Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154310 | XP_039688138.1 | 82.990 | 194 | 12 | 2 | 1 | 175 | 1 | 192 | 1.83e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154310 | sp|Q1G3Q4|RITF1_ARATH | 34.328 | 134 | 62 | 5 | 10 | 122 | 5 | 133 | 1.25e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154310 | A0A072VGU3 | 69.072 | 194 | 12 | 3 | 1 | 175 | 1 | 165 | 1.62e-80 | 245 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0154310 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154310 | MtrunA17_Chr1g0161601 | 95.588 | 68 | 3 | 0 | 1 | 68 | 38 | 105 | 1.95e-45 | 146 |
| Msa0154310 | MtrunA17_Chr8g0392151 | 37.885 | 227 | 75 | 4 | 12 | 172 | 14 | 240 | 7.05e-43 | 142 |
| Msa0154310 | MtrunA17_Chr7g0230511 | 36.957 | 138 | 60 | 5 | 5 | 121 | 3 | 134 | 5.54e-18 | 78.6 |
| Msa0154310 | MtrunA17_Chr2g0297251 | 30.625 | 160 | 82 | 6 | 10 | 145 | 36 | 190 | 4.19e-12 | 62.8 |
| Msa0154310 | MtrunA17_Chr4g0065041 | 34.091 | 132 | 61 | 5 | 10 | 120 | 7 | 133 | 1.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154310 | AT2G01818.1 | 38.571 | 140 | 58 | 6 | 9 | 121 | 9 | 147 | 5.60e-19 | 80.9 |
| Msa0154310 | AT3G60670.1 | 35.385 | 130 | 58 | 5 | 13 | 121 | 9 | 133 | 3.28e-15 | 71.2 |
| Msa0154310 | AT2G12646.3 | 34.328 | 134 | 62 | 5 | 10 | 122 | 2 | 130 | 1.21e-12 | 64.3 |
| Msa0154310 | AT2G12646.1 | 34.328 | 134 | 62 | 5 | 10 | 122 | 5 | 133 | 1.28e-12 | 64.3 |
| Msa0154310 | AT2G12646.2 | 34.328 | 134 | 62 | 5 | 10 | 122 | 5 | 133 | 1.28e-12 | 64.3 |
Find 21 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCAGCCTCTGAATTT+TGG | 0.202823 | 1_4:-18795664 | None:intergenic |
| GACATAATAAGAAATTATTT+TGG | 0.228583 | 1_4:+18795889 | Msa0154310:three_prime_UTR |
| TACCAAATGGAAAAGAAGAT+TGG | 0.357613 | 1_4:+18792744 | Msa0154310:CDS |
| TGTTGTTACCTTGCATTTGA+TGG | 0.360512 | 1_4:-18795239 | None:intergenic |
| TGTCTTTGCTACTGCTAGTC+GGG | 0.379634 | 1_4:-18795137 | None:intergenic |
| ACCCTTTCAACAGATTCATT+TGG | 0.404698 | 1_4:-18795704 | None:intergenic |
| TAGATCTCAATTGAGGAGCT+TGG | 0.455572 | 1_4:+18795623 | Msa0154310:intron |
| ATGTCTTTGCTACTGCTAGT+CGG | 0.459833 | 1_4:-18795138 | None:intergenic |
| AAACTAGAGATAGATCTCAT+AGG | 0.499860 | 1_4:-18795758 | None:intergenic |
| GTGAAGCGTAGTTTACCAAA+TGG | 0.503152 | 1_4:+18792731 | Msa0154310:CDS |
| ATCTCATTCACTTCATCGAA+AGG | 0.522762 | 1_4:+18792883 | Msa0154310:CDS |
| AACCAAATGAATCTGTTGAA+AGG | 0.544922 | 1_4:+18795702 | Msa0154310:CDS |
| ACCAAATGAATCTGTTGAAA+GGG | 0.545715 | 1_4:+18795703 | Msa0154310:CDS |
| TGAATCTCAGAAAGCGTCCA+AGG | 0.581640 | 1_4:+18795726 | Msa0154310:CDS |
| GTATTGTTAGATCTCAATTG+AGG | 0.590386 | 1_4:+18795616 | Msa0154310:intron |
| ACATCTCAAAAGCAAGCTGG+TGG | 0.603751 | 1_4:+18795163 | Msa0154310:CDS |
| TCAACATCTCAAAAGCAAGC+TGG | 0.604147 | 1_4:+18795160 | Msa0154310:CDS |
| GTCTTTGCTACTGCTAGTCG+GGG | 0.609471 | 1_4:-18795136 | None:intergenic |
| ATTCTGTTCCATCAAATGCA+AGG | 0.622156 | 1_4:+18795231 | Msa0154310:CDS |
| AAATGATCACCAAAATTCAG+AGG | 0.644619 | 1_4:+18795655 | Msa0154310:CDS |
| GGTGGAATTTGTGAAGAATG+TGG | 0.715683 | 1_4:+18795181 | Msa0154310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTTATACTAAAAAAT+TGG | - | chr1_4:18793098-18793117 | None:intergenic | 10.0% |
| !! | CAAAATTTATACTAAAAAAT+TGG | - | chr1_4:18793098-18793117 | None:intergenic | 10.0% |
| !! | TTCTATTTATACTAAAAAAT+TGG | - | chr1_4:18793396-18793415 | None:intergenic | 10.0% |
| !!! | AACTAAAAATTGATTTATTT+TGG | + | chr1_4:18793826-18793845 | Msa0154310:intron | 10.0% |
| !!! | TTTATTTATTAGTATCATTT+TGG | + | chr1_4:18793941-18793960 | Msa0154310:intron | 10.0% |
| !! | TTTGAATAAAACTAATAAAA+AGG | + | chr1_4:18794237-18794256 | Msa0154310:intron | 10.0% |
| !!! | AACTAAAAATTGATTTATTT+CGG | - | chr1_4:18793826-18793845 | None:intergenic | 10.0% |
| !! | ACTACAATTAATAAAAAAAA+GGG | - | chr1_4:18794730-18794749 | None:intergenic | 10.0% |
| !! | AACTACAATTAATAAAAAAA+AGG | - | chr1_4:18794731-18794750 | None:intergenic | 10.0% |
| !! | ATGATAAAAAAGAATTTATA+AGG | - | chr1_4:18795360-18795379 | None:intergenic | 10.0% |
| !!! | TGTTAATTTATTTTAATGTA+GGG | + | chr1_4:18795508-18795527 | Msa0154310:intron | 10.0% |
| !!! | TCAATAAAAGTTGATATAAA+TGG | + | chr1_4:18793205-18793224 | Msa0154310:intron | 15.0% |
| !!! | TTTTTTAGTATAAATAGAAC+CGG | + | chr1_4:18793397-18793416 | Msa0154310:intron | 15.0% |
| !! | AATTGTATGTAAAAAAAAAG+TGG | + | chr1_4:18793643-18793662 | Msa0154310:intron | 15.0% |
| !!! | ATAAATCAATTTTTAGTTAG+AGG | - | chr1_4:18794298-18794317 | None:intergenic | 15.0% |
| !! | ATACTAATAAATAAAGTTAG+AGG | - | chr1_4:18793936-18793955 | None:intergenic | 15.0% |
| !! | ATAACAGTTACTAATAATAT+CGG | - | chr1_4:18794004-18794023 | None:intergenic | 15.0% |
| !!! | TATTAGTTTTATTCAAATAG+AGG | - | chr1_4:18794234-18794253 | None:intergenic | 15.0% |
| !!! | ATAAATCAATTTTTAGTTAG+AGG | + | chr1_4:18794298-18794317 | Msa0154310:intron | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+CGG | - | chr1_4:18794895-18794914 | None:intergenic | 15.0% |
| !! | GAAACTAAAACAAAATAATA+AGG | - | chr1_4:18795412-18795431 | None:intergenic | 15.0% |
| !!! | AAATTAACACTTTTTTGTTT+TGG | - | chr1_4:18795497-18795516 | None:intergenic | 15.0% |
| !!! | GTGTTAATTTATTTTAATGT+AGG | + | chr1_4:18795507-18795526 | Msa0154310:intron | 15.0% |
| !! | TTCACATTAAAATAAAATGT+AGG | - | chr1_4:18795563-18795582 | None:intergenic | 15.0% |
| !!! | GACATAATAAGAAATTATTT+TGG | + | chr1_4:18795889-18795908 | Msa0154310:three_prime_UTR | 15.0% |
| !!! | TCAATAAAAGTTGATGTAAA+TGG | + | chr1_4:18793056-18793075 | Msa0154310:intron | 20.0% |
| !! | TTTGAATAAAACTAACAGAA+AGG | - | chr1_4:18793885-18793904 | None:intergenic | 20.0% |
| !!! | TTTTATTCAAACAAACGTTA+GGG | + | chr1_4:18793894-18793913 | Msa0154310:intron | 20.0% |
| !! | TTAATCATAATACCTTAACA+AGG | - | chr1_4:18793974-18793993 | None:intergenic | 20.0% |
| !! | GATATTATTAGTAACTGTTA+TGG | + | chr1_4:18794003-18794022 | Msa0154310:intron | 20.0% |
| !!! | TAAGAAAAGATTCTCTTTTT+AGG | + | chr1_4:18794055-18794074 | Msa0154310:intron | 20.0% |
| !! | CATTGAATAGTTAATGTATA+TGG | - | chr1_4:18794119-18794138 | None:intergenic | 20.0% |
| !!! | AGCTAAAACTTTTAAAAGAT+AGG | - | chr1_4:18794373-18794392 | None:intergenic | 20.0% |
| !!! | TATTGTCTAATTCACAATTT+TGG | + | chr1_4:18794509-18794528 | Msa0154310:intron | 20.0% |
| !! | AGTGATTAAATACACATTTA+AGG | + | chr1_4:18794597-18794616 | Msa0154310:intron | 20.0% |
| !! | TTCAATGTAACTATATGTAT+CGG | + | chr1_4:18794921-18794940 | Msa0154310:intron | 20.0% |
| !!! | TGAAACTGATTTAAAATCTA+AGG | + | chr1_4:18795450-18795469 | Msa0154310:intron | 20.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_4:18792811-18792830 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_4:18792964-18792983 | Msa0154310:intron | 25.0% |
| ! | CTTTATCTGATAAATAAGAC+CGG | - | chr1_4:18793031-18793050 | None:intergenic | 25.0% |
| ! | CTTATTTATCAGATAAAGTG+AGG | + | chr1_4:18793033-18793052 | Msa0154310:intron | 25.0% |
| ! | CTTTATCTGATAAATAAGAC+CGG | - | chr1_4:18793031-18793050 | None:intergenic | 25.0% |
| ! | CTTATTTATCAGATAAAGTC+AGG | + | chr1_4:18793182-18793201 | Msa0154310:intron | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_4:18792964-18792983 | Msa0154310:intron | 25.0% |
| ! | CTTTATCTGATAAATAAGAC+CGG | - | chr1_4:18793031-18793050 | None:intergenic | 25.0% |
| ! | CTTATTTATCAGATAAAGTC+AGG | + | chr1_4:18793182-18793201 | Msa0154310:intron | 25.0% |
| ! | TCAATAAACGTTGATGTAAA+TGG | + | chr1_4:18793354-18793373 | Msa0154310:intron | 25.0% |
| ! | ATGAAATCAATTAATACCTC+CGG | - | chr1_4:18793419-18793438 | None:intergenic | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_4:18793502-18793521 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_4:18793523-18793542 | Msa0154310:intron | 25.0% |
| ! | AAATGATAACCATTGATGAA+TGG | + | chr1_4:18793594-18793613 | Msa0154310:intron | 25.0% |
| ! | CTATAAATTCCATTCATCAA+TGG | - | chr1_4:18793606-18793625 | None:intergenic | 25.0% |
| !! | CTAGAATGATAGTATCTTTT+TGG | + | chr1_4:18793749-18793768 | Msa0154310:intron | 25.0% |
| ! | GATACCAATTAAATAGTTAG+AGG | - | chr1_4:18794329-18794348 | None:intergenic | 25.0% |
| ! | GAAAGGACTAAATGTATTAA+CGG | - | chr1_4:18793868-18793887 | None:intergenic | 25.0% |
| !!! | GTTTTATTCAAACAAACGTT+AGG | + | chr1_4:18793893-18793912 | Msa0154310:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | - | chr1_4:18794155-18794174 | None:intergenic | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr1_4:18794155-18794174 | Msa0154310:intron | 25.0% |
| ! | AAAAGGACTAAATGTAGTAA+CGG | + | chr1_4:18794254-18794273 | Msa0154310:intron | 25.0% |
| ! | CTATTTAATTGGTATCAGAT+TGG | - | chr1_4:18793797-18793816 | None:intergenic | 25.0% |
| ! | GATACCAATTAAATAGTTAG+AGG | + | chr1_4:18794329-18794348 | Msa0154310:intron | 25.0% |
| ! | TTGTAGTTTGAACATATTGT+TGG | + | chr1_4:18794743-18794762 | Msa0154310:intron | 25.0% |
| !!! | ATTTCATAAGGGTTGATATT+AGG | - | chr1_4:18794820-18794839 | None:intergenic | 25.0% |
| !! | AAATCCATATGTTACTTCTA+AGG | - | chr1_4:18795018-18795037 | None:intergenic | 25.0% |
| ! | AAGAATTTATAAGGACTAGA+AGG | - | chr1_4:18795351-18795370 | None:intergenic | 25.0% |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_4:18792744-18792763 | Msa0154310:CDS | 30.0% | |
| ! | TTGATGCACTTTTGATAGAT+AGG | + | chr1_4:18792768-18792787 | Msa0154310:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_4:18792826-18792845 | Msa0154310:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_4:18792833-18792852 | Msa0154310:CDS | 30.0% |
| ! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1_4:18792849-18792868 | Msa0154310:CDS | 30.0% |
| ! | CAGTTTTTGTAGGTATGATA+CGG | + | chr1_4:18792859-18792878 | Msa0154310:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_4:18792955-18792974 | None:intergenic | 30.0% | |
| TCATTGTTTACTAATCTCTC+CGG | + | chr1_4:18793009-18793028 | Msa0154310:intron | 30.0% | |
| !! | TTTTGATTGCTCATATATCC+AGG | + | chr1_4:18793113-18793132 | Msa0154310:intron | 30.0% |
| TCATTGTTTACTAATCTCTC+CGG | + | chr1_4:18793009-18793028 | Msa0154310:intron | 30.0% | |
| ! | TCATTGTTTTCTAATCTCTC+CGG | + | chr1_4:18793307-18793326 | Msa0154310:intron | 30.0% |
| TTTAGTATAAATAGAACCGG+AGG | + | chr1_4:18793400-18793419 | Msa0154310:intron | 30.0% | |
| !! | ATTGATCTAATTTGCTCTGA+TGG | + | chr1_4:18793476-18793495 | Msa0154310:intron | 30.0% |
| ATTAACTATTCTCCATGTCA+TGG | + | chr1_4:18793697-18793716 | Msa0154310:intron | 30.0% | |
| AAATAGTTAGAGGACGAAAA+AGG | - | chr1_4:18793783-18793802 | None:intergenic | 30.0% | |
| TCGTCCTCTAACTATTTAAT+TGG | + | chr1_4:18793786-18793805 | Msa0154310:intron | 30.0% | |
| TGGTCCTCTAACTATTTAAT+TGG | - | chr1_4:18794336-18794355 | None:intergenic | 30.0% | |
| AAATAGTTAGAGGACCAAAA+AGG | + | chr1_4:18794339-18794358 | Msa0154310:intron | 30.0% | |
| ! | GATAGGCTTAATTACCTTTT+TGG | - | chr1_4:18794356-18794375 | None:intergenic | 30.0% |
| ! | CAATTTGTATCCCTCTATTT+TGG | + | chr1_4:18794551-18794570 | Msa0154310:intron | 30.0% |
| ATGACTAACAAGTTGTATGT+AGG | + | chr1_4:18794626-18794645 | Msa0154310:intron | 30.0% | |
| TATTGATCTTTACATGTGTG+AGG | - | chr1_4:18794697-18794716 | None:intergenic | 30.0% | |
| !! | ATAAGGGTTGATATTAGGTT+CGG | - | chr1_4:18794815-18794834 | None:intergenic | 30.0% |
| TCTGTGTTCGTATTTCATAA+GGG | - | chr1_4:18794831-18794850 | None:intergenic | 30.0% | |
| CAAACCTTAGAAGTAACATA+TGG | + | chr1_4:18795011-18795030 | Msa0154310:intron | 30.0% | |
| !! | CTATGCTTTTTGTCAATGAA+AGG | + | chr1_4:18795286-18795305 | Msa0154310:intron | 30.0% |
| AGGACTACAACAAAACTATA+AGG | + | chr1_4:18795470-18795489 | Msa0154310:intron | 30.0% | |
| GTATTGTTAGATCTCAATTG+AGG | + | chr1_4:18795616-18795635 | Msa0154310:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_4:18795655-18795674 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_4:18795655-18795674 | Msa0154310:CDS | 30.0% | |
| AACCAAATGAATCTGTTGAA+AGG | + | chr1_4:18795702-18795721 | Msa0154310:CDS | 30.0% | |
| ACCAAATGAATCTGTTGAAA+GGG | + | chr1_4:18795703-18795722 | Msa0154310:CDS | 30.0% | |
| AAACTAGAGATAGATCTCAT+AGG | - | chr1_4:18795761-18795780 | None:intergenic | 30.0% | |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_4:18792749-18792768 | None:intergenic | 35.0% |
| ! | GCACTTTTGATAGATAGGTT+TGG | + | chr1_4:18792773-18792792 | Msa0154310:CDS | 35.0% |
| ATCTCATTCACTTCATCGAA+AGG | + | chr1_4:18792883-18792902 | Msa0154310:CDS | 35.0% | |
| AAAGTAGAGAGAAAAGAACC+TGG | - | chr1_4:18792985-18793004 | None:intergenic | 35.0% | |
| ATTAACGGTGAGAAACTTAG+AGG | - | chr1_4:18793853-18793872 | None:intergenic | 35.0% | |
| ACGTTAGGGTTTGTATTAAG+TGG | + | chr1_4:18793908-18793927 | Msa0154310:intron | 35.0% | |
| CGTTAGGGTTTGTATTAAGT+GGG | + | chr1_4:18793909-18793928 | Msa0154310:intron | 35.0% | |
| ATAATACCTTAACAAGGCAG+AGG | - | chr1_4:18793968-18793987 | None:intergenic | 35.0% | |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr1_4:18794159-18794178 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr1_4:18794158-18794177 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr1_4:18794158-18794177 | Msa0154310:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr1_4:18794159-18794178 | Msa0154310:intron | 35.0% |
| AGTAACGGTGAGAAACTTAA+AGG | + | chr1_4:18794269-18794288 | Msa0154310:intron | 35.0% | |
| CGCTATGATACCAAAATAGA+GGG | - | chr1_4:18794564-18794583 | None:intergenic | 35.0% | |
| TCGCTATGATACCAAAATAG+AGG | - | chr1_4:18794565-18794584 | None:intergenic | 35.0% | |
| GTCTGTGTTCGTATTTCATA+AGG | - | chr1_4:18794832-18794851 | None:intergenic | 35.0% | |
| ATCAGTGTTTGTGTTGTGTT+TGG | - | chr1_4:18794862-18794881 | None:intergenic | 35.0% | |
| !! | TATATGTATCGGTGTTGTGT+CGG | + | chr1_4:18794932-18794951 | Msa0154310:intron | 35.0% |
| CACGTTGTAAGTACAAAGTT+AGG | - | chr1_4:18795063-18795082 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_4:18795231-18795250 | Msa0154310:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_4:18795242-18795261 | None:intergenic | 35.0% | |
| ACCCTTTCAACAGATTCATT+TGG | - | chr1_4:18795707-18795726 | None:intergenic | 35.0% | |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_4:18792731-18792750 | Msa0154310:CDS | 40.0% | |
| AAACCATCAAGACCATGACA+TGG | - | chr1_4:18793712-18793731 | None:intergenic | 40.0% | |
| ! | GAGTACAAATTTTCCGAGTC+TGG | + | chr1_4:18794181-18794200 | Msa0154310:intron | 40.0% |
| TCATAACGATTTGCCAGACT+CGG | - | chr1_4:18794197-18794216 | None:intergenic | 40.0% | |
| !! | CTTCTAAGGTTTGATCTACG+AGG | - | chr1_4:18795004-18795023 | None:intergenic | 40.0% |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_4:18795141-18795160 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_4:18795160-18795179 | Msa0154310:CDS | 40.0% | |
| GGTGGAATTTGTGAAGAATG+TGG | + | chr1_4:18795181-18795200 | Msa0154310:CDS | 40.0% | |
| TAGATCTCAATTGAGGAGCT+TGG | + | chr1_4:18795623-18795642 | Msa0154310:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_4:18795667-18795686 | None:intergenic | 40.0% |
| ! | TCTCCATGTCATGGTCTTGA+TGG | + | chr1_4:18793706-18793725 | Msa0154310:intron | 45.0% |
| ! | TTTGGTCCTCTGCCTTGTTA+AGG | + | chr1_4:18793959-18793978 | Msa0154310:intron | 45.0% |
| TGGTTCATATGTACTCCCTC+CGG | + | chr1_4:18794023-18794042 | Msa0154310:intron | 45.0% | |
| CGGAAAATTTGTACTCCCTC+CGG | - | chr1_4:18794177-18794196 | None:intergenic | 45.0% | |
| TACGAGGCACAGAAACTCTT+CGG | - | chr1_4:18794988-18795007 | None:intergenic | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_4:18795140-18795159 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+TGG | + | chr1_4:18795163-18795182 | Msa0154310:CDS | 45.0% | |
| !! | TGAATCTCAGAAAGCGTCCA+AGG | + | chr1_4:18795726-18795745 | Msa0154310:CDS | 45.0% |
| !!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1_4:18795746-18795765 | None:intergenic | 45.0% |
| TCTTCGGATTCAACGTGTCC+TGG | - | chr1_4:18794972-18794991 | None:intergenic | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_4:18795139-18795158 | None:intergenic | 50.0% | |
| !! | TCGGTGTCAGACACGACACC+AGG | + | chr1_4:18794951-18794970 | Msa0154310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 18792728 | 18795918 | 18792728 | ID=Msa0154310;Name=Msa0154310 |
| chr1_4 | mRNA | 18792728 | 18795918 | 18792728 | ID=Msa0154310-mRNA-1;Parent=Msa0154310;Name=Msa0154310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.66|1|0.5|0.66|3|122|175 |
| chr1_4 | exon | 18792728 | 18792928 | 18792728 | ID=Msa0154310-mRNA-1:exon:6900;Parent=Msa0154310-mRNA-1 |
| chr1_4 | exon | 18795097 | 18795252 | 18795097 | ID=Msa0154310-mRNA-1:exon:6901;Parent=Msa0154310-mRNA-1 |
| chr1_4 | exon | 18795626 | 18795918 | 18795626 | ID=Msa0154310-mRNA-1:exon:6902;Parent=Msa0154310-mRNA-1 |
| chr1_4 | CDS | 18792728 | 18792928 | 18792728 | ID=Msa0154310-mRNA-1:cds;Parent=Msa0154310-mRNA-1 |
| chr1_4 | CDS | 18795097 | 18795252 | 18795097 | ID=Msa0154310-mRNA-1:cds;Parent=Msa0154310-mRNA-1 |
| chr1_4 | CDS | 18795626 | 18795796 | 18795626 | ID=Msa0154310-mRNA-1:cds;Parent=Msa0154310-mRNA-1 |
| chr1_4 | three_prime_UTR | 18795797 | 18795918 | 18795797 | ID=Msa0154310-mRNA-1:three_prime_utr;Parent=Msa0154310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
