AlfalfaGEDB | Msa0153550

M. sativa cultivar zhongmu-4 / Msa0153550

KEGG: K10807
GO: GO:0003674 GO:0003824 GO:0004748 GO:0006139 GO:0006259 GO:0006260 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009141 GO:0009142 GO:0009165 GO:0009200 GO:0009202 GO:0009262 GO:0009263 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016725 GO:0016728 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046483 GO:0046686 GO:0050896 GO:0055086 GO:0055114 GO:0061731 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576
PFAM: PF00317.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153550	XP_003630166.2	73.779	389	21	5	48	356	56	443	5.85e-179	551

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153550	sp\|Q9SJ20\|RIR1_ARATH	66.495	388	51	4	48	356	56	443	2.70e-165	508

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153550	G7LC83	73.779	389	21	5	48	356	56	443	2.80e-179	551

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TFs/TRs:

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Gene ID	Type	Classification
Msa0153550	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153550	MtrunA17_Chr8g0383631	73.779	389	21	5	48	356	56	443	0.0	551
Msa0153550	MtrunA17_Chr3g0079701	73.475	377	32	4	48	356	56	432	1.21e-178	540
Msa0153550	MtrunA17_Chr6g0476171	61.404	285	58	6	696	969	2	245	1.70e-106	331
Msa0153550	MtrunA17_Chr6g0476171	71.242	153	40	2	516	665	2	153	9.56e-61	207
Msa0153550	MtrunA17_Chr1g0163141	86.145	166	22	1	350	515	4	168	2.01e-88	281
Msa0153550	MtrunA17_Chr6g0476181	76.250	160	30	1	356	515	1	152	4.73e-75	243
Msa0153550	MtrunA17_Chr1g0163131	42.951	305	129	10	356	646	33	306	2.43e-62	214
Msa0153550	MtrunA17_Chr1g0163131	47.945	73	36	1	893	965	232	302	4.44e-13	71.2
Msa0153550	MtrunA17_Chr1g0163101	61.963	163	40	2	353	515	29	169	1.71e-59	201
Msa0153550	MtrunA17_Chr1g0162161	63.125	160	39	2	356	515	3	142	2.44e-59	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153550	AT2G21790.1	66.495	388	51	4	48	356	56	443	2.75e-166	508
Msa0153550	AT3G18990.1	23.718	312	196	11	357	635	22	324	1.85e-16	82.4
Msa0153550	AT3G18990.2	23.718	312	196	11	357	635	22	324	2.96e-16	82.4
Msa0153550	AT4G33280.1	27.063	303	187	12	356	646	38	318	3.43e-14	75.5

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Find 198 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAACCAGCAGAATCT+GGG	0.535727	1_4:+16950084	Msa0153550:CDS
AAAATCAGAAAGCAGTCCTA+AGG	0.577450	1_4:+16955408	Msa0153550:intron
AAAATTGGAAGAGGTTTGCA+TGG	0.571811	1_4:+16950600	Msa0153550:CDS
AAACTAAAAGATCTCCACAT+CGG	0.700040	1_4:-16950628	None:intergenic
AAAGAGATCAGGCACCAAAA+GGG	0.575886	1_4:-16949836	None:intergenic
AACAATTAGAAGTGTTGGTG+AGG	0.594775	1_4:+16953068	Msa0153550:CDS
AACAATTAGAAGTGTTGGTG+AGG	0.601806	1_4:+16951830	Msa0153550:CDS
AACCACAAAGGAACCAGGCC+CGG	0.503145	1_4:+16953260	Msa0153550:CDS
AACCACGAAGGAACCATGCC+CGG	0.472034	1_4:+16952019	Msa0153550:CDS
AACGGAAATCCTAGCAGCCA+AGG	0.630130	1_4:-16949122	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGGTTTAGTTAAGATAGAAA+TGG	-	chr1_4:16948606-16948625	None:intergenic	30.0%
ATGATAATTCCACAAGTGTT+AGG	-	chr1_4:16948639-16948658	None:intergenic	30.0%
GTGTATCAACTTCAACAAAA+TGG	+	chr1_4:16948880-16948899	Msa0153550:intron	30.0%
ATGTAATCATCCTTATCAAG+AGG	+	chr1_4:16948933-16948952	Msa0153550:intron	30.0%
ACCTCAACATATGATAAAGA+GGG	+	chr1_4:16949357-16949376	Msa0153550:CDS	30.0%
TACTGGTACACTTAAAAATG+TGG	+	chr1_4:16950294-16950313	Msa0153550:intron	30.0%
GTACACTTAAAAATGTGGAT+AGG	+	chr1_4:16950299-16950318	Msa0153550:intron	30.0%
AGTTTAAGGGATATTGGATT+TGG	-	chr1_4:16950521-16950540	None:intergenic	30.0%
TTTGGAAGTTTAAGGGATAT+TGG	-	chr1_4:16950527-16950546	None:intergenic	30.0%
ATATCCCTTAAACTTCCAAA+TGG	+	chr1_4:16950527-16950546	Msa0153550:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	16948443	16955538	16948443	ID=Msa0153550;Name=Msa0153550
chr1_4	mRNA	16948443	16955538	16948443	ID=Msa0153550-mRNA-1;Parent=Msa0153550;Name=Msa0153550-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0\|0\|0\|0.92\|1\|1\|13\|0\|1005
chr1_4	exon	16948443	16948559	16948443	ID=Msa0153550-mRNA-1:exon:6468;Parent=Msa0153550-mRNA-1
chr1_4	exon	16949037	16949634	16949037	ID=Msa0153550-mRNA-1:exon:6469;Parent=Msa0153550-mRNA-1
chr1_4	exon	16949716	16949962	16949716	ID=Msa0153550-mRNA-1:exon:6470;Parent=Msa0153550-mRNA-1
chr1_4	exon	16950068	16950170	16950068	ID=Msa0153550-mRNA-1:exon:6471;Parent=Msa0153550-mRNA-1
chr1_4	exon	16950476	16950956	16950476	ID=Msa0153550-mRNA-1:exon:6472;Parent=Msa0153550-mRNA-1
chr1_4	exon	16951236	16951384	16951236	ID=Msa0153550-mRNA-1:exon:6473;Parent=Msa0153550-mRNA-1
chr1_4	exon	16951774	16952164	16951774	ID=Msa0153550-mRNA-1:exon:6474;Parent=Msa0153550-mRNA-1
chr1_4	exon	16952480	16952628	16952480	ID=Msa0153550-mRNA-1:exon:6475;Parent=Msa0153550-mRNA-1
chr1_4	exon	16953012	16953294	16953012	ID=Msa0153550-mRNA-1:exon:6476;Parent=Msa0153550-mRNA-1
chr1_4	exon	16954673	16954786	16954673	ID=Msa0153550-mRNA-1:exon:6477;Parent=Msa0153550-mRNA-1
chr1_4	exon	16954878	16954912	16954878	ID=Msa0153550-mRNA-1:exon:6478;Parent=Msa0153550-mRNA-1
chr1_4	exon	16955019	16955246	16955019	ID=Msa0153550-mRNA-1:exon:6479;Parent=Msa0153550-mRNA-1
chr1_4	exon	16955416	16955538	16955416	ID=Msa0153550-mRNA-1:exon:6480;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16948443	16948559	16948443	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16949037	16949634	16949037	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16949716	16949962	16949716	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16950068	16950170	16950068	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16950476	16950956	16950476	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16951236	16951384	16951236	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16951774	16952164	16951774	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16952480	16952628	16952480	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16953012	16953294	16953012	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16954673	16954786	16954673	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16954878	16954912	16954878	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16955019	16955246	16955019	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1
chr1_4	CDS	16955416	16955538	16955416	ID=Msa0153550-mRNA-1:cds;Parent=Msa0153550-mRNA-1

Gene Sequence

>Msa0153550

ATGTCGTTTCAACAACAACACGGCACCGGCGGCATTCACAATGGACGTGGGAGTGAAGCTAAGGGAATGCATTTCTATTTAACTGTTCAACAACGCCAGCTTCAAGATGAAGAACTATCGCTCAGAAAATTTGTGCCGGCTCTTGATGAATTAGCCGCTGAAACCGCCGCCTGCATGACCGCTAACCACCCCGATTATGCATCCTTGGCTGCTAGGATTTCCGTTTCAAATCTGCACAAGAACACACTGAAATCTTTTTCTGAAACTGTTAAGGCTCCGTTGTTGATTGCTGATGATGTGTATGAAATTATCATCAAGAATGCGGCTCAATTGGATAGTGAGATAATATATGATAGGGGTTTTGACTACGATTACTTTGTATTCAAAACCCTAGAGAGGTCTTTTCTGTTGAAAGTTGAAGGAGTGGTTGTGGAAAGACCTCAACATATGATAAAGAGGGTTGCTGTTGGAACTCACCAGGATGATGTTGAATCTGCTGTCAATACTTATCATTTCATGTCTCAGAGATGGTTCACTCATGCTTCTCCTACACTTTTCAACGCTGGAACACCTAGGCCTCAGTTGAGTAGTTGCTTCTTAGTGTGCATGAAAGAGGATAGTATTGAGGGGATTTATGATACATTGAAGGAGTGTGCTGTCATTAGTAAATCTGCTGGAGGGATTGGTGTTTCTGTTCACAACATACGTGCCCATGTTGATCAGAAAGGTGCTTTTGCTGTGTACTTGGAGCCATGGCATGCTGATATAGTTGACTTCTTGGAGTTAAAAATAAATCATGGAAAGGAAGAGCAGCGTGCTCGAGATTTATTTTACGCCCTTTTGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGGAAATTGTCCCTGTTCTGCCCCAATGAAGCACCTGGTTTGGCAGATTGTTGGGGTCAAGAATATGATAAGCTGTACACTCAGGATGCTTGCAATAGGAAAATCAACCAGCAGAATCTGGGCACAATTAAGTCATCAAATCTGTGCACTGGGATAATCGAGTATACAAGTCCAACAGAGACTGCTATGATTCCGAGGAATTTTGTAGAGAGGTATTGGAAAAATGTACCAAATCCAATATCCCTTAAACTTCCAAATGGGTCTGCGTGCAAAATGAATTGGGTGCAATGCAGTGATGGTATTTGGCTTCAAAATTGGAAGAGGTTTGCATGGTCGCTCCGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGGTCAGATTTTAATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGAGATGCAACGGCGATCAAGAAAATACTAAAGAGAGTCATGATGATGCTGACGACGACGACAATGATTATGAGTGTGTTGAGATTCCTAGTGACACTGAAAATACTAAAATTCCCCTCAAGAAAAAGAGAATCAATTCAAATGGCATTGCTACTACTGCTGCTACACCTCAAGGGAGTAACATTCACAAGAGAAAAACTAATATCAATGCAACCCAACAAAAAGTTTCAGAGGCTAATGGAAACACAGGAGGCATGGGTAAGAAAGCTAAAAATGCACAAAAACTAAATGAGAGAAGTTACACAAATTCTCATCCCAATGAGAGTCCTAGTTTCACTGTCAAATTATCGCCATGTCATGTTGAAGGTGATAATAGATTGACGATACCTAATTGCTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGGGCATGGCACATGACATTAAACTTTCGTAAAAGCAGGAGCAGTTTTGTAATGAGGGCTGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAGTTATTATTATCCCAACCACGAAGGAACCATGCCCGGAGCAGTTTCAAGGTATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGATATGCAACAGCGTTAAAGAAAATACTAAAGAGTGTGATGATGATTATGATGATGAGATTCCCAAGACTAATGAAAACAGAGGAGGCAGGGATAAGAAATGCACAAAAACTAAAGATGGGAATGAGAGAAACTGCACGAATTCTCATCCCAATGAGAACCCTAGCTTCACTCTCATGTTATTGCCATATCATGTTGAAGGTGATAATAGATTGATGATACCTAAATGGTTTTCAAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGAGGATAGAACATGGCACGTGACGTTAAACTTTGATGAATCCAGAATAAGTTTTCGAATGGGAAGTGGTTGGAAGTCATTTTCACAGGAACATAACTTGCAAGTCGGTGACATGTGTACGTTTGAGATGACTCAACACAAACCACTTTCATTCACGATTGCTATCATCTCAACCACAAAGGAACCAGGCCCGGAGAAGTTTCAAGAAAACCAAGGAGTCCAAGAAAAATCAAAGACAACACCCGTAAAAGATATGGAATATGCGGGCAATTTTGGAGATGGAATTTCAAGGAGCTGCACAAAAACACATGGTTTTAGGGATTCTGTAAGTCTGGATTTACATGAAATGTTCAAGTTGGTTGTACTACCAAGTGAGCTGTTGAAGAAGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAATTATAATGAACATCTCGACTATGGGTGGTTCACTAAAGGCTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGAAAGCAGTCCTAAGGTATGATGCTTCCTCCAATTCTCAAGGTTCATCAAGACATTGCCTTCCTCGATCATCTTTAATCAAAGCTTCTTCAACCACAACATTAACAGTAAGCAACCTAAGATGA

Protein sequence

>Msa0153550

MSFQQQHGTGGIHNGRGSEAKGMHFYLTVQQRQLQDEELSLRKFVPALDELAAETAACMTANHPDYASLAARISVSNLHKNTLKSFSETVKAPLLIADDVYEIIIKNAAQLDSEIIYDRGFDYDYFVFKTLERSFLLKVEGVVVERPQHMIKRVAVGTHQDDVESAVNTYHFMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIEGIYDTLKECAVISKSAGGIGVSVHNIRAHVDQKGAFAVYLEPWHADIVDFLELKINHGKEEQRARDLFYALLVPDLFMERVQSNGKLSLFCPNEAPGLADCWGQEYDKLYTQDACNRKINQQNLGTIKSSNLCTGIIEYTSPTETAMIPRNFVERYWKNVPNPISLKLPNGSACKMNWVQCSDGIWLQNWKRFAWSLRCGDLLVFQYKGGSDFNVIILDDSKLEIDYSSMRCNGDQENTKESHDDADDDDNDYECVEIPSDTENTKIPLKKKRINSNGIATTAATPQGSNIHKRKTNINATQQKVSEANGNTGGMGKKAKNAQKLNERSYTNSHPNESPSFTVKLSPCHVEGDNRLTIPNCFSKEYMNELLQGKATIRSVGEDRAWHMTLNFRKSRSSFVMRAGWKSFSKEHELKVGDVCKFEMTQREPLSFTVIIIPTTKEPCPEQFQGIILDDSKLEIDYSSMICNSVKENTKECDDDYDDEIPKTNENRGGRDKKCTKTKDGNERNCTNSHPNENPSFTLMLLPYHVEGDNRLMIPKWFSKEYMNELLQGKATIRSVGEEDRTWHVTLNFDESRISFRMGSGWKSFSQEHNLQVGDMCTFEMTQHKPLSFTIAIISTTKEPGPEKFQENQGVQEKSKTTPVKDMEYAGNFGDGISRSCTKTHGFRDSVSLDLHEMFKLVVLPSELLKKHGIFSGNSVELRVGEGTWFVEVNYNEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKKAVLRYDASSNSQGSSRHCLPRSSLIKASSTTTLTVSNLR*