Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153570 | XP_024630388.1 | 85.677 | 384 | 50 | 1 | 1 | 379 | 1 | 384 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153570 | sp|Q8L3W1|VRN1_ARATH | 26.190 | 336 | 176 | 10 | 7 | 273 | 4 | 336 | 5.83e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153570 | A0A072VFJ7 | 81.864 | 397 | 58 | 3 | 1 | 383 | 1 | 397 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153570 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153570 | MtrunA17_Chr1g0163181 | 71.759 | 432 | 73 | 5 | 1 | 383 | 1 | 432 | 0.0 | 602 |
| Msa0153570 | MtrunA17_Chr1g0163201 | 81.217 | 378 | 57 | 3 | 20 | 383 | 18 | 395 | 0.0 | 601 |
| Msa0153570 | MtrunA17_Chr1g0163151 | 74.324 | 222 | 57 | 0 | 160 | 381 | 1 | 222 | 3.57e-118 | 342 |
| Msa0153570 | MtrunA17_Chr1g0163251 | 52.802 | 339 | 131 | 4 | 1 | 319 | 1 | 330 | 1.18e-114 | 339 |
| Msa0153570 | MtrunA17_Chr1g0163111 | 68.354 | 237 | 58 | 3 | 160 | 384 | 1 | 232 | 1.23e-106 | 313 |
| Msa0153570 | MtrunA17_Chr1g0163191 | 81.132 | 159 | 25 | 1 | 1 | 154 | 1 | 159 | 1.08e-79 | 241 |
| Msa0153570 | MtrunA17_Chr1g0163261 | 44.108 | 297 | 150 | 3 | 1 | 284 | 1 | 294 | 3.13e-79 | 246 |
| Msa0153570 | MtrunA17_Chr1g0163231 | 46.181 | 288 | 133 | 7 | 1 | 274 | 1 | 280 | 4.03e-77 | 240 |
| Msa0153570 | MtrunA17_Chr1g0171611 | 46.367 | 289 | 119 | 8 | 1 | 274 | 1 | 268 | 8.04e-74 | 231 |
| Msa0153570 | MtrunA17_Chr1g0163241 | 66.447 | 152 | 40 | 4 | 1 | 151 | 7 | 148 | 9.18e-59 | 188 |
| Msa0153570 | MtrunA17_Chr6g0476171 | 39.631 | 217 | 126 | 4 | 169 | 380 | 29 | 245 | 2.04e-40 | 143 |
| Msa0153570 | MtrunA17_Chr3g0131891 | 34.043 | 282 | 158 | 9 | 14 | 273 | 28 | 303 | 8.86e-36 | 133 |
| Msa0153570 | MtrunA17_Chr1g0162151 | 39.286 | 224 | 112 | 6 | 160 | 378 | 1 | 205 | 2.23e-35 | 129 |
| Msa0153570 | MtrunA17_Chr7g0233561 | 33.113 | 302 | 158 | 10 | 9 | 273 | 18 | 312 | 1.21e-34 | 130 |
| Msa0153570 | MtrunA17_Chr1g0163131 | 33.566 | 286 | 151 | 10 | 14 | 269 | 27 | 303 | 6.73e-33 | 125 |
| Msa0153570 | MtrunA17_Chr1g0163131 | 40.741 | 135 | 67 | 4 | 255 | 382 | 180 | 308 | 1.60e-18 | 85.5 |
| Msa0153570 | MtrunA17_Chr7g0233521 | 33.955 | 268 | 156 | 8 | 21 | 273 | 2 | 263 | 1.98e-32 | 123 |
| Msa0153570 | MtrunA17_Chr7g0233541 | 33.681 | 288 | 147 | 10 | 21 | 273 | 2 | 280 | 2.07e-32 | 123 |
| Msa0153570 | MtrunA17_Chr8g0390841 | 29.545 | 308 | 168 | 10 | 14 | 284 | 48 | 343 | 4.80e-32 | 126 |
| Msa0153570 | MtrunA17_Chr1g0208771 | 30.000 | 310 | 164 | 10 | 20 | 290 | 12 | 307 | 2.72e-31 | 124 |
| Msa0153570 | MtrunA17_Chr1g0163101 | 43.056 | 144 | 69 | 3 | 14 | 153 | 26 | 160 | 1.73e-30 | 115 |
| Msa0153570 | MtrunA17_Chr1g0163091 | 44.615 | 130 | 67 | 1 | 160 | 284 | 1 | 130 | 3.78e-29 | 111 |
| Msa0153570 | MtrunA17_Chr7g0233531 | 35.556 | 270 | 149 | 9 | 21 | 273 | 2 | 263 | 4.46e-28 | 111 |
| Msa0153570 | MtrunA17_Chr3g0103171 | 28.889 | 270 | 164 | 8 | 20 | 271 | 5 | 264 | 3.69e-26 | 105 |
| Msa0153570 | MtrunA17_Chr1g0163121 | 46.364 | 110 | 56 | 2 | 19 | 126 | 9 | 117 | 2.16e-25 | 100 |
| Msa0153570 | MtrunA17_Chr1g0162161 | 36.429 | 140 | 72 | 3 | 21 | 153 | 4 | 133 | 3.22e-25 | 100 |
| Msa0153570 | MtrunA17_Chr1g0163221 | 27.461 | 386 | 211 | 16 | 14 | 379 | 20 | 356 | 1.68e-24 | 103 |
| Msa0153570 | MtrunA17_Chr3g0103181 | 25.818 | 275 | 180 | 7 | 9 | 269 | 12 | 276 | 1.69e-23 | 99.0 |
| Msa0153570 | MtrunA17_Chr1g0163071 | 24.315 | 292 | 176 | 5 | 21 | 273 | 2 | 287 | 2.04e-23 | 99.4 |
| Msa0153570 | MtrunA17_Chr1g0163081 | 41.964 | 112 | 62 | 2 | 21 | 130 | 6 | 116 | 7.93e-23 | 93.6 |
| Msa0153570 | MtrunA17_Chr6g0476181 | 39.683 | 126 | 61 | 3 | 21 | 146 | 2 | 112 | 3.63e-22 | 92.0 |
| Msa0153570 | MtrunA17_Chr4g0067431 | 27.083 | 288 | 168 | 8 | 9 | 259 | 15 | 297 | 9.33e-22 | 94.7 |
| Msa0153570 | MtrunA17_Chr1g0163141 | 37.500 | 144 | 81 | 4 | 17 | 159 | 7 | 142 | 6.11e-21 | 89.4 |
| Msa0153570 | MtrunA17_Chr7g0233571 | 32.000 | 200 | 112 | 5 | 14 | 190 | 19 | 217 | 6.25e-21 | 90.5 |
| Msa0153570 | MtrunA17_Chr5g0419201 | 37.984 | 129 | 75 | 3 | 14 | 138 | 25 | 152 | 3.78e-20 | 87.4 |
| Msa0153570 | MtrunA17_Chr3g0103191 | 26.238 | 202 | 137 | 6 | 9 | 199 | 12 | 212 | 1.09e-19 | 87.8 |
| Msa0153570 | MtrunA17_Chr3g0103151 | 30.822 | 146 | 97 | 2 | 9 | 150 | 12 | 157 | 1.19e-19 | 85.1 |
| Msa0153570 | MtrunA17_Chr1g0163161 | 38.182 | 110 | 59 | 2 | 33 | 142 | 1 | 101 | 5.20e-18 | 79.7 |
| Msa0153570 | MtrunA17_Chr6g0467351 | 33.333 | 120 | 77 | 2 | 13 | 129 | 23 | 142 | 8.05e-16 | 76.3 |
| Msa0153570 | MtrunA17_Chr4g0033961 | 31.361 | 169 | 100 | 4 | 7 | 165 | 4 | 166 | 3.97e-14 | 73.6 |
| Msa0153570 | MtrunA17_Chr1g0162441 | 33.333 | 111 | 67 | 3 | 7 | 110 | 5 | 115 | 9.58e-12 | 66.2 |
| Msa0153570 | MtrunA17_Chr3g0077461 | 24.803 | 254 | 144 | 9 | 14 | 262 | 246 | 457 | 9.93e-12 | 66.2 |
| Msa0153570 | MtrunA17_Chr3g0077411 | 23.881 | 268 | 157 | 10 | 14 | 264 | 271 | 508 | 3.22e-11 | 64.7 |
| Msa0153570 | MtrunA17_Chr1g0163061 | 35.870 | 92 | 56 | 2 | 14 | 102 | 24 | 115 | 5.52e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153570 | AT3G18990.2 | 25.959 | 339 | 179 | 10 | 7 | 276 | 4 | 339 | 4.85e-21 | 94.0 |
| Msa0153570 | AT3G18990.1 | 26.190 | 336 | 176 | 10 | 7 | 273 | 4 | 336 | 5.93e-21 | 93.2 |
Find 83 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACCGTTTGGAAATTTA+AGG | 0.151014 | 1_4:-16972563 | None:intergenic |
| CTTTGGGATTGCTTCGTTTC+CGG | 0.165431 | 1_4:-16973677 | None:intergenic |
| ATAAGAGATAAAACAGTTAT+TGG | 0.179692 | 1_4:-16974511 | None:intergenic |
| TTTGCAAAGTCTTTCAAATA+TGG | 0.208675 | 1_4:+16972648 | Msa0153570:CDS |
| TTAATACCTTGTAGTTTCTT+TGG | 0.226171 | 1_4:-16973694 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1_4:+16974313 | Msa0153570:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.273749 | 1_4:-16972754 | None:intergenic |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1_4:+16973476 | Msa0153570:CDS |
| TATTTCTCCACATATATCTT+AGG | 0.281171 | 1_4:-16972513 | None:intergenic |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1_4:+16972604 | Msa0153570:CDS |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_4:+16974143 | Msa0153570:CDS |
| CTTGCCCTTTGAACTTGCTT+TGG | 0.300449 | 1_4:-16972864 | None:intergenic |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1_4:+16974482 | Msa0153570:CDS |
| TTTGGAAATTTAAGGAATAT+AGG | 0.302976 | 1_4:-16972555 | None:intergenic |
| ATATTTGGTTTCAAAAGAAT+TGG | 0.305799 | 1_4:+16972619 | Msa0153570:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1_4:+16973340 | Msa0153570:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1_4:+16972675 | Msa0153570:CDS |
| AGATATATGTGGAGAAATAT+TGG | 0.326941 | 1_4:+16972517 | Msa0153570:CDS |
| GTGGTGGTTGGAAAATATTC+AGG | 0.328531 | 1_4:+16973566 | Msa0153570:CDS |
| TTACAAAGAAAGATCTTGTT+TGG | 0.332547 | 1_4:+16973543 | Msa0153570:CDS |
| TAATACCTTGTAGTTTCTTT+GGG | 0.332861 | 1_4:-16973693 | None:intergenic |
| ATAATGACAATGAATGAAAA+AGG | 0.340671 | 1_4:-16973646 | None:intergenic |
| TTGGAAATTTAAGGAATATA+GGG | 0.346499 | 1_4:-16972554 | None:intergenic |
| CATTAACAGCTTCAGATGTT+TGG | 0.351304 | 1_4:-16973283 | None:intergenic |
| AATATTATTCTATGAAAATC+TGG | 0.366274 | 1_4:-16972373 | None:intergenic |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1_4:+16973477 | Msa0153570:CDS |
| GAGGTTTGTTTGAGGTATTA+TGG | 0.385416 | 1_4:+16973520 | Msa0153570:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.398912 | 1_4:-16972730 | None:intergenic |
| AAATGTCCAACTTAGTTCCT+AGG | 0.406585 | 1_4:-16974539 | None:intergenic |
| TATTTGGTTTCAAAAGAATT+GGG | 0.412169 | 1_4:+16972620 | Msa0153570:CDS |
| AATTATTATCAGAGTCTTTG+TGG | 0.412362 | 1_4:+16974362 | Msa0153570:CDS |
| GCAAGTTCAAAGGGCAAGAA+AGG | 0.419471 | 1_4:+16972869 | Msa0153570:CDS |
| AAAGAAGGCATAGTGGAGAT+TGG | 0.422403 | 1_4:+16974419 | Msa0153570:CDS |
| TGGAGAAAATTTATGAAAGA+AGG | 0.431214 | 1_4:+16974404 | Msa0153570:CDS |
| TACAAAGAAAGATCTTGTTT+GGG | 0.433738 | 1_4:+16973544 | Msa0153570:CDS |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.438669 | 1_4:+16974281 | Msa0153570:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_4:+16974314 | Msa0153570:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_4:+16973250 | Msa0153570:CDS |
| TTTATCTCTTATTTAAGCCT+AGG | 0.466265 | 1_4:+16974522 | Msa0153570:three_prime_UTR |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_4:-16973312 | None:intergenic |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1_4:+16972678 | Msa0153570:CDS |
| TTTAAGCCTAGGAACTAAGT+TGG | 0.479448 | 1_4:+16974533 | Msa0153570:three_prime_UTR |
| AGGATTTCATGAAAATATTG+TGG | 0.486037 | 1_4:+16974301 | Msa0153570:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.490908 | 1_4:+16974137 | Msa0153570:CDS |
| ATTGTCATTATTACTCGTGC+CGG | 0.499607 | 1_4:+16973658 | Msa0153570:CDS |
| GATCTTGTTTGGGTGGTGGT+TGG | 0.501988 | 1_4:+16973554 | Msa0153570:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_4:-16973311 | None:intergenic |
| TACTGTACAGAAGGTCATGA+TGG | 0.509347 | 1_4:+16974114 | Msa0153570:intron |
| CTCATCACTCTCTTCTTCAG+TGG | 0.522716 | 1_4:-16972820 | None:intergenic |
| GTAAATTTGAGATGATTAGA+CGG | 0.529786 | 1_4:+16973620 | Msa0153570:CDS |
| ATATTCCTTAAATTTCCAAA+CGG | 0.536219 | 1_4:+16972558 | Msa0153570:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_4:+16972756 | Msa0153570:CDS |
| AAGGGCAAGAGAAAATTCTC+AGG | 0.544762 | 1_4:+16972888 | Msa0153570:CDS |
| AAAGAAAGATCTTGTTTGGG+TGG | 0.548816 | 1_4:+16973547 | Msa0153570:CDS |
| GGAGTGTGGAGGTTTGTTTG+AGG | 0.550182 | 1_4:+16973512 | Msa0153570:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1_4:+16973491 | Msa0153570:CDS |
| GAGTGATGAGAGTTCAGATG+AGG | 0.552149 | 1_4:+16972833 | Msa0153570:CDS |
| AATGCCAAAGCAAGTTCAAA+GGG | 0.555536 | 1_4:+16972860 | Msa0153570:CDS |
| CAAGTTCAAAGGGCAAGAAA+GGG | 0.556600 | 1_4:+16972870 | Msa0153570:CDS |
| TCTTTAAGTTGATTGATGAA+AGG | 0.558870 | 1_4:+16974453 | Msa0153570:CDS |
| AAATGCCAAAGCAAGTTCAA+AGG | 0.559020 | 1_4:+16972859 | Msa0153570:CDS |
| ATTTATGAAAGAAGGCATAG+TGG | 0.564938 | 1_4:+16974412 | Msa0153570:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.567538 | 1_4:+16973241 | Msa0153570:intron |
| GAAAGATCTTGTTTGGGTGG+TGG | 0.568994 | 1_4:+16973550 | Msa0153570:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.570521 | 1_4:+16974265 | Msa0153570:intron |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_4:+16974161 | Msa0153570:CDS |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1_4:+16973481 | Msa0153570:CDS |
| GAGGGTTCCTAAGATATATG+TGG | 0.586451 | 1_4:+16972506 | Msa0153570:intron |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1_4:-16973345 | None:intergenic |
| TGTGGCTGCAGATTCAGTGA+AGG | 0.595787 | 1_4:+16974380 | Msa0153570:CDS |
| GCAATCCCAAAGAAACTACA+AGG | 0.598347 | 1_4:+16973688 | Msa0153570:CDS |
| TGGTGGTTGGAAAATATTCA+GGG | 0.603185 | 1_4:+16973567 | Msa0153570:CDS |
| GCTGCAGATTCAGTGAAGGT+TGG | 0.605491 | 1_4:+16974384 | Msa0153570:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_4:+16973329 | Msa0153570:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.611811 | 1_4:+16973501 | Msa0153570:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1_4:+16973498 | Msa0153570:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_4:+16972522 | Msa0153570:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 1_4:+16974327 | Msa0153570:CDS |
| TGTTCTCTTGAAAACTCACA+TGG | 0.651484 | 1_4:-16973442 | None:intergenic |
| CTTTATAGGTAGTAACAAAG+TGG | 0.653787 | 1_4:+16973235 | Msa0153570:intron |
| ACTGTACAGAAGGTCATGAT+GGG | 0.683207 | 1_4:+16974115 | Msa0153570:intron |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_4:+16974315 | Msa0153570:CDS |
| AGAAGCTCAAGAAAGTGATG+CGG | 0.702288 | 1_4:+16972794 | Msa0153570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1_4:16972733-16972752 | None:intergenic | 10.0% |
| !! | TATATATGATAAGAAAAAAT+TGG | + | chr1_4:16973128-16973147 | Msa0153570:intron | 10.0% |
| !!! | TATAGATTTTATTATTGTAA+AGG | + | chr1_4:16973801-16973820 | Msa0153570:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | + | chr1_4:16973895-16973914 | Msa0153570:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | - | chr1_4:16973989-16974008 | None:intergenic | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr1_4:16972733-16972752 | None:intergenic | 10.0% |
| !! | TATATATGATAAGAAAAAAT+TGG | + | chr1_4:16973128-16973147 | Msa0153570:intron | 10.0% |
| !!! | TATAGATTTTATTATTGTAA+AGG | + | chr1_4:16973801-16973820 | Msa0153570:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | + | chr1_4:16973895-16973914 | Msa0153570:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | - | chr1_4:16973989-16974008 | None:intergenic | 10.0% |
| !! | AATATTATTCTATGAAAATC+TGG | - | chr1_4:16972376-16972395 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_4:16972581-16972600 | Msa0153570:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_4:16972705-16972724 | Msa0153570:CDS | 15.0% |
| !!! | ATATGTGATTTTTTTTTTGA+AGG | + | chr1_4:16973086-16973105 | Msa0153570:intron | 15.0% |
| !!! | TATAATGATCTATTTTGTTT+AGG | - | chr1_4:16973213-16973232 | None:intergenic | 15.0% |
| !! | TAGATCATTATATACTTTAT+AGG | + | chr1_4:16973221-16973240 | Msa0153570:intron | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | + | chr1_4:16973922-16973941 | Msa0153570:intron | 15.0% |
| !!! | TTCAAATATCTCTAAATTTT+TGG | + | chr1_4:16974048-16974067 | Msa0153570:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+GGG | + | chr1_4:16974049-16974068 | Msa0153570:intron | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | - | chr1_4:16974183-16974202 | None:intergenic | 15.0% |
| !! | AATATTATTCTATGAAAATC+TGG | - | chr1_4:16972376-16972395 | None:intergenic | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1_4:16972581-16972600 | Msa0153570:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1_4:16972705-16972724 | Msa0153570:CDS | 15.0% |
| !!! | ATATGTGATTTTTTTTTTGA+AGG | + | chr1_4:16973086-16973105 | Msa0153570:intron | 15.0% |
| !!! | TATAATGATCTATTTTGTTT+AGG | - | chr1_4:16973213-16973232 | None:intergenic | 15.0% |
| !! | TAGATCATTATATACTTTAT+AGG | + | chr1_4:16973221-16973240 | Msa0153570:intron | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | + | chr1_4:16973922-16973941 | Msa0153570:intron | 15.0% |
| !!! | TTCAAATATCTCTAAATTTT+TGG | + | chr1_4:16974048-16974067 | Msa0153570:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+GGG | + | chr1_4:16974049-16974068 | Msa0153570:intron | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | - | chr1_4:16974183-16974202 | None:intergenic | 15.0% |
| !! | AGCATAAATGAAACATAATA+CGG | - | chr1_4:16972441-16972460 | None:intergenic | 20.0% |
| !! | GAAATCATACATAAACAATA+GGG | - | chr1_4:16972469-16972488 | None:intergenic | 20.0% |
| !! | AGAAATCATACATAAACAAT+AGG | - | chr1_4:16972470-16972489 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | - | chr1_4:16972557-16972576 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | - | chr1_4:16972558-16972577 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | + | chr1_4:16972558-16972577 | Msa0153570:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_4:16972580-16972599 | Msa0153570:CDS | 20.0% |
| !!! | ATATTTGGTTTCAAAAGAAT+TGG | + | chr1_4:16972619-16972638 | Msa0153570:CDS | 20.0% |
| !!! | TATTTGGTTTCAAAAGAATT+GGG | + | chr1_4:16972620-16972639 | Msa0153570:CDS | 20.0% |
| !! | ATAATGACAATGAATGAAAA+AGG | - | chr1_4:16973649-16973668 | None:intergenic | 20.0% |
| !!! | CAAATATCTCTAAATTTTTG+GGG | + | chr1_4:16974050-16974069 | Msa0153570:intron | 20.0% |
| !! | TTTATTTAATTAATCCTACC+GGG | - | chr1_4:16974182-16974201 | None:intergenic | 20.0% |
| !! | ATAAGAGATAAAACAGTTAT+TGG | - | chr1_4:16974514-16974533 | None:intergenic | 20.0% |
| !! | AGCATAAATGAAACATAATA+CGG | - | chr1_4:16972441-16972460 | None:intergenic | 20.0% |
| !! | GAAATCATACATAAACAATA+GGG | - | chr1_4:16972469-16972488 | None:intergenic | 20.0% |
| !! | AGAAATCATACATAAACAAT+AGG | - | chr1_4:16972470-16972489 | None:intergenic | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | - | chr1_4:16972557-16972576 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | - | chr1_4:16972558-16972577 | None:intergenic | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | + | chr1_4:16972558-16972577 | Msa0153570:CDS | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1_4:16972580-16972599 | Msa0153570:CDS | 20.0% |
| !!! | ATATTTGGTTTCAAAAGAAT+TGG | + | chr1_4:16972619-16972638 | Msa0153570:CDS | 20.0% |
| !!! | TATTTGGTTTCAAAAGAATT+GGG | + | chr1_4:16972620-16972639 | Msa0153570:CDS | 20.0% |
| !! | ATAATGACAATGAATGAAAA+AGG | - | chr1_4:16973649-16973668 | None:intergenic | 20.0% |
| !!! | CAAATATCTCTAAATTTTTG+GGG | + | chr1_4:16974050-16974069 | Msa0153570:intron | 20.0% |
| !! | TTTATTTAATTAATCCTACC+GGG | - | chr1_4:16974182-16974201 | None:intergenic | 20.0% |
| !! | ATAAGAGATAAAACAGTTAT+TGG | - | chr1_4:16974514-16974533 | None:intergenic | 20.0% |
| ! | TATTTCTCCACATATATCTT+AGG | - | chr1_4:16972516-16972535 | None:intergenic | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | + | chr1_4:16972517-16972536 | Msa0153570:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_4:16972584-16972603 | Msa0153570:CDS | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | + | chr1_4:16972648-16972667 | Msa0153570:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1_4:16972675-16972694 | Msa0153570:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1_4:16972678-16972697 | Msa0153570:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1_4:16972757-16972776 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1_4:16972756-16972775 | Msa0153570:CDS | 25.0% |
| !!! | TAATTGCTTTTAAGAGTCAA+TGG | + | chr1_4:16972956-16972975 | Msa0153570:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | - | chr1_4:16973314-16973333 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | - | chr1_4:16973315-16973334 | None:intergenic | 25.0% |
| !! | TAAACTATGATTTGAAACAG+TGG | + | chr1_4:16973416-16973435 | Msa0153570:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_4:16973460-16973479 | Msa0153570:CDS | 25.0% |
| ! | TTACAAAGAAAGATCTTGTT+TGG | + | chr1_4:16973543-16973562 | Msa0153570:CDS | 25.0% |
| !! | TACAAAGAAAGATCTTGTTT+GGG | + | chr1_4:16973544-16973563 | Msa0153570:CDS | 25.0% |
| !! | GTAAATTTGAGATGATTAGA+CGG | + | chr1_4:16973620-16973639 | Msa0153570:CDS | 25.0% |
| ! | TAATACCTTGTAGTTTCTTT+GGG | - | chr1_4:16973696-16973715 | None:intergenic | 25.0% |
| ! | TTAATACCTTGTAGTTTCTT+TGG | - | chr1_4:16973697-16973716 | None:intergenic | 25.0% |
| ! | AATTGAATCCAAGATAAGTT+AGG | - | chr1_4:16973948-16973967 | None:intergenic | 25.0% |
| ! | TTATTTAATTAATCCTACCG+GGG | - | chr1_4:16974181-16974200 | None:intergenic | 25.0% |
| ! | AGGATTTCATGAAAATATTG+TGG | + | chr1_4:16974301-16974320 | Msa0153570:CDS | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1_4:16974313-16974332 | Msa0153570:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1_4:16974314-16974333 | Msa0153570:CDS | 25.0% |
| ! | AATTATTATCAGAGTCTTTG+TGG | + | chr1_4:16974362-16974381 | Msa0153570:CDS | 25.0% |
| ! | TGGAGAAAATTTATGAAAGA+AGG | + | chr1_4:16974404-16974423 | Msa0153570:CDS | 25.0% |
| !!! | TCTTTAAGTTGATTGATGAA+AGG | + | chr1_4:16974453-16974472 | Msa0153570:CDS | 25.0% |
| !! | TTTATCTCTTATTTAAGCCT+AGG | + | chr1_4:16974522-16974541 | Msa0153570:three_prime_UTR | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | - | chr1_4:16972516-16972535 | None:intergenic | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | + | chr1_4:16972517-16972536 | Msa0153570:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1_4:16972584-16972603 | Msa0153570:CDS | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | + | chr1_4:16972648-16972667 | Msa0153570:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1_4:16972675-16972694 | Msa0153570:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1_4:16972678-16972697 | Msa0153570:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1_4:16972757-16972776 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1_4:16972756-16972775 | Msa0153570:CDS | 25.0% |
| !!! | TAATTGCTTTTAAGAGTCAA+TGG | + | chr1_4:16972956-16972975 | Msa0153570:intron | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | - | chr1_4:16973314-16973333 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | - | chr1_4:16973315-16973334 | None:intergenic | 25.0% |
| !! | TAAACTATGATTTGAAACAG+TGG | + | chr1_4:16973416-16973435 | Msa0153570:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1_4:16973460-16973479 | Msa0153570:CDS | 25.0% |
| ! | TTACAAAGAAAGATCTTGTT+TGG | + | chr1_4:16973543-16973562 | Msa0153570:CDS | 25.0% |
| !! | TACAAAGAAAGATCTTGTTT+GGG | + | chr1_4:16973544-16973563 | Msa0153570:CDS | 25.0% |
| !! | GTAAATTTGAGATGATTAGA+CGG | + | chr1_4:16973620-16973639 | Msa0153570:CDS | 25.0% |
| ! | TAATACCTTGTAGTTTCTTT+GGG | - | chr1_4:16973696-16973715 | None:intergenic | 25.0% |
| ! | TTAATACCTTGTAGTTTCTT+TGG | - | chr1_4:16973697-16973716 | None:intergenic | 25.0% |
| ! | AATTGAATCCAAGATAAGTT+AGG | - | chr1_4:16973948-16973967 | None:intergenic | 25.0% |
| ! | TTATTTAATTAATCCTACCG+GGG | - | chr1_4:16974181-16974200 | None:intergenic | 25.0% |
| ! | AGGATTTCATGAAAATATTG+TGG | + | chr1_4:16974301-16974320 | Msa0153570:CDS | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr1_4:16974313-16974332 | Msa0153570:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr1_4:16974314-16974333 | Msa0153570:CDS | 25.0% |
| ! | AATTATTATCAGAGTCTTTG+TGG | + | chr1_4:16974362-16974381 | Msa0153570:CDS | 25.0% |
| ! | TGGAGAAAATTTATGAAAGA+AGG | + | chr1_4:16974404-16974423 | Msa0153570:CDS | 25.0% |
| !!! | TCTTTAAGTTGATTGATGAA+AGG | + | chr1_4:16974453-16974472 | Msa0153570:CDS | 25.0% |
| !! | TTTATCTCTTATTTAAGCCT+AGG | + | chr1_4:16974522-16974541 | Msa0153570:three_prime_UTR | 25.0% |
| TCTGAATTTCTTTATTGCAG+AGG | + | chr1_4:16972487-16972506 | Msa0153570:intron | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | + | chr1_4:16972488-16972507 | Msa0153570:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_4:16972522-16972541 | Msa0153570:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | - | chr1_4:16972576-16972595 | None:intergenic | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1_4:16972692-16972711 | Msa0153570:CDS | 30.0% |
| TCTGAAAGCTTGTAAATCTA+AGG | + | chr1_4:16973003-16973022 | Msa0153570:intron | 30.0% | |
| CTGAAAGCTTGTAAATCTAA+GGG | + | chr1_4:16973004-16973023 | Msa0153570:intron | 30.0% | |
| AAGTGCATAATTAAGAAGCA+TGG | + | chr1_4:16973042-16973061 | Msa0153570:intron | 30.0% | |
| CTTTATAGGTAGTAACAAAG+TGG | + | chr1_4:16973235-16973254 | Msa0153570:intron | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | + | chr1_4:16973476-16973495 | Msa0153570:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1_4:16973477-16973496 | Msa0153570:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1_4:16974315-16974334 | Msa0153570:CDS | 30.0% | |
| ! | ATTTATGAAAGAAGGCATAG+TGG | + | chr1_4:16974412-16974431 | Msa0153570:CDS | 30.0% |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1_4:16974482-16974501 | Msa0153570:CDS | 30.0% | |
| TCTGAATTTCTTTATTGCAG+AGG | + | chr1_4:16972487-16972506 | Msa0153570:intron | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | + | chr1_4:16972488-16972507 | Msa0153570:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1_4:16972522-16972541 | Msa0153570:CDS | 30.0% | |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | - | chr1_4:16972576-16972595 | None:intergenic | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1_4:16972692-16972711 | Msa0153570:CDS | 30.0% |
| TCTGAAAGCTTGTAAATCTA+AGG | + | chr1_4:16973003-16973022 | Msa0153570:intron | 30.0% | |
| CTGAAAGCTTGTAAATCTAA+GGG | + | chr1_4:16973004-16973023 | Msa0153570:intron | 30.0% | |
| AAGTGCATAATTAAGAAGCA+TGG | + | chr1_4:16973042-16973061 | Msa0153570:intron | 30.0% | |
| CTTTATAGGTAGTAACAAAG+TGG | + | chr1_4:16973235-16973254 | Msa0153570:intron | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | + | chr1_4:16973476-16973495 | Msa0153570:CDS | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1_4:16973477-16973496 | Msa0153570:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr1_4:16974315-16974334 | Msa0153570:CDS | 30.0% | |
| ! | ATTTATGAAAGAAGGCATAG+TGG | + | chr1_4:16974412-16974431 | Msa0153570:CDS | 30.0% |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1_4:16974482-16974501 | Msa0153570:CDS | 30.0% | |
| CAACACCGTTTGGAAATTTA+AGG | - | chr1_4:16972566-16972585 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_4:16972594-16972613 | Msa0153570:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_4:16972604-16972623 | Msa0153570:CDS | 35.0% | |
| ! | ACTTTCTTGAGCTTCTTTTG+TGG | - | chr1_4:16972790-16972809 | None:intergenic | 35.0% |
| AAATGCCAAAGCAAGTTCAA+AGG | + | chr1_4:16972859-16972878 | Msa0153570:CDS | 35.0% | |
| AATGCCAAAGCAAGTTCAAA+GGG | + | chr1_4:16972860-16972879 | Msa0153570:CDS | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | + | chr1_4:16972898-16972917 | Msa0153570:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | - | chr1_4:16973286-16973305 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | + | chr1_4:16973329-16973348 | Msa0153570:CDS | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | + | chr1_4:16973340-16973359 | Msa0153570:CDS | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | - | chr1_4:16973348-16973367 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | - | chr1_4:16973445-16973464 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_4:16973491-16973510 | Msa0153570:CDS | 35.0% |
| ! | GAGGTTTGTTTGAGGTATTA+TGG | + | chr1_4:16973520-16973539 | Msa0153570:CDS | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | + | chr1_4:16973547-16973566 | Msa0153570:CDS | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | + | chr1_4:16973567-16973586 | Msa0153570:CDS | 35.0% | |
| ATTGTCATTATTACTCGTGC+CGG | + | chr1_4:16973658-16973677 | Msa0153570:CDS | 35.0% | |
| ! | GTAATTGGCCTAACTTATCT+TGG | + | chr1_4:16973937-16973956 | Msa0153570:intron | 35.0% |
| GATGAAGCATAACACATTCA+AGG | + | chr1_4:16974137-16974156 | Msa0153570:CDS | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | + | chr1_4:16974143-16974162 | Msa0153570:CDS | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+TGG | - | chr1_4:16974284-16974303 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+AGG | + | chr1_4:16974281-16974300 | Msa0153570:CDS | 35.0% | |
| TTTAAGCCTAGGAACTAAGT+TGG | + | chr1_4:16974533-16974552 | Msa0153570:three_prime_UTR | 35.0% | |
| AAATGTCCAACTTAGTTCCT+AGG | - | chr1_4:16974542-16974561 | None:intergenic | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | - | chr1_4:16972566-16972585 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1_4:16972594-16972613 | Msa0153570:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1_4:16972604-16972623 | Msa0153570:CDS | 35.0% | |
| ! | ACTTTCTTGAGCTTCTTTTG+TGG | - | chr1_4:16972790-16972809 | None:intergenic | 35.0% |
| AAATGCCAAAGCAAGTTCAA+AGG | + | chr1_4:16972859-16972878 | Msa0153570:CDS | 35.0% | |
| AATGCCAAAGCAAGTTCAAA+GGG | + | chr1_4:16972860-16972879 | Msa0153570:CDS | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | + | chr1_4:16972898-16972917 | Msa0153570:intron | 35.0% | |
| CATTAACAGCTTCAGATGTT+TGG | - | chr1_4:16973286-16973305 | None:intergenic | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | + | chr1_4:16973329-16973348 | Msa0153570:CDS | 35.0% | |
| !! | TTACACCAATGGCTATTTCT+TGG | + | chr1_4:16973340-16973359 | Msa0153570:CDS | 35.0% |
| ACTTACCAAGAAATAGCCAT+TGG | - | chr1_4:16973348-16973367 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACA+TGG | - | chr1_4:16973445-16973464 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1_4:16973491-16973510 | Msa0153570:CDS | 35.0% |
| ! | GAGGTTTGTTTGAGGTATTA+TGG | + | chr1_4:16973520-16973539 | Msa0153570:CDS | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | + | chr1_4:16973547-16973566 | Msa0153570:CDS | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | + | chr1_4:16973567-16973586 | Msa0153570:CDS | 35.0% | |
| ATTGTCATTATTACTCGTGC+CGG | + | chr1_4:16973658-16973677 | Msa0153570:CDS | 35.0% | |
| ! | GTAATTGGCCTAACTTATCT+TGG | + | chr1_4:16973937-16973956 | Msa0153570:intron | 35.0% |
| GATGAAGCATAACACATTCA+AGG | + | chr1_4:16974137-16974156 | Msa0153570:CDS | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | + | chr1_4:16974143-16974162 | Msa0153570:CDS | 35.0% |
| ! | CCTCTTTTCATAAACTCCTT+TGG | - | chr1_4:16974284-16974303 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+AGG | + | chr1_4:16974281-16974300 | Msa0153570:CDS | 35.0% | |
| TTTAAGCCTAGGAACTAAGT+TGG | + | chr1_4:16974533-16974552 | Msa0153570:three_prime_UTR | 35.0% | |
| AAATGTCCAACTTAGTTCCT+AGG | - | chr1_4:16974542-16974561 | None:intergenic | 35.0% | |
| GAGGGTTCCTAAGATATATG+TGG | + | chr1_4:16972506-16972525 | Msa0153570:intron | 40.0% | |
| AGAAGCTCAAGAAAGTGATG+CGG | + | chr1_4:16972794-16972813 | Msa0153570:CDS | 40.0% | |
| CAAGTTCAAAGGGCAAGAAA+GGG | + | chr1_4:16972870-16972889 | Msa0153570:CDS | 40.0% | |
| AAGGGCAAGAGAAAATTCTC+AGG | + | chr1_4:16972888-16972907 | Msa0153570:CDS | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1_4:16973261-16973280 | None:intergenic | 40.0% |
| GTGGTGGTTGGAAAATATTC+AGG | + | chr1_4:16973566-16973585 | Msa0153570:CDS | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | + | chr1_4:16973688-16973707 | Msa0153570:CDS | 40.0% | |
| TTATGCCTGTACTGTACAGA+AGG | + | chr1_4:16974105-16974124 | Msa0153570:intron | 40.0% | |
| TACTGTACAGAAGGTCATGA+TGG | + | chr1_4:16974114-16974133 | Msa0153570:intron | 40.0% | |
| ACTGTACAGAAGGTCATGAT+GGG | + | chr1_4:16974115-16974134 | Msa0153570:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | + | chr1_4:16974265-16974284 | Msa0153570:intron | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1_4:16974327-16974346 | Msa0153570:CDS | 40.0% | |
| ! | AAAGAAGGCATAGTGGAGAT+TGG | + | chr1_4:16974419-16974438 | Msa0153570:CDS | 40.0% |
| GAGGGTTCCTAAGATATATG+TGG | + | chr1_4:16972506-16972525 | Msa0153570:intron | 40.0% | |
| AGAAGCTCAAGAAAGTGATG+CGG | + | chr1_4:16972794-16972813 | Msa0153570:CDS | 40.0% | |
| CAAGTTCAAAGGGCAAGAAA+GGG | + | chr1_4:16972870-16972889 | Msa0153570:CDS | 40.0% | |
| AAGGGCAAGAGAAAATTCTC+AGG | + | chr1_4:16972888-16972907 | Msa0153570:CDS | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr1_4:16973261-16973280 | None:intergenic | 40.0% |
| GTGGTGGTTGGAAAATATTC+AGG | + | chr1_4:16973566-16973585 | Msa0153570:CDS | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | + | chr1_4:16973688-16973707 | Msa0153570:CDS | 40.0% | |
| TTATGCCTGTACTGTACAGA+AGG | + | chr1_4:16974105-16974124 | Msa0153570:intron | 40.0% | |
| TACTGTACAGAAGGTCATGA+TGG | + | chr1_4:16974114-16974133 | Msa0153570:intron | 40.0% | |
| ACTGTACAGAAGGTCATGAT+GGG | + | chr1_4:16974115-16974134 | Msa0153570:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | + | chr1_4:16974265-16974284 | Msa0153570:intron | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr1_4:16974327-16974346 | Msa0153570:CDS | 40.0% | |
| ! | AAAGAAGGCATAGTGGAGAT+TGG | + | chr1_4:16974419-16974438 | Msa0153570:CDS | 40.0% |
| CTCATCACTCTCTTCTTCAG+TGG | - | chr1_4:16972823-16972842 | None:intergenic | 45.0% | |
| GAGTGATGAGAGTTCAGATG+AGG | + | chr1_4:16972833-16972852 | Msa0153570:CDS | 45.0% | |
| ! | CTTGCCCTTTGAACTTGCTT+TGG | - | chr1_4:16972867-16972886 | None:intergenic | 45.0% |
| GCAAGTTCAAAGGGCAAGAA+AGG | + | chr1_4:16972869-16972888 | Msa0153570:CDS | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1_4:16973241-16973260 | Msa0153570:intron | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1_4:16973481-16973500 | Msa0153570:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_4:16973498-16973517 | Msa0153570:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | + | chr1_4:16973501-16973520 | Msa0153570:CDS | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | + | chr1_4:16973550-16973569 | Msa0153570:CDS | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | - | chr1_4:16973680-16973699 | None:intergenic | 45.0% |
| CATGACCTTCTGTACAGTAC+AGG | - | chr1_4:16974113-16974132 | None:intergenic | 45.0% | |
| CTCATCACTCTCTTCTTCAG+TGG | - | chr1_4:16972823-16972842 | None:intergenic | 45.0% | |
| GAGTGATGAGAGTTCAGATG+AGG | + | chr1_4:16972833-16972852 | Msa0153570:CDS | 45.0% | |
| ! | CTTGCCCTTTGAACTTGCTT+TGG | - | chr1_4:16972867-16972886 | None:intergenic | 45.0% |
| GCAAGTTCAAAGGGCAAGAA+AGG | + | chr1_4:16972869-16972888 | Msa0153570:CDS | 45.0% | |
| AGGTAGTAACAAAGTGGCCA+TGG | + | chr1_4:16973241-16973260 | Msa0153570:intron | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1_4:16973481-16973500 | Msa0153570:CDS | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1_4:16973498-16973517 | Msa0153570:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | + | chr1_4:16973501-16973520 | Msa0153570:CDS | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | + | chr1_4:16973550-16973569 | Msa0153570:CDS | 45.0% |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | - | chr1_4:16973680-16973699 | None:intergenic | 45.0% |
| CATGACCTTCTGTACAGTAC+AGG | - | chr1_4:16974113-16974132 | None:intergenic | 45.0% | |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | + | chr1_4:16973861-16973880 | Msa0153570:intron | 5.0% |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | + | chr1_4:16973861-16973880 | Msa0153570:intron | 5.0% |
| CAAAGTGGCCATGGTGAAGA+AGG | + | chr1_4:16973250-16973269 | Msa0153570:CDS | 50.0% | |
| ! | GGAGTGTGGAGGTTTGTTTG+AGG | + | chr1_4:16973512-16973531 | Msa0153570:CDS | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | + | chr1_4:16973554-16973573 | Msa0153570:CDS | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | + | chr1_4:16974161-16974180 | Msa0153570:CDS | 50.0% | |
| TGTGGCTGCAGATTCAGTGA+AGG | + | chr1_4:16974380-16974399 | Msa0153570:CDS | 50.0% | |
| GCTGCAGATTCAGTGAAGGT+TGG | + | chr1_4:16974384-16974403 | Msa0153570:CDS | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | + | chr1_4:16973250-16973269 | Msa0153570:CDS | 50.0% | |
| ! | GGAGTGTGGAGGTTTGTTTG+AGG | + | chr1_4:16973512-16973531 | Msa0153570:CDS | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | + | chr1_4:16973554-16973573 | Msa0153570:CDS | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | + | chr1_4:16974161-16974180 | Msa0153570:CDS | 50.0% | |
| TGTGGCTGCAGATTCAGTGA+AGG | + | chr1_4:16974380-16974399 | Msa0153570:CDS | 50.0% | |
| GCTGCAGATTCAGTGAAGGT+TGG | + | chr1_4:16974384-16974403 | Msa0153570:CDS | 50.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | + | chr1_4:16974165-16974184 | Msa0153570:intron | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | + | chr1_4:16974165-16974184 | Msa0153570:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16972355 | 16974609 | 16972355 | ID=Msa0153570;Name=Msa0153570 |
| chr1_4 | mRNA | 16972355 | 16974609 | 16972355 | ID=Msa0153570-mRNA-1;Parent=Msa0153570;Name=Msa0153570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.8|0.66|1|1|1|6|92|384 |
| chr1_4 | exon | 16972355 | 16972411 | 16972355 | ID=Msa0153570-mRNA-1:exon:6462;Parent=Msa0153570-mRNA-1 |
| chr1_4 | exon | 16972507 | 16972909 | 16972507 | ID=Msa0153570-mRNA-1:exon:6463;Parent=Msa0153570-mRNA-1 |
| chr1_4 | exon | 16973243 | 16973361 | 16973243 | ID=Msa0153570-mRNA-1:exon:6464;Parent=Msa0153570-mRNA-1 |
| chr1_4 | exon | 16973436 | 16973709 | 16973436 | ID=Msa0153570-mRNA-1:exon:6465;Parent=Msa0153570-mRNA-1 |
| chr1_4 | exon | 16974124 | 16974182 | 16974124 | ID=Msa0153570-mRNA-1:exon:6466;Parent=Msa0153570-mRNA-1 |
| chr1_4 | exon | 16974275 | 16974609 | 16974275 | ID=Msa0153570-mRNA-1:exon:6467;Parent=Msa0153570-mRNA-1 |
| chr1_4 | CDS | 16972355 | 16972411 | 16972355 | ID=Msa0153570-mRNA-1:cds;Parent=Msa0153570-mRNA-1 |
| chr1_4 | CDS | 16972507 | 16972909 | 16972507 | ID=Msa0153570-mRNA-1:cds;Parent=Msa0153570-mRNA-1 |
| chr1_4 | CDS | 16973243 | 16973361 | 16973243 | ID=Msa0153570-mRNA-1:cds;Parent=Msa0153570-mRNA-1 |
| chr1_4 | CDS | 16973436 | 16973709 | 16973436 | ID=Msa0153570-mRNA-1:cds;Parent=Msa0153570-mRNA-1 |
| chr1_4 | CDS | 16974124 | 16974182 | 16974124 | ID=Msa0153570-mRNA-1:cds;Parent=Msa0153570-mRNA-1 |
| chr1_4 | CDS | 16974275 | 16974517 | 16974275 | ID=Msa0153570-mRNA-1:cds;Parent=Msa0153570-mRNA-1 |
| chr1_4 | three_prime_UTR | 16974518 | 16974609 | 16974518 | ID=Msa0153570-mRNA-1:three_prime_utr;Parent=Msa0153570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
