AlfalfaGEDB | Msa0153610

M. sativa cultivar zhongmu-4 / Msa0153610

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153610	KEH26464.1	51.681	238	79	4	352	589	265	466	1.53e-62	225
Msa0153610	KEH26464.1	65.751	473	97	5	1	410	2	472	0.0	601

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153610	A0A072U9K2	51.681	238	79	4	352	589	265	466	7.31e-63	225
Msa0153610	A0A072U9K2	65.751	473	97	5	1	410	2	472	0.0	601

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TFs/TRs:

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Gene ID	Type	Classification
Msa0153610	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0153610	MtrunA17_Chr6g0476171	74.297	249	46	4	177	410	2	247	2.28e-121	360
Msa0153610	MtrunA17_Chr6g0476171	74.286	105	26	1	485	589	138	241	1.49e-47	167
Msa0153610	MtrunA17_Chr1g0163101	63.542	192	33	3	1	175	1	172	9.00e-74	234
Msa0153610	MtrunA17_Chr1g0163131	42.056	321	136	8	5	295	6	306	6.64e-65	216
Msa0153610	MtrunA17_Chr1g0163131	44.595	74	39	1	516	589	231	302	1.19e-12	69.3
Msa0153610	MtrunA17_Chr1g0163131	43.590	78	42	1	331	408	231	306	1.37e-12	68.9
Msa0153610	MtrunA17_Chr6g0476181	67.974	153	38	1	32	173	1	153	1.69e-64	209
Msa0153610	MtrunA17_Chr1g0163141	68.944	161	32	3	31	173	9	169	2.40e-62	204
Msa0153610	MtrunA17_Chr1g0163181	34.152	448	198	19	26	408	14	429	1.08e-58	203
Msa0153610	MtrunA17_Chr1g0162161	60.000	165	33	3	32	180	3	150	2.01e-55	185

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 109 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACATGATATATTTAG+TGG	0.333899	1_4:+17087422	Msa0153610:CDS
AAAATGAATTGGGTACAACG+CGG	0.771281	1_4:+17083872	Msa0153610:CDS
AAATACCTTGAAACTGCTCT+GGG	0.589681	1_4:-17085274	None:intergenic
AAGAGACATAATATATTTAG+TGG	0.341164	1_4:+17085655	Msa0153610:CDS
AAGGAACATGACTTGAAAGT+TGG	0.470859	1_4:+17085170	Msa0153610:CDS
AAGGCCACAATTAGAAGTGT+TGG	0.571434	1_4:+17085062	Msa0153610:CDS
AATAGAAACTGTGGAGGCCG+GGG	0.552110	1_4:+17084497	Msa0153610:CDS
AATAGAATCAGAGGAGGCAG+TGG	0.572767	1_4:+17086797	Msa0153610:CDS
AATCTGACCCTCCTTTGTAT+TGG	0.385935	1_4:-17083964	None:intergenic
ACACCTCAAGGGACAAACAT+TGG	0.575666	1_4:+17084178	Msa0153610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCACAAAGTTGAATGGTT+TGG	-	chr1_4:17082949-17082968	None:intergenic	30.0%
TAAAAACAAACAGCCATGTA+CGG	+	chr1_4:17083302-17083321	Msa0153610:intron	30.0%
TAATGGAATTCATCATTTGG+TGG	+	chr1_4:17083337-17083356	Msa0153610:intron	30.0%
AATCATACCAACTCTTTAAG+TGG	+	chr1_4:17083384-17083403	Msa0153610:intron	30.0%
GTCTGAGTTCAAAATGAATT+GGG	+	chr1_4:17083862-17083881	Msa0153610:CDS	30.0%
TTCACAAATTATCATCCCAA+TGG	+	chr1_4:17084569-17084588	Msa0153610:CDS	30.0%
TCACAAATTATCATCCCAAT+GGG	+	chr1_4:17084570-17084589	Msa0153610:CDS	30.0%
GATAATTTGACTGTGAAACT+AGG	-	chr1_4:17084599-17084618	None:intergenic	30.0%
ATAAGTATATGTAACGTGCA+TGG	-	chr1_4:17084944-17084963	None:intergenic	30.0%
ATCTAGGTATTATCTGTTTC+AGG	-	chr1_4:17085004-17085023	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	17082893	17088424	17082893	ID=Msa0153610;Name=Msa0153610
chr1_4	mRNA	17082893	17088424	17082893	ID=Msa0153610-mRNA-1;Parent=Msa0153610;Name=Msa0153610-mRNA-1;_AED=0.11;_eAED=0.18;_QI=0\|0\|0\|1\|0.41\|0.23\|13\|0\|625
chr1_4	exon	17082893	17082985	17082893	ID=Msa0153610-mRNA-1:exon:6501;Parent=Msa0153610-mRNA-1
chr1_4	exon	17083788	17083978	17083788	ID=Msa0153610-mRNA-1:exon:6502;Parent=Msa0153610-mRNA-1
chr1_4	exon	17084012	17084248	17084012	ID=Msa0153610-mRNA-1:exon:6503;Parent=Msa0153610-mRNA-1
chr1_4	exon	17084484	17084649	17084484	ID=Msa0153610-mRNA-1:exon:6504;Parent=Msa0153610-mRNA-1
chr1_4	exon	17085011	17085103	17085011	ID=Msa0153610-mRNA-1:exon:6505;Parent=Msa0153610-mRNA-1
chr1_4	exon	17085149	17085290	17085149	ID=Msa0153610-mRNA-1:exon:6506;Parent=Msa0153610-mRNA-1
chr1_4	exon	17085482	17085543	17085482	ID=Msa0153610-mRNA-1:exon:6507;Parent=Msa0153610-mRNA-1
chr1_4	exon	17085628	17085873	17085628	ID=Msa0153610-mRNA-1:exon:6508;Parent=Msa0153610-mRNA-1
chr1_4	exon	17086792	17086928	17086792	ID=Msa0153610-mRNA-1:exon:6509;Parent=Msa0153610-mRNA-1
chr1_4	exon	17087049	17087161	17087049	ID=Msa0153610-mRNA-1:exon:6510;Parent=Msa0153610-mRNA-1
chr1_4	exon	17087253	17087311	17087253	ID=Msa0153610-mRNA-1:exon:6511;Parent=Msa0153610-mRNA-1
chr1_4	exon	17087395	17087622	17087395	ID=Msa0153610-mRNA-1:exon:6512;Parent=Msa0153610-mRNA-1
chr1_4	exon	17088317	17088424	17088317	ID=Msa0153610-mRNA-1:exon:6513;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17082893	17082985	17082893	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17083788	17083978	17083788	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17084012	17084248	17084012	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17084484	17084649	17084484	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17085011	17085103	17085011	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17085149	17085290	17085149	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17085482	17085543	17085482	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17085628	17085873	17085628	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17086792	17086928	17086792	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17087049	17087161	17087049	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17087253	17087311	17087253	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17087395	17087622	17087395	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1
chr1_4	CDS	17088317	17088424	17088317	ID=Msa0153610-mRNA-1:cds;Parent=Msa0153610-mRNA-1

Gene Sequence

>Msa0153610

ATGTCAAGTGTTCACTATGGACGTGGGAGTGAAGCTAAGGGAATGCATTTTTACCAAACCATTCAACTTTGTGAATTGCAGGATGAAGAGCTTATGATTCCAAGGAAATTCGTAGAGAGACATTGGAAAGATGTATCAAATCCAACATCGCTTACACTTCCAAATGGGTCTGAGTTCAAAATGAATTGGGTACAACGCGGTGACGATGTTTGGCTTCAGAACTGGAAGAGGTTTGCGCGCTCTCTCAGATGTGGAGATCTTTTAGTTTTCCAATACAAAGGAGGTAGTTTGGAAATTGACTATTCATGTATGAGATGCAATGATGAACAAGAAGCTAAGGAGAGTGATGATGATGATGACTGTGTTGAGATTCCGAATGATCATGAAAATACCCAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGACATTGCTACTAGTGCTGCTACACCTCAAGGGACAAACATTGGCAAGAGAAAAATTAATATCAATGCATCCTTGCAAAAAGTTTCAGGCAATTTTGCAGAGGCTAATAGAAACTGTGGAGGCCGGGGTAAGAAAGCTAAGAAATGCACAAAAACTAAAGATAGGAATGAGAGAAGTTTCACAAATTATCATCCCAATGGGAGTCCTAGTTTCACAGTCAAATTATCGCCATATCACATTGAAGGTTATAATAGATTGATAATACCTAGATGGTTTTCGAAAGAATACATGAATGAGTTATTGCAACAGAAGGCCACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTTGGTTGGAAGTCATTTTCAAAGGAACATGACTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCAAACCACTTTCATTCACAATTACTATTATCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAGCAGATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTCGACAAGCTGGTTGTACTACCAAGTGAGCTGTTGAAGAGACATAATATATTTAGTGGAAATTTAGTGGAGTTGAAAGCAGAAGAAGGAACATGGTTTGTGGAGGTGAATTATGATCAACATCTCGATCATGGGTGGTTCACTAAAGGTTGGCAAGAATTTATGAGAGATCGCAAAGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGACGTGCAAAATCATGTATTCAAGGTTTCAATTATTCCAGATAGGCTAATAGAATCAGAGGAGGCAGTGGTAAGAAAGCTAATAAATACACAAAAAGTAAAGATGGGAATGAGAGAAGTTACACAAATTCTCAAGCCAATGAGAATCCCAATTTCACTCTCAAATTATCGCGATCCGATAAAACAACGACTCCAAATAAAATCAGAGACGATGCCAGAAGAAGATATGGAATATGTGAGCAATTTTGGAGAACGAATTTCAAACAGAAGCCCAAAAACACATGGTCTCAGGAATTCTGTAAGTCCGAATTTACATGACAAATTCAAGGTTTTTGTAACATCATTAGACAAGTTGGTTGTACTACCAAGTGAGCTGTTAAAAAGACATGATATATTTAGTGGAAATTCGGTGGAGTTGAAAGTAGAGGAAGAAACATGGTTTGTGGAGGTGAGTTATAATGAGCATCTCGACTATGGGTGGTTCACTGAAGGCTGGCAAGAATTTGTAAGAGATTGCAAAGTAAAGACCGGAGACACTTGCTTGTTTGAGATGATTGATGTGCAAAATCATGTGTTCAAGGAAAATAAATTGCAAGTTGTTCGTAAGTTTGAGATTACTCAATCCAAACTACTTTCAATTAATATCTCTATTTCCCAAGCTATCGTAATGAAGGAAGGTGATGAAGAA

Protein sequence

>Msa0153610

MSSVHYGRGSEAKGMHFYQTIQLCELQDEELMIPRKFVERHWKDVSNPTSLTLPNGSEFKMNWVQRGDDVWLQNWKRFARSLRCGDLLVFQYKGGSLEIDYSCMRCNDEQEAKESDDDDDCVEIPNDHENTQQPLKKKKINSNDIATSAATPQGTNIGKRKININASLQKVSGNFAEANRNCGGRGKKAKKCTKTKDRNERSFTNYHPNGSPSFTVKLSPYHIEGYNRLIIPRWFSKEYMNELLQQKATIRSVGEDRAWYVGWKSFSKEHDLKVGDVCKFEMTQRKPLSFTITIIPATKEPCPEQFQADSVSPNLHDKFKVFVTSFDKLVVLPSELLKRHNIFSGNLVELKAEEGTWFVEVNYDQHLDHGWFTKGWQEFMRDRKVKIGDTCLFEMIDVQNHVFKVSIIPDRLIESEEAVVRKLINTQKVKMGMREVTQILKPMRIPISLSNYRDPIKQRLQIKSETMPEEDMEYVSNFGERISNRSPKTHGLRNSVSPNLHDKFKVFVTSLDKLVVLPSELLKRHDIFSGNSVELKVEEETWFVEVSYNEHLDYGWFTEGWQEFVRDCKVKTGDTCLFEMIDVQNHVFKENKLQVVRKFEITQSKLLSINISISQAIVMKEGDEE