Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153580 | A0A396HHP9 | 87.568 | 185 | 23 | 0 | 80 | 264 | 54 | 238 | 2.30e-114 | 338 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153580 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153580 | MtrunA17_Chr6g0476171 | 87.568 | 185 | 23 | 0 | 80 | 264 | 54 | 238 | 4.43e-118 | 338 |
| Msa0153580 | MtrunA17_Chr1g0163131 | 33.654 | 312 | 138 | 10 | 8 | 267 | 6 | 300 | 3.32e-46 | 157 |
| Msa0153580 | MtrunA17_Chr1g0163101 | 79.221 | 77 | 16 | 0 | 4 | 80 | 1 | 77 | 8.59e-39 | 134 |
| Msa0153580 | MtrunA17_Chr1g0163151 | 39.674 | 184 | 98 | 5 | 81 | 260 | 36 | 210 | 6.04e-34 | 122 |
| Msa0153580 | MtrunA17_Chr1g0163201 | 39.891 | 183 | 99 | 5 | 81 | 260 | 207 | 381 | 6.32e-32 | 122 |
| Msa0153580 | MtrunA17_Chr1g0163111 | 37.696 | 191 | 102 | 8 | 81 | 260 | 33 | 217 | 6.94e-32 | 117 |
| Msa0153580 | MtrunA17_Chr1g0162151 | 39.674 | 184 | 87 | 6 | 77 | 260 | 37 | 196 | 2.19e-30 | 113 |
| Msa0153580 | MtrunA17_Chr1g0163181 | 33.493 | 209 | 105 | 6 | 81 | 260 | 215 | 418 | 4.06e-27 | 109 |
| Msa0153580 | MtrunA17_Chr1g0163181 | 25.641 | 273 | 155 | 10 | 29 | 259 | 14 | 280 | 8.18e-12 | 65.1 |
| Msa0153580 | MtrunA17_Chr1g0163091 | 51.087 | 92 | 43 | 2 | 81 | 172 | 41 | 130 | 1.26e-23 | 94.4 |
| Msa0153580 | MtrunA17_Chr1g0162161 | 84.444 | 45 | 7 | 0 | 35 | 79 | 3 | 47 | 1.58e-20 | 85.9 |
| Msa0153580 | MtrunA17_Chr1g0163141 | 76.596 | 47 | 11 | 0 | 34 | 80 | 9 | 55 | 1.68e-20 | 86.7 |
| Msa0153580 | MtrunA17_Chr6g0476181 | 78.261 | 46 | 10 | 0 | 35 | 80 | 1 | 46 | 5.03e-20 | 84.7 |
| Msa0153580 | MtrunA17_Chr1g0163251 | 48.913 | 92 | 45 | 2 | 81 | 172 | 202 | 291 | 1.88e-18 | 84.3 |
| Msa0153580 | MtrunA17_Chr1g0163251 | 27.586 | 261 | 150 | 12 | 29 | 258 | 14 | 266 | 3.23e-14 | 72.0 |
| Msa0153580 | MtrunA17_Chr1g0163081 | 76.087 | 46 | 11 | 0 | 35 | 80 | 5 | 50 | 8.11e-18 | 78.2 |
| Msa0153580 | MtrunA17_Chr1g0163121 | 63.265 | 49 | 18 | 0 | 34 | 82 | 9 | 57 | 8.96e-17 | 75.5 |
| Msa0153580 | MtrunA17_Chr1g0163261 | 53.409 | 88 | 37 | 4 | 80 | 166 | 204 | 288 | 1.92e-16 | 77.8 |
| Msa0153580 | MtrunA17_Chr1g0163261 | 41.176 | 68 | 39 | 1 | 16 | 82 | 5 | 72 | 2.38e-12 | 65.9 |
| Msa0153580 | MtrunA17_Chr1g0171611 | 45.122 | 82 | 43 | 1 | 80 | 159 | 184 | 265 | 4.05e-14 | 70.9 |
| Msa0153580 | MtrunA17_Chr1g0171611 | 41.538 | 65 | 37 | 1 | 16 | 79 | 5 | 69 | 9.26e-13 | 67.0 |
| Msa0153580 | MtrunA17_Chr1g0163231 | 24.638 | 276 | 168 | 10 | 16 | 262 | 5 | 269 | 5.44e-14 | 70.9 |
| Msa0153580 | MtrunA17_Chr1g0163231 | 45.783 | 83 | 41 | 2 | 80 | 159 | 196 | 277 | 2.51e-13 | 68.9 |
| Msa0153580 | MtrunA17_Chr5g0419211 | 33.333 | 102 | 64 | 2 | 71 | 172 | 4 | 101 | 1.37e-12 | 63.2 |
| Msa0153580 | MtrunA17_Chr5g0419201 | 32.773 | 119 | 68 | 3 | 1 | 118 | 1 | 108 | 7.49e-11 | 60.1 |
| Msa0153580 | MtrunA17_Chr4g0067431 | 39.189 | 74 | 43 | 2 | 15 | 86 | 10 | 83 | 9.63e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCACATGACAAATTTA+AGG | 0.173779 | 1_4:+17028900 | Msa0153580:CDS |
| TATAATCCATACCTCGATTA+TGG | 0.210635 | 1_4:+17029131 | Msa0153580:CDS |
| TTGCATTCTCTCACGAATTC+TGG | 0.238243 | 1_4:-17029173 | None:intergenic |
| TTAAACAGAGGATACCTATT+TGG | 0.252919 | 1_4:+17028064 | Msa0153580:intron |
| GGGAATGGTTTCTTTGTTGT+TGG | 0.314235 | 1_4:-17028315 | None:intergenic |
| TTTGGAAGTCTAAGCGATAT+TGG | 0.316363 | 1_4:-17027898 | None:intergenic |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1_4:+17027923 | Msa0153580:CDS |
| TACAACGCGGTGACGATGTT+TGG | 0.370214 | 1_4:+17027947 | Msa0153580:CDS |
| GAAATACCTTGAAAATGCTC+TGG | 0.394859 | 1_4:-17028336 | None:intergenic |
| CAAAATCAATCATGTGTTCA+AGG | 0.400866 | 1_4:+17029239 | Msa0153580:CDS |
| AAGGTTTCAATTATTCTAGA+TGG | 0.401711 | 1_4:+17029258 | Msa0153580:CDS |
| ACGATGTTTGGCTTCAGAAT+TGG | 0.404471 | 1_4:+17027959 | Msa0153580:CDS |
| AGAGAATGCAAAGTAAAGAT+TGG | 0.430681 | 1_4:+17029185 | Msa0153580:CDS |
| ATAATCCATACCTCGATTAT+GGG | 0.450089 | 1_4:+17029132 | Msa0153580:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_4:+17028133 | Msa0153580:CDS |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1_4:+17027924 | Msa0153580:CDS |
| ATAGTAATTGTGAATGAAAG+TGG | 0.456460 | 1_4:-17028288 | None:intergenic |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1_4:+17028231 | Msa0153580:CDS |
| TGTCTCTCTACGAATTTCCT+TGG | 0.471061 | 1_4:-17027856 | None:intergenic |
| ATTCAGTGGAGTTGAAAGTA+GGG | 0.477979 | 1_4:+17029081 | Msa0153580:CDS |
| AGGAACATGGTTTGTAGAGG+TGG | 0.484845 | 1_4:+17029106 | Msa0153580:CDS |
| CCTTGAAAATGCTCTGGGAA+TGG | 0.485126 | 1_4:-17028330 | None:intergenic |
| GATTATGGGTGGTTCACTAA+AGG | 0.486734 | 1_4:+17029146 | Msa0153580:CDS |
| GGAACATGGTTTGTAGAGGT+GGG | 0.494808 | 1_4:+17029107 | Msa0153580:CDS |
| TGAAAGTAGGGGAAGGAACA+TGG | 0.498346 | 1_4:+17029093 | Msa0153580:CDS |
| GATTCAGTGGAGTTGAAAGT+AGG | 0.514511 | 1_4:+17029080 | Msa0153580:CDS |
| ATATCGCTTAGACTTCCAAA+TGG | 0.516695 | 1_4:+17027901 | Msa0153580:CDS |
| TTCAGTGGAGTTGAAAGTAG+GGG | 0.529294 | 1_4:+17029082 | Msa0153580:CDS |
| GGAAATTCGTAGAGAGACAT+TGG | 0.530097 | 1_4:+17027860 | Msa0153580:CDS |
| TTATGCCTCTTCAACAGACT+TGG | 0.532458 | 1_4:-17029044 | None:intergenic |
| TACTGCCAAGTCTGTTGAAG+AGG | 0.535316 | 1_4:+17029039 | Msa0153580:CDS |
| TATATTTAGCGGAGATTCAG+TGG | 0.538001 | 1_4:+17029067 | Msa0153580:CDS |
| AAGAGGCATAATATATTTAG+CGG | 0.538890 | 1_4:+17029056 | Msa0153580:CDS |
| AAATACCTTGAAAATGCTCT+GGG | 0.549451 | 1_4:-17028335 | None:intergenic |
| AACCACCCATAATCGAGGTA+TGG | 0.557688 | 1_4:-17029137 | None:intergenic |
| TGTTCTTGCAGATGATTCCA+AGG | 0.559130 | 1_4:+17027839 | Msa0153580:intron |
| TTTGGCTTCAGAATTGGAAG+AGG | 0.559399 | 1_4:+17027965 | Msa0153580:CDS |
| AAGTCTAAGCGATATTGGAT+TGG | 0.559908 | 1_4:-17027893 | None:intergenic |
| TATCGCTTAGACTTCCAAAT+GGG | 0.562651 | 1_4:+17027902 | Msa0153580:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.569481 | 1_4:+17028134 | Msa0153580:CDS |
| ATGGGTGGTTCACTAAAGGT+TGG | 0.570183 | 1_4:+17029150 | Msa0153580:CDS |
| AAGGCAACGATTAGAAGTGT+TGG | 0.578046 | 1_4:+17028123 | Msa0153580:CDS |
| CTAACAACAATATTAGGGAG+TGG | 0.599682 | 1_4:-17029285 | None:intergenic |
| GGACGTGGCAGTGAAGCTCA+TGG | 0.611140 | 1_4:+17026347 | Msa0153580:CDS |
| GGAAGGAACATGGTTTGTAG+AGG | 0.613086 | 1_4:+17029103 | Msa0153580:CDS |
| TACATGAATGAGTTATTGCG+AGG | 0.621321 | 1_4:+17028099 | Msa0153580:CDS |
| TCGAGTGTTCACAATGGACG+TGG | 0.628713 | 1_4:+17026332 | Msa0153580:CDS |
| AACGATTAGAAGTGTTGGTG+AGG | 0.638209 | 1_4:+17028128 | Msa0153580:CDS |
| ATCCATACCTCGATTATGGG+TGG | 0.639230 | 1_4:+17029135 | Msa0153580:CDS |
| GAATGAGTTATTGCGAGGGA+AGG | 0.643476 | 1_4:+17028104 | Msa0153580:CDS |
| GTGGAGTTGAAAGTAGGGGA+AGG | 0.644645 | 1_4:+17029086 | Msa0153580:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.648324 | 1_4:+17028139 | Msa0153580:CDS |
| ACATGAATGAGTTATTGCGA+GGG | 0.670475 | 1_4:+17028100 | Msa0153580:CDS |
| TAGTGAACCACCCATAATCG+AGG | 0.694278 | 1_4:-17029142 | None:intergenic |
| ATGATGTCGAGTGTTCACAA+TGG | 0.758516 | 1_4:+17026326 | Msa0153580:CDS |
| AAAATGAATTGGGTACAACG+CGG | 0.771281 | 1_4:+17027934 | Msa0153580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATGAATAAGAAAAA+AGG | - | chr1_4:17026444-17026463 | None:intergenic | 15.0% |
| !! | AAGTTATTAATGTTACAATT+TGG | - | chr1_4:17026983-17027002 | None:intergenic | 15.0% |
| !! | ATTGTAACATTAATAACTTA+TGG | + | chr1_4:17026984-17027003 | Msa0153580:intron | 15.0% |
| !! | TTGTAACATTAATAACTTAT+GGG | + | chr1_4:17026985-17027004 | Msa0153580:intron | 15.0% |
| !!! | TTATAATTTCTTTGATTTCA+TGG | + | chr1_4:17027240-17027259 | Msa0153580:intron | 15.0% |
| !! | TTTCTTATAATAATTGAGAA+TGG | + | chr1_4:17027567-17027586 | Msa0153580:intron | 15.0% |
| !!! | TTATTACAGGGTTTTAAAAA+TGG | - | chr1_4:17026481-17026500 | None:intergenic | 20.0% |
| !! | TTCTTCTCAAGAAAAAAAAA+AGG | + | chr1_4:17026581-17026600 | Msa0153580:intron | 20.0% |
| !! | AAAAGGCTTAATTAATGATT+TGG | + | chr1_4:17026598-17026617 | Msa0153580:intron | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | - | chr1_4:17026656-17026675 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | - | chr1_4:17026657-17026676 | None:intergenic | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | + | chr1_4:17026658-17026677 | Msa0153580:intron | 20.0% |
| !!! | ACGAAACTTTTAATAGTTAA+GGG | - | chr1_4:17026925-17026944 | None:intergenic | 20.0% |
| !!! | AACGAAACTTTTAATAGTTA+AGG | - | chr1_4:17026924-17026943 | None:intergenic | 20.0% |
| !!! | AACTATTAAAAGTTTCGTTT+TGG | + | chr1_4:17026718-17026737 | Msa0153580:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr1_4:17026835-17026854 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr1_4:17026835-17026854 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr1_4:17026835-17026854 | Msa0153580:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr1_4:17026835-17026854 | Msa0153580:intron | 20.0% |
| !!! | ACTTATTTTTTGTTTCGTTT+TGG | - | chr1_4:17026893-17026912 | None:intergenic | 20.0% |
| !! | ACGAAACAAAAAATAAGTTA+AGG | + | chr1_4:17026895-17026914 | Msa0153580:intron | 20.0% |
| !! | CGAAACAAAAAATAAGTTAA+GGG | + | chr1_4:17026896-17026915 | Msa0153580:intron | 20.0% |
| !!! | AACTATTAAAAGTTTCGTTT+TGG | - | chr1_4:17026718-17026737 | None:intergenic | 20.0% |
| !!! | AACGAAACTTTTAATAGTTA+AGG | + | chr1_4:17026924-17026943 | Msa0153580:intron | 20.0% |
| !!! | ACGAAACTTTTAATAGTTAA+GGG | + | chr1_4:17026925-17026944 | Msa0153580:intron | 20.0% |
| !!! | ATTTTAAGCAATGTATTGAT+TGG | - | chr1_4:17027114-17027133 | None:intergenic | 20.0% |
| !!! | CAACAATGATATTTTGTTAT+TGG | + | chr1_4:17027137-17027156 | Msa0153580:intron | 20.0% |
| !! | TACGGATTTATTATCATTAA+CGG | + | chr1_4:17027457-17027476 | Msa0153580:intron | 20.0% |
| !! | TTTATTATCATTAACGGAAT+TGG | + | chr1_4:17027463-17027482 | Msa0153580:intron | 20.0% |
| !! | ATCAATATCTATTTAAACAG+AGG | + | chr1_4:17028052-17028071 | Msa0153580:intron | 20.0% |
| !!! | TATTCTTTTGAAAACCAAAT+AGG | - | chr1_4:17028081-17028100 | None:intergenic | 20.0% |
| !! | ATATCAATAACAAAATGGAT+TGG | - | chr1_4:17028599-17028618 | None:intergenic | 20.0% |
| !! | ATAGCATATCAATAACAAAA+TGG | - | chr1_4:17028604-17028623 | None:intergenic | 20.0% |
| ! | CATGAAAGGTTATTATTACA+GGG | - | chr1_4:17026493-17026512 | None:intergenic | 25.0% |
| ! | ACATGAAAGGTTATTATTAC+AGG | - | chr1_4:17026494-17026513 | None:intergenic | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr1_4:17027016-17027035 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr1_4:17027015-17027034 | None:intergenic | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | + | chr1_4:17026629-17026648 | Msa0153580:intron | 25.0% |
| ! | GAAACCAAAAAGTAACTTAA+GGG | - | chr1_4:17026956-17026975 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr1_4:17026834-17026853 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr1_4:17026749-17026768 | Msa0153580:intron | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr1_4:17026834-17026853 | None:intergenic | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | + | chr1_4:17026749-17026768 | Msa0153580:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | - | chr1_4:17026749-17026768 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | + | chr1_4:17026834-17026853 | Msa0153580:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCCTTT+TGG | - | chr1_4:17026862-17026881 | None:intergenic | 25.0% |
| ! | GGAAACCAAAAAATAAGTTA+AGG | + | chr1_4:17026865-17026884 | Msa0153580:intron | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | - | chr1_4:17026629-17026648 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr1_4:17027015-17027034 | Msa0153580:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr1_4:17027016-17027035 | Msa0153580:intron | 25.0% |
| !!! | TTTTGGCTTAATTACTCTTT+TGG | - | chr1_4:17027043-17027062 | None:intergenic | 25.0% |
| !!! | TGAAAATGGGGTTTTTTTTT+TGG | - | chr1_4:17027060-17027079 | None:intergenic | 25.0% |
| ! | TTCTAAATGAGACATATACA+TGG | - | chr1_4:17027088-17027107 | None:intergenic | 25.0% |
| ! | CATAAATTGTTCTTCACAAA+TGG | + | chr1_4:17027196-17027215 | Msa0153580:intron | 25.0% |
| !! | TAATTTCTTTGATTTCATGG+AGG | + | chr1_4:17027243-17027262 | Msa0153580:intron | 25.0% |
| ! | TTGGTTTCATTCTATTCTAT+TGG | + | chr1_4:17027286-17027305 | Msa0153580:intron | 25.0% |
| ! | ATTCTATTGGACTTAAAATG+TGG | + | chr1_4:17027299-17027318 | Msa0153580:intron | 25.0% |
| ! | GTTGTATATTTGCTTCAATT+TGG | + | chr1_4:17027324-17027343 | Msa0153580:intron | 25.0% |
| ! | TAAAAACAAACAACCATGTA+CGG | + | chr1_4:17027439-17027458 | Msa0153580:intron | 25.0% |
| ! | AATGATAATAAATCCGTACA+TGG | - | chr1_4:17027455-17027474 | None:intergenic | 25.0% |
| ! | TACAAGAAATCTGAACTAAT+TGG | - | chr1_4:17027647-17027666 | None:intergenic | 25.0% |
| ! | CATTACTAATTGAAACTCAT+TGG | + | chr1_4:17027806-17027825 | Msa0153580:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1_4:17028291-17028310 | None:intergenic | 25.0% |
| ! | TATGTTTACATTACATGGAT+AGG | - | chr1_4:17028498-17028517 | None:intergenic | 25.0% |
| ! | AGTAGTATGTTTACATTACA+TGG | - | chr1_4:17028503-17028522 | None:intergenic | 25.0% |
| ! | TAGAGCAAAAGTTGTATATT+TGG | - | chr1_4:17028564-17028583 | None:intergenic | 25.0% |
| !! | ATTGATATGCTATTTGTACA+TGG | + | chr1_4:17028611-17028630 | Msa0153580:intron | 25.0% |
| ! | AACAAAGAAAACATTGTGTA+AGG | - | chr1_4:17028853-17028872 | None:intergenic | 25.0% |
| ! | GAATTCACATGACAAATTTA+AGG | + | chr1_4:17028900-17028919 | Msa0153580:CDS | 25.0% |
| !! | AAGAGGCATAATATATTTAG+CGG | + | chr1_4:17029056-17029075 | Msa0153580:CDS | 25.0% |
| ! | AAGGTTTCAATTATTCTAGA+TGG | + | chr1_4:17029258-17029277 | Msa0153580:CDS | 25.0% |
| TAAAACGCTAATCACATGAA+AGG | - | chr1_4:17026507-17026526 | None:intergenic | 30.0% | |
| CGAAACCAAAAAGTAACTTA+AGG | - | chr1_4:17026955-17026974 | None:intergenic | 30.0% | |
| !!! | GTTACTTTTTGGTTTCGTTT+TGG | + | chr1_4:17026689-17026708 | Msa0153580:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr1_4:17026738-17026757 | Msa0153580:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr1_4:17026738-17026757 | Msa0153580:intron | 30.0% |
| TCCCTCCAAAAAATAAGTTA+AGG | + | chr1_4:17026803-17026822 | Msa0153580:intron | 30.0% | |
| !!! | CCCTTAACTTATTTTTTGGA+GGG | - | chr1_4:17026807-17026826 | None:intergenic | 30.0% |
| CCCTCCAAAAAATAAGTTAA+GGG | + | chr1_4:17026804-17026823 | Msa0153580:intron | 30.0% | |
| !!! | TCCCTTAACTTATTTTTTGG+AGG | - | chr1_4:17026741-17026760 | None:intergenic | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr1_4:17026738-17026757 | None:intergenic | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr1_4:17026738-17026757 | None:intergenic | 30.0% |
| AAATAAGTTAAGGGACCAAA+AGG | + | chr1_4:17026813-17026832 | Msa0153580:intron | 30.0% | |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr1_4:17026738-17026757 | None:intergenic | 30.0% |
| !!! | GTTACTTTTTGGTTTCGTTT+TGG | - | chr1_4:17026689-17026708 | None:intergenic | 30.0% |
| !!! | TGGTCTCTTAAGTTACTTTT+TGG | - | chr1_4:17026963-17026982 | None:intergenic | 30.0% |
| ATACATGGTTGACTGAAAAT+GGG | - | chr1_4:17027073-17027092 | None:intergenic | 30.0% | |
| TATACATGGTTGACTGAAAA+TGG | - | chr1_4:17027074-17027093 | None:intergenic | 30.0% | |
| TTGATACGTAGTATATGCTT+TGG | + | chr1_4:17027706-17027725 | Msa0153580:intron | 30.0% | |
| GTCTGAGTTCAAAATGAATT+GGG | + | chr1_4:17027924-17027943 | Msa0153580:CDS | 30.0% | |
| TTAAACAGAGGATACCTATT+TGG | + | chr1_4:17028064-17028083 | Msa0153580:intron | 30.0% | |
| AAATACCTTGAAAATGCTCT+GGG | - | chr1_4:17028338-17028357 | None:intergenic | 30.0% | |
| ! | GATTAAGCAAATGATTTGTG+GGG | - | chr1_4:17028539-17028558 | None:intergenic | 30.0% |
| ! | GGATTAAGCAAATGATTTGT+GGG | - | chr1_4:17028540-17028559 | None:intergenic | 30.0% |
| TGGATTAAGCAAATGATTTG+TGG | - | chr1_4:17028541-17028560 | None:intergenic | 30.0% | |
| AGCAAAAGTTGTATATTTGG+TGG | - | chr1_4:17028561-17028580 | None:intergenic | 30.0% | |
| ACATATTCCATATCTTCTAC+TGG | - | chr1_4:17028718-17028737 | None:intergenic | 30.0% | |
| AGTAGAAGATATGGAATATG+TGG | + | chr1_4:17028717-17028736 | Msa0153580:intron | 30.0% | |
| GTAGAAGATATGGAATATGT+GGG | + | chr1_4:17028718-17028737 | Msa0153580:intron | 30.0% | |
| ! | TTTTGTGACATCATTAGACA+AGG | + | chr1_4:17028924-17028943 | Msa0153580:CDS | 30.0% |
| TATAATCCATACCTCGATTA+TGG | + | chr1_4:17029131-17029150 | Msa0153580:CDS | 30.0% | |
| ATAATCCATACCTCGATTAT+GGG | + | chr1_4:17029132-17029151 | Msa0153580:CDS | 30.0% | |
| AGAGAATGCAAAGTAAAGAT+TGG | + | chr1_4:17029185-17029204 | Msa0153580:CDS | 30.0% | |
| CAAAATCAATCATGTGTTCA+AGG | + | chr1_4:17029239-17029258 | Msa0153580:CDS | 30.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr1_4:17026618-17026637 | Msa0153580:intron | 35.0% | |
| !!! | TGGTCCCTTAAGTTACTTTT+TGG | + | chr1_4:17026678-17026697 | Msa0153580:intron | 35.0% |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr1_4:17026618-17026637 | None:intergenic | 35.0% | |
| TACATGGTTGACTGAAAATG+GGG | - | chr1_4:17027072-17027091 | None:intergenic | 35.0% | |
| ACGTTGCATACTTGCTTATT+TGG | + | chr1_4:17027267-17027286 | Msa0153580:intron | 35.0% | |
| GTGATTAAGCAAACTGTGTT+GGG | - | chr1_4:17027733-17027752 | None:intergenic | 35.0% | |
| AGTGATTAAGCAAACTGTGT+TGG | - | chr1_4:17027734-17027753 | None:intergenic | 35.0% | |
| AAGTCTAAGCGATATTGGAT+TGG | - | chr1_4:17027896-17027915 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGCGATAT+TGG | - | chr1_4:17027901-17027920 | None:intergenic | 35.0% | |
| ATATCGCTTAGACTTCCAAA+TGG | + | chr1_4:17027901-17027920 | Msa0153580:CDS | 35.0% | |
| TATCGCTTAGACTTCCAAAT+GGG | + | chr1_4:17027902-17027921 | Msa0153580:CDS | 35.0% | |
| ! | ATTTTGAACTCAGACCCATT+TGG | - | chr1_4:17027919-17027938 | None:intergenic | 35.0% |
| GGTCTGAGTTCAAAATGAAT+TGG | + | chr1_4:17027923-17027942 | Msa0153580:CDS | 35.0% | |
| AAAATGAATTGGGTACAACG+CGG | + | chr1_4:17027934-17027953 | Msa0153580:CDS | 35.0% | |
| TACATGAATGAGTTATTGCG+AGG | + | chr1_4:17028099-17028118 | Msa0153580:CDS | 35.0% | |
| ACATGAATGAGTTATTGCGA+GGG | + | chr1_4:17028100-17028119 | Msa0153580:CDS | 35.0% | |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | + | chr1_4:17028212-17028231 | Msa0153580:CDS | 35.0% |
| AAGGAACATGACTTGAAAGT+TGG | + | chr1_4:17028231-17028250 | Msa0153580:CDS | 35.0% | |
| GAAATACCTTGAAAATGCTC+TGG | - | chr1_4:17028339-17028358 | None:intergenic | 35.0% | |
| TCGGAATCAAAAGAAGAAGT+TGG | - | chr1_4:17028653-17028672 | None:intergenic | 35.0% | |
| ! | ATGGAATATGTGGGCAATTT+TGG | + | chr1_4:17028727-17028746 | Msa0153580:intron | 35.0% |
| TTTGTTCTTGTATATGCAGC+TGG | + | chr1_4:17029013-17029032 | Msa0153580:intron | 35.0% | |
| TATATTTAGCGGAGATTCAG+TGG | + | chr1_4:17029067-17029086 | Msa0153580:CDS | 35.0% | |
| ATTCAGTGGAGTTGAAAGTA+GGG | + | chr1_4:17029081-17029100 | Msa0153580:CDS | 35.0% | |
| ATGATGTCGAGTGTTCACAA+TGG | + | chr1_4:17026326-17026345 | Msa0153580:CDS | 40.0% | |
| TCAATGCAGCAAAGCATACA+TGG | - | chr1_4:17027409-17027428 | None:intergenic | 40.0% | |
| TAGTTCTCCACTTAAAGAGC+TGG | - | chr1_4:17027546-17027565 | None:intergenic | 40.0% | |
| ATTAGTGCTACGCATGACTT+TGG | + | chr1_4:17027666-17027685 | Msa0153580:intron | 40.0% | |
| TGTTCTTGCAGATGATTCCA+AGG | + | chr1_4:17027839-17027858 | Msa0153580:intron | 40.0% | |
| TGTCTCTCTACGAATTTCCT+TGG | - | chr1_4:17027859-17027878 | None:intergenic | 40.0% | |
| GGAAATTCGTAGAGAGACAT+TGG | + | chr1_4:17027860-17027879 | Msa0153580:CDS | 40.0% | |
| ! | ACGATGTTTGGCTTCAGAAT+TGG | + | chr1_4:17027959-17027978 | Msa0153580:CDS | 40.0% |
| ! | TTTGGCTTCAGAATTGGAAG+AGG | + | chr1_4:17027965-17027984 | Msa0153580:CDS | 40.0% |
| ! | AAGGCAACGATTAGAAGTGT+TGG | + | chr1_4:17028123-17028142 | Msa0153580:CDS | 40.0% |
| !! | AACGATTAGAAGTGTTGGTG+AGG | + | chr1_4:17028128-17028147 | Msa0153580:CDS | 40.0% |
| !! | CAAGAGCAGTTTTGTAATGC+AGG | + | chr1_4:17028188-17028207 | Msa0153580:CDS | 40.0% |
| !! | AGCAGTTTTGTAATGCAGGT+TGG | + | chr1_4:17028192-17028211 | Msa0153580:CDS | 40.0% |
| !!! | GTTTTGTAATGCAGGTTGGT+TGG | + | chr1_4:17028196-17028215 | Msa0153580:CDS | 40.0% |
| ! | GGGAATGGTTTCTTTGTTGT+TGG | - | chr1_4:17028318-17028337 | None:intergenic | 40.0% |
| !!! | CTCGTTGGTTTTCTGTATGT+CGG | - | chr1_4:17028672-17028691 | None:intergenic | 40.0% |
| !! | TATGTGGGCAATTTTGGAGA+AGG | + | chr1_4:17028733-17028752 | Msa0153580:intron | 40.0% |
| AAGAGCTGCACAAAAACACA+TGG | + | chr1_4:17028763-17028782 | Msa0153580:intron | 40.0% | |
| GCACAAAAACACATGGTCTA+AGG | + | chr1_4:17028770-17028789 | Msa0153580:intron | 40.0% | |
| ! | CACACAAAGCGCTATATACA+TGG | - | chr1_4:17028974-17028993 | None:intergenic | 40.0% |
| TTATGCCTCTTCAACAGACT+TGG | - | chr1_4:17029047-17029066 | None:intergenic | 40.0% | |
| GATTCAGTGGAGTTGAAAGT+AGG | + | chr1_4:17029080-17029099 | Msa0153580:CDS | 40.0% | |
| TTCAGTGGAGTTGAAAGTAG+GGG | + | chr1_4:17029082-17029101 | Msa0153580:CDS | 40.0% | |
| GATTATGGGTGGTTCACTAA+AGG | + | chr1_4:17029146-17029165 | Msa0153580:CDS | 40.0% | |
| TTGCATTCTCTCACGAATTC+TGG | - | chr1_4:17029176-17029195 | None:intergenic | 40.0% | |
| ACCACTAGTGCTCAATCACT+TGG | + | chr1_4:17027515-17027534 | Msa0153580:intron | 45.0% | |
| ACCAAGTGATTGAGCACTAG+TGG | - | chr1_4:17027519-17027538 | None:intergenic | 45.0% | |
| GGTCATACCAGCTCTTTAAG+TGG | + | chr1_4:17027536-17027555 | Msa0153580:intron | 45.0% | |
| GAATGAGTTATTGCGAGGGA+AGG | + | chr1_4:17028104-17028123 | Msa0153580:CDS | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | + | chr1_4:17028133-17028152 | Msa0153580:CDS | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | + | chr1_4:17028134-17028153 | Msa0153580:CDS | 45.0% |
| !! | CCTTGAAAATGCTCTGGGAA+TGG | - | chr1_4:17028333-17028352 | None:intergenic | 45.0% |
| !! | CCATTCCCAGAGCATTTTCA+AGG | + | chr1_4:17028330-17028349 | Msa0153580:CDS | 45.0% |
| ACAGAAAACCAACGAGTCCA+AGG | + | chr1_4:17028676-17028695 | Msa0153580:intron | 45.0% | |
| ! | CTGATTTTCCTTGGACTCGT+TGG | - | chr1_4:17028687-17028706 | None:intergenic | 45.0% |
| !!! | GCGTTGTCACTGATTTTCCT+TGG | - | chr1_4:17028696-17028715 | None:intergenic | 45.0% |
| GACAACGCCAGTAGAAGATA+TGG | + | chr1_4:17028708-17028727 | Msa0153580:intron | 45.0% | |
| TACTGCCAAGTCTGTTGAAG+AGG | + | chr1_4:17029039-17029058 | Msa0153580:CDS | 45.0% | |
| TGAAAGTAGGGGAAGGAACA+TGG | + | chr1_4:17029093-17029112 | Msa0153580:CDS | 45.0% | |
| ! | GGAAGGAACATGGTTTGTAG+AGG | + | chr1_4:17029103-17029122 | Msa0153580:CDS | 45.0% |
| ! | AGGAACATGGTTTGTAGAGG+TGG | + | chr1_4:17029106-17029125 | Msa0153580:CDS | 45.0% |
| ! | GGAACATGGTTTGTAGAGGT+GGG | + | chr1_4:17029107-17029126 | Msa0153580:CDS | 45.0% |
| ATCCATACCTCGATTATGGG+TGG | + | chr1_4:17029135-17029154 | Msa0153580:CDS | 45.0% | |
| AACCACCCATAATCGAGGTA+TGG | - | chr1_4:17029140-17029159 | None:intergenic | 45.0% | |
| TAGTGAACCACCCATAATCG+AGG | - | chr1_4:17029145-17029164 | None:intergenic | 45.0% | |
| ATGGGTGGTTCACTAAAGGT+TGG | + | chr1_4:17029150-17029169 | Msa0153580:CDS | 45.0% | |
| TCGAGTGTTCACAATGGACG+TGG | + | chr1_4:17026332-17026351 | Msa0153580:CDS | 50.0% | |
| GGTTAATGAGCGAATCGCTC+AGG | - | chr1_4:17027498-17027517 | None:intergenic | 50.0% | |
| TACAACGCGGTGACGATGTT+TGG | + | chr1_4:17027947-17027966 | Msa0153580:CDS | 50.0% | |
| GTGGAGTTGAAAGTAGGGGA+AGG | + | chr1_4:17029086-17029105 | Msa0153580:CDS | 50.0% | |
| TTTGCGCGCTCTCTCAGATG+TGG | + | chr1_4:17027988-17028007 | Msa0153580:intron | 55.0% | |
| GGACGTGGCAGTGAAGCTCA+TGG | + | chr1_4:17026347-17026366 | Msa0153580:CDS | 60.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | + | chr1_4:17028139-17028158 | Msa0153580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 17026320 | 17029295 | 17026320 | ID=Msa0153580;Name=Msa0153580 |
| chr1_4 | mRNA | 17026320 | 17029295 | 17026320 | ID=Msa0153580-mRNA-1;Parent=Msa0153580;Name=Msa0153580-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|1|1|5|0|279 |
| chr1_4 | exon | 17026320 | 17026421 | 17026320 | ID=Msa0153580-mRNA-1:exon:6514;Parent=Msa0153580-mRNA-1 |
| chr1_4 | exon | 17027850 | 17027986 | 17027850 | ID=Msa0153580-mRNA-1:exon:6515;Parent=Msa0153580-mRNA-1 |
| chr1_4 | exon | 17028074 | 17028351 | 17028074 | ID=Msa0153580-mRNA-1:exon:6516;Parent=Msa0153580-mRNA-1 |
| chr1_4 | exon | 17028887 | 17028945 | 17028887 | ID=Msa0153580-mRNA-1:exon:6517;Parent=Msa0153580-mRNA-1 |
| chr1_4 | exon | 17029032 | 17029295 | 17029032 | ID=Msa0153580-mRNA-1:exon:6518;Parent=Msa0153580-mRNA-1 |
| chr1_4 | CDS | 17026320 | 17026421 | 17026320 | ID=Msa0153580-mRNA-1:cds;Parent=Msa0153580-mRNA-1 |
| chr1_4 | CDS | 17027850 | 17027986 | 17027850 | ID=Msa0153580-mRNA-1:cds;Parent=Msa0153580-mRNA-1 |
| chr1_4 | CDS | 17028074 | 17028351 | 17028074 | ID=Msa0153580-mRNA-1:cds;Parent=Msa0153580-mRNA-1 |
| chr1_4 | CDS | 17028887 | 17028945 | 17028887 | ID=Msa0153580-mRNA-1:cds;Parent=Msa0153580-mRNA-1 |
| chr1_4 | CDS | 17029032 | 17029295 | 17029032 | ID=Msa0153580-mRNA-1:cds;Parent=Msa0153580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
