16670125	16669002	ID=Msa0153370-mRNA-1:exon:6380;Parent=Msa0153370-mRNA-1
chr1_4	five_prime_UTR	16663777	16664030	16663777	ID=Msa0153370-mRNA-1:five_prime_utr;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16664031	16664676	16664031	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16665574	16666334	16665574	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16666472	16666546	16666472	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16666677	16666784	16666677	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16666872	16666989	16666872	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16667227	16667362	16667227	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16667448	16667592	16667448	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16667734	16668336	16667734	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	CDS	16669002	16669430	16669002	ID=Msa0153370-mRNA-1:cds;Parent=Msa0153370-mRNA-1
chr1_4	three_prime_UTR	16669431	16670125	16669431	ID=Msa0153370-mRNA-1:three_prime_utr;Parent=Msa0153370-mRNA-1

Gene Sequence

>Msa0153370

ATGGAAAAAGTAGCTCCTCCTCTTCTTCCTCTTCATCCTCCTATGTTATCATCACATCAATTTTACGATTCATCAACCACCAAAAAACGTGATCTATTATCATCATACGACGTCGTTCACATCCAAAACGATAATTGGAACCCTAAAGAATGGAATTGGGACAGTATCCGTTTCATGACAGCAAAATCAACGACGACAACAACAGTAGAACCACAACAGGCCGAAGAATCTCTAAACTTAAATCTTGGAAGCACGGGACTCGTACGAGCAAACAAACGAATCCGTTCAGGATCTCCAACATCGGCTTCGTATCCGATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGACGTCATAAGGTGTGTGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGGTGGAGTTTGATGAAGGAAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGACGTCGGAGGAAAACGCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCTCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAGATTCTGAATAGGATCCCTTTACCAGCTGATCTTACTGCGAAGTTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTGCAAATGCAAACTTCACCCTCCTATCATCACCGCGATGATCAACCGAACAACACCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACGACTCCATCCACACCTGCTCAAAATGGCGGCAACAGGTCCACAAGTAGTGCCGATCATATGAGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCGTCTCCAGAAAACTACAGCCCGTCTAAATTGCCATCTTCGCGAAAGTATTTTTCATCGGAAAGTAGTAATCCTGTGGATGAAAGGTCGCCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGTATTAGAGGTCTCAATTCTAATGGTATTTCCACTGGATTTGGAGGCAATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATTCAACAATCTAGTTCAGTTCAAAGTGTACCATTTAAAGCTGGTTATGCATCTTCGGGTTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGATTTACAATTGGCTTTCTACACGACCATCAGACTTGGAGAGTTACATAAGGCCTGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAATTAGAAGAAAACTTCGTCCGACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAGGATACGCATGTGCAAACCATGGGGAACGTGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCTATTGTCGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTCTCTGCTCCTGGCACAAAGATTCATTGCACTGATGCTGACTGTTATACATCATCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGCGGTTTTGAAGTTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGATGAAAAGATGTGTGATGCCATTTCAGAGGAGCATGAACATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGAACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGATGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATGCTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAAGGTCAGTGGAGATGCTGAAAGCAATCCAACTTCTAAATAGAGCAGTGAAAAGAAAGTGCACAAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCGAATCTCGAGGGCCCTGGCGGTATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAGGAGATTGGGTTGAAGTGCTGGGAAACCCTTGTGGATGAAAACGGGCAGACTCCACATGCCTATGCCATGATGAGAAATAATCACTCTTATAATATGTTGGTTGCCCGTAAACGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCACCCATCACCGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGAATTATGGCACAATGTAA

Protein sequence

>Msa0153370

MEKVAPPLLPLHPPMLSSHQFYDSSTTKKRDLLSSYDVVHIQNDNWNPKEWNWDSIRFMTAKSTTTTTVEPQQAEESLNLNLGSTGLVRANKRIRSGSPTSASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMQTSPSYHHRDDQPNNTPPAPLTKDFLAVLSTTPSTPAQNGGNRSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENYSPSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRGLNSNGISTGFGGNANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFVRRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTDADCYTSSEVIGSGDPGMVYDEIKLSGFEVQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEDEKMCDAISEEHEHNFGRPKSRDEALHFLNELGWLFQRERFSNVNEVPDYSLDRFKFVLMFSVERNCCMLVKTLLDMLVDKHFEGEGLSTRSVEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYAMMRNNHSYNMLVARKRSDRQRSEVSVRIDNEIEHPSPGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGTM*