Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153610 | KEH26464.1 | 51.681 | 238 | 79 | 4 | 352 | 589 | 265 | 466 | 1.53e-62 | 225 |
| Msa0153610 | KEH26464.1 | 65.751 | 473 | 97 | 5 | 1 | 410 | 2 | 472 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153610 | A0A072U9K2 | 51.681 | 238 | 79 | 4 | 352 | 589 | 265 | 466 | 7.31e-63 | 225 |
| Msa0153610 | A0A072U9K2 | 65.751 | 473 | 97 | 5 | 1 | 410 | 2 | 472 | 0.0 | 601 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153610 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153610 | MtrunA17_Chr6g0476171 | 74.297 | 249 | 46 | 4 | 177 | 410 | 2 | 247 | 2.28e-121 | 360 |
| Msa0153610 | MtrunA17_Chr6g0476171 | 74.286 | 105 | 26 | 1 | 485 | 589 | 138 | 241 | 1.49e-47 | 167 |
| Msa0153610 | MtrunA17_Chr1g0163101 | 63.542 | 192 | 33 | 3 | 1 | 175 | 1 | 172 | 9.00e-74 | 234 |
| Msa0153610 | MtrunA17_Chr1g0163131 | 42.056 | 321 | 136 | 8 | 5 | 295 | 6 | 306 | 6.64e-65 | 216 |
| Msa0153610 | MtrunA17_Chr1g0163131 | 44.595 | 74 | 39 | 1 | 516 | 589 | 231 | 302 | 1.19e-12 | 69.3 |
| Msa0153610 | MtrunA17_Chr1g0163131 | 43.590 | 78 | 42 | 1 | 331 | 408 | 231 | 306 | 1.37e-12 | 68.9 |
| Msa0153610 | MtrunA17_Chr6g0476181 | 67.974 | 153 | 38 | 1 | 32 | 173 | 1 | 153 | 1.69e-64 | 209 |
| Msa0153610 | MtrunA17_Chr1g0163141 | 68.944 | 161 | 32 | 3 | 31 | 173 | 9 | 169 | 2.40e-62 | 204 |
| Msa0153610 | MtrunA17_Chr1g0163181 | 34.152 | 448 | 198 | 19 | 26 | 408 | 14 | 429 | 1.08e-58 | 203 |
| Msa0153610 | MtrunA17_Chr1g0162161 | 60.000 | 165 | 33 | 3 | 32 | 180 | 3 | 150 | 2.01e-55 | 185 |
| Msa0153610 | MtrunA17_Chr1g0163201 | 34.975 | 406 | 200 | 14 | 33 | 407 | 19 | 391 | 8.10e-55 | 191 |
| Msa0153610 | MtrunA17_Chr1g0163201 | 42.529 | 87 | 42 | 3 | 504 | 588 | 307 | 387 | 6.93e-12 | 67.8 |
| Msa0153610 | MtrunA17_Chr1g0163261 | 38.924 | 316 | 146 | 11 | 17 | 311 | 9 | 298 | 2.11e-53 | 185 |
| Msa0153610 | MtrunA17_Chr1g0163231 | 38.585 | 311 | 122 | 13 | 17 | 297 | 9 | 280 | 5.95e-46 | 164 |
| Msa0153610 | MtrunA17_Chr1g0163251 | 37.855 | 317 | 125 | 12 | 26 | 308 | 14 | 292 | 6.87e-45 | 164 |
| Msa0153610 | MtrunA17_Chr1g0163081 | 54.375 | 160 | 35 | 4 | 32 | 175 | 5 | 142 | 3.64e-44 | 154 |
| Msa0153610 | MtrunA17_Chr1g0163121 | 51.553 | 161 | 34 | 4 | 31 | 175 | 9 | 141 | 4.23e-41 | 146 |
| Msa0153610 | MtrunA17_Chr1g0163161 | 55.405 | 148 | 31 | 4 | 45 | 175 | 1 | 130 | 8.38e-41 | 145 |
| Msa0153610 | MtrunA17_Chr1g0171611 | 35.691 | 311 | 119 | 10 | 17 | 297 | 9 | 268 | 6.70e-37 | 139 |
| Msa0153610 | MtrunA17_Chr1g0163111 | 39.286 | 224 | 105 | 10 | 209 | 408 | 12 | 228 | 3.31e-35 | 132 |
| Msa0153610 | MtrunA17_Chr1g0163111 | 40.964 | 83 | 45 | 3 | 507 | 588 | 144 | 223 | 7.43e-14 | 71.6 |
| Msa0153610 | MtrunA17_Chr1g0163151 | 39.070 | 215 | 108 | 7 | 209 | 408 | 15 | 221 | 1.07e-33 | 128 |
| Msa0153610 | MtrunA17_Chr1g0163151 | 40.000 | 90 | 46 | 3 | 501 | 588 | 133 | 216 | 3.63e-13 | 69.3 |
| Msa0153610 | MtrunA17_Chr1g0162151 | 35.887 | 248 | 112 | 9 | 187 | 419 | 3 | 218 | 5.65e-30 | 117 |
| Msa0153610 | MtrunA17_Chr1g0163091 | 41.379 | 174 | 74 | 8 | 187 | 344 | 3 | 164 | 1.10e-25 | 103 |
| Msa0153610 | MtrunA17_Chr3g0131891 | 26.911 | 327 | 166 | 13 | 11 | 298 | 13 | 305 | 2.27e-22 | 98.6 |
| Msa0153610 | MtrunA17_Chr1g0208771 | 26.452 | 310 | 184 | 11 | 33 | 312 | 13 | 308 | 2.35e-22 | 100 |
| Msa0153610 | MtrunA17_Chr8g0390841 | 26.606 | 327 | 196 | 12 | 15 | 312 | 37 | 348 | 4.54e-21 | 97.1 |
| Msa0153610 | MtrunA17_Chr4g0067431 | 27.381 | 336 | 184 | 15 | 12 | 308 | 10 | 324 | 8.79e-21 | 94.0 |
| Msa0153610 | MtrunA17_Chr1g0163241 | 40.141 | 142 | 63 | 6 | 33 | 154 | 23 | 162 | 1.39e-20 | 89.4 |
| Msa0153610 | MtrunA17_Chr7g0233561 | 26.061 | 330 | 177 | 10 | 10 | 298 | 11 | 314 | 4.83e-20 | 91.7 |
| Msa0153610 | MtrunA17_Chr1g0163221 | 24.069 | 403 | 231 | 12 | 11 | 397 | 5 | 348 | 8.10e-20 | 91.7 |
| Msa0153610 | MtrunA17_Chr1g0163191 | 41.667 | 108 | 46 | 3 | 26 | 116 | 14 | 121 | 1.06e-19 | 86.7 |
| Msa0153610 | MtrunA17_Chr7g0233521 | 27.517 | 298 | 152 | 9 | 32 | 298 | 1 | 265 | 7.48e-18 | 84.3 |
| Msa0153610 | MtrunA17_Chr1g0163071 | 25.987 | 304 | 179 | 12 | 32 | 301 | 1 | 292 | 7.56e-18 | 84.7 |
| Msa0153610 | MtrunA17_Chr7g0233541 | 27.759 | 299 | 167 | 10 | 32 | 298 | 1 | 282 | 7.89e-18 | 84.7 |
| Msa0153610 | MtrunA17_Chr7g0233531 | 26.333 | 300 | 153 | 11 | 32 | 298 | 1 | 265 | 6.44e-16 | 78.6 |
| Msa0153610 | MtrunA17_Chr5g0419201 | 29.353 | 201 | 101 | 8 | 2 | 175 | 5 | 191 | 8.97e-16 | 76.3 |
| Msa0153610 | MtrunA17_Chr3g0103181 | 24.383 | 324 | 164 | 13 | 7 | 295 | 2 | 279 | 2.32e-15 | 77.0 |
| Msa0153610 | MtrunA17_Chr6g0467351 | 42.045 | 88 | 47 | 3 | 14 | 97 | 12 | 99 | 3.85e-14 | 72.4 |
| Msa0153610 | MtrunA17_Chr7g0233571 | 28.125 | 224 | 132 | 7 | 16 | 225 | 9 | 217 | 6.14e-14 | 71.6 |
| Msa0153610 | MtrunA17_Chr3g0103151 | 31.690 | 142 | 81 | 4 | 15 | 142 | 10 | 149 | 1.34e-13 | 68.9 |
| Msa0153610 | MtrunA17_Chr3g0103171 | 22.559 | 297 | 159 | 9 | 33 | 295 | 6 | 265 | 1.44e-13 | 71.2 |
| Msa0153610 | MtrunA17_Chr1g0163061 | 42.045 | 88 | 47 | 2 | 14 | 97 | 12 | 99 | 3.71e-12 | 67.4 |
| Msa0153610 | MtrunA17_Chr1g0154111 | 22.779 | 439 | 248 | 14 | 15 | 394 | 24 | 430 | 4.15e-12 | 69.3 |
| Msa0153610 | MtrunA17_Chr1g0154131 | 24.834 | 302 | 166 | 12 | 15 | 282 | 182 | 456 | 4.44e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAATATGTGAGCAATTT+TGG | 0.126491 | 1_4:+17087095 | Msa0153610:CDS |
| CGATAATTTGAGAGTGAAAT+TGG | 0.170501 | 1_4:-17086897 | None:intergenic |
| GATATTAATTGAAAGTAGTT+TGG | 0.268883 | 1_4:-17088360 | None:intergenic |
| CATTCAACTTTGTGAATTGC+AGG | 0.285867 | 1_4:+17082952 | Msa0153610:CDS |
| GGGCATGGTTCCTTTGTGGC+TGG | 0.290615 | 1_4:-17085254 | None:intergenic |
| TATATTGGATGATAGTAGTT+TGG | 0.295324 | 1_4:+17083997 | Msa0153610:intron |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1_4:-17085496 | None:intergenic |
| TTGAATTTGTCATGTAAATT+CGG | 0.311912 | 1_4:-17087264 | None:intergenic |
| TATAATGAGCATCTCGACTA+TGG | 0.312686 | 1_4:+17087497 | Msa0153610:CDS |
| AAAAGACATGATATATTTAG+TGG | 0.333899 | 1_4:+17087422 | Msa0153610:CDS |
| TATATTTAGTGGAAATTTAG+TGG | 0.337369 | 1_4:+17085666 | Msa0153610:CDS |
| AAGAGACATAATATATTTAG+TGG | 0.341164 | 1_4:+17085655 | Msa0153610:CDS |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1_4:+17083861 | Msa0153610:CDS |
| ATTCACAAAGTTGAATGGTT+TGG | 0.365673 | 1_4:-17082946 | None:intergenic |
| TACAACGCGGTGACGATGTT+TGG | 0.370214 | 1_4:+17083885 | Msa0153610:CDS |
| TTATAACCTTCAATGTGATA+TGG | 0.376198 | 1_4:-17084620 | None:intergenic |
| CTCTGGGCATGGTTCCTTTG+TGG | 0.384680 | 1_4:-17085258 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_4:-17083964 | None:intergenic |
| CTGCAATTCACAAAGTTGAA+TGG | 0.392583 | 1_4:-17082951 | None:intergenic |
| GACGATGCCAGAAGAAGATA+TGG | 0.392753 | 1_4:+17087076 | Msa0153610:CDS |
| TGATATATTTAGTGGAAATT+CGG | 0.394530 | 1_4:+17087430 | Msa0153610:CDS |
| ACATATTCCATATCTTCTTC+TGG | 0.395565 | 1_4:-17087083 | None:intergenic |
| GGCATGGTTCCTTTGTGGCT+GGG | 0.402651 | 1_4:-17085253 | None:intergenic |
| ACGATGTTTGGCTTCAGAAC+TGG | 0.404512 | 1_4:+17083897 | Msa0153610:CDS |
| CATTGAAGGTTATAATAGAT+TGG | 0.414338 | 1_4:+17084628 | Msa0153610:CDS |
| CGTGCAAAATCATGTATTCA+AGG | 0.415158 | 1_4:+17085834 | Msa0153610:CDS |
| GAAATACCTTGAAACTGCTC+TGG | 0.423422 | 1_4:-17085275 | None:intergenic |
| TATTCTTTCGAAAACCATCT+AGG | 0.429204 | 1_4:-17085017 | None:intergenic |
| AGTGAAATTGGGATTCTCAT+TGG | 0.431716 | 1_4:-17086885 | None:intergenic |
| CTTCCTTCATTACGATAGCT+TGG | 0.436747 | 1_4:-17088391 | None:intergenic |
| ATAGTAATTGTGAATGAAAG+TGG | 0.438268 | 1_4:-17085227 | None:intergenic |
| TTCCTTCATTACGATAGCTT+GGG | 0.442937 | 1_4:-17088390 | None:intergenic |
| TATGATCAACATCTCGATCA+TGG | 0.447909 | 1_4:+17085730 | Msa0153610:CDS |
| CTCAAACAAGCAAGTGTCTC+CGG | 0.453496 | 1_4:-17087570 | None:intergenic |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_4:+17085072 | Msa0153610:CDS |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1_4:+17083862 | Msa0153610:CDS |
| ACATCGCTTACACTTCCAAA+TGG | 0.455547 | 1_4:+17083839 | Msa0153610:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1_4:+17085498 | Msa0153610:CDS |
| GAATTTACATGACAAATTCA+AGG | 0.456040 | 1_4:+17087266 | Msa0153610:CDS |
| TTATCGCCATATCACATTGA+AGG | 0.463256 | 1_4:+17084614 | Msa0153610:CDS |
| CTAATAGAAACTGTGGAGGC+CGG | 0.465574 | 1_4:+17084495 | Msa0153610:CDS |
| GATAATTTGAGAGTGAAATT+GGG | 0.465805 | 1_4:-17086896 | None:intergenic |
| AGAGATCGCAAAGTGAAGAT+TGG | 0.467048 | 1_4:+17085784 | Msa0153610:CDS |
| AAGGAACATGACTTGAAAGT+TGG | 0.470859 | 1_4:+17085170 | Msa0153610:CDS |
| TGTCTCTCTACGAATTTCCT+TGG | 0.471061 | 1_4:-17083794 | None:intergenic |
| TTTGGAAGTGTAAGCGATGT+TGG | 0.474087 | 1_4:-17083836 | None:intergenic |
| TAATAGAAACTGTGGAGGCC+GGG | 0.483673 | 1_4:+17084496 | Msa0153610:CDS |
| TTCCCAAGCTATCGTAATGA+AGG | 0.489760 | 1_4:+17088388 | Msa0153610:CDS |
| TCAATGTCAAGTGTTCACTA+TGG | 0.491973 | 1_4:+17082890 | None:intergenic |
| TGTCTCTTCAACAGCTCACT+TGG | 0.493789 | 1_4:-17085640 | None:intergenic |
| TGAAACAGATAATACCTAGA+TGG | 0.494737 | 1_4:+17085003 | Msa0153610:intron |
| GTGGAGTTGAAAGCAGAAGA+AGG | 0.502821 | 1_4:+17085685 | Msa0153610:CDS |
| AGAGGAAGAAACATGGTTTG+TGG | 0.504030 | 1_4:+17087466 | Msa0153610:CDS |
| TCACAAATTATCATCCCAAT+GGG | 0.508213 | 1_4:+17084570 | Msa0153610:CDS |
| TTGCCAATGTTTGTCCCTTG+AGG | 0.510253 | 1_4:-17084181 | None:intergenic |
| TTCACAAATTATCATCCCAA+TGG | 0.514529 | 1_4:+17084569 | Msa0153610:CDS |
| CATCGCTTACACTTCCAAAT+GGG | 0.515173 | 1_4:+17083840 | Msa0153610:CDS |
| CCATGCCCAGAGCAGTTTCA+AGG | 0.516067 | 1_4:+17085269 | Msa0153610:CDS |
| TGGACGTGGGAGTGAAGCTA+AGG | 0.519368 | 1_4:+17082910 | Msa0153610:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_4:+17087601 | Msa0153610:CDS |
| GGAAATTCGTAGAGAGACAT+TGG | 0.530097 | 1_4:+17083798 | Msa0153610:CDS |
| TTTGGCTTCAGAACTGGAAG+AGG | 0.532764 | 1_4:+17083903 | Msa0153610:CDS |
| CCTTGAAACTGCTCTGGGCA+TGG | 0.538312 | 1_4:-17085269 | None:intergenic |
| CAATGATGAACAAGAAGCTA+AGG | 0.539148 | 1_4:+17084045 | Msa0153610:CDS |
| GATCATGGGTGGTTCACTAA+AGG | 0.540814 | 1_4:+17085745 | Msa0153610:CDS |
| AGAAGAAGGAACATGGTTTG+TGG | 0.547977 | 1_4:+17085699 | Msa0153610:CDS |
| GATAATTTGACTGTGAAACT+AGG | 0.548697 | 1_4:-17084596 | None:intergenic |
| ATTTCTTAGCTTTCTTACCC+CGG | 0.551754 | 1_4:-17084514 | None:intergenic |
| AATAGAAACTGTGGAGGCCG+GGG | 0.552110 | 1_4:+17084497 | Msa0153610:CDS |
| GACTATGGGTGGTTCACTGA+AGG | 0.552574 | 1_4:+17087512 | Msa0153610:CDS |
| ACTAGTGCTGCTACACCTCA+AGG | 0.555707 | 1_4:+17084166 | Msa0153610:CDS |
| ATGATCAACATCTCGATCAT+GGG | 0.558223 | 1_4:+17085731 | Msa0153610:CDS |
| ATGGGTGGTTCACTGAAGGC+TGG | 0.558556 | 1_4:+17087516 | Msa0153610:CDS |
| TGTTCTTGCAGATGATTCCA+AGG | 0.559130 | 1_4:+17083777 | Msa0153610:intron |
| TTCGGTGGAGTTGAAAGTAG+AGG | 0.559890 | 1_4:+17087448 | Msa0153610:CDS |
| TATATTTAGTGGAAATTCGG+TGG | 0.560367 | 1_4:+17087433 | Msa0153610:CDS |
| GTGAAACTAGGACTCCCATT+GGG | 0.561306 | 1_4:-17084584 | None:intergenic |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_4:+17085073 | Msa0153610:CDS |
| ATAATGAGCATCTCGACTAT+GGG | 0.562604 | 1_4:+17087498 | Msa0153610:CDS |
| AGAGATTGCAAAGTAAAGAC+CGG | 0.565440 | 1_4:+17087551 | Msa0153610:CDS |
| TCAAGTGTTCACTATGGACG+TGG | 0.567496 | 1_4:+17082896 | Msa0153610:CDS |
| GCAGAGGCTAATAGAATCAG+AGG | 0.568365 | 1_4:+17086788 | Msa0153610:intron |
| CTCACCAACACTTCTAATTG+TGG | 0.571224 | 1_4:-17085066 | None:intergenic |
| AAGGCCACAATTAGAAGTGT+TGG | 0.571434 | 1_4:+17085062 | Msa0153610:CDS |
| AATAGAATCAGAGGAGGCAG+TGG | 0.572767 | 1_4:+17086797 | Msa0153610:CDS |
| ACACCTCAAGGGACAAACAT+TGG | 0.575666 | 1_4:+17084178 | Msa0153610:CDS |
| ATGAAGGAAGGTGATGAAGA+AGG | 0.581850 | 1_4:+17088404 | Msa0153610:CDS |
| TTTGCGCGCTCTCTCAGATG+TGG | 0.586381 | 1_4:+17083926 | Msa0153610:CDS |
| ATGGGTGGTTCACTAAAGGT+TGG | 0.588689 | 1_4:+17085749 | Msa0153610:CDS |
| AAATACCTTGAAACTGCTCT+GGG | 0.589681 | 1_4:-17085274 | None:intergenic |
| TGAAAGTAGAGGAAGAAACA+TGG | 0.594057 | 1_4:+17087459 | Msa0153610:CDS |
| TGTGAAACTAGGACTCCCAT+TGG | 0.594223 | 1_4:-17084585 | None:intergenic |
| CACAATTAGAAGTGTTGGTG+AGG | 0.602624 | 1_4:+17085067 | Msa0153610:CDS |
| TGAAAGCAGAAGAAGGAACA+TGG | 0.607559 | 1_4:+17085692 | Msa0153610:CDS |
| CAAGCTATCGTAATGAAGGA+AGG | 0.620753 | 1_4:+17088392 | Msa0153610:CDS |
| ATCAACATCTCGATCATGGG+TGG | 0.629808 | 1_4:+17085734 | Msa0153610:CDS |
| GGACGTGGGAGTGAAGCTAA+GGG | 0.640577 | 1_4:+17082911 | Msa0153610:CDS |
| GCAGAGGCTAATAGAAACTG+TGG | 0.644824 | 1_4:+17084488 | Msa0153610:CDS |
| TACTATTATCCCAGCCACAA+AGG | 0.646969 | 1_4:+17085244 | Msa0153610:CDS |
| GAATGAGTTATTGCAACAGA+AGG | 0.647927 | 1_4:+17085043 | Msa0153610:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.648324 | 1_4:+17085078 | Msa0153610:CDS |
| ATGAGCATCTCGACTATGGG+TGG | 0.648558 | 1_4:+17087501 | Msa0153610:CDS |
| GGAAGAAACATGGTTTGTGG+AGG | 0.653505 | 1_4:+17087469 | Msa0153610:CDS |
| CTAGTGCTGCTACACCTCAA+GGG | 0.659036 | 1_4:+17084167 | Msa0153610:CDS |
| AGAAGGAACATGGTTTGTGG+AGG | 0.660933 | 1_4:+17085702 | Msa0153610:CDS |
| GAGGCTAATAGAATCAGAGG+AGG | 0.693921 | 1_4:+17086791 | Msa0153610:intron |
| GAGGCTAATAGAAACTGTGG+AGG | 0.696340 | 1_4:+17084491 | Msa0153610:CDS |
| CAAGTGTTCACTATGGACGT+GGG | 0.700697 | 1_4:+17082897 | Msa0153610:CDS |
| AAAATGAATTGGGTACAACG+CGG | 0.771281 | 1_4:+17083872 | Msa0153610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATTCAATAATTAAATT+GGG | - | chr1_4:17083114-17083133 | None:intergenic | 10.0% |
| !! | AGTTTATTCAATAATTAAAT+TGG | - | chr1_4:17083115-17083134 | None:intergenic | 10.0% |
| !!! | TTTAGGTATATTTTAATTAT+TGG | + | chr1_4:17084910-17084929 | Msa0153610:intron | 10.0% |
| !!! | TTTACTAAAAAAAAAAGTAT+AGG | - | chr1_4:17086964-17086983 | None:intergenic | 10.0% |
| !! | TTATTAGAGATATTAATTAA+AGG | - | chr1_4:17088124-17088143 | None:intergenic | 10.0% |
| !!! | TATTGAATAAACTTTGTTAT+CGG | + | chr1_4:17083122-17083141 | Msa0153610:intron | 15.0% |
| !!! | AGTTTTTGAAATTAAATTCA+TGG | + | chr1_4:17083495-17083514 | Msa0153610:intron | 15.0% |
| !!! | AATTATTTTCAGCATTTAAA+AGG | - | chr1_4:17086757-17086776 | None:intergenic | 15.0% |
| !!! | TAATTTAATTTTTTTTGCAG+AGG | + | chr1_4:17086772-17086791 | Msa0153610:intron | 15.0% |
| !!! | TTATAATTGCTTTGATTTGA+TGG | + | chr1_4:17083192-17083211 | Msa0153610:intron | 20.0% |
| !!! | CAAAATTTTAGGTAGAAATT+GGG | - | chr1_4:17083278-17083297 | None:intergenic | 20.0% |
| !!! | TCAAAATTTTAGGTAGAAAT+TGG | - | chr1_4:17083279-17083298 | None:intergenic | 20.0% |
| !!! | GTTTTTAGTGTCAAAATTTT+AGG | - | chr1_4:17083289-17083308 | None:intergenic | 20.0% |
| !! | TACGGATTTATTATCATTAA+TGG | + | chr1_4:17083320-17083339 | Msa0153610:intron | 20.0% |
| !!! | TTTTGAAATTAAATTCATGG+AGG | + | chr1_4:17083498-17083517 | Msa0153610:intron | 20.0% |
| !!! | AGATTTTCATGTCATTATAT+TGG | + | chr1_4:17083982-17084001 | Msa0153610:intron | 20.0% |
| !! | ACATTGACAAAAATGTTATT+AGG | + | chr1_4:17084258-17084277 | Msa0153610:intron | 20.0% |
| !! | AATTTGTATGCATTAAAAAG+TGG | - | chr1_4:17084292-17084311 | None:intergenic | 20.0% |
| !! | TAAAAAATACGTAAATACAG+CGG | - | chr1_4:17084351-17084370 | None:intergenic | 20.0% |
| !! | TATTTACAAGAGAAACATTT+GGG | - | chr1_4:17084759-17084778 | None:intergenic | 20.0% |
| !!! | ATCATGTGTAACAAATTTTA+AGG | + | chr1_4:17085357-17085376 | Msa0153610:intron | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | - | chr1_4:17085499-17085518 | None:intergenic | 20.0% |
| !! | AAGAGACATAATATATTTAG+TGG | + | chr1_4:17085655-17085674 | Msa0153610:CDS | 20.0% |
| !! | TATATTTAGTGGAAATTTAG+TGG | + | chr1_4:17085666-17085685 | Msa0153610:CDS | 20.0% |
| !! | AAATACACAAAAAGTAAAGA+TGG | + | chr1_4:17086833-17086852 | Msa0153610:CDS | 20.0% |
| !! | AATACACAAAAAGTAAAGAT+GGG | + | chr1_4:17086834-17086853 | Msa0153610:CDS | 20.0% |
| !! | AGTAGTATGTTTACATTATT+TGG | - | chr1_4:17086991-17087010 | None:intergenic | 20.0% |
| !! | TTGAATTTGTCATGTAAATT+CGG | - | chr1_4:17085499-17085518 | None:intergenic | 20.0% |
| !! | AAAAGACATGATATATTTAG+TGG | + | chr1_4:17087422-17087441 | Msa0153610:CDS | 20.0% |
| !! | TGATATATTTAGTGGAAATT+CGG | + | chr1_4:17087430-17087449 | Msa0153610:CDS | 20.0% |
| !!! | AAAGAAAGCATCTTAAAAAA+AGG | - | chr1_4:17088022-17088041 | None:intergenic | 20.0% |
| !! | TAGTAAATTTACAAATAGCT+CGG | - | chr1_4:17088079-17088098 | None:intergenic | 20.0% |
| !! | GATATTAATTGAAAGTAGTT+TGG | - | chr1_4:17088363-17088382 | None:intergenic | 20.0% |
| ! | AATCGAAAGAATGAATGAAA+TGG | - | chr1_4:17083021-17083040 | None:intergenic | 25.0% |
| ! | ATTGGGTCAATGATTAAAAT+GGG | - | chr1_4:17083097-17083116 | None:intergenic | 25.0% |
| ! | AATTGGGTCAATGATTAAAA+TGG | - | chr1_4:17083098-17083117 | None:intergenic | 25.0% |
| ! | AATGAATACGAAGATTTGAA+TGG | + | chr1_4:17083149-17083168 | Msa0153610:intron | 25.0% |
| ! | AATGATAATAAATCCGTACA+TGG | - | chr1_4:17083318-17083337 | None:intergenic | 25.0% |
| ! | CATTAATGGAATTCATCATT+TGG | + | chr1_4:17083334-17083353 | Msa0153610:intron | 25.0% |
| !! | TACAAGAAATCTGAAGTAAT+TGG | - | chr1_4:17083574-17083593 | None:intergenic | 25.0% |
| ! | TGTTTGATACATATATGCTT+TGG | + | chr1_4:17083630-17083649 | Msa0153610:intron | 25.0% |
| ! | CATTTCTAATTGAAACTCAT+TGG | + | chr1_4:17083744-17083763 | Msa0153610:intron | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | + | chr1_4:17083953-17083972 | Msa0153610:CDS | 25.0% |
| ! | TATATTGGATGATAGTAGTT+TGG | + | chr1_4:17083997-17084016 | Msa0153610:intron | 25.0% |
| !! | TTGATTTTCTTTTTCTTGAG+GGG | - | chr1_4:17084130-17084149 | None:intergenic | 25.0% |
| !!! | GTTGATTTTCTTTTTCTTGA+GGG | - | chr1_4:17084131-17084150 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTCTTTTTCTTG+AGG | - | chr1_4:17084132-17084151 | None:intergenic | 25.0% |
| ! | AAAAAATACGTAAATACAGC+GGG | - | chr1_4:17084350-17084369 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | + | chr1_4:17084472-17084491 | Msa0153610:intron | 25.0% |
| ! | AATGCACAAAAACTAAAGAT+AGG | + | chr1_4:17084534-17084553 | Msa0153610:CDS | 25.0% |
| ! | TTATAACCTTCAATGTGATA+TGG | - | chr1_4:17084623-17084642 | None:intergenic | 25.0% |
| ! | CATTGAAGGTTATAATAGAT+TGG | + | chr1_4:17084628-17084647 | Msa0153610:CDS | 25.0% |
| ! | ATTTACAAGAGAAACATTTG+GGG | - | chr1_4:17084758-17084777 | None:intergenic | 25.0% |
| ! | CTATTTACAAGAGAAACATT+TGG | - | chr1_4:17084760-17084779 | None:intergenic | 25.0% |
| ! | ACTAACAGAAAACATATTCA+AGG | + | chr1_4:17084797-17084816 | Msa0153610:intron | 25.0% |
| ! | AAGTAACAATAGAGACATTT+AGG | + | chr1_4:17084893-17084912 | Msa0153610:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | - | chr1_4:17085230-17085249 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | + | chr1_4:17085498-17085517 | Msa0153610:CDS | 25.0% |
| ! | GATTGATTATCAAAATCATG+TGG | + | chr1_4:17086049-17086068 | Msa0153610:intron | 25.0% |
| ! | TAAGATAATTTCACTGTCAT+TGG | - | chr1_4:17086502-17086521 | None:intergenic | 25.0% |
| ! | GATAATTTGAGAGTGAAATT+GGG | - | chr1_4:17086899-17086918 | None:intergenic | 25.0% |
| ! | AGAACAAAGAAAACAGTTTA+AGG | - | chr1_4:17087221-17087240 | None:intergenic | 25.0% |
| ! | GAATTTACATGACAAATTCA+AGG | + | chr1_4:17085498-17085517 | Msa0153610:CDS | 25.0% |
| !! | TTTTGTAACATCATTAGACA+AGG | + | chr1_4:17087290-17087309 | Msa0153610:CDS | 25.0% |
| ! | TTTGTTCTTATATATGCAGT+TGG | + | chr1_4:17087376-17087395 | Msa0153610:intron | 25.0% |
| !!! | TTTGTGTTTTGTCACTTTAA+GGG | + | chr1_4:17087646-17087665 | Msa0153610:intron | 25.0% |
| ! | TATTCTTTAATTGTGAGACT+TGG | + | chr1_4:17087688-17087707 | Msa0153610:intron | 25.0% |
| ATTCACAAAGTTGAATGGTT+TGG | - | chr1_4:17082949-17082968 | None:intergenic | 30.0% | |
| !! | TAATTGCTTTGATTTGATGG+AGG | + | chr1_4:17083195-17083214 | Msa0153610:intron | 30.0% |
| !!! | ATCTGGTTTTCTTAGGTATT+TGG | + | chr1_4:17083236-17083255 | Msa0153610:intron | 30.0% |
| TAAAAACAAACAGCCATGTA+CGG | + | chr1_4:17083302-17083321 | Msa0153610:intron | 30.0% | |
| TAATGGAATTCATCATTTGG+TGG | + | chr1_4:17083337-17083356 | Msa0153610:intron | 30.0% | |
| AATCATACCAACTCTTTAAG+TGG | + | chr1_4:17083384-17083403 | Msa0153610:intron | 30.0% | |
| ! | CATGATCAAAACAGTATTGA+GGG | - | chr1_4:17083447-17083466 | None:intergenic | 30.0% |
| GTCTGAGTTCAAAATGAATT+GGG | + | chr1_4:17083862-17083881 | Msa0153610:CDS | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | + | chr1_4:17083956-17083975 | Msa0153610:CDS | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | + | chr1_4:17083957-17083976 | Msa0153610:CDS | 30.0% |
| ! | TGGGTATTTTCATGATCATT+CGG | - | chr1_4:17084103-17084122 | None:intergenic | 30.0% |
| ! | GTTCACGTCTTGATTTTTAA+TGG | - | chr1_4:17084406-17084425 | None:intergenic | 30.0% |
| TTCACAAATTATCATCCCAA+TGG | + | chr1_4:17084569-17084588 | Msa0153610:CDS | 30.0% | |
| TCACAAATTATCATCCCAAT+GGG | + | chr1_4:17084570-17084589 | Msa0153610:CDS | 30.0% | |
| GATAATTTGACTGTGAAACT+AGG | - | chr1_4:17084599-17084618 | None:intergenic | 30.0% | |
| !! | AGAGGCTTTCATTTTTCTAT+AGG | + | chr1_4:17084703-17084722 | Msa0153610:intron | 30.0% |
| ATAAGTATATGTAACGTGCA+TGG | - | chr1_4:17084944-17084963 | None:intergenic | 30.0% | |
| ATCTAGGTATTATCTGTTTC+AGG | - | chr1_4:17085004-17085023 | None:intergenic | 30.0% | |
| TGAAACAGATAATACCTAGA+TGG | + | chr1_4:17085003-17085022 | Msa0153610:intron | 30.0% | |
| TATTCTTTCGAAAACCATCT+AGG | - | chr1_4:17085020-17085039 | None:intergenic | 30.0% | |
| GTAGTATGTTTACATTGACA+AGG | - | chr1_4:17085393-17085412 | None:intergenic | 30.0% | |
| ! | TTTTGTAACATCATTCGACA+AGG | + | chr1_4:17085522-17085541 | Msa0153610:CDS | 30.0% |
| TTTGTTCTTATATATGCAGC+TGG | + | chr1_4:17085609-17085628 | Msa0153610:intron | 30.0% | |
| CAAACATTCTTCTAAACATC+TGG | - | chr1_4:17085871-17085890 | None:intergenic | 30.0% | |
| ATTATCAAAATCATGTGGTC+AGG | + | chr1_4:17086054-17086073 | Msa0153610:intron | 30.0% | |
| TTATCAAAATCATGTGGTCA+GGG | + | chr1_4:17086055-17086074 | Msa0153610:intron | 30.0% | |
| ATGGAAAATTAGCATAGAGT+GGG | - | chr1_4:17086219-17086238 | None:intergenic | 30.0% | |
| !! | TTGGTTTTCTTTTTCTTCAG+GGG | - | chr1_4:17086528-17086547 | None:intergenic | 30.0% |
| !!! | GTTGGTTTTCTTTTTCTTCA+GGG | - | chr1_4:17086529-17086548 | None:intergenic | 30.0% |
| !!! | TGTTGGTTTTCTTTTTCTTC+AGG | - | chr1_4:17086530-17086549 | None:intergenic | 30.0% |
| CGATAATTTGAGAGTGAAAT+TGG | - | chr1_4:17086900-17086919 | None:intergenic | 30.0% | |
| GGAAGGTGATAGATTAAAAT+TGG | + | chr1_4:17086931-17086950 | Msa0153610:intron | 30.0% | |
| ACATATTCCATATCTTCTTC+TGG | - | chr1_4:17087086-17087105 | None:intergenic | 30.0% | |
| ! | ATGGAATATGTGAGCAATTT+TGG | + | chr1_4:17087095-17087114 | Msa0153610:CDS | 30.0% |
| TATATTTAGTGGAAATTCGG+TGG | + | chr1_4:17087433-17087452 | Msa0153610:CDS | 30.0% | |
| !!! | GTTTGTGTTTTGTCACTTTA+AGG | + | chr1_4:17087645-17087664 | Msa0153610:intron | 30.0% |
| !!! | TTGTGTTTTGTCACTTTAAG+GGG | + | chr1_4:17087647-17087666 | Msa0153610:intron | 30.0% |
| ! | TTCTTTTACTTCAACCATGA+GGG | - | chr1_4:17087736-17087755 | None:intergenic | 30.0% |
| ! | TTTCTTTTACTTCAACCATG+AGG | - | chr1_4:17087737-17087756 | None:intergenic | 30.0% |
| TGGTTGAAGTAAAAGAAAAC+AGG | + | chr1_4:17087739-17087758 | Msa0153610:intron | 30.0% | |
| AAGAAAACAGGAAATTCAGA+AGG | + | chr1_4:17087751-17087770 | Msa0153610:intron | 30.0% | |
| TGCTTTACTGTTTAATGTTG+TGG | - | chr1_4:17087872-17087891 | None:intergenic | 30.0% | |
| ! | TTTTTGCACTGAATCATCTT+AGG | - | chr1_4:17087897-17087916 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTGTTGTCTAGCT+AGG | + | chr1_4:17087995-17088014 | Msa0153610:intron | 30.0% |
| ATATGCACTGTTTCAATTCA+TGG | - | chr1_4:17088148-17088167 | None:intergenic | 30.0% | |
| ! | AATACTCGAACTAGTTTGAA+GGG | + | chr1_4:17088186-17088205 | Msa0153610:intron | 30.0% |
| CTGCAATTCACAAAGTTGAA+TGG | - | chr1_4:17082954-17082973 | None:intergenic | 35.0% | |
| CATTCAACTTTGTGAATTGC+AGG | + | chr1_4:17082952-17082971 | Msa0153610:CDS | 35.0% | |
| ATGTTGCATACTTGCTTATC+TGG | + | chr1_4:17083219-17083238 | Msa0153610:intron | 35.0% | |
| !!! | CTTGCTTATCTGGTTTTCTT+AGG | + | chr1_4:17083229-17083248 | Msa0153610:intron | 35.0% |
| ! | GGTTTTCTTAGGTATTTGGA+TGG | + | chr1_4:17083240-17083259 | Msa0153610:intron | 35.0% |
| AAACAGTCCACTTAAAGAGT+TGG | - | chr1_4:17083394-17083413 | None:intergenic | 35.0% | |
| !! | CTCTTTAAGTGGACTGTTTA+AGG | + | chr1_4:17083395-17083414 | Msa0153610:intron | 35.0% |
| CCATGATCAAAACAGTATTG+AGG | - | chr1_4:17083448-17083467 | None:intergenic | 35.0% | |
| !!! | CCTCAATACTGTTTTGATCA+TGG | + | chr1_4:17083445-17083464 | Msa0153610:intron | 35.0% |
| CTGATTAAGCAAACTGTGTT+GGG | - | chr1_4:17083657-17083676 | None:intergenic | 35.0% | |
| ACTGATTAAGCAAACTGTGT+TGG | - | chr1_4:17083658-17083677 | None:intergenic | 35.0% | |
| ! | ACACAGTTTGCTTAATCAGT+CGG | + | chr1_4:17083658-17083677 | Msa0153610:intron | 35.0% |
| ! | ATTTTGAACTCAGACCCATT+TGG | - | chr1_4:17083857-17083876 | None:intergenic | 35.0% |
| GGTCTGAGTTCAAAATGAAT+TGG | + | chr1_4:17083861-17083880 | Msa0153610:CDS | 35.0% | |
| AAAATGAATTGGGTACAACG+CGG | + | chr1_4:17083872-17083891 | Msa0153610:CDS | 35.0% | |
| CAATGATGAACAAGAAGCTA+AGG | + | chr1_4:17084045-17084064 | Msa0153610:CDS | 35.0% | |
| !! | GACTGCATGTTTTTAATCCT+AGG | + | chr1_4:17084324-17084343 | Msa0153610:intron | 35.0% |
| ! | ATTTCTTAGCTTTCTTACCC+CGG | - | chr1_4:17084517-17084536 | None:intergenic | 35.0% |
| TTATCGCCATATCACATTGA+AGG | + | chr1_4:17084614-17084633 | Msa0153610:CDS | 35.0% | |
| CAGTTAGGTACAAATATTGC+TGG | - | chr1_4:17084679-17084698 | None:intergenic | 35.0% | |
| TTTGTACCTAACTGTGTAAG+AGG | + | chr1_4:17084685-17084704 | Msa0153610:intron | 35.0% | |
| ! | GTATTATCTGTTTCAGGTCA+TGG | - | chr1_4:17084998-17085017 | None:intergenic | 35.0% |
| GAATGAGTTATTGCAACAGA+AGG | + | chr1_4:17085043-17085062 | Msa0153610:CDS | 35.0% | |
| !! | CAAGAGCAGTTTTATAATGC+AGG | + | chr1_4:17085127-17085146 | Msa0153610:intron | 35.0% |
| !! | AGCAGTTTTATAATGCAGGT+TGG | + | chr1_4:17085131-17085150 | Msa0153610:intron | 35.0% |
| !!! | GTTTTATAATGCAGGTTGGT+TGG | + | chr1_4:17085135-17085154 | Msa0153610:intron | 35.0% |
| !! | TGGTTGGAAGTCATTTTCAA+AGG | + | chr1_4:17085151-17085170 | Msa0153610:CDS | 35.0% |
| AAGGAACATGACTTGAAAGT+TGG | + | chr1_4:17085170-17085189 | Msa0153610:CDS | 35.0% | |
| AAATACCTTGAAACTGCTCT+GGG | - | chr1_4:17085277-17085296 | None:intergenic | 35.0% | |
| CACACACATGGCTATATAAA+TGG | - | chr1_4:17085572-17085591 | None:intergenic | 35.0% | |
| ATTCTACACATTCACACACA+TGG | - | chr1_4:17085584-17085603 | None:intergenic | 35.0% | |
| TATGATCAACATCTCGATCA+TGG | + | chr1_4:17085730-17085749 | Msa0153610:CDS | 35.0% | |
| ATGATCAACATCTCGATCAT+GGG | + | chr1_4:17085731-17085750 | Msa0153610:CDS | 35.0% | |
| CGTGCAAAATCATGTATTCA+AGG | + | chr1_4:17085834-17085853 | Msa0153610:CDS | 35.0% | |
| TGAATGCAAAGTGAAGATTG+AGG | + | chr1_4:17086004-17086023 | Msa0153610:intron | 35.0% | |
| AGCACTCATATTTCATAGAG+TGG | - | chr1_4:17086156-17086175 | None:intergenic | 35.0% | |
| CATGGAAAATTAGCATAGAG+TGG | - | chr1_4:17086220-17086239 | None:intergenic | 35.0% | |
| GTAACGAAAGATAAGCAACA+TGG | - | chr1_4:17086238-17086257 | None:intergenic | 35.0% | |
| ! | AATATTGTTTGCTAGTGTCG+TGG | - | chr1_4:17086473-17086492 | None:intergenic | 35.0% |
| ! | TTTACCTGAGACTTTTTGCT+GGG | - | chr1_4:17086619-17086638 | None:intergenic | 35.0% |
| ! | CAGGTAAAGTACATGTTTTC+TGG | + | chr1_4:17086631-17086650 | Msa0153610:intron | 35.0% |
| AGTGAAATTGGGATTCTCAT+TGG | - | chr1_4:17086888-17086907 | None:intergenic | 35.0% | |
| TAATCTATCACCTTCCACAT+CGG | - | chr1_4:17086927-17086946 | None:intergenic | 35.0% | |
| ! | GCATCGTCTCTGATTTTATT+TGG | - | chr1_4:17087064-17087083 | None:intergenic | 35.0% |
| ! | TGTCTTTTTAACAGCTCACT+TGG | - | chr1_4:17087410-17087429 | None:intergenic | 35.0% |
| TGAAAGTAGAGGAAGAAACA+TGG | + | chr1_4:17087459-17087478 | Msa0153610:CDS | 35.0% | |
| TATAATGAGCATCTCGACTA+TGG | + | chr1_4:17087497-17087516 | Msa0153610:CDS | 35.0% | |
| ATAATGAGCATCTCGACTAT+GGG | + | chr1_4:17087498-17087517 | Msa0153610:CDS | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+CGG | + | chr1_4:17087551-17087570 | Msa0153610:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | + | chr1_4:17087601-17087620 | Msa0153610:CDS | 35.0% | |
| AAAACAGGAAATTCAGAAGG+CGG | + | chr1_4:17087754-17087773 | Msa0153610:intron | 35.0% | |
| TGATTAAAGATGATCGATCG+AGG | - | chr1_4:17087838-17087857 | None:intergenic | 35.0% | |
| ! | GAATACTCGAACTAGTTTGA+AGG | + | chr1_4:17088185-17088204 | Msa0153610:intron | 35.0% |
| TGGTTGGAATTTATTTGCGA+AGG | + | chr1_4:17088295-17088314 | Msa0153610:intron | 35.0% | |
| TTCCTTCATTACGATAGCTT+GGG | - | chr1_4:17088393-17088412 | None:intergenic | 35.0% | |
| ! | GGTATGATTGAGAGTACAAG+TGG | - | chr1_4:17083373-17083392 | None:intergenic | 40.0% |
| TCTTGTATTAGTGCTACGCA+TGG | + | chr1_4:17083587-17083606 | Msa0153610:intron | 40.0% | |
| TGTTCTTGCAGATGATTCCA+AGG | + | chr1_4:17083777-17083796 | Msa0153610:intron | 40.0% | |
| TGTCTCTCTACGAATTTCCT+TGG | - | chr1_4:17083797-17083816 | None:intergenic | 40.0% | |
| GGAAATTCGTAGAGAGACAT+TGG | + | chr1_4:17083798-17083817 | Msa0153610:CDS | 40.0% | |
| ! | TTTGGAAGTGTAAGCGATGT+TGG | - | chr1_4:17083839-17083858 | None:intergenic | 40.0% |
| ACATCGCTTACACTTCCAAA+TGG | + | chr1_4:17083839-17083858 | Msa0153610:CDS | 40.0% | |
| CATCGCTTACACTTCCAAAT+GGG | + | chr1_4:17083840-17083859 | Msa0153610:CDS | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | - | chr1_4:17083967-17083986 | None:intergenic | 40.0% | |
| ! | CTTTTTCTTGAGGGGTTGTT+GGG | - | chr1_4:17084122-17084141 | None:intergenic | 40.0% |
| ! | TCTTTTTCTTGAGGGGTTGT+TGG | - | chr1_4:17084123-17084142 | None:intergenic | 40.0% |
| GCATCCTTGCAAAAAGTTTC+AGG | + | chr1_4:17084223-17084242 | Msa0153610:CDS | 40.0% | |
| ! | CTTGCCTGAAACTTTTTGCA+AGG | - | chr1_4:17084230-17084249 | None:intergenic | 40.0% |
| TGAAAGCCTCTTACACAGTT+AGG | - | chr1_4:17084694-17084713 | None:intergenic | 40.0% | |
| ! | AAGGCCACAATTAGAAGTGT+TGG | + | chr1_4:17085062-17085081 | Msa0153610:CDS | 40.0% |
| CTCACCAACACTTCTAATTG+TGG | - | chr1_4:17085069-17085088 | None:intergenic | 40.0% | |
| !! | CACAATTAGAAGTGTTGGTG+AGG | + | chr1_4:17085067-17085086 | Msa0153610:CDS | 40.0% |
| TACTATTATCCCAGCCACAA+AGG | + | chr1_4:17085244-17085263 | Msa0153610:CDS | 40.0% | |
| GAAATACCTTGAAACTGCTC+TGG | - | chr1_4:17085278-17085297 | None:intergenic | 40.0% | |
| TGAAAGCAGAAGAAGGAACA+TGG | + | chr1_4:17085692-17085711 | Msa0153610:CDS | 40.0% | |
| AGAAGAAGGAACATGGTTTG+TGG | + | chr1_4:17085699-17085718 | Msa0153610:CDS | 40.0% | |
| AGAGATCGCAAAGTGAAGAT+TGG | + | chr1_4:17085784-17085803 | Msa0153610:CDS | 40.0% | |
| CTTGGTATTACGAAAGAGTG+AGG | - | chr1_4:17086263-17086282 | None:intergenic | 40.0% | |
| AAACCTCAAAGCTTGAAGGA+AGG | - | chr1_4:17086289-17086308 | None:intergenic | 40.0% | |
| GGTTAAACCTCAAAGCTTGA+AGG | - | chr1_4:17086293-17086312 | None:intergenic | 40.0% | |
| CGTGAACACATTCAACACAA+AGG | - | chr1_4:17086314-17086333 | None:intergenic | 40.0% | |
| TCATCGTTGCATGTCATACT+TGG | - | chr1_4:17086450-17086469 | None:intergenic | 40.0% | |
| ! | CTTTACCTGAGACTTTTTGC+TGG | - | chr1_4:17086620-17086639 | None:intergenic | 40.0% |
| !! | TTTGCTTTTGATCCCTGACA+AGG | + | chr1_4:17087012-17087031 | Msa0153610:intron | 40.0% |
| AACAGAAGCCCAAAAACACA+TGG | + | chr1_4:17087131-17087150 | Msa0153610:CDS | 40.0% | |
| ! | TCCTGAGACCATGTGTTTTT+GGG | - | chr1_4:17087142-17087161 | None:intergenic | 40.0% |
| AGAGGAAGAAACATGGTTTG+TGG | + | chr1_4:17087466-17087485 | Msa0153610:CDS | 40.0% | |
| TCTTGATGAACCTTGAGGAT+TGG | - | chr1_4:17087806-17087825 | None:intergenic | 40.0% | |
| CAATGTCTTGATGAACCTTG+AGG | - | chr1_4:17087811-17087830 | None:intergenic | 40.0% | |
| TAGTGTTGCACTAGCTACTA+TGG | + | chr1_4:17087961-17087980 | Msa0153610:intron | 40.0% | |
| TTGCACTAGCTACTATGGAA+TGG | + | chr1_4:17087966-17087985 | Msa0153610:intron | 40.0% | |
| TTGAAGGGACCGAAAGAATA+AGG | + | chr1_4:17088201-17088220 | Msa0153610:intron | 40.0% | |
| TGAAGGGACCGAAAGAATAA+GGG | + | chr1_4:17088202-17088221 | Msa0153610:intron | 40.0% | |
| AAACGTTCCATTGTGAACAC+TGG | + | chr1_4:17088275-17088294 | Msa0153610:intron | 40.0% | |
| ATTCCAACCAGTGTTCACAA+TGG | - | chr1_4:17088285-17088304 | None:intergenic | 40.0% | |
| TTCCCAAGCTATCGTAATGA+AGG | + | chr1_4:17088388-17088407 | Msa0153610:CDS | 40.0% | |
| CTTCCTTCATTACGATAGCT+TGG | - | chr1_4:17088394-17088413 | None:intergenic | 40.0% | |
| CAAGCTATCGTAATGAAGGA+AGG | + | chr1_4:17088392-17088411 | Msa0153610:CDS | 40.0% | |
| TCAAGTGTTCACTATGGACG+TGG | + | chr1_4:17082896-17082915 | Msa0153610:CDS | 45.0% | |
| CAAGTGTTCACTATGGACGT+GGG | + | chr1_4:17082897-17082916 | Msa0153610:CDS | 45.0% | |
| ATTAGTGCTACGCATGGCTT+TGG | + | chr1_4:17083593-17083612 | Msa0153610:intron | 45.0% | |
| ! | ACGATGTTTGGCTTCAGAAC+TGG | + | chr1_4:17083897-17083916 | Msa0153610:CDS | 45.0% |
| ! | TTTGGCTTCAGAACTGGAAG+AGG | + | chr1_4:17083903-17083922 | Msa0153610:CDS | 45.0% |
| ACACCTCAAGGGACAAACAT+TGG | + | chr1_4:17084178-17084197 | Msa0153610:CDS | 45.0% | |
| TTGCCAATGTTTGTCCCTTG+AGG | - | chr1_4:17084184-17084203 | None:intergenic | 45.0% | |
| GCAGAGGCTAATAGAAACTG+TGG | + | chr1_4:17084488-17084507 | Msa0153610:CDS | 45.0% | |
| GAGGCTAATAGAAACTGTGG+AGG | + | chr1_4:17084491-17084510 | Msa0153610:CDS | 45.0% | |
| CTAATAGAAACTGTGGAGGC+CGG | + | chr1_4:17084495-17084514 | Msa0153610:CDS | 45.0% | |
| TAATAGAAACTGTGGAGGCC+GGG | + | chr1_4:17084496-17084515 | Msa0153610:CDS | 45.0% | |
| GTGAAACTAGGACTCCCATT+GGG | - | chr1_4:17084587-17084606 | None:intergenic | 45.0% | |
| TGTGAAACTAGGACTCCCAT+TGG | - | chr1_4:17084588-17084607 | None:intergenic | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | + | chr1_4:17085072-17085091 | Msa0153610:CDS | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | + | chr1_4:17085073-17085092 | Msa0153610:CDS | 45.0% |
| TGTCTCTTCAACAGCTCACT+TGG | - | chr1_4:17085643-17085662 | None:intergenic | 45.0% | |
| GTGGAGTTGAAAGCAGAAGA+AGG | + | chr1_4:17085685-17085704 | Msa0153610:CDS | 45.0% | |
| ! | AGAAGGAACATGGTTTGTGG+AGG | + | chr1_4:17085702-17085721 | Msa0153610:CDS | 45.0% |
| ATCAACATCTCGATCATGGG+TGG | + | chr1_4:17085734-17085753 | Msa0153610:CDS | 45.0% | |
| GATCATGGGTGGTTCACTAA+AGG | + | chr1_4:17085745-17085764 | Msa0153610:CDS | 45.0% | |
| ATGGGTGGTTCACTAAAGGT+TGG | + | chr1_4:17085749-17085768 | Msa0153610:CDS | 45.0% | |
| GGTATTACGAAAGAGTGAGG+AGG | - | chr1_4:17086260-17086279 | None:intergenic | 45.0% | |
| AAGCTTGAAGGAAGGAGACT+TGG | - | chr1_4:17086281-17086300 | None:intergenic | 45.0% | |
| TCTCCTTCCTTCAAGCTTTG+AGG | + | chr1_4:17086283-17086302 | Msa0153610:intron | 45.0% | |
| GTGTTCACGACAGTTATGTG+CGG | + | chr1_4:17086325-17086344 | Msa0153610:intron | 45.0% | |
| AGCAGTGCTCTCATTTGTGT+TGG | - | chr1_4:17086547-17086566 | None:intergenic | 45.0% | |
| GCAGAGGCTAATAGAATCAG+AGG | + | chr1_4:17086788-17086807 | Msa0153610:intron | 45.0% | |
| GAGGCTAATAGAATCAGAGG+AGG | + | chr1_4:17086791-17086810 | Msa0153610:intron | 45.0% | |
| AATAGAATCAGAGGAGGCAG+TGG | + | chr1_4:17086797-17086816 | Msa0153610:CDS | 45.0% | |
| CAAATTATCGCGATCCGATG+TGG | + | chr1_4:17086910-17086929 | Msa0153610:intron | 45.0% | |
| GACGATGCCAGAAGAAGATA+TGG | + | chr1_4:17087076-17087095 | Msa0153610:CDS | 45.0% | |
| ! | CTCCTGAGACCATGTGTTTT+TGG | - | chr1_4:17087143-17087162 | None:intergenic | 45.0% |
| TTCGGTGGAGTTGAAAGTAG+AGG | + | chr1_4:17087448-17087467 | Msa0153610:CDS | 45.0% | |
| ! | GGAAGAAACATGGTTTGTGG+AGG | + | chr1_4:17087469-17087488 | Msa0153610:CDS | 45.0% |
| CTCAAACAAGCAAGTGTCTC+CGG | - | chr1_4:17087573-17087592 | None:intergenic | 45.0% | |
| GAAACTGTGTTCTTCCCTCA+TGG | + | chr1_4:17087719-17087738 | Msa0153610:intron | 45.0% | |
| ! | GAAGCATCCATCATACCTGT+TGG | - | chr1_4:17087781-17087800 | None:intergenic | 45.0% |
| TGATGAACCTTGAGGATTGG+AGG | - | chr1_4:17087803-17087822 | None:intergenic | 45.0% | |
| CTCGCCAACCCTTATTCTTT+CGG | - | chr1_4:17088213-17088232 | None:intergenic | 45.0% | |
| GAGCTTGGAAGGTGAATATG+AGG | + | chr1_4:17088237-17088256 | Msa0153610:intron | 45.0% | |
| GTTCCATTGTGAACACTGGT+TGG | + | chr1_4:17088279-17088298 | Msa0153610:intron | 45.0% | |
| TACAACGCGGTGACGATGTT+TGG | + | chr1_4:17083885-17083904 | Msa0153610:CDS | 50.0% | |
| ! | ACTAGTGCTGCTACACCTCA+AGG | + | chr1_4:17084166-17084185 | Msa0153610:CDS | 50.0% |
| ! | CTAGTGCTGCTACACCTCAA+GGG | + | chr1_4:17084167-17084186 | Msa0153610:CDS | 50.0% |
| TACGTAAATACAGCGGGCCT+AGG | - | chr1_4:17084344-17084363 | None:intergenic | 50.0% | |
| AATAGAAACTGTGGAGGCCG+GGG | + | chr1_4:17084497-17084516 | Msa0153610:CDS | 50.0% | |
| !! | AGAGCACTGCTACACCTCAA+GGG | + | chr1_4:17086556-17086575 | Msa0153610:intron | 50.0% |
| ACACCTCAAGGGACAAGCAT+TGG | + | chr1_4:17086567-17086586 | Msa0153610:intron | 50.0% | |
| TTGCCAATGCTTGTCCCTTG+AGG | - | chr1_4:17086573-17086592 | None:intergenic | 50.0% | |
| GCAACCCAGCAAAAAGTCTC+AGG | + | chr1_4:17086612-17086631 | Msa0153610:intron | 50.0% | |
| TTATCGCGATCCGATGTGGA+AGG | + | chr1_4:17086914-17086933 | Msa0153610:intron | 50.0% | |
| TTTGATCCCTGACAAGGCTG+TGG | + | chr1_4:17087018-17087037 | Msa0153610:intron | 50.0% | |
| GCCCAAAAACACATGGTCTC+AGG | + | chr1_4:17087138-17087157 | Msa0153610:CDS | 50.0% | |
| ATGAGCATCTCGACTATGGG+TGG | + | chr1_4:17087501-17087520 | Msa0153610:CDS | 50.0% | |
| GACTATGGGTGGTTCACTGA+AGG | + | chr1_4:17087512-17087531 | Msa0153610:CDS | 50.0% | |
| AATTCAGAAGGCGGTCCAAC+AGG | + | chr1_4:17087763-17087782 | Msa0153610:intron | 50.0% | |
| GATGCTTCCTCCAATCCTCA+AGG | + | chr1_4:17087793-17087812 | Msa0153610:intron | 50.0% | |
| GGGACCGAAAGAATAAGGGT+TGG | + | chr1_4:17088206-17088225 | Msa0153610:intron | 50.0% | |
| ! | CGAAAGAATAAGGGTTGGCG+AGG | + | chr1_4:17088211-17088230 | Msa0153610:intron | 50.0% |
| TGGACGTGGGAGTGAAGCTA+AGG | + | chr1_4:17082910-17082929 | Msa0153610:CDS | 55.0% | |
| GGACGTGGGAGTGAAGCTAA+GGG | + | chr1_4:17082911-17082930 | Msa0153610:CDS | 55.0% | |
| TTTGCGCGCTCTCTCAGATG+TGG | + | chr1_4:17083926-17083945 | Msa0153610:CDS | 55.0% | |
| GGCATGGTTCCTTTGTGGCT+GGG | - | chr1_4:17085256-17085275 | None:intergenic | 55.0% | |
| CTCTGGGCATGGTTCCTTTG+TGG | - | chr1_4:17085261-17085280 | None:intergenic | 55.0% | |
| ! | CCTTGAAACTGCTCTGGGCA+TGG | - | chr1_4:17085272-17085291 | None:intergenic | 55.0% |
| CCATGCCCAGAGCAGTTTCA+AGG | + | chr1_4:17085269-17085288 | Msa0153610:CDS | 55.0% | |
| !! | GAGAGCACTGCTACACCTCA+AGG | + | chr1_4:17086555-17086574 | Msa0153610:intron | 55.0% |
| ! | GCATGTCCACAGCCTTGTCA+GGG | - | chr1_4:17087027-17087046 | None:intergenic | 55.0% |
| ! | TGCATGTCCACAGCCTTGTC+AGG | - | chr1_4:17087028-17087047 | None:intergenic | 55.0% |
| ATGGGTGGTTCACTGAAGGC+TGG | + | chr1_4:17087516-17087535 | Msa0153610:CDS | 55.0% | |
| AGGCGGTCCAACAGGTATGA+TGG | + | chr1_4:17087771-17087790 | Msa0153610:intron | 55.0% | |
| TGGCGAGGATAGAGCTTGGA+AGG | + | chr1_4:17088226-17088245 | Msa0153610:intron | 55.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | + | chr1_4:17085078-17085097 | Msa0153610:CDS | 60.0% |
| GGGCATGGTTCCTTTGTGGC+TGG | - | chr1_4:17085257-17085276 | None:intergenic | 60.0% | |
| ! | GGGTTGGCGAGGATAGAGCT+TGG | + | chr1_4:17088222-17088241 | Msa0153610:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 17082893 | 17088424 | 17082893 | ID=Msa0153610;Name=Msa0153610 |
| chr1_4 | mRNA | 17082893 | 17088424 | 17082893 | ID=Msa0153610-mRNA-1;Parent=Msa0153610;Name=Msa0153610-mRNA-1;_AED=0.11;_eAED=0.18;_QI=0|0|0|1|0.41|0.23|13|0|625 |
| chr1_4 | exon | 17082893 | 17082985 | 17082893 | ID=Msa0153610-mRNA-1:exon:6501;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17083788 | 17083978 | 17083788 | ID=Msa0153610-mRNA-1:exon:6502;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17084012 | 17084248 | 17084012 | ID=Msa0153610-mRNA-1:exon:6503;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17084484 | 17084649 | 17084484 | ID=Msa0153610-mRNA-1:exon:6504;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17085011 | 17085103 | 17085011 | ID=Msa0153610-mRNA-1:exon:6505;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17085149 | 17085290 | 17085149 | ID=Msa0153610-mRNA-1:exon:6506;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17085482 | 17085543 | 17085482 | ID=Msa0153610-mRNA-1:exon:6507;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17085628 | 17085873 | 17085628 | ID=Msa0153610-mRNA-1:exon:6508;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17086792 | 17086928 | 17086792 | ID=Msa0153610-mRNA-1:exon:6509;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17087049 | 17087161 | 17087049 | ID=Msa0153610-mRNA-1:exon:6510;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17087253 | 17087311 | 17087253 | ID=Msa0153610-mRNA-1:exon:6511;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17087395 | 17087622 | 17087395 | ID=Msa0153610-mRNA-1:exon:6512;Parent=Msa0153610-mRNA-1 |
| chr1_4 | exon | 17088317 | 17088424 | 17088317 | ID=Msa0153610-mRNA-1:exon:6513;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17082893 | 17082985 | 17082893 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17083788 | 17083978 | 17083788 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17084012 | 17084248 | 17084012 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17084484 | 17084649 | 17084484 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17085011 | 17085103 | 17085011 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17085149 | 17085290 | 17085149 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17085482 | 17085543 | 17085482 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17085628 | 17085873 | 17085628 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17086792 | 17086928 | 17086792 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17087049 | 17087161 | 17087049 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17087253 | 17087311 | 17087253 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17087395 | 17087622 | 17087395 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| chr1_4 | CDS | 17088317 | 17088424 | 17088317 | ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
