Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153540 | RHN78227.1 | 76.147 | 327 | 23 | 3 | 2 | 285 | 25 | 339 | 3.09e-155 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153540 | sp|Q8RYD1|REM16_ARATH | 24.306 | 288 | 164 | 7 | 2 | 258 | 37 | 301 | 5.45e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153540 | A0A396JU70 | 76.147 | 327 | 23 | 3 | 2 | 285 | 25 | 339 | 1.48e-155 | 447 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153540 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153540 | MtrunA17_Chr1g0163221 | 76.147 | 327 | 23 | 3 | 2 | 285 | 25 | 339 | 2.85e-159 | 447 |
| Msa0153540 | MtrunA17_Chr4g0067431 | 63.380 | 284 | 86 | 7 | 2 | 271 | 29 | 308 | 9.70e-116 | 336 |
| Msa0153540 | MtrunA17_Chr6g0467351 | 62.745 | 204 | 62 | 3 | 2 | 197 | 29 | 226 | 1.39e-82 | 248 |
| Msa0153540 | MtrunA17_Chr1g0163061 | 51.055 | 237 | 62 | 4 | 2 | 184 | 29 | 265 | 2.04e-52 | 172 |
| Msa0153540 | MtrunA17_Chr1g0208771 | 27.881 | 269 | 173 | 8 | 4 | 258 | 13 | 274 | 8.35e-28 | 111 |
| Msa0153540 | MtrunA17_Chr1g0163071 | 28.521 | 284 | 172 | 8 | 4 | 264 | 2 | 277 | 4.17e-25 | 102 |
| Msa0153540 | MtrunA17_Chr1g0163131 | 30.556 | 288 | 159 | 12 | 2 | 267 | 32 | 300 | 2.04e-24 | 100 |
| Msa0153540 | MtrunA17_Chr1g0163251 | 28.716 | 296 | 179 | 11 | 2 | 286 | 19 | 293 | 7.53e-24 | 99.8 |
| Msa0153540 | MtrunA17_Chr6g0467361 | 64.557 | 79 | 24 | 3 | 197 | 272 | 7 | 84 | 2.68e-23 | 91.7 |
| Msa0153540 | MtrunA17_Chr1g0163201 | 28.819 | 288 | 168 | 9 | 4 | 268 | 19 | 292 | 3.15e-23 | 98.2 |
| Msa0153540 | MtrunA17_Chr1g0163181 | 27.778 | 288 | 173 | 11 | 2 | 271 | 19 | 289 | 5.59e-23 | 97.8 |
| Msa0153540 | MtrunA17_Chr7g0233561 | 28.014 | 282 | 165 | 10 | 2 | 260 | 32 | 298 | 3.14e-22 | 94.4 |
| Msa0153540 | MtrunA17_Chr7g0233541 | 28.470 | 281 | 161 | 10 | 4 | 260 | 2 | 266 | 1.23e-20 | 89.7 |
| Msa0153540 | MtrunA17_Chr8g0390841 | 26.545 | 275 | 182 | 9 | 2 | 263 | 53 | 320 | 1.28e-20 | 91.7 |
| Msa0153540 | MtrunA17_Chr3g0131891 | 27.941 | 272 | 168 | 9 | 2 | 260 | 33 | 289 | 1.30e-20 | 90.1 |
| Msa0153540 | MtrunA17_Chr1g0163261 | 27.402 | 281 | 169 | 10 | 2 | 271 | 23 | 279 | 1.31e-20 | 89.7 |
| Msa0153540 | MtrunA17_Chr7g0233521 | 26.996 | 263 | 171 | 7 | 4 | 260 | 2 | 249 | 7.90e-20 | 87.0 |
| Msa0153540 | MtrunA17_Chr3g0103181 | 26.667 | 285 | 162 | 11 | 2 | 271 | 24 | 276 | 1.31e-18 | 83.6 |
| Msa0153540 | MtrunA17_Chr3g0103171 | 28.014 | 282 | 164 | 10 | 4 | 271 | 6 | 262 | 1.59e-18 | 83.2 |
| Msa0153540 | MtrunA17_Chr1g0163231 | 27.076 | 277 | 154 | 9 | 2 | 262 | 23 | 267 | 9.03e-18 | 81.6 |
| Msa0153540 | MtrunA17_Chr7g0233531 | 27.509 | 269 | 162 | 8 | 4 | 260 | 2 | 249 | 2.53e-17 | 80.1 |
| Msa0153540 | MtrunA17_Chr1g0171611 | 27.612 | 268 | 152 | 9 | 2 | 262 | 23 | 255 | 4.45e-17 | 79.7 |
| Msa0153540 | MtrunA17_Chr3g0103191 | 26.360 | 239 | 139 | 8 | 2 | 229 | 24 | 236 | 3.31e-16 | 76.6 |
| Msa0153540 | MtrunA17_Chr1g0163121 | 34.884 | 129 | 65 | 5 | 1 | 114 | 8 | 132 | 6.78e-15 | 70.5 |
| Msa0153540 | MtrunA17_Chr1g0162161 | 32.143 | 168 | 81 | 8 | 1 | 148 | 1 | 155 | 9.56e-15 | 70.5 |
| Msa0153540 | MtrunA17_Chr1g0154151 | 26.102 | 295 | 173 | 10 | 1 | 260 | 17 | 301 | 1.12e-14 | 73.2 |
| Msa0153540 | MtrunA17_Chr6g0476181 | 39.316 | 117 | 58 | 6 | 4 | 112 | 2 | 113 | 1.52e-14 | 70.1 |
| Msa0153540 | MtrunA17_Chr5g0419201 | 33.548 | 155 | 84 | 5 | 4 | 142 | 32 | 183 | 9.38e-14 | 68.6 |
| Msa0153540 | MtrunA17_Chr1g0163081 | 39.583 | 96 | 49 | 4 | 4 | 94 | 6 | 97 | 1.29e-13 | 67.0 |
| Msa0153540 | MtrunA17_Chr3g0077451 | 25.899 | 278 | 136 | 10 | 1 | 267 | 9 | 227 | 5.99e-13 | 67.0 |
| Msa0153540 | MtrunA17_Chr1g0163101 | 32.450 | 151 | 73 | 7 | 2 | 135 | 31 | 169 | 9.54e-13 | 65.5 |
| Msa0153540 | MtrunA17_Chr1g0154131 | 25.926 | 270 | 182 | 7 | 1 | 260 | 195 | 456 | 1.04e-12 | 68.2 |
| Msa0153540 | MtrunA17_Chr7g0233571 | 36.364 | 99 | 57 | 2 | 2 | 95 | 24 | 121 | 1.44e-11 | 62.8 |
| Msa0153540 | MtrunA17_Chr1g0163241 | 30.469 | 128 | 80 | 4 | 4 | 126 | 23 | 146 | 1.84e-11 | 61.6 |
| Msa0153540 | MtrunA17_Chr1g0154161 | 25.899 | 278 | 163 | 12 | 1 | 260 | 43 | 295 | 1.93e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153540 | AT4G33280.1 | 24.306 | 288 | 164 | 7 | 2 | 258 | 37 | 301 | 5.54e-13 | 68.6 |
Find 30 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_4:+16938469 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_4:-16938384 | Msa0153540:CDS |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.248158 | 1_4:+16939613 | None:intergenic |
| CTTCATCATCACGCGGTAAA+AGG | 0.264439 | 1_4:-16939342 | Msa0153540:CDS |
| CTCTTTAATGTGATTGTATT+CGG | 0.267780 | 1_4:-16939454 | Msa0153540:intron |
| GAAGGGCTGTGAATTGAAAA+AGG | 0.337335 | 1_4:-16938102 | Msa0153540:CDS |
| TACTCTAAGGTTTCCAAACT+TGG | 0.337891 | 1_4:-16939608 | Msa0153540:CDS |
| AAGTAGCTGTAATGATATTA+AGG | 0.342032 | 1_4:-16939082 | Msa0153540:CDS |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_4:-16939621 | Msa0153540:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_4:+16938388 | None:intergenic |
| ATCAACTCGAATGAACAAAA+AGG | 0.376629 | 1_4:-16939274 | Msa0153540:CDS |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_4:+16938318 | None:intergenic |
| TGTTTCTTGACAAATTCATT+TGG | 0.414955 | 1_4:+16938525 | None:intergenic |
| TCTTCACTAGTTTCTCTTGA+AGG | 0.416839 | 1_4:+16939406 | None:intergenic |
| TGAATTTGTCAAGAAACATA+TGG | 0.468376 | 1_4:-16938520 | Msa0153540:CDS |
| ATACATTGATAGAGATCTCT+TGG | 0.475972 | 1_4:-16938977 | Msa0153540:intron |
| TCTAAGGTTTCCAAACTTGG+TGG | 0.476134 | 1_4:-16939605 | Msa0153540:CDS |
| CACACTTTCATAGACGGTGC+TGG | 0.484435 | 1_4:+16939310 | None:intergenic |
| CTTCACTAGTTTCTCTTGAA+GGG | 0.485568 | 1_4:+16939407 | None:intergenic |
| CAAGAAACATATGGACATGA+TGG | 0.508763 | 1_4:-16938511 | Msa0153540:CDS |
| TTCTTACACACTTTCATAGA+CGG | 0.530584 | 1_4:+16939304 | None:intergenic |
| GGGTTGGCTTGAATTTGTGA+AGG | 0.547501 | 1_4:-16938120 | Msa0153540:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_4:-16939646 | Msa0153540:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_4:-16938419 | Msa0153540:CDS |
| GGTTGGCTTGAATTTGTGAA+GGG | 0.587368 | 1_4:-16938119 | Msa0153540:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_4:-16938423 | Msa0153540:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.594864 | 1_4:+16939614 | None:intergenic |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1_4:-16938507 | Msa0153540:CDS |
| AAGGATCTAAGCATGAGAAG+AGG | 0.639289 | 1_4:-16939255 | Msa0153540:CDS |
| GAGAATCCTTCATCATCACG+CGG | 0.748401 | 1_4:-16939349 | Msa0153540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTCTTATTTTAT+AGG | - | chr1_4:16938676-16938695 | Msa0153540:intron | 10.0% |
| !!! | AACAATTTATGAAAATTTTA+TGG | - | chr1_4:16939631-16939650 | Msa0153540:CDS | 10.0% |
| !!! | TATTTTTTGTCTTATTTTAT+AGG | - | chr1_4:16938676-16938695 | Msa0153540:intron | 10.0% |
| !!! | AACAATTTATGAAAATTTTA+TGG | - | chr1_4:16939631-16939650 | Msa0153540:CDS | 10.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | + | chr1_4:16939066-16939085 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | - | chr1_4:16939275-16939294 | Msa0153540:CDS | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | + | chr1_4:16939558-16939577 | None:intergenic | 15.0% |
| !! | GGAAATTCATTTAATATAAT+GGG | - | chr1_4:16939595-16939614 | Msa0153540:CDS | 15.0% |
| !! | AATATAAAAAAGTCTCATTA+TGG | + | chr1_4:16939066-16939085 | None:intergenic | 15.0% |
| !!! | TGAAATTATTAATCTAAAAC+AGG | - | chr1_4:16939275-16939294 | Msa0153540:CDS | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | + | chr1_4:16939558-16939577 | None:intergenic | 15.0% |
| !! | GGAAATTCATTTAATATAAT+GGG | - | chr1_4:16939595-16939614 | Msa0153540:CDS | 15.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | - | chr1_4:16938699-16938718 | Msa0153540:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | - | chr1_4:16938891-16938910 | Msa0153540:intron | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | - | chr1_4:16939221-16939240 | Msa0153540:CDS | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | + | chr1_4:16939259-16939278 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1_4:16939361-16939380 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1_4:16939362-16939381 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1_4:16939361-16939380 | Msa0153540:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1_4:16939443-16939462 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1_4:16939444-16939463 | Msa0153540:intron | 20.0% |
| !! | TATATTAAATGAATTTCCGA+TGG | + | chr1_4:16939593-16939612 | None:intergenic | 20.0% |
| !! | CGGAAATTCATTTAATATAA+TGG | - | chr1_4:16939594-16939613 | Msa0153540:CDS | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | - | chr1_4:16939676-16939695 | Msa0153540:intron | 20.0% |
| !!! | TGTTGCTACTAATTTTTTTT+TGG | - | chr1_4:16938699-16938718 | Msa0153540:intron | 20.0% |
| !!! | TGATCACTTTTATTTTTGAA+AGG | - | chr1_4:16938891-16938910 | Msa0153540:intron | 20.0% |
| !!! | TAAAATGTATGTGTATTGAT+AGG | - | chr1_4:16939221-16939240 | Msa0153540:CDS | 20.0% |
| !! | TTCAAGATAAAGTAGTTAAA+TGG | + | chr1_4:16939259-16939278 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1_4:16939361-16939380 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1_4:16939362-16939381 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1_4:16939361-16939380 | Msa0153540:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1_4:16939443-16939462 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1_4:16939444-16939463 | Msa0153540:intron | 20.0% |
| !! | TATATTAAATGAATTTCCGA+TGG | + | chr1_4:16939593-16939612 | None:intergenic | 20.0% |
| !! | CGGAAATTCATTTAATATAA+TGG | - | chr1_4:16939594-16939613 | Msa0153540:CDS | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | - | chr1_4:16939676-16939695 | Msa0153540:intron | 20.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | + | chr1_4:16938176-16938195 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | + | chr1_4:16938177-16938196 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | - | chr1_4:16938177-16938196 | Msa0153540:intron | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | - | chr1_4:16938278-16938297 | Msa0153540:intron | 25.0% |
| !! | TTTGAATGAATCGCAATTTT+TGG | - | chr1_4:16938328-16938347 | Msa0153540:intron | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | - | chr1_4:16938374-16938393 | Msa0153540:CDS | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | - | chr1_4:16938723-16938742 | Msa0153540:intron | 25.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | - | chr1_4:16938746-16938765 | Msa0153540:intron | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | + | chr1_4:16938791-16938810 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | - | chr1_4:16938997-16939016 | Msa0153540:CDS | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | + | chr1_4:16939056-16939075 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | + | chr1_4:16939306-16939325 | None:intergenic | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | - | chr1_4:16939308-16939327 | Msa0153540:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1_4:16939513-16939532 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1_4:16939515-16939534 | Msa0153540:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1_4:16939521-16939540 | Msa0153540:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | - | chr1_4:16939546-16939565 | Msa0153540:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | - | chr1_4:16939574-16939593 | Msa0153540:CDS | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | + | chr1_4:16938176-16938195 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | + | chr1_4:16938177-16938196 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | - | chr1_4:16938177-16938196 | Msa0153540:intron | 25.0% |
| !! | TATGATGTTACATTTTGCAA+TGG | - | chr1_4:16938278-16938297 | Msa0153540:intron | 25.0% |
| !! | TTTGAATGAATCGCAATTTT+TGG | - | chr1_4:16938328-16938347 | Msa0153540:intron | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+CGG | - | chr1_4:16938374-16938393 | Msa0153540:CDS | 25.0% |
| !!! | GAATTCTCAATTTTTTTAGC+AGG | - | chr1_4:16938723-16938742 | Msa0153540:intron | 25.0% |
| ! | AAGTAGCTGTAATGATATTA+AGG | - | chr1_4:16938746-16938765 | Msa0153540:intron | 25.0% |
| ! | CAAAAAATTTCTTCACTTTC+TGG | + | chr1_4:16938791-16938810 | None:intergenic | 25.0% |
| ! | CTATTCTTTGATGAGATTAA+TGG | - | chr1_4:16938997-16939016 | Msa0153540:CDS | 25.0% |
| ! | AGTCTCATTATGGTATAATT+TGG | + | chr1_4:16939056-16939075 | None:intergenic | 25.0% |
| ! | TGTTTCTTGACAAATTCATT+TGG | + | chr1_4:16939306-16939325 | None:intergenic | 25.0% |
| ! | TGAATTTGTCAAGAAACATA+TGG | - | chr1_4:16939308-16939327 | Msa0153540:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1_4:16939513-16939532 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1_4:16939515-16939534 | Msa0153540:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1_4:16939521-16939540 | Msa0153540:CDS | 25.0% |
| !!! | TTGAAAACTCCTTATTTTGA+AGG | - | chr1_4:16939546-16939565 | Msa0153540:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | - | chr1_4:16939574-16939593 | Msa0153540:CDS | 25.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1_4:16938182-16938201 | Msa0153540:intron | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr1_4:16938240-16938259 | Msa0153540:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr1_4:16938241-16938260 | Msa0153540:intron | 30.0% |
| ! | ATGTTACATTTTGCAATGGT+TGG | - | chr1_4:16938282-16938301 | Msa0153540:intron | 30.0% |
| TTCTTACACACTTTCATAGA+CGG | + | chr1_4:16938527-16938546 | None:intergenic | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | - | chr1_4:16938554-16938573 | Msa0153540:intron | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | - | chr1_4:16938851-16938870 | Msa0153540:intron | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | + | chr1_4:16939113-16939132 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | - | chr1_4:16939110-16939129 | Msa0153540:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr1_4:16939474-16939493 | Msa0153540:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1_4:16938182-16938201 | Msa0153540:intron | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | - | chr1_4:16938240-16938259 | Msa0153540:intron | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | - | chr1_4:16938241-16938260 | Msa0153540:intron | 30.0% |
| ! | ATGTTACATTTTGCAATGGT+TGG | - | chr1_4:16938282-16938301 | Msa0153540:intron | 30.0% |
| TTCTTACACACTTTCATAGA+CGG | + | chr1_4:16938527-16938546 | None:intergenic | 30.0% | |
| ATCAACTCGAATGAACAAAA+AGG | - | chr1_4:16938554-16938573 | Msa0153540:intron | 30.0% | |
| ATACATTGATAGAGATCTCT+TGG | - | chr1_4:16938851-16938870 | Msa0153540:intron | 30.0% | |
| CCAATCACAATCTATTATGT+AGG | + | chr1_4:16939113-16939132 | None:intergenic | 30.0% | |
| CCTACATAATAGATTGTGAT+TGG | - | chr1_4:16939110-16939129 | Msa0153540:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | - | chr1_4:16939474-16939493 | Msa0153540:CDS | 30.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | - | chr1_4:16938171-16938190 | Msa0153540:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1_4:16938207-16938226 | Msa0153540:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr1_4:16938217-16938236 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr1_4:16938218-16938237 | None:intergenic | 35.0% | |
| !! | TACTCTAAGGTTTCCAAACT+TGG | - | chr1_4:16938220-16938239 | Msa0153540:intron | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | + | chr1_4:16938236-16938255 | None:intergenic | 35.0% |
| GTGATTGTATTCGGTAAATG+CGG | - | chr1_4:16938383-16938402 | Msa0153540:CDS | 35.0% | |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | + | chr1_4:16938424-16938443 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | + | chr1_4:16938425-16938444 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | - | chr1_4:16938614-16938633 | Msa0153540:intron | 35.0% |
| CAAGAAACATATGGACATGA+TGG | - | chr1_4:16939317-16939336 | Msa0153540:CDS | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | - | chr1_4:16939321-16939340 | Msa0153540:CDS | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | - | chr1_4:16939405-16939424 | Msa0153540:CDS | 35.0% | |
| AAGGGCTGTGAATTGAAAAA+GGG | - | chr1_4:16939727-16939746 | Msa0153540:intron | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | - | chr1_4:16938171-16938190 | Msa0153540:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1_4:16938207-16938226 | Msa0153540:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr1_4:16938217-16938236 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr1_4:16938218-16938237 | None:intergenic | 35.0% | |
| !! | TACTCTAAGGTTTCCAAACT+TGG | - | chr1_4:16938220-16938239 | Msa0153540:intron | 35.0% |
| ! | ACTTTCTTTTCCACCAAGTT+TGG | + | chr1_4:16938236-16938255 | None:intergenic | 35.0% |
| GTGATTGTATTCGGTAAATG+CGG | - | chr1_4:16938383-16938402 | Msa0153540:CDS | 35.0% | |
| ! | CTTCACTAGTTTCTCTTGAA+GGG | + | chr1_4:16938424-16938443 | None:intergenic | 35.0% |
| ! | TCTTCACTAGTTTCTCTTGA+AGG | + | chr1_4:16938425-16938444 | None:intergenic | 35.0% |
| !! | GTTTTTGAGCATGTGAACAA+TGG | - | chr1_4:16938614-16938633 | Msa0153540:intron | 35.0% |
| CAAGAAACATATGGACATGA+TGG | - | chr1_4:16939317-16939336 | Msa0153540:CDS | 35.0% | |
| ! | AAACATATGGACATGATGGA+AGG | - | chr1_4:16939321-16939340 | Msa0153540:CDS | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | - | chr1_4:16939405-16939424 | Msa0153540:CDS | 35.0% | |
| AAGGGCTGTGAATTGAAAAA+GGG | - | chr1_4:16939727-16939746 | Msa0153540:intron | 35.0% | |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | - | chr1_4:16938223-16938242 | Msa0153540:intron | 40.0% |
| AAGGATCTAAGCATGAGAAG+AGG | - | chr1_4:16938573-16938592 | Msa0153540:intron | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | - | chr1_4:16938618-16938637 | Msa0153540:intron | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr1_4:16939409-16939428 | Msa0153540:CDS | 40.0% |
| ! | TTCATGTGTTGGTCTATTGC+AGG | - | chr1_4:16939687-16939706 | Msa0153540:intron | 40.0% |
| ! | TCATGTGTTGGTCTATTGCA+GGG | - | chr1_4:16939688-16939707 | Msa0153540:intron | 40.0% |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | - | chr1_4:16939709-16939728 | Msa0153540:intron | 40.0% |
| GAAGGGCTGTGAATTGAAAA+AGG | - | chr1_4:16939726-16939745 | Msa0153540:intron | 40.0% | |
| ! | TCTAAGGTTTCCAAACTTGG+TGG | - | chr1_4:16938223-16938242 | Msa0153540:intron | 40.0% |
| AAGGATCTAAGCATGAGAAG+AGG | - | chr1_4:16938573-16938592 | Msa0153540:intron | 40.0% | |
| TTGAGCATGTGAACAATGGT+TGG | - | chr1_4:16938618-16938637 | Msa0153540:intron | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr1_4:16939409-16939428 | Msa0153540:CDS | 40.0% |
| ! | TTCATGTGTTGGTCTATTGC+AGG | - | chr1_4:16939687-16939706 | Msa0153540:intron | 40.0% |
| ! | TCATGTGTTGGTCTATTGCA+GGG | - | chr1_4:16939688-16939707 | Msa0153540:intron | 40.0% |
| !! | GGTTGGCTTGAATTTGTGAA+GGG | - | chr1_4:16939709-16939728 | Msa0153540:intron | 40.0% |
| GAAGGGCTGTGAATTGAAAA+AGG | - | chr1_4:16939726-16939745 | Msa0153540:intron | 40.0% | |
| GAGAATCCTTCATCATCACG+CGG | - | chr1_4:16938479-16938498 | Msa0153540:CDS | 45.0% | |
| !! | CTTTTACCGCGTGATGATGA+AGG | + | chr1_4:16938488-16938507 | None:intergenic | 45.0% |
| CTTCATCATCACGCGGTAAA+AGG | - | chr1_4:16938486-16938505 | Msa0153540:CDS | 45.0% | |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | - | chr1_4:16939708-16939727 | Msa0153540:intron | 45.0% |
| GAGAATCCTTCATCATCACG+CGG | - | chr1_4:16938479-16938498 | Msa0153540:CDS | 45.0% | |
| !! | CTTTTACCGCGTGATGATGA+AGG | + | chr1_4:16938488-16938507 | None:intergenic | 45.0% |
| CTTCATCATCACGCGGTAAA+AGG | - | chr1_4:16938486-16938505 | Msa0153540:CDS | 45.0% | |
| !! | GGGTTGGCTTGAATTTGTGA+AGG | - | chr1_4:16939708-16939727 | Msa0153540:intron | 45.0% |
| CACACTTTCATAGACGGTGC+TGG | + | chr1_4:16938521-16938540 | None:intergenic | 50.0% | |
| ! | GTGTTGGTCTATTGCAGGGT+TGG | - | chr1_4:16939692-16939711 | Msa0153540:intron | 50.0% |
| CACACTTTCATAGACGGTGC+TGG | + | chr1_4:16938521-16938540 | None:intergenic | 50.0% | |
| ! | GTGTTGGTCTATTGCAGGGT+TGG | - | chr1_4:16939692-16939711 | Msa0153540:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16938082 | 16939768 | 16938082 | ID=Msa0153540;Name=Msa0153540 |
| chr1_4 | mRNA | 16938082 | 16939768 | 16938082 | ID=Msa0153540-mRNA-1;Parent=Msa0153540;Name=Msa0153540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.83|0.4|0.33|6|0|290 |
| chr1_4 | exon | 16939763 | 16939768 | 16939763 | ID=Msa0153540-mRNA-1:exon:6500;Parent=Msa0153540-mRNA-1 |
| chr1_4 | exon | 16939455 | 16939683 | 16939455 | ID=Msa0153540-mRNA-1:exon:6499;Parent=Msa0153540-mRNA-1 |
| chr1_4 | exon | 16939215 | 16939439 | 16939215 | ID=Msa0153540-mRNA-1:exon:6498;Parent=Msa0153540-mRNA-1 |
| chr1_4 | exon | 16938978 | 16939105 | 16938978 | ID=Msa0153540-mRNA-1:exon:6497;Parent=Msa0153540-mRNA-1 |
| chr1_4 | exon | 16938329 | 16938553 | 16938329 | ID=Msa0153540-mRNA-1:exon:6496;Parent=Msa0153540-mRNA-1 |
| chr1_4 | exon | 16938082 | 16938141 | 16938082 | ID=Msa0153540-mRNA-1:exon:6495;Parent=Msa0153540-mRNA-1 |
| chr1_4 | CDS | 16939763 | 16939768 | 16939763 | ID=Msa0153540-mRNA-1:cds;Parent=Msa0153540-mRNA-1 |
| chr1_4 | CDS | 16939455 | 16939683 | 16939455 | ID=Msa0153540-mRNA-1:cds;Parent=Msa0153540-mRNA-1 |
| chr1_4 | CDS | 16939215 | 16939439 | 16939215 | ID=Msa0153540-mRNA-1:cds;Parent=Msa0153540-mRNA-1 |
| chr1_4 | CDS | 16938978 | 16939105 | 16938978 | ID=Msa0153540-mRNA-1:cds;Parent=Msa0153540-mRNA-1 |
| chr1_4 | CDS | 16938329 | 16938553 | 16938329 | ID=Msa0153540-mRNA-1:cds;Parent=Msa0153540-mRNA-1 |
| chr1_4 | CDS | 16938082 | 16938141 | 16938082 | ID=Msa0153540-mRNA-1:cds;Parent=Msa0153540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
