Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153560 | sp|Q8L3W1|VRN1_ARATH | 25.705 | 319 | 194 | 10 | 91 | 369 | 21 | 336 | 1.80e-16 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153560 | A0A396JPN4 | 73.832 | 428 | 83 | 4 | 91 | 506 | 20 | 430 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153560 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153560 | MtrunA17_Chr1g0163181 | 73.832 | 428 | 83 | 4 | 91 | 506 | 20 | 430 | 0.0 | 628 |
| Msa0153560 | MtrunA17_Chr1g0163201 | 68.374 | 449 | 77 | 5 | 65 | 506 | 3 | 393 | 0.0 | 565 |
| Msa0153560 | MtrunA17_Chr1g0163151 | 66.135 | 251 | 56 | 1 | 256 | 506 | 1 | 222 | 3.73e-111 | 328 |
| Msa0153560 | MtrunA17_Chr1g0163111 | 67.857 | 252 | 57 | 5 | 256 | 506 | 1 | 229 | 4.33e-109 | 323 |
| Msa0153560 | MtrunA17_Chr1g0163251 | 49.854 | 343 | 121 | 4 | 91 | 416 | 20 | 328 | 2.81e-101 | 310 |
| Msa0153560 | MtrunA17_Chr1g0163251 | 55.738 | 61 | 25 | 1 | 1 | 59 | 243 | 303 | 3.45e-12 | 68.2 |
| Msa0153560 | MtrunA17_Chr1g0163261 | 43.098 | 297 | 132 | 4 | 91 | 378 | 24 | 292 | 1.04e-74 | 238 |
| Msa0153560 | MtrunA17_Chr1g0163231 | 45.704 | 291 | 115 | 7 | 91 | 371 | 24 | 281 | 5.09e-74 | 236 |
| Msa0153560 | MtrunA17_Chr1g0171611 | 45.205 | 292 | 103 | 7 | 91 | 371 | 24 | 269 | 2.04e-70 | 226 |
| Msa0153560 | MtrunA17_Chr1g0163191 | 73.750 | 160 | 22 | 2 | 91 | 250 | 20 | 159 | 6.24e-64 | 205 |
| Msa0153560 | MtrunA17_Chr1g0163241 | 62.112 | 161 | 29 | 2 | 88 | 247 | 19 | 148 | 2.01e-56 | 186 |
| Msa0153560 | MtrunA17_Chr1g0208771 | 27.941 | 476 | 268 | 17 | 82 | 504 | 3 | 456 | 3.78e-39 | 148 |
| Msa0153560 | MtrunA17_Chr6g0476171 | 34.058 | 276 | 143 | 8 | 237 | 505 | 2 | 245 | 1.27e-38 | 141 |
| Msa0153560 | MtrunA17_Chr6g0476171 | 75.510 | 49 | 12 | 0 | 1 | 49 | 98 | 146 | 2.09e-18 | 84.7 |
| Msa0153560 | MtrunA17_Chr1g0162151 | 35.039 | 254 | 112 | 5 | 256 | 504 | 1 | 206 | 8.98e-37 | 135 |
| Msa0153560 | MtrunA17_Chr1g0162151 | 52.941 | 51 | 24 | 0 | 3 | 53 | 84 | 134 | 8.87e-11 | 62.0 |
| Msa0153560 | MtrunA17_Chr8g0390841 | 26.681 | 476 | 274 | 16 | 91 | 504 | 54 | 516 | 4.29e-34 | 134 |
| Msa0153560 | MtrunA17_Chr1g0163131 | 31.338 | 284 | 177 | 9 | 92 | 368 | 34 | 306 | 3.67e-33 | 128 |
| Msa0153560 | MtrunA17_Chr1g0163131 | 38.994 | 159 | 81 | 6 | 360 | 505 | 151 | 306 | 2.67e-20 | 91.7 |
| Msa0153560 | MtrunA17_Chr7g0233561 | 31.270 | 307 | 176 | 10 | 91 | 379 | 33 | 322 | 6.27e-32 | 125 |
| Msa0153560 | MtrunA17_Chr1g0163091 | 41.667 | 132 | 72 | 1 | 256 | 382 | 1 | 132 | 1.14e-30 | 117 |
| Msa0153560 | MtrunA17_Chr7g0233541 | 31.164 | 292 | 174 | 9 | 92 | 369 | 2 | 280 | 1.43e-29 | 117 |
| Msa0153560 | MtrunA17_Chr7g0233521 | 31.469 | 286 | 164 | 9 | 92 | 369 | 2 | 263 | 1.52e-29 | 117 |
| Msa0153560 | MtrunA17_Chr3g0131891 | 30.420 | 286 | 174 | 8 | 92 | 369 | 35 | 303 | 3.03e-29 | 117 |
| Msa0153560 | MtrunA17_Chr7g0233531 | 32.168 | 286 | 162 | 10 | 92 | 369 | 2 | 263 | 9.68e-26 | 106 |
| Msa0153560 | MtrunA17_Chr1g0163101 | 46.729 | 107 | 54 | 2 | 92 | 198 | 33 | 136 | 7.33e-25 | 101 |
| Msa0153560 | MtrunA17_Chr3g0103171 | 26.962 | 293 | 173 | 9 | 87 | 367 | 1 | 264 | 1.51e-24 | 102 |
| Msa0153560 | MtrunA17_Chr1g0162161 | 40.708 | 113 | 64 | 2 | 89 | 201 | 1 | 110 | 1.82e-24 | 99.8 |
| Msa0153560 | MtrunA17_Chr1g0163071 | 24.919 | 309 | 202 | 7 | 92 | 381 | 2 | 299 | 3.83e-24 | 102 |
| Msa0153560 | MtrunA17_Chr1g0163121 | 44.248 | 113 | 60 | 2 | 89 | 201 | 8 | 117 | 1.06e-23 | 97.1 |
| Msa0153560 | MtrunA17_Chr6g0476181 | 40.800 | 125 | 67 | 3 | 92 | 215 | 2 | 120 | 1.45e-22 | 94.4 |
| Msa0153560 | MtrunA17_Chr1g0163081 | 39.823 | 113 | 65 | 2 | 89 | 201 | 3 | 112 | 2.41e-22 | 93.2 |
| Msa0153560 | MtrunA17_Chr3g0103181 | 24.825 | 286 | 186 | 7 | 85 | 367 | 19 | 278 | 7.45e-22 | 95.5 |
| Msa0153560 | MtrunA17_Chr4g0067431 | 26.923 | 286 | 195 | 9 | 91 | 367 | 30 | 310 | 7.35e-21 | 93.6 |
| Msa0153560 | MtrunA17_Chr7g0233571 | 30.653 | 199 | 127 | 5 | 92 | 286 | 26 | 217 | 5.62e-19 | 85.9 |
| Msa0153560 | MtrunA17_Chr1g0163221 | 27.875 | 287 | 172 | 9 | 92 | 367 | 27 | 289 | 2.70e-18 | 86.7 |
| Msa0153560 | MtrunA17_Chr1g0163141 | 40.625 | 96 | 56 | 1 | 92 | 187 | 11 | 105 | 3.57e-18 | 82.4 |
| Msa0153560 | MtrunA17_Chr3g0103191 | 31.056 | 161 | 103 | 4 | 85 | 239 | 19 | 177 | 2.26e-17 | 82.0 |
| Msa0153560 | MtrunA17_Chr1g0163161 | 41.053 | 95 | 53 | 2 | 104 | 198 | 1 | 92 | 3.36e-17 | 78.2 |
| Msa0153560 | MtrunA17_Chr5g0419201 | 34.375 | 128 | 77 | 2 | 92 | 212 | 32 | 159 | 7.86e-17 | 79.0 |
| Msa0153560 | MtrunA17_Chr3g0103151 | 36.792 | 106 | 63 | 2 | 91 | 194 | 25 | 128 | 8.36e-17 | 77.8 |
| Msa0153560 | MtrunA17_Chr1g0154041 | 23.885 | 314 | 188 | 10 | 91 | 357 | 30 | 339 | 1.01e-13 | 73.6 |
| Msa0153560 | MtrunA17_Chr3g0077451 | 23.232 | 297 | 163 | 8 | 81 | 372 | 1 | 237 | 8.39e-13 | 68.2 |
| Msa0153560 | MtrunA17_Chr6g0467351 | 31.858 | 113 | 69 | 3 | 91 | 195 | 30 | 142 | 1.88e-11 | 63.9 |
| Msa0153560 | MtrunA17_Chr5g0419211 | 32.632 | 95 | 63 | 1 | 290 | 383 | 10 | 104 | 8.30e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153560 | AT3G18990.2 | 25.466 | 322 | 197 | 10 | 91 | 372 | 21 | 339 | 1.04e-17 | 85.1 |
| Msa0153560 | AT3G18990.1 | 25.705 | 319 | 194 | 10 | 91 | 369 | 21 | 336 | 1.83e-17 | 84.3 |
Find 112 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAGCTGTTTGTTCTTTA+AGG | 0.043378 | 1_4:-16957357 | Msa0153560:three_prime_UTR |
| TCTTCTCCAACTTGATTATT+TGG | 0.102701 | 1_4:-16957155 | Msa0153560:intron |
| TTTGGAAAGCCTTTCAAATA+TGG | 0.173595 | 1_4:-16959679 | Msa0153560:CDS |
| ATTTATTAAGCAATGTATTT+TGG | 0.183495 | 1_4:-16957285 | Msa0153560:three_prime_UTR |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1_4:+16959814 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_4:-16957557 | Msa0153560:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1_4:+16959573 | None:intergenic |
| CATTAACAGCTTCAGATCTT+AGG | 0.270045 | 1_4:+16958962 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1_4:-16959810 | Msa0153560:CDS |
| TGGAGAGTAACGGTGATATT+TGG | 0.286630 | 1_4:-16959723 | Msa0153560:CDS |
| TTAATGGAACTACAACAATA+AGG | 0.294713 | 1_4:-16958769 | Msa0153560:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1_4:-16957388 | Msa0153560:CDS |
| TTCTCTCATCAATCAACTTA+AGG | 0.303800 | 1_4:+16957416 | None:intergenic |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_4:-16959652 | Msa0153560:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1_4:+16959772 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1_4:+16958599 | None:intergenic |
| AGGCATGGTTCCTTTGTAGC+TGG | 0.320210 | 1_4:+16961130 | None:intergenic |
| AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1_4:+16958551 | None:intergenic |
| TGTGGCTGTAGGTTCGGTAT+AGG | 0.329018 | 1_4:-16957490 | Msa0153560:CDS |
| AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 1_4:+16958360 | None:intergenic |
| CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1_4:+16958557 | None:intergenic |
| CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1_4:+16959388 | None:intergenic |
| AGTTTGACACGATACCTCTT+AGG | 0.343617 | 1_4:+16957230 | None:intergenic |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1_4:+16959773 | None:intergenic |
| TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1_4:+16958803 | None:intergenic |
| TGAAACAGAGGATACCTAAT+TGG | 0.359645 | 1_4:-16961381 | Msa0153560:intron |
| CGACGTTAAATTTCGATGAA+TGG | 0.363870 | 1_4:-16961279 | Msa0153560:five_prime_UTR |
| TAATGGAACTACAACAATAA+GGG | 0.368234 | 1_4:-16958768 | Msa0153560:CDS |
| TGCTTTGCCCTTTCAAAGGC+TGG | 0.369435 | 1_4:-16957310 | Msa0153560:three_prime_UTR |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1_4:+16959450 | None:intergenic |
| CTTAAAGAACAAACAGCTAA+TGG | 0.387343 | 1_4:+16957358 | None:intergenic |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1_4:+16959764 | None:intergenic |
| ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1_4:+16959597 | None:intergenic |
| AATTATTATGAGAGTCTTTG+TGG | 0.411918 | 1_4:-16957508 | Msa0153560:CDS |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1_4:-16958679 | Msa0153560:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1_4:-16957451 | Msa0153560:CDS |
| AGCTACAAAGGAACCATGCC+TGG | 0.433161 | 1_4:-16961128 | Msa0153560:CDS |
| AGAGGTATCGTGTCAAACTT+TGG | 0.435095 | 1_4:-16957226 | Msa0153560:three_prime_UTR |
| GTATTTGATTTGAACCTAAG+AGG | 0.436962 | 1_4:-16957244 | Msa0153560:three_prime_UTR |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_4:+16961157 | None:intergenic |
| CAAAGTGGCCATGGTAAAGA+AGG | 0.440389 | 1_4:-16958995 | Msa0153560:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 1_4:-16957590 | Msa0153560:CDS |
| AGTCTTTGTGGCTGTAGGTT+CGG | 0.443089 | 1_4:-16957496 | Msa0153560:CDS |
| ATAAATATCCAGCCTTTGAA+AGG | 0.449441 | 1_4:+16957302 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_4:-16957556 | Msa0153560:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1_4:-16959382 | Msa0153560:CDS |
| GGCATGGTTCCTTTGTAGCT+GGG | 0.456521 | 1_4:+16961131 | None:intergenic |
| CATTGTGAGCTCATGTGAAA+TGG | 0.459130 | 1_4:-16960437 | Msa0153560:CDS |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_4:-16959649 | Msa0153560:CDS |
| AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1_4:-16958369 | Msa0153560:intron |
| TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1_4:-16958370 | Msa0153560:CDS |
| TAGTTGCTTTGCCCTTTCAA+AGG | 0.488782 | 1_4:-16957314 | Msa0153560:three_prime_UTR |
| TACCAAAGGAGTTTATGAAA+AGG | 0.490605 | 1_4:-16957591 | Msa0153560:CDS |
| AGCCGCTCTGCAAGAGGCTA+AGG | 0.493703 | 1_4:-16961685 | Msa0153560:five_prime_UTR |
| TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1_4:+16958933 | None:intergenic |
| CCATGCCTGGAGCAGTTTCA+AGG | 0.511461 | 1_4:-16961115 | Msa0153560:intron |
| GGGATATCATGAAAATATTG+TGG | 0.516599 | 1_4:-16957569 | Msa0153560:CDS |
| GCTGTAGGTTCGGTATAGGT+TGG | 0.517581 | 1_4:-16957486 | Msa0153560:CDS |
| AAATACCTTGAAACTGCTCC+AGG | 0.519839 | 1_4:+16961110 | None:intergenic |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1_4:+16959670 | None:intergenic |
| TGGTTGGAAGTCGTTTGTGC+AGG | 0.521812 | 1_4:-16961233 | Msa0153560:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1_4:-16959364 | Msa0153560:intron |
| TAAATATCCAGCCTTTGAAA+GGG | 0.525698 | 1_4:+16957303 | None:intergenic |
| GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1_4:+16958934 | None:intergenic |
| AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1_4:-16958389 | Msa0153560:CDS |
| ATGAGAGTCTTTGTGGCTGT+AGG | 0.526299 | 1_4:-16957501 | Msa0153560:CDS |
| GATATCAAGGGATCAAAGAA+AGG | 0.528392 | 1_4:-16960385 | Msa0153560:CDS |
| GTGACTGTTACTGAAGTGTT+AGG | 0.532912 | 1_4:-16961776 | Msa0153560:five_prime_UTR |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1_4:-16957940 | Msa0153560:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_4:-16959571 | Msa0153560:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1_4:-16959460 | Msa0153560:CDS |
| GCAAGAGGCTAAGGCTCTGA+TGG | 0.545145 | 1_4:-16961676 | Msa0153560:five_prime_UTR |
| AAGAGTAGCCGCTCTGCAAG+AGG | 0.547855 | 1_4:-16961691 | Msa0153560:five_prime_UTR |
| CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1_4:-16958557 | Msa0153560:intron |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1_4:-16958625 | Msa0153560:CDS |
| GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1_4:-16958402 | Msa0153560:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1_4:-16958754 | Msa0153560:CDS |
| TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1_4:-16957958 | Msa0153560:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1_4:-16959476 | Msa0153560:CDS |
| TACATGAAAGAGTTGTTGCA+AGG | 0.571480 | 1_4:-16961346 | Msa0153560:five_prime_UTR |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1_4:-16959004 | Msa0153560:CDS |
| CCTTGAAACTGCTCCAGGCA+TGG | 0.579128 | 1_4:+16961115 | None:intergenic |
| ACTTACAAAGAAATAGCCAT+TGG | 0.583056 | 1_4:+16958900 | None:intergenic |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.584375 | 1_4:-16957589 | Msa0153560:CDS |
| AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1_4:-16958691 | Msa0153560:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1_4:-16959550 | Msa0153560:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1_4:-16959769 | Msa0153560:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1_4:-16959419 | Msa0153560:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1_4:-16959821 | Msa0153560:CDS |
| GGAACTACAACAATAAGGGT+TGG | 0.596420 | 1_4:-16958764 | Msa0153560:CDS |
| GTATCTGCAGCGTGTACCAA+AGG | 0.601960 | 1_4:-16957605 | Msa0153560:intron |
| GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1_4:-16958399 | Msa0153560:CDS |
| ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1_4:-16958916 | Msa0153560:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1_4:-16958747 | Msa0153560:CDS |
| TACTATTATCCCAGCTACAA+AGG | 0.605894 | 1_4:-16961140 | Msa0153560:CDS |
| ACATGAAAGAGTTGTTGCAA+GGG | 0.610644 | 1_4:-16961345 | Msa0153560:five_prime_UTR |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_4:-16959805 | Msa0153560:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1_4:-16957458 | Msa0153560:CDS |
| CAGGAACATAACTTGCAAGC+TGG | 0.628096 | 1_4:-16961214 | Msa0153560:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1_4:-16957543 | Msa0153560:CDS |
| TTTCGTGAAGAACATAACCC+CGG | 0.634958 | 1_4:-16957916 | Msa0153560:intron |
| AACGATTAGAAATGTTGATG+AGG | 0.639795 | 1_4:-16961317 | Msa0153560:five_prime_UTR |
| AAAGTGGCCATGGTAAAGAA+GGG | 0.643088 | 1_4:-16958994 | Msa0153560:CDS |
| AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1_4:-16959393 | Msa0153560:CDS |
| GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1_4:-16958733 | Msa0153560:CDS |
| CAAAGAAAGGAAAAGACACA+CGG | 0.662031 | 1_4:-16960372 | Msa0153560:CDS |
| TAGCTTTAAGCATTGCTCAG+AGG | 0.668808 | 1_4:-16961723 | Msa0153560:five_prime_UTR |
| CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1_4:-16959010 | Msa0153560:intron |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_4:-16957555 | Msa0153560:CDS |
| GAAGTGTTAGGACCAGACAA+AGG | 0.713261 | 1_4:-16961764 | Msa0153560:five_prime_UTR |
| AGCCTTAGCCTCTTGCAGAG+CGG | 0.737033 | 1_4:+16961683 | None:intergenic |
| ATGTTGATGAGGACATGACA+TGG | 0.737782 | 1_4:-16961306 | Msa0153560:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAAATATATCTAAATTTT+TGG | - | chr1_4:16960842-16960861 | Msa0153560:intron | 10.0% |
| !!! | TCAAATATATCTAAATTTTT+GGG | - | chr1_4:16960843-16960862 | Msa0153560:intron | 10.0% |
| !! | ATTCATTAATCAAACATATA+AGG | + | chr1_4:16957434-16957453 | None:intergenic | 15.0% |
| !! | AACCAAATACTTATATATTA+TGG | + | chr1_4:16957918-16957937 | None:intergenic | 15.0% |
| !!! | ATTTAATCAATTTTGTTAGT+TGG | - | chr1_4:16958199-16958218 | Msa0153560:intron | 15.0% |
| !!! | ATTTTCTATCTAATTTTTTC+TGG | + | chr1_4:16958676-16958695 | None:intergenic | 15.0% |
| !!! | TAAAGATATTTTTTGTAGTA+TGG | + | chr1_4:16958753-16958772 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATTTTTT+GGG | - | chr1_4:16959121-16959140 | Msa0153560:intron | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1_4:16959159-16959178 | Msa0153560:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1_4:16959160-16959179 | Msa0153560:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_4:16959245-16959264 | Msa0153560:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_4:16959273-16959292 | None:intergenic | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | - | chr1_4:16959610-16959629 | Msa0153560:CDS | 15.0% |
| !!! | ATGTGATTTTTTTTTTTTGT+AGG | - | chr1_4:16959718-16959737 | Msa0153560:CDS | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | - | chr1_4:16960335-16960354 | Msa0153560:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | - | chr1_4:16960545-16960564 | Msa0153560:intron | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | - | chr1_4:16960546-16960565 | Msa0153560:intron | 15.0% |
| !! | AAACTTATGAATGATTTATA+AGG | - | chr1_4:16960636-16960655 | Msa0153560:intron | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | + | chr1_4:16960829-16960848 | None:intergenic | 15.0% |
| !! | ATTGAACGAAAATTAATTAT+GGG | + | chr1_4:16961052-16961071 | None:intergenic | 15.0% |
| !! | AATTGAACGAAAATTAATTA+TGG | + | chr1_4:16961053-16961072 | None:intergenic | 15.0% |
| !!! | ATTTATTAAGCAATGTATTT+TGG | - | chr1_4:16961582-16961601 | Msa0153560:intron | 15.0% |
| !!! | TATTCTTTTGAAATCCAATT+AGG | + | chr1_4:16957503-16957522 | None:intergenic | 20.0% |
| !!! | TCTTTCGTTATTATTGTTTT+TGG | - | chr1_4:16957779-16957798 | Msa0153560:intron | 20.0% |
| !! | CACCATAATATATAAGTATT+TGG | - | chr1_4:16957913-16957932 | Msa0153560:intron | 20.0% |
| !! | ATTATGCATGTATTTATTAC+AGG | - | chr1_4:16957979-16957998 | Msa0153560:intron | 20.0% |
| !! | TTATGCATGTATTTATTACA+GGG | - | chr1_4:16957980-16957999 | Msa0153560:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | - | chr1_4:16958881-16958900 | Msa0153560:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATTTTT+TGG | - | chr1_4:16959120-16959139 | Msa0153560:intron | 20.0% |
| !!! | CAAAAAAATTGGGAAAATTT+TGG | - | chr1_4:16959170-16959189 | Msa0153560:intron | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1_4:16960271-16960290 | None:intergenic | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1_4:16960973-16960992 | None:intergenic | 20.0% |
| !! | AGGTTAAAAGTTAATAGAAT+AGG | + | chr1_4:16961112-16961131 | None:intergenic | 20.0% |
| !! | TTAACCTTTAATGTATAAAG+TGG | - | chr1_4:16961125-16961144 | Msa0153560:CDS | 20.0% |
| !! | ATCTATAAATGTAACCATAA+CGG | + | chr1_4:16961200-16961219 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTGGTTGTTTTA+AGG | - | chr1_4:16961688-16961707 | Msa0153560:five_prime_UTR | 20.0% |
| !! | ATATTTCCAAATAATCAAGT+TGG | + | chr1_4:16961721-16961740 | None:intergenic | 20.0% |
| !!! | TATGTTGTTTTAGTTGAGTT+TGG | - | chr1_4:16957370-16957389 | Msa0153560:exon | 25.0% |
| ! | ACCTTATTACAACATATAAG+CGG | + | chr1_4:16957406-16957425 | None:intergenic | 25.0% |
| ! | TATATGTTGTAATAAGGTTC+AGG | - | chr1_4:16957408-16957427 | Msa0153560:CDS | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | + | chr1_4:16957713-16957732 | None:intergenic | 25.0% |
| ! | TCAATCATATATGTTCATCT+TGG | - | chr1_4:16957884-16957903 | Msa0153560:intron | 25.0% |
| !!! | GGTTTTAGTCATTCTAATAT+TGG | - | chr1_4:16957934-16957953 | Msa0153560:CDS | 25.0% |
| !!! | AGTTTTTTTCCAAGTACTAA+AGG | - | chr1_4:16958087-16958106 | Msa0153560:intron | 25.0% |
| ! | TATATATCACCTTTAGTACT+TGG | + | chr1_4:16958099-16958118 | None:intergenic | 25.0% |
| !! | ACTTTATGATGACATAGTTT+TGG | + | chr1_4:16958249-16958268 | None:intergenic | 25.0% |
| !!! | TTTTTACATAAGGTACTGTA+GGG | + | chr1_4:16958457-16958476 | None:intergenic | 25.0% |
| !!! | ATTTTTACATAAGGTACTGT+AGG | + | chr1_4:16958458-16958477 | None:intergenic | 25.0% |
| ! | TACAGTACCTTATGTAAAAA+TGG | - | chr1_4:16958457-16958476 | Msa0153560:intron | 25.0% |
| !!! | ATATCTGCCATTTTTACATA+AGG | + | chr1_4:16958467-16958486 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCGTGTCATAAA+TGG | - | chr1_4:16958620-16958639 | Msa0153560:CDS | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | + | chr1_4:16959056-16959075 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1_4:16959057-16959076 | Msa0153560:intron | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | + | chr1_4:16959097-16959116 | None:intergenic | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | + | chr1_4:16959098-16959117 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | - | chr1_4:16959098-16959117 | Msa0153560:intron | 25.0% |
| !!! | TGAACAAAAAATTTTTTGGG+TGG | - | chr1_4:16959124-16959143 | Msa0153560:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1_4:16959200-16959219 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_4:16959215-16959234 | Msa0153560:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_4:16959218-16959237 | Msa0153560:intron | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1_4:16959297-16959316 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1_4:16959296-16959315 | Msa0153560:intron | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | - | chr1_4:16959839-16959858 | Msa0153560:intron | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | + | chr1_4:16959936-16959955 | None:intergenic | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | + | chr1_4:16959937-16959956 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1_4:16960082-16960101 | Msa0153560:intron | 25.0% |
| ! | TTAATGGAACTACAACAATA+AGG | - | chr1_4:16960098-16960117 | Msa0153560:intron | 25.0% |
| ! | TAATGGAACTACAACAATAA+GGG | - | chr1_4:16960099-16960118 | Msa0153560:intron | 25.0% |
| ! | TACCCAGAAAAAATATTGTA+TGG | - | chr1_4:16960165-16960184 | Msa0153560:intron | 25.0% |
| ! | ACCCAGAAAAAATATTGTAT+GGG | - | chr1_4:16960166-16960185 | Msa0153560:intron | 25.0% |
| !!! | ACCCATACAATATTTTTTCT+GGG | + | chr1_4:16960170-16960189 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | - | chr1_4:16960411-16960430 | Msa0153560:CDS | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | - | chr1_4:16960424-16960443 | Msa0153560:CDS | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | - | chr1_4:16960425-16960444 | Msa0153560:CDS | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | - | chr1_4:16960643-16960662 | Msa0153560:intron | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | + | chr1_4:16960798-16960817 | None:intergenic | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1_4:16960972-16960991 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_4:16961310-16961329 | Msa0153560:five_prime_UTR | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_4:16961311-16961330 | Msa0153560:five_prime_UTR | 25.0% |
| ! | AATTATTATGAGAGTCTTTG+TGG | - | chr1_4:16961359-16961378 | Msa0153560:five_prime_UTR | 25.0% |
| !! | GATTTTTGTTCTATGATTGT+TGG | - | chr1_4:16961663-16961682 | Msa0153560:intron | 25.0% |
| !!! | GATTGTTGGTAATGTTTTTT+TGG | - | chr1_4:16961677-16961696 | Msa0153560:five_prime_UTR | 25.0% |
| ! | TTCTGAATTTTTCCTTTGTC+TGG | + | chr1_4:16957118-16957137 | None:intergenic | 30.0% |
| CATGACAGTCAAACATATTT+GGG | + | chr1_4:16957275-16957294 | None:intergenic | 30.0% | |
| TCATGACAGTCAAACATATT+TGG | + | chr1_4:16957276-16957295 | None:intergenic | 30.0% | |
| AACGATTAGAAATGTTGATG+AGG | - | chr1_4:16957550-16957569 | Msa0153560:CDS | 30.0% | |
| !!! | TTTGGCTCAAATCACTTTTT+AGG | + | chr1_4:16958231-16958250 | None:intergenic | 30.0% |
| GAATGAAACATTCAATGACT+TGG | - | chr1_4:16958306-16958325 | Msa0153560:intron | 30.0% | |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1_4:16958390-16958409 | None:intergenic | 30.0% |
| TGTAAAAATGGCAGATATCA+AGG | - | chr1_4:16958469-16958488 | Msa0153560:intron | 30.0% | |
| GTAAAAATGGCAGATATCAA+GGG | - | chr1_4:16958470-16958489 | Msa0153560:intron | 30.0% | |
| GCATACATTCAAAAACACAT+TGG | + | chr1_4:16958534-16958553 | None:intergenic | 30.0% | |
| !!! | TTTTTCTGGTGTTACTACTT+TGG | + | chr1_4:16958662-16958681 | None:intergenic | 30.0% |
| AAGATGATCCTATGAAAATC+TGG | + | chr1_4:16958892-16958911 | None:intergenic | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | - | chr1_4:16959027-16959046 | Msa0153560:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | - | chr1_4:16959028-16959047 | Msa0153560:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_4:16959062-16959081 | Msa0153560:intron | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | + | chr1_4:16959116-16959135 | None:intergenic | 30.0% |
| TTTGGAAAGCCTTTCAAATA+TGG | - | chr1_4:16959188-16959207 | Msa0153560:intron | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_4:16959232-16959251 | Msa0153560:intron | 30.0% |
| AAATACCAAAGCAAACTCAA+AGG | - | chr1_4:16959474-16959493 | Msa0153560:CDS | 30.0% | |
| !!! | AGGTGAGTTTGATCTTTTTT+GGG | - | chr1_4:16959523-16959542 | Msa0153560:CDS | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | - | chr1_4:16959533-16959552 | Msa0153560:CDS | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | - | chr1_4:16959618-16959637 | Msa0153560:CDS | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | - | chr1_4:16959636-16959655 | Msa0153560:CDS | 30.0% |
| ACTTACAAAGAAATAGCCAT+TGG | + | chr1_4:16959970-16959989 | None:intergenic | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | - | chr1_4:16960038-16960057 | Msa0153560:intron | 30.0% | |
| TGTTCTCTTGAAAACTCATT+TGG | + | chr1_4:16960067-16960086 | None:intergenic | 30.0% | |
| !!! | CACCCATACAATATTTTTTC+TGG | + | chr1_4:16960171-16960190 | None:intergenic | 30.0% |
| CAGAAAAAATATTGTATGGG+TGG | - | chr1_4:16960169-16960188 | Msa0153560:intron | 30.0% | |
| AAAAAATATTGTATGGGTGG+TGG | - | chr1_4:16960172-16960191 | Msa0153560:intron | 30.0% | |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1_4:16960242-16960261 | Msa0153560:intron | 30.0% |
| AGAAAACCTAGTGATTTCTT+TGG | + | chr1_4:16960319-16960338 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | + | chr1_4:16960426-16960445 | None:intergenic | 30.0% |
| CCATGACAAGGTTATAAAAA+AGG | - | chr1_4:16960423-16960442 | Msa0153560:CDS | 30.0% | |
| AACTGAAAACTGGATAAGTT+AGG | + | chr1_4:16960788-16960807 | None:intergenic | 30.0% | |
| TGTGTTTATGAATGTACAGA+AGG | - | chr1_4:16960895-16960914 | Msa0153560:intron | 30.0% | |
| TTATGTAATTAATCCTACCG+GGG | + | chr1_4:16960971-16960990 | None:intergenic | 30.0% | |
| ATAGGACTAACTTTGACTAA+CGG | + | chr1_4:16961094-16961113 | None:intergenic | 30.0% | |
| GTGTCCACTTTATACATTAA+AGG | + | chr1_4:16961132-16961151 | None:intergenic | 30.0% | |
| ACTGAACAAACAAATTAGTG+AGG | + | chr1_4:16961172-16961191 | None:intergenic | 30.0% | |
| TTGTTCAGTATTAACCGTTA+TGG | - | chr1_4:16961183-16961202 | Msa0153560:CDS | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | - | chr1_4:16961276-16961295 | Msa0153560:five_prime_UTR | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | - | chr1_4:16961277-16961296 | Msa0153560:five_prime_UTR | 30.0% | |
| GGGATATCATGAAAATATTG+TGG | - | chr1_4:16961298-16961317 | Msa0153560:five_prime_UTR | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_4:16961312-16961331 | Msa0153560:five_prime_UTR | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | - | chr1_4:16961409-16961428 | Msa0153560:intron | 30.0% | |
| TTCTCTCATCAATCAACTTA+AGG | + | chr1_4:16961454-16961473 | None:intergenic | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | - | chr1_4:16961479-16961498 | Msa0153560:intron | 30.0% | |
| CTTAAAGAACAAACAGCTAA+TGG | + | chr1_4:16961512-16961531 | None:intergenic | 30.0% | |
| CATTAGCTGTTTGTTCTTTA+AGG | - | chr1_4:16961510-16961529 | Msa0153560:intron | 30.0% | |
| ! | TAAATATCCAGCCTTTGAAA+GGG | + | chr1_4:16961567-16961586 | None:intergenic | 30.0% |
| ATAAATATCCAGCCTTTGAA+AGG | + | chr1_4:16961568-16961587 | None:intergenic | 30.0% | |
| !! | GTATTTGATTTGAACCTAAG+AGG | - | chr1_4:16961623-16961642 | Msa0153560:intron | 30.0% |
| TCTTCTCCAACTTGATTATT+TGG | - | chr1_4:16961712-16961731 | Msa0153560:five_prime_UTR | 30.0% | |
| ATCCAAACTCGTTCCAAAAA+GGG | - | chr1_4:16957233-16957252 | Msa0153560:three_prime_UTR | 35.0% | |
| !! | GCTTTTGATTACACCCTTTT+TGG | + | chr1_4:16957249-16957268 | None:intergenic | 35.0% |
| ATGCAAAGAAGCAAATCAAC+TGG | + | chr1_4:16957349-16957368 | None:intergenic | 35.0% | |
| GCCGCTTATATGTTGTAATA+AGG | - | chr1_4:16957402-16957421 | Msa0153560:CDS | 35.0% | |
| ! | TAAACCATGATCTGAAACAG+AGG | - | chr1_4:16957474-16957493 | Msa0153560:CDS | 35.0% |
| TGAAACAGAGGATACCTAAT+TGG | - | chr1_4:16957486-16957505 | Msa0153560:CDS | 35.0% | |
| TACATGAAAGAGTTGTTGCA+AGG | - | chr1_4:16957521-16957540 | Msa0153560:CDS | 35.0% | |
| ACATGAAAGAGTTGTTGCAA+GGG | - | chr1_4:16957522-16957541 | Msa0153560:CDS | 35.0% | |
| CGACGTTAAATTTCGATGAA+TGG | - | chr1_4:16957588-16957607 | Msa0153560:CDS | 35.0% | |
| TACTATTATCCCAGCTACAA+AGG | - | chr1_4:16957727-16957746 | Msa0153560:intron | 35.0% | |
| GTGATGATACACACACAAAT+AGG | - | chr1_4:16958353-16958372 | Msa0153560:intron | 35.0% | |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1_4:16958376-16958395 | Msa0153560:CDS | 35.0% |
| GATATCAAGGGATCAAAGAA+AGG | - | chr1_4:16958482-16958501 | Msa0153560:intron | 35.0% | |
| CAAAGAAAGGAAAAGACACA+CGG | - | chr1_4:16958495-16958514 | Msa0153560:intron | 35.0% | |
| ACTTTATTACTGTCCAGTAC+AGG | + | chr1_4:16958718-16958737 | None:intergenic | 35.0% | |
| ACTGGACAGTAATAAAGTCT+TGG | - | chr1_4:16958720-16958739 | Msa0153560:CDS | 35.0% | |
| !! | GCTGAAAGATTTTGAGTGTT+AGG | + | chr1_4:16958809-16958828 | None:intergenic | 35.0% |
| !!! | ATTTTTTGGGTGGAGAGTAA+CGG | - | chr1_4:16959134-16959153 | Msa0153560:intron | 35.0% |
| AAGTGATGAATCAAGTGATG+AGG | - | chr1_4:16959391-16959410 | Msa0153560:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | + | chr1_4:16959420-16959439 | None:intergenic | 35.0% | |
| !! | GAATTTTCTCTTGCCATTTC+TGG | + | chr1_4:16959501-16959520 | None:intergenic | 35.0% |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_4:16959503-16959522 | Msa0153560:CDS | 35.0% | |
| !!! | CAGGTGAGTTTGATCTTTTT+TGG | - | chr1_4:16959522-16959541 | Msa0153560:CDS | 35.0% |
| ! | TTTTCTACCCTTCTTTACCA+TGG | + | chr1_4:16959883-16959902 | None:intergenic | 35.0% |
| CATTAACAGCTTCAGATCTT+AGG | + | chr1_4:16959908-16959927 | None:intergenic | 35.0% | |
| ! | GTATCCACTGTTTCAAGTAA+TGG | + | chr1_4:16960045-16960064 | None:intergenic | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_4:16960113-16960132 | Msa0153560:intron | 35.0% |
| TATAAAAAAGGGGTCTCTTG+TGG | - | chr1_4:16960435-16960454 | Msa0153560:CDS | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | - | chr1_4:16960465-16960484 | Msa0153560:intron | 35.0% | |
| !! | CAATACCCTTTACTTTTGGA+TGG | + | chr1_4:16960506-16960525 | None:intergenic | 35.0% |
| ! | AGAGCAATACCCTTTACTTT+TGG | + | chr1_4:16960510-16960529 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+GGG | - | chr1_4:16961278-16961297 | Msa0153560:five_prime_UTR | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1_4:16961416-16961435 | Msa0153560:intron | 35.0% | |
| !! | TAGCTTTAAGCATTGCTCAG+AGG | - | chr1_4:16957144-16957163 | Msa0153560:three_prime_UTR | 40.0% |
| CATCCAAACTCGTTCCAAAA+AGG | - | chr1_4:16957232-16957251 | Msa0153560:three_prime_UTR | 40.0% | |
| GTATCCTCTGTTTCAGATCA+TGG | + | chr1_4:16957481-16957500 | None:intergenic | 40.0% | |
| ! | ATGTTGATGAGGACATGACA+TGG | - | chr1_4:16957561-16957580 | Msa0153560:CDS | 40.0% |
| !! | TGAAATTTTGCTATGCGAGC+TGG | - | chr1_4:16957614-16957633 | Msa0153560:intron | 40.0% |
| AAATACCTTGAAACTGCTCC+AGG | + | chr1_4:16957760-16957779 | None:intergenic | 40.0% | |
| !! | CAAGCACTGAAACAGAACAA+TGG | - | chr1_4:16958029-16958048 | Msa0153560:intron | 40.0% |
| CATTGTGAGCTCATGTGAAA+TGG | - | chr1_4:16958430-16958449 | Msa0153560:CDS | 40.0% | |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1_4:16958656-16958675 | None:intergenic | 40.0% |
| TTTCTCTACATGACCTGTAC+TGG | - | chr1_4:16958702-16958721 | Msa0153560:CDS | 40.0% | |
| !! | AGTGAGTGAGTATTGAGCTA+AGG | + | chr1_4:16958845-16958864 | None:intergenic | 40.0% |
| GAGGGTTCCAAAGAAATATG+TGG | - | chr1_4:16959046-16959065 | Msa0153560:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | + | chr1_4:16959106-16959125 | None:intergenic | 40.0% | |
| TGGAGAGTAACGGTGATATT+TGG | - | chr1_4:16959144-16959163 | Msa0153560:intron | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | - | chr1_4:16959448-16959467 | Msa0153560:CDS | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | - | chr1_4:16959485-16959504 | Msa0153560:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | - | chr1_4:16959843-16959862 | Msa0153560:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | + | chr1_4:16959854-16959873 | None:intergenic | 40.0% | |
| AAAGTGGCCATGGTAAAGAA+GGG | - | chr1_4:16959873-16959892 | Msa0153560:intron | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | - | chr1_4:16959951-16959970 | Msa0153560:intron | 40.0% | |
| GGAACTACAACAATAAGGGT+TGG | - | chr1_4:16960103-16960122 | Msa0153560:intron | 40.0% | |
| !! | AATATTGTATGGGTGGTGGA+TGG | - | chr1_4:16960176-16960195 | Msa0153560:intron | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | - | chr1_4:16960188-16960207 | Msa0153560:intron | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | + | chr1_4:16960302-16960321 | None:intergenic | 40.0% |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | + | chr1_4:16960313-16960332 | None:intergenic | 40.0% |
| CCAAAGCCAAAGAAATCACT+AGG | - | chr1_4:16960310-16960329 | Msa0153560:intron | 40.0% | |
| GTAAAGAAGCAAGACATTGG+AGG | - | chr1_4:16960468-16960487 | Msa0153560:intron | 40.0% | |
| AAGACATTGGAGGAACATCT+AGG | - | chr1_4:16960478-16960497 | Msa0153560:intron | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | - | chr1_4:16960497-16960516 | Msa0153560:intron | 40.0% | |
| AGGAGCCATCCAAAAGTAAA+GGG | - | chr1_4:16960498-16960517 | Msa0153560:intron | 40.0% | |
| TTTCGTGAAGAACATAACCC+CGG | - | chr1_4:16960951-16960970 | Msa0153560:intron | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | + | chr1_4:16961281-16961300 | None:intergenic | 40.0% |
| TGAAAATGGGGAGAAAGTCA+TGG | - | chr1_4:16961324-16961343 | Msa0153560:five_prime_UTR | 40.0% | |
| ! | TAGTTGCTTTGCCCTTTCAA+AGG | - | chr1_4:16961553-16961572 | Msa0153560:intron | 40.0% |
| AGTTTGACACGATACCTCTT+AGG | + | chr1_4:16961640-16961659 | None:intergenic | 40.0% | |
| !! | AGAGGTATCGTGTCAAACTT+TGG | - | chr1_4:16961641-16961660 | Msa0153560:intron | 40.0% |
| ! | GAAGTGTTAGGACCAGACAA+AGG | - | chr1_4:16957103-16957122 | Msa0153560:three_prime_UTR | 45.0% |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | + | chr1_4:16957238-16957257 | None:intergenic | 45.0% |
| !! | ATTTTGCTATGCGAGCTGGT+TGG | - | chr1_4:16957618-16957637 | Msa0153560:intron | 45.0% |
| ! | CAGGAACATAACTTGCAAGC+TGG | - | chr1_4:16957653-16957672 | Msa0153560:intron | 45.0% |
| TGTATGCAGTGTGAGACTGT+TGG | - | chr1_4:16958547-16958566 | Msa0153560:intron | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | - | chr1_4:16959407-16959426 | Msa0153560:CDS | 45.0% | |
| ! | CTGGTCCTTTGAGTTTGCTT+TGG | + | chr1_4:16959482-16959501 | None:intergenic | 45.0% |
| CTTGGCAGGTAGTAACAAAG+TGG | - | chr1_4:16959857-16959876 | Msa0153560:intron | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1_4:16959863-16959882 | Msa0153560:intron | 45.0% | |
| CAAAGTGGCCATGGTAAAGA+AGG | - | chr1_4:16959872-16959891 | Msa0153560:intron | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_4:16960120-16960139 | Msa0153560:intron | 45.0% |
| TACAGAAGGTCGTGATGTGA+AGG | - | chr1_4:16960909-16960928 | Msa0153560:intron | 45.0% | |
| ! | GAAGGAGCACAAGACATTCA+AGG | - | chr1_4:16960927-16960946 | Msa0153560:intron | 45.0% |
| ATGAGAGTCTTTGTGGCTGT+AGG | - | chr1_4:16961366-16961385 | Msa0153560:five_prime_UTR | 45.0% | |
| AGTCTTTGTGGCTGTAGGTT+CGG | - | chr1_4:16961371-16961390 | Msa0153560:five_prime_UTR | 45.0% | |
| !! | AAAAAAAATAAATACTTAAT+TGG | - | chr1_4:16959770-16959789 | Msa0153560:CDS | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | - | chr1_4:16960608-16960627 | Msa0153560:intron | 5.0% |
| TGGTTGGAAGTCGTTTGTGC+AGG | - | chr1_4:16957634-16957653 | Msa0153560:intron | 50.0% | |
| GGCATGGTTCCTTTGTAGCT+GGG | + | chr1_4:16957739-16957758 | None:intergenic | 50.0% | |
| AGGCATGGTTCCTTTGTAGC+TGG | + | chr1_4:16957740-16957759 | None:intergenic | 50.0% | |
| AGCTACAAAGGAACCATGCC+TGG | - | chr1_4:16957739-16957758 | Msa0153560:intron | 50.0% | |
| ! | GGTGCTGAAGACACAGAAGA+AGG | - | chr1_4:16959317-16959336 | Msa0153560:intron | 50.0% |
| GTGAAGAACATAACCCCGGT+AGG | - | chr1_4:16960955-16960974 | Msa0153560:intron | 50.0% | |
| GTATCTGCAGCGTGTACCAA+AGG | - | chr1_4:16961262-16961281 | Msa0153560:exon | 50.0% | |
| ! | TGTGGCTGTAGGTTCGGTAT+AGG | - | chr1_4:16961377-16961396 | Msa0153560:intron | 50.0% |
| ! | GCTGTAGGTTCGGTATAGGT+TGG | - | chr1_4:16961381-16961400 | Msa0153560:intron | 50.0% |
| TGCTTTGCCCTTTCAAAGGC+TGG | - | chr1_4:16961557-16961576 | Msa0153560:intron | 50.0% | |
| AAGAGTAGCCGCTCTGCAAG+AGG | - | chr1_4:16957176-16957195 | Msa0153560:intron | 55.0% | |
| AGCCTTAGCCTCTTGCAGAG+CGG | + | chr1_4:16957187-16957206 | None:intergenic | 55.0% | |
| ! | GCAAGAGGCTAAGGCTCTGA+TGG | - | chr1_4:16957191-16957210 | Msa0153560:intron | 55.0% |
| CCTTGAAACTGCTCCAGGCA+TGG | + | chr1_4:16957755-16957774 | None:intergenic | 55.0% | |
| CCATGCCTGGAGCAGTTTCA+AGG | - | chr1_4:16957752-16957771 | Msa0153560:intron | 55.0% | |
| GGAGTGTGGAAGTGAGTGTG+AGG | - | chr1_4:16960134-16960153 | Msa0153560:intron | 55.0% | |
| AGCCGCTCTGCAAGAGGCTA+AGG | - | chr1_4:16957182-16957201 | Msa0153560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16957094 | 16961795 | 16957094 | ID=Msa0153560;Name=Msa0153560 |
| chr1_4 | mRNA | 16957094 | 16961795 | 16957094 | ID=Msa0153560-mRNA-1;Parent=Msa0153560;Name=Msa0153560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=263|0.55|0.7|0.9|0.77|0.6|10|257|506 |
| chr1_4 | exon | 16957094 | 16957166 | 16957094 | ID=Msa0153560-mRNA-1:exon:6494;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16957200 | 16957617 | 16957200 | ID=Msa0153560-mRNA-1:exon:6493;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16957917 | 16957975 | 16957917 | ID=Msa0153560-mRNA-1:exon:6492;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16958370 | 16958456 | 16958370 | ID=Msa0153560-mRNA-1:exon:6491;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16958558 | 16958831 | 16958558 | ID=Msa0153560-mRNA-1:exon:6490;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16958906 | 16959024 | 16958906 | ID=Msa0153560-mRNA-1:exon:6489;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16959365 | 16959842 | 16959365 | ID=Msa0153560-mRNA-1:exon:6488;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16960342 | 16960463 | 16960342 | ID=Msa0153560-mRNA-1:exon:6487;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16961116 | 16961395 | 16961116 | ID=Msa0153560-mRNA-1:exon:6486;Parent=Msa0153560-mRNA-1 |
| chr1_4 | exon | 16961665 | 16961795 | 16961665 | ID=Msa0153560-mRNA-1:exon:6485;Parent=Msa0153560-mRNA-1 |
| chr1_4 | five_prime_UTR | 16961665 | 16961795 | 16961665 | ID=Msa0153560-mRNA-1:five_prime_utr;Parent=Msa0153560-mRNA-1 |
| chr1_4 | five_prime_UTR | 16961264 | 16961395 | 16961264 | ID=Msa0153560-mRNA-1:five_prime_utr;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16961116 | 16961263 | 16961116 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16960342 | 16960463 | 16960342 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16959365 | 16959842 | 16959365 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16958906 | 16959024 | 16958906 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16958558 | 16958831 | 16958558 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16958370 | 16958456 | 16958370 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16957917 | 16957975 | 16957917 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | CDS | 16957384 | 16957617 | 16957384 | ID=Msa0153560-mRNA-1:cds;Parent=Msa0153560-mRNA-1 |
| chr1_4 | three_prime_UTR | 16957200 | 16957383 | 16957200 | ID=Msa0153560-mRNA-1:three_prime_utr;Parent=Msa0153560-mRNA-1 |
| chr1_4 | three_prime_UTR | 16957094 | 16957166 | 16957094 | ID=Msa0153560-mRNA-1:three_prime_utr;Parent=Msa0153560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
