Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154350 | RHN78372.1 | 89.037 | 301 | 15 | 1 | 1 | 301 | 1 | 283 | 0.0 | 563 |
| Msa0154350 | RHN78372.1 | 89.764 | 254 | 26 | 0 | 410 | 663 | 281 | 534 | 1.39e-157 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154350 | sp|Q336N8|JM706_ORYSJ | 56.402 | 328 | 138 | 1 | 6 | 333 | 101 | 423 | 1.16e-120 | 383 |
| Msa0154350 | sp|Q336N8|JM706_ORYSJ | 37.853 | 177 | 99 | 5 | 410 | 580 | 394 | 565 | 3.61e-29 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154350 | A0A396JLW8 | 89.037 | 301 | 15 | 1 | 1 | 301 | 1 | 283 | 0.0 | 563 |
| Msa0154350 | A0A396JLW8 | 89.764 | 254 | 26 | 0 | 410 | 663 | 281 | 534 | 6.62e-158 | 476 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0154350 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154350 | MtrunA17_Chr1g0164761 | 89.037 | 301 | 15 | 1 | 1 | 301 | 1 | 283 | 0.0 | 563 |
| Msa0154350 | MtrunA17_Chr1g0164761 | 89.764 | 254 | 26 | 0 | 410 | 663 | 281 | 534 | 1.27e-161 | 476 |
| Msa0154350 | MtrunA17_Chr1g0164731 | 84.000 | 300 | 48 | 0 | 2 | 301 | 39 | 338 | 0.0 | 544 |
| Msa0154350 | MtrunA17_Chr1g0164731 | 67.188 | 256 | 56 | 3 | 410 | 663 | 336 | 565 | 6.31e-100 | 318 |
| Msa0154350 | MtrunA17_Chr5g0410721 | 55.723 | 332 | 142 | 1 | 2 | 333 | 83 | 409 | 5.94e-125 | 391 |
| Msa0154350 | MtrunA17_Chr5g0410721 | 40.796 | 201 | 112 | 3 | 410 | 604 | 380 | 579 | 2.26e-41 | 161 |
| Msa0154350 | MtrunA17_Chr3g0116441 | 38.095 | 315 | 159 | 8 | 8 | 301 | 18 | 317 | 2.39e-55 | 205 |
| Msa0154350 | MtrunA17_Chr7g0214951 | 76.667 | 120 | 10 | 2 | 181 | 299 | 99 | 201 | 5.98e-54 | 184 |
| Msa0154350 | MtrunA17_Chr8g0380981 | 33.973 | 365 | 168 | 8 | 4 | 303 | 39 | 395 | 5.58e-47 | 179 |
| Msa0154350 | MtrunA17_Chr1g0189211 | 30.919 | 359 | 178 | 7 | 6 | 301 | 148 | 499 | 1.81e-41 | 162 |
| Msa0154350 | MtrunA17_Chr1g0199511 | 46.309 | 149 | 76 | 1 | 152 | 300 | 291 | 435 | 1.71e-38 | 154 |
| Msa0154350 | MtrunA17_Chr5g0397501 | 42.788 | 208 | 91 | 7 | 109 | 297 | 323 | 521 | 1.43e-35 | 144 |
| Msa0154350 | MtrunA17_Chr2g0303101 | 43.258 | 178 | 84 | 4 | 134 | 301 | 232 | 402 | 4.45e-34 | 139 |
| Msa0154350 | MtrunA17_Chr7g0214941 | 77.027 | 74 | 17 | 0 | 579 | 652 | 1 | 74 | 6.82e-30 | 112 |
| Msa0154350 | MtrunA17_Chr7g0261401 | 33.784 | 148 | 94 | 1 | 156 | 303 | 338 | 481 | 2.57e-18 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154350 | AT5G46910.2 | 59.864 | 294 | 118 | 0 | 7 | 300 | 102 | 395 | 1.87e-122 | 379 |
| Msa0154350 | AT5G46910.2 | 45.652 | 184 | 95 | 5 | 410 | 590 | 394 | 575 | 2.86e-43 | 166 |
| Msa0154350 | AT5G46910.1 | 59.661 | 295 | 119 | 0 | 7 | 301 | 102 | 396 | 7.12e-121 | 379 |
| Msa0154350 | AT5G46910.1 | 45.652 | 184 | 95 | 5 | 410 | 590 | 394 | 575 | 3.90e-43 | 167 |
| Msa0154350 | AT3G48430.1 | 35.045 | 331 | 171 | 8 | 8 | 300 | 20 | 344 | 5.81e-50 | 189 |
| Msa0154350 | AT2G34880.1 | 34.463 | 354 | 167 | 9 | 7 | 303 | 60 | 405 | 9.01e-46 | 175 |
| Msa0154350 | AT1G30810.3 | 31.933 | 357 | 176 | 8 | 4 | 301 | 55 | 403 | 5.72e-44 | 169 |
| Msa0154350 | AT1G30810.2 | 31.933 | 357 | 176 | 8 | 4 | 301 | 55 | 403 | 5.72e-44 | 169 |
| Msa0154350 | AT1G30810.1 | 31.933 | 357 | 176 | 8 | 4 | 301 | 55 | 403 | 5.72e-44 | 169 |
| Msa0154350 | AT4G20400.1 | 30.685 | 365 | 175 | 9 | 4 | 301 | 52 | 405 | 2.01e-43 | 169 |
| Msa0154350 | AT4G20400.2 | 30.986 | 355 | 167 | 9 | 16 | 303 | 7 | 350 | 1.57e-40 | 159 |
| Msa0154350 | AT1G63490.1 | 31.733 | 375 | 200 | 13 | 93 | 438 | 52 | 399 | 5.70e-40 | 158 |
| Msa0154350 | AT1G63490.2 | 31.733 | 375 | 200 | 13 | 93 | 438 | 305 | 652 | 7.17e-40 | 158 |
| Msa0154350 | AT1G63490.4 | 31.733 | 375 | 200 | 13 | 93 | 438 | 305 | 652 | 7.37e-40 | 158 |
| Msa0154350 | AT5G04240.1 | 39.171 | 217 | 113 | 3 | 152 | 357 | 259 | 467 | 4.25e-39 | 155 |
| Msa0154350 | AT1G08620.2 | 39.394 | 198 | 100 | 4 | 117 | 301 | 313 | 503 | 8.71e-34 | 139 |
| Msa0154350 | AT1G08620.4 | 39.394 | 198 | 100 | 4 | 117 | 301 | 313 | 503 | 8.71e-34 | 139 |
| Msa0154350 | AT1G08620.1 | 39.394 | 198 | 100 | 4 | 117 | 301 | 313 | 503 | 8.71e-34 | 139 |
| Msa0154350 | AT1G08620.3 | 39.394 | 198 | 100 | 4 | 117 | 301 | 327 | 517 | 9.34e-34 | 139 |
| Msa0154350 | AT2G38950.1 | 26.608 | 342 | 194 | 12 | 2 | 300 | 102 | 429 | 2.06e-22 | 102 |
Find 99 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAATTACCTTTCAATT+TGG | 0.172634 | 1_4:+18868719 | None:intergenic |
| AGCTATCACTTCTTCAATTC+TGG | 0.191859 | 1_4:+18867906 | None:intergenic |
| ACACAATTGTACAGCCTCTT+AGG | 0.195974 | 1_4:-18870469 | Msa0154350:CDS |
| TTTATTCTGAAATATGTTAT+TGG | 0.210610 | 1_4:-18866283 | Msa0154350:three_prime_UTR |
| GAAATTACCTTTCAATCTTA+TGG | 0.213830 | 1_4:+18868878 | None:intergenic |
| TGACATGCAGCCTCTGCTTT+AGG | 0.237204 | 1_4:-18867148 | Msa0154350:CDS |
| TTCTTTACCGCAAAATCTAT+TGG | 0.253886 | 1_4:+18870259 | None:intergenic |
| AATCCAGCATGATATGAATT+TGG | 0.254423 | 1_4:+18869363 | None:intergenic |
| GCTCCTGAGGCTTCTAAATA+TGG | 0.264118 | 1_4:-18870949 | Msa0154350:intron |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1_4:-18870504 | Msa0154350:CDS |
| AGCTCGATCCGACGTGTCTT+CGG | 0.278857 | 1_4:+18867277 | None:intergenic |
| TCAATTCTGGGAACTTTAAC+AGG | 0.282085 | 1_4:+18867919 | None:intergenic |
| GACATGCAGCCTCTGCTTTA+GGG | 0.297262 | 1_4:-18867147 | Msa0154350:CDS |
| CAAATTGAAAGGTAATTTCT+TGG | 0.302255 | 1_4:-18868718 | Msa0154350:intron |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1_4:+18867362 | None:intergenic |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1_4:-18870182 | Msa0154350:CDS |
| ACTGAAAGCAGAATAATAAT+TGG | 0.325763 | 1_4:-18866629 | Msa0154350:intron |
| GCTCGATCCGACGTGTCTTC+GGG | 0.342360 | 1_4:+18867278 | None:intergenic |
| AGCTATTCAAATACATCATT+AGG | 0.343820 | 1_4:-18867176 | Msa0154350:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1_4:+18867353 | None:intergenic |
| CTTATGGTTTGTAGCCTTGT+AGG | 0.346162 | 1_4:+18868894 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1_4:+18867080 | None:intergenic |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1_4:-18870108 | Msa0154350:intron |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1_4:-18867436 | Msa0154350:CDS |
| CTCCATTGCGTTTAGTTGAC+AGG | 0.390855 | 1_4:-18869897 | Msa0154350:CDS |
| GACAAAAGAAGCAGGATTAG+AGG | 0.392437 | 1_4:+18870523 | None:intergenic |
| TTTGATTTGAAAACCCTAAG+AGG | 0.423006 | 1_4:+18870455 | None:intergenic |
| AATTACCTTTCAATTTGGAT+TGG | 0.424897 | 1_4:+18868724 | None:intergenic |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1_4:-18869770 | Msa0154350:CDS |
| TCAATTTGAAAAGACTGTCT+TGG | 0.425142 | 1_4:-18869547 | Msa0154350:CDS |
| TGTTCTGATGGATAATAAGT+TGG | 0.426588 | 1_4:+18871009 | None:intergenic |
| GCTATCACTTCTTCAATTCT+GGG | 0.432679 | 1_4:+18867907 | None:intergenic |
| CACAATTGTACAGCCTCTTA+GGG | 0.435355 | 1_4:-18870468 | Msa0154350:CDS |
| AAATAGAGTCAACAAGGAAA+AGG | 0.438827 | 1_4:+18868749 | None:intergenic |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1_4:+18870125 | None:intergenic |
| TTGGTGATTGGTTTCCACTC+GGG | 0.449709 | 1_4:-18867424 | Msa0154350:CDS |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1_4:-18867443 | Msa0154350:CDS |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1_4:-18867366 | Msa0154350:CDS |
| TATCATCTTACTTGCATGAC+AGG | 0.473166 | 1_4:-18866420 | Msa0154350:CDS |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1_4:+18870997 | None:intergenic |
| TTACCATATTTAGAAGCCTC+AGG | 0.481047 | 1_4:+18870946 | None:intergenic |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1_4:-18869405 | Msa0154350:CDS |
| ATGAGGTCTTACCATGGAAA+AGG | 0.484485 | 1_4:+18867072 | None:intergenic |
| ACATAATGTGCCGGTTTACA+AGG | 0.487938 | 1_4:-18869421 | Msa0154350:CDS |
| GTGCCACAAAATTGTTTATG+TGG | 0.488853 | 1_4:-18866960 | Msa0154350:CDS |
| ATTTGAAGCTCTTGCAAACA+AGG | 0.496352 | 1_4:-18870288 | Msa0154350:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1_4:-18869366 | Msa0154350:CDS |
| GACAACATACTGTATTTAAG+AGG | 0.498182 | 1_4:-18866935 | Msa0154350:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1_4:+18870139 | None:intergenic |
| GAAATAATACATGGAGAGAA+AGG | 0.501914 | 1_4:-18870197 | Msa0154350:CDS |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1_4:-18869591 | Msa0154350:CDS |
| ATTGGTGATTGGTTTCCACT+CGG | 0.503752 | 1_4:-18867425 | Msa0154350:CDS |
| GCAATATACAACAATTTCAA+AGG | 0.507304 | 1_4:-18866315 | Msa0154350:three_prime_UTR |
| TACAACTCCTCAAAAGATAG+AGG | 0.507371 | 1_4:-18867314 | Msa0154350:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1_4:-18869771 | Msa0154350:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1_4:-18870131 | Msa0154350:CDS |
| TAGAAGAACTGTTAACTCGC+TGG | 0.517692 | 1_4:-18866589 | Msa0154350:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1_4:-18869746 | Msa0154350:CDS |
| TGGTGATTGGTTTCCACTCG+GGG | 0.519820 | 1_4:-18867423 | Msa0154350:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1_4:-18869719 | Msa0154350:intron |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1_4:+18870515 | None:intergenic |
| AATAGAGTCAACAAGGAAAA+GGG | 0.523784 | 1_4:+18868750 | None:intergenic |
| TCTCATTCAGGGATGAATCA+AGG | 0.528876 | 1_4:-18868776 | Msa0154350:intron |
| AATTGAGAGGATGCAGAACT+AGG | 0.531709 | 1_4:+18869564 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1_4:-18869596 | Msa0154350:CDS |
| AACTACATACCTACAGGTTG+AGG | 0.537982 | 1_4:+18867877 | None:intergenic |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1_4:+18869438 | None:intergenic |
| GCTATGTGTAACAAAAGAAG+AGG | 0.541943 | 1_4:+18868975 | None:intergenic |
| AGAAGAACTGTTAACTCGCT+GGG | 0.543377 | 1_4:-18866588 | Msa0154350:CDS |
| TATGCAGAAAATTGCTCCTG+AGG | 0.544690 | 1_4:-18870962 | Msa0154350:CDS |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1_4:-18869430 | Msa0154350:CDS |
| AAGGTGATGACAAACTCTCC+TGG | 0.548617 | 1_4:+18869387 | None:intergenic |
| CTACAAACCATAAGATTGAA+AGG | 0.554152 | 1_4:-18868885 | Msa0154350:intron |
| GCAGGATTAGAGGCAGCGAT+TGG | 0.560174 | 1_4:+18870533 | None:intergenic |
| TTTATAAGACATCATTATCA+CGG | 0.560917 | 1_4:-18867223 | Msa0154350:CDS |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1_4:+18869449 | None:intergenic |
| TGCCACAAAATTGTTTATGT+GGG | 0.576308 | 1_4:-18866959 | Msa0154350:CDS |
| TTCCTGTCAACTAAACGCAA+TGG | 0.577093 | 1_4:+18869895 | None:intergenic |
| AACAAAGTCTTCACAGAACA+TGG | 0.579374 | 1_4:-18869510 | Msa0154350:CDS |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1_4:-18869354 | Msa0154350:intron |
| TTCTGGCACGAAATAATACA+TGG | 0.588933 | 1_4:-18870206 | Msa0154350:CDS |
| GAAAGGCAATGTTCAGATTG+TGG | 0.589806 | 1_4:-18866398 | Msa0154350:CDS |
| TCTTACTTGCATGACAGGAA+AGG | 0.606370 | 1_4:-18866415 | Msa0154350:CDS |
| TTCCTCTGTTACGACCTACA+AGG | 0.610235 | 1_4:-18868908 | Msa0154350:CDS |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1_4:+18869765 | None:intergenic |
| TCGCTAGCTGCAGCCCCGAG+TGG | 0.621053 | 1_4:+18867410 | None:intergenic |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1_4:-18869612 | Msa0154350:CDS |
| GTAGAAGTTTCACTCTCACA+AGG | 0.633517 | 1_4:+18867949 | None:intergenic |
| AGCATGATATGAATTTGGAA+AGG | 0.636839 | 1_4:+18869368 | None:intergenic |
| GCTTCTACACCTCAACCTGT+AGG | 0.645954 | 1_4:-18867886 | Msa0154350:intron |
| CATAACAATCCCTAAAGCAG+AGG | 0.654524 | 1_4:+18867138 | None:intergenic |
| GTAACAGAGGAAGTCAGAAG+AGG | 0.657080 | 1_4:+18868919 | None:intergenic |
| AATCAAACCCGAAGACACGT+CGG | 0.661309 | 1_4:-18867285 | Msa0154350:CDS |
| TGAATATATCAAAGAACACA+AGG | 0.662208 | 1_4:-18866811 | Msa0154350:intron |
| TGACATGTTAGAACTCGAAG+AGG | 0.675718 | 1_4:-18866910 | Msa0154350:CDS |
| ACTAAACGCAATGGAGACTG+TGG | 0.698121 | 1_4:+18869904 | None:intergenic |
| TAATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1_4:-18869418 | Msa0154350:CDS |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1_4:-18870168 | Msa0154350:CDS |
| AGCCTTGTAGGTCGTAACAG+AGG | 0.729728 | 1_4:+18868906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATTTAAAATTAT+AGG | - | chr1_4:18867434-18867453 | Msa0154350:CDS | 0.0% |
| !!! | TAATTTTATTTAAAATTATA+GGG | - | chr1_4:18867435-18867454 | Msa0154350:CDS | 0.0% |
| !!! | AAAAAAAATTATTTTTTTTT+GGG | + | chr1_4:18868167-18868186 | None:intergenic | 0.0% |
| !!! | AAAAAAAAATTATTTTTTTT+TGG | + | chr1_4:18868168-18868187 | None:intergenic | 0.0% |
| !!! | AAAAAATTATTTTTTTTTGG+GGG | + | chr1_4:18868165-18868184 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTTAGAATTTAA+AGG | - | chr1_4:18868553-18868572 | Msa0154350:intron | 10.0% |
| !!! | TATTCAAAATTGTTTATTTT+TGG | - | chr1_4:18868764-18868783 | Msa0154350:CDS | 10.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | - | chr1_4:18866658-18866677 | Msa0154350:intron | 15.0% |
| !! | TGATGAAAAATTAAATAACT+TGG | - | chr1_4:18866885-18866904 | Msa0154350:CDS | 15.0% |
| !!! | AAATTCTAAAATCAAATGAA+AGG | + | chr1_4:18867299-18867318 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTAATTCAGATT+AGG | + | chr1_4:18867392-18867411 | None:intergenic | 15.0% |
| !!! | TCATTATTTTGAATTCATTA+AGG | - | chr1_4:18870896-18870915 | Msa0154350:intron | 15.0% |
| !!! | TTTATTCTGAAATATGTTAT+TGG | - | chr1_4:18870950-18870969 | Msa0154350:CDS | 15.0% |
| !!! | ATTTTCTGCATATAAACTAA+AGG | + | chr1_4:18866263-18866282 | None:intergenic | 20.0% |
| !! | ATAACGATGTAATCTAATAT+AGG | - | chr1_4:18866561-18866580 | Msa0154350:CDS | 20.0% |
| !!! | TTTGATTTTAGAATTTGAAG+CGG | - | chr1_4:18867303-18867322 | Msa0154350:CDS | 20.0% |
| !!! | TGGATATTGCTTATATTTTA+CGG | - | chr1_4:18867996-18868015 | Msa0154350:CDS | 20.0% |
| !!! | TTGAAACTACTATGTTATTT+TGG | - | chr1_4:18868730-18868749 | Msa0154350:CDS | 20.0% |
| !! | ATCAATACAATATATGTGTA+AGG | - | chr1_4:18868860-18868879 | Msa0154350:intron | 20.0% |
| !!! | TGTTTCTAGATTAATTTGTA+AGG | - | chr1_4:18868919-18868938 | Msa0154350:CDS | 20.0% |
| !! | AATTGAAGAAATTACATAAC+AGG | - | chr1_4:18869075-18869094 | Msa0154350:intron | 20.0% |
| !!! | TGTTTTTTTGAAGAATAGAA+AGG | - | chr1_4:18869211-18869230 | Msa0154350:intron | 20.0% |
| !!! | TATATTAGAGTATATTTTGC+TGG | - | chr1_4:18869438-18869457 | Msa0154350:CDS | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | + | chr1_4:18869667-18869686 | None:intergenic | 20.0% |
| !! | TTTATAAGACATCATTATCA+CGG | - | chr1_4:18870010-18870029 | Msa0154350:intron | 20.0% |
| !! | AATAGTCAAATAGAATAATG+AGG | + | chr1_4:18870181-18870200 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTCGTTGTCTTT+TGG | + | chr1_4:18870787-18870806 | None:intergenic | 20.0% |
| ! | ATAAAAAAACCCTAGAAACA+CGG | + | chr1_4:18866345-18866364 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTAAGAGAAGA+AGG | - | chr1_4:18866815-18866834 | Msa0154350:CDS | 25.0% |
| !!! | TAGATATTGAAAAAGTGTTC+TGG | - | chr1_4:18867010-18867029 | Msa0154350:intron | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | - | chr1_4:18867125-18867144 | Msa0154350:CDS | 25.0% |
| ! | AGTCTATTAATCTTTACTTG+TGG | - | chr1_4:18867234-18867253 | Msa0154350:CDS | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | + | chr1_4:18867764-18867783 | None:intergenic | 25.0% |
| !! | CTTATATTTTACGGATAAGT+AGG | - | chr1_4:18868005-18868024 | Msa0154350:CDS | 25.0% |
| !!! | AATTATTTTTTTTTGGGGGT+GGG | + | chr1_4:18868161-18868180 | None:intergenic | 25.0% |
| !!! | AAATTATTTTTTTTTGGGGG+TGG | + | chr1_4:18868162-18868181 | None:intergenic | 25.0% |
| !! | CATATTGTATTTTTCTCAAG+TGG | - | chr1_4:18868218-18868237 | Msa0154350:intron | 25.0% |
| ! | GAAATTACCTTTCAATCTTA+TGG | + | chr1_4:18868358-18868377 | None:intergenic | 25.0% |
| !! | TTTTTCCAATCCAAATTGAA+AGG | - | chr1_4:18868504-18868523 | Msa0154350:intron | 25.0% |
| ! | AATTACCTTTCAATTTGGAT+TGG | + | chr1_4:18868512-18868531 | None:intergenic | 25.0% |
| ! | CAAGAAATTACCTTTCAATT+TGG | + | chr1_4:18868517-18868536 | None:intergenic | 25.0% |
| ! | CAAATTGAAAGGTAATTTCT+TGG | - | chr1_4:18868515-18868534 | Msa0154350:intron | 25.0% |
| !! | AAGCCTTAATTTGGATAAAA+AGG | + | chr1_4:18868886-18868905 | None:intergenic | 25.0% |
| ! | TTAATCTAGAAACAACATCA+CGG | + | chr1_4:18868913-18868932 | None:intergenic | 25.0% |
| ! | ATACATTAAGATATGAACCT+AGG | + | chr1_4:18868945-18868964 | None:intergenic | 25.0% |
| !! | GTATATATAGCTGTCAATTT+TGG | - | chr1_4:18869163-18869182 | Msa0154350:intron | 25.0% |
| !!! | TTTGGATTGTTATTGACTTA+TGG | - | chr1_4:18869181-18869200 | Msa0154350:intron | 25.0% |
| !! | ATCATTTTCTTGTTGAGTTT+AGG | - | chr1_4:18869754-18869773 | Msa0154350:CDS | 25.0% |
| ! | AGCTATTCAAATACATCATT+AGG | - | chr1_4:18870057-18870076 | Msa0154350:intron | 25.0% |
| !!! | TAATTTGCTTGTGTTATTGA+TGG | - | chr1_4:18870216-18870235 | Msa0154350:CDS | 25.0% |
| !! | ATGGATAAACTTGCTTATTA+TGG | - | chr1_4:18870235-18870254 | Msa0154350:CDS | 25.0% |
| ! | TGAATATATCAAAGAACACA+AGG | - | chr1_4:18870422-18870441 | Msa0154350:CDS | 25.0% |
| !!! | ACTATTTTAATGAAGTTCAG+AGG | + | chr1_4:18870491-18870510 | None:intergenic | 25.0% |
| ! | ACTGAAAGCAGAATAATAAT+TGG | - | chr1_4:18870604-18870623 | Msa0154350:intron | 25.0% |
| ! | GCAATATACAACAATTTCAA+AGG | - | chr1_4:18870918-18870937 | Msa0154350:intron | 25.0% |
| !!! | ACCATATTTTTTAGCATGTA+AGG | - | chr1_4:18871010-18871029 | Msa0154350:CDS | 25.0% |
| ! | TGTTCTGATGGATAATAAGT+TGG | + | chr1_4:18866227-18866246 | None:intergenic | 30.0% |
| GTAGCATTCTTACTATAGTT+GGG | + | chr1_4:18866408-18866427 | None:intergenic | 30.0% | |
| AGTAGCATTCTTACTATAGT+TGG | + | chr1_4:18866409-18866428 | None:intergenic | 30.0% | |
| !! | GAATGCTACTTACTTTCTTT+TGG | - | chr1_4:18866419-18866438 | Msa0154350:CDS | 30.0% |
| TCCAAAATATAGAATCACAG+TGG | - | chr1_4:18866522-18866541 | Msa0154350:CDS | 30.0% | |
| !! | TTTGATTTGAAAACCCTAAG+AGG | + | chr1_4:18866781-18866800 | None:intergenic | 30.0% |
| ! | GGTTTTCAAATCAAATGAGA+TGG | - | chr1_4:18866786-18866805 | Msa0154350:intron | 30.0% |
| TTCTTTACCGCAAAATCTAT+TGG | + | chr1_4:18866977-18866996 | None:intergenic | 30.0% | |
| GAAATAATACATGGAGAGAA+AGG | - | chr1_4:18867036-18867055 | Msa0154350:intron | 30.0% | |
| TACAAAAATTGCTTCCTTAC+TGG | + | chr1_4:18867368-18867387 | None:intergenic | 30.0% | |
| TAGAAGATCACTATTTGTAC+AGG | - | chr1_4:18867514-18867533 | Msa0154350:intron | 30.0% | |
| TCAATTTGAAAAGACTGTCT+TGG | - | chr1_4:18867686-18867705 | Msa0154350:intron | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | + | chr1_4:18867798-18867817 | None:intergenic | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | + | chr1_4:18867868-18867887 | None:intergenic | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | - | chr1_4:18867867-18867886 | Msa0154350:intron | 30.0% | |
| AATCCAGCATGATATGAATT+TGG | + | chr1_4:18867873-18867892 | None:intergenic | 30.0% | |
| !! | TGGTGTTATTATGTTTCTGA+TGG | - | chr1_4:18867976-18867995 | Msa0154350:CDS | 30.0% |
| TACCTTTCTATTATGCACTA+CGG | + | chr1_4:18868088-18868107 | None:intergenic | 30.0% | |
| GAGAAAAATACAATATGCTG+AGG | + | chr1_4:18868215-18868234 | None:intergenic | 30.0% | |
| CTACAAACCATAAGATTGAA+AGG | - | chr1_4:18868348-18868367 | Msa0154350:intron | 30.0% | |
| GAAAGAAAAAGGATTTGGAT+TGG | + | chr1_4:18868398-18868417 | None:intergenic | 30.0% | |
| AGAGAGAAAGAAAAAGGATT+TGG | + | chr1_4:18868403-18868422 | None:intergenic | 30.0% | |
| AATAGAGTCAACAAGGAAAA+GGG | + | chr1_4:18868486-18868505 | None:intergenic | 30.0% | |
| AAATAGAGTCAACAAGGAAA+AGG | + | chr1_4:18868487-18868506 | None:intergenic | 30.0% | |
| TTGGAAAAATAGAGTCAACA+AGG | + | chr1_4:18868493-18868512 | None:intergenic | 30.0% | |
| ! | TGTTCTTGTTTGTTGATTGT+TGG | - | chr1_4:18868690-18868709 | Msa0154350:intron | 30.0% |
| AAATTAAGGCTGTGGAATTA+AGG | - | chr1_4:18868810-18868829 | Msa0154350:intron | 30.0% | |
| ! | AGGCCTTTTTATCCAAATTA+AGG | - | chr1_4:18868880-18868899 | Msa0154350:intron | 30.0% |
| !! | TAGATTAATTTGTAAGGCCT+AGG | - | chr1_4:18868925-18868944 | Msa0154350:CDS | 30.0% |
| GCATATATGTGTATAAGAGA+TGG | - | chr1_4:18868965-18868984 | Msa0154350:CDS | 30.0% | |
| TTCTTTATATTCAGATGAGC+AGG | - | chr1_4:18869126-18869145 | Msa0154350:intron | 30.0% | |
| !! | CACTTGATCATTTTTACAAG+AGG | - | chr1_4:18869258-18869277 | Msa0154350:intron | 30.0% |
| AAAGTAAACTACATACCTAC+AGG | + | chr1_4:18869365-18869384 | None:intergenic | 30.0% | |
| CGAGATTTAATTATGGAGTT+CGG | + | chr1_4:18869528-18869547 | None:intergenic | 30.0% | |
| ATAAACAGATTACAGAGAAC+AGG | + | chr1_4:18869551-18869570 | None:intergenic | 30.0% | |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | - | chr1_4:18869766-18869785 | Msa0154350:CDS | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | - | chr1_4:18869797-18869816 | Msa0154350:intron | 30.0% |
| AGTTCCTCATATGGAATTAT+AGG | + | chr1_4:18869874-18869893 | None:intergenic | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | + | chr1_4:18869883-18869902 | None:intergenic | 30.0% | |
| ! | TTTGTAACCTCTATCTTTTG+AGG | + | chr1_4:18869929-18869948 | None:intergenic | 30.0% |
| TGCCACAAAATTGTTTATGT+GGG | - | chr1_4:18870274-18870293 | Msa0154350:CDS | 30.0% | |
| GACAACATACTGTATTTAAG+AGG | - | chr1_4:18870298-18870317 | Msa0154350:CDS | 30.0% | |
| ! | CTTTTCCAGTTGAAAACTTT+TGG | + | chr1_4:18870352-18870371 | None:intergenic | 30.0% |
| ! | CAAAAGTTTTCAACTGGAAA+AGG | - | chr1_4:18870350-18870369 | Msa0154350:intron | 30.0% |
| GCCTTACATGCTAAAAAATA+TGG | + | chr1_4:18871014-18871033 | None:intergenic | 30.0% | |
| TTACCATATTTAGAAGCCTC+AGG | + | chr1_4:18866290-18866309 | None:intergenic | 35.0% | |
| ! | GCCACTGTGATTCTATATTT+TGG | + | chr1_4:18866526-18866545 | None:intergenic | 35.0% |
| ACAACAGATTCTGCATTTGT+AGG | - | chr1_4:18866596-18866615 | Msa0154350:CDS | 35.0% | |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | - | chr1_4:18866717-18866736 | Msa0154350:intron | 35.0% |
| TGTCTTAACGGAAGAGAAAA+AGG | - | chr1_4:18866729-18866748 | Msa0154350:intron | 35.0% | |
| ! | ATTTGAAGCTCTTGCAAACA+AGG | - | chr1_4:18866945-18866964 | Msa0154350:CDS | 35.0% |
| ! | GCGTTTTCCAATAGATTTTG+CGG | - | chr1_4:18866967-18866986 | Msa0154350:CDS | 35.0% |
| TTCTGGCACGAAATAATACA+TGG | - | chr1_4:18867027-18867046 | Msa0154350:intron | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | + | chr1_4:18867097-18867116 | None:intergenic | 35.0% | |
| TTGACAGGAAAATTCCAGTA+AGG | - | chr1_4:18867351-18867370 | Msa0154350:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | - | chr1_4:18867462-18867481 | Msa0154350:intron | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | - | chr1_4:18867463-18867482 | Msa0154350:intron | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | - | chr1_4:18867487-18867506 | Msa0154350:intron | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | - | chr1_4:18867621-18867640 | Msa0154350:intron | 35.0% | |
| !! | TTTTATTTGCACCTGAGTGA+TGG | + | chr1_4:18867635-18867654 | None:intergenic | 35.0% |
| ACTCAGGTGCAAATAAAACT+TGG | - | chr1_4:18867637-18867656 | Msa0154350:intron | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | - | chr1_4:18867642-18867661 | Msa0154350:intron | 35.0% | |
| ! | GACAGTCTTTTCAAATTGAG+AGG | + | chr1_4:18867685-18867704 | None:intergenic | 35.0% |
| AACAAAGTCTTCACAGAACA+TGG | - | chr1_4:18867723-18867742 | Msa0154350:intron | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | - | chr1_4:18867803-18867822 | Msa0154350:intron | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | - | chr1_4:18867879-18867898 | Msa0154350:intron | 35.0% | |
| CTCTCTCTCTATAAATGTGT+TGG | - | chr1_4:18867956-18867975 | Msa0154350:CDS | 35.0% | |
| ! | TATTTTACGGATAAGTAGGC+AGG | - | chr1_4:18868009-18868028 | Msa0154350:CDS | 35.0% |
| CAGGTCGATTGAATAATGAA+GGG | - | chr1_4:18868028-18868047 | Msa0154350:intron | 35.0% | |
| ! | TTGAATAATGAAGGGTACGT+AGG | - | chr1_4:18868036-18868055 | Msa0154350:intron | 35.0% |
| AAAAGAAGAGGAAAAGTCTG+GGG | + | chr1_4:18868249-18868268 | None:intergenic | 35.0% | |
| CAAAAGAAGAGGAAAAGTCT+GGG | + | chr1_4:18868250-18868269 | None:intergenic | 35.0% | |
| ACAAAAGAAGAGGAAAAGTC+TGG | + | chr1_4:18868251-18868270 | None:intergenic | 35.0% | |
| GCTATGTGTAACAAAAGAAG+AGG | + | chr1_4:18868261-18868280 | None:intergenic | 35.0% | |
| !! | TTGCTGTTTGCTACTAAGAT+TGG | - | chr1_4:18868594-18868613 | Msa0154350:intron | 35.0% |
| ! | GTTTGTTGATTGTTGGTACT+TGG | - | chr1_4:18868697-18868716 | Msa0154350:intron | 35.0% |
| TGTTCCGTGAATGCAAATTA+AGG | - | chr1_4:18868796-18868815 | Msa0154350:intron | 35.0% | |
| !! | ACAGCCTTAATTTGCATTCA+CGG | + | chr1_4:18868803-18868822 | None:intergenic | 35.0% |
| CACGGTATTAAGCCTTAATT+TGG | + | chr1_4:18868895-18868914 | None:intergenic | 35.0% | |
| ! | TCAATTCTGGGAACTTTAAC+AGG | + | chr1_4:18869317-18869336 | None:intergenic | 35.0% |
| GCTATCACTTCTTCAATTCT+GGG | + | chr1_4:18869329-18869348 | None:intergenic | 35.0% | |
| AGCTATCACTTCTTCAATTC+TGG | + | chr1_4:18869330-18869349 | None:intergenic | 35.0% | |
| GAACAGGCGAGATTTAATTA+TGG | + | chr1_4:18869535-18869554 | None:intergenic | 35.0% | |
| GCAGTAACTATTAGAACTTC+AGG | + | chr1_4:18869586-18869605 | None:intergenic | 35.0% | |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | - | chr1_4:18869790-18869809 | Msa0154350:intron | 35.0% |
| GCTACCTATAATTCCATATG+AGG | - | chr1_4:18869867-18869886 | Msa0154350:intron | 35.0% | |
| TACAACTCCTCAAAAGATAG+AGG | - | chr1_4:18869919-18869938 | Msa0154350:CDS | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | + | chr1_4:18870156-18870175 | None:intergenic | 35.0% | |
| AGAATAATGAGGTCTTACCA+TGG | + | chr1_4:18870170-18870189 | None:intergenic | 35.0% | |
| GTGCCACAAAATTGTTTATG+TGG | - | chr1_4:18870273-18870292 | Msa0154350:CDS | 35.0% | |
| ! | CTCCCACATAAACAATTTTG+TGG | + | chr1_4:18870279-18870298 | None:intergenic | 35.0% |
| GTATGCATTGCTTTATCTTC+AGG | - | chr1_4:18870535-18870554 | Msa0154350:CDS | 35.0% | |
| TATCATCTTACTTGCATGAC+AGG | - | chr1_4:18870813-18870832 | Msa0154350:intron | 35.0% | |
| TGCTCAAACTCTTGTTCTGA+TGG | + | chr1_4:18866239-18866258 | None:intergenic | 40.0% | |
| TATGCAGAAAATTGCTCCTG+AGG | - | chr1_4:18866271-18866290 | Msa0154350:three_prime_UTR | 40.0% | |
| CGCGTGCATGTTTAGATTAA+CGG | - | chr1_4:18866466-18866485 | Msa0154350:CDS | 40.0% | |
| GACAAAAGAAGCAGGATTAG+AGG | + | chr1_4:18866713-18866732 | None:intergenic | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | + | chr1_4:18866721-18866740 | None:intergenic | 40.0% | |
| ACACAATTGTACAGCCTCTT+AGG | - | chr1_4:18866764-18866783 | Msa0154350:intron | 40.0% | |
| CACAATTGTACAGCCTCTTA+GGG | - | chr1_4:18866765-18866784 | Msa0154350:intron | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | - | chr1_4:18867051-18867070 | Msa0154350:intron | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | - | chr1_4:18867065-18867084 | Msa0154350:intron | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | - | chr1_4:18867102-18867121 | Msa0154350:CDS | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | + | chr1_4:18867111-18867130 | None:intergenic | 40.0% | |
| TTCCTGTCAACTAAACGCAA+TGG | + | chr1_4:18867341-18867360 | None:intergenic | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | + | chr1_4:18867471-18867490 | None:intergenic | 40.0% | |
| AATTGAGAGGATGCAGAACT+AGG | + | chr1_4:18867672-18867691 | None:intergenic | 40.0% | |
| !! | ACATAATGTGCCGGTTTACA+AGG | - | chr1_4:18867812-18867831 | Msa0154350:intron | 40.0% |
| GCAGGTCGATTGAATAATGA+AGG | - | chr1_4:18868027-18868046 | Msa0154350:intron | 40.0% | |
| GACCGTAGTGCATAATAGAA+AGG | - | chr1_4:18868083-18868102 | Msa0154350:intron | 40.0% | |
| AAAGAAGAGGAAAAGTCTGG+GGG | + | chr1_4:18868248-18868267 | None:intergenic | 40.0% | |
| !! | CTTATGGTTTGTAGCCTTGT+AGG | + | chr1_4:18868342-18868361 | None:intergenic | 40.0% |
| CGCGTAAGAGAGAAAGAAAA+AGG | + | chr1_4:18868409-18868428 | None:intergenic | 40.0% | |
| GAAAGAGAAAACACGTGAGT+AGG | + | chr1_4:18868433-18868452 | None:intergenic | 40.0% | |
| TCTCTTTCTGTCTCTCATTC+AGG | - | chr1_4:18868445-18868464 | Msa0154350:intron | 40.0% | |
| CTCTTTCTGTCTCTCATTCA+GGG | - | chr1_4:18868446-18868465 | Msa0154350:intron | 40.0% | |
| TCTCATTCAGGGATGAATCA+AGG | - | chr1_4:18868457-18868476 | Msa0154350:intron | 40.0% | |
| GTGAATGCAAATTAAGGCTG+TGG | - | chr1_4:18868802-18868821 | Msa0154350:intron | 40.0% | |
| GTAGAAGTTTCACTCTCACA+AGG | + | chr1_4:18869287-18869306 | None:intergenic | 40.0% | |
| AACTACATACCTACAGGTTG+AGG | + | chr1_4:18869359-18869378 | None:intergenic | 40.0% | |
| CTAGAAAAAATATCGGGGGT+GGG | + | chr1_4:18869464-18869483 | None:intergenic | 40.0% | |
| GGAGCTAGAAAAAATATCGG+GGG | + | chr1_4:18869468-18869487 | None:intergenic | 40.0% | |
| CGGAGCTAGAAAAAATATCG+GGG | + | chr1_4:18869469-18869488 | None:intergenic | 40.0% | |
| GCGGAGCTAGAAAAAATATC+GGG | + | chr1_4:18869470-18869489 | None:intergenic | 40.0% | |
| GGCGGAGCTAGAAAAAATAT+CGG | + | chr1_4:18869471-18869490 | None:intergenic | 40.0% | |
| CAGGAACTGAAATTCTGCAT+GGG | + | chr1_4:18869648-18869667 | None:intergenic | 40.0% | |
| !! | ATTGGTGATTGGTTTCCACT+CGG | - | chr1_4:18869808-18869827 | Msa0154350:intron | 40.0% |
| CATAACAATCCCTAAAGCAG+AGG | + | chr1_4:18870098-18870117 | None:intergenic | 40.0% | |
| ! | GATCCAATTTGCCTTTTCCA+TGG | - | chr1_4:18870150-18870169 | Msa0154350:CDS | 40.0% |
| ATGAGGTCTTACCATGGAAA+AGG | + | chr1_4:18870164-18870183 | None:intergenic | 40.0% | |
| TGACATGTTAGAACTCGAAG+AGG | - | chr1_4:18870323-18870342 | Msa0154350:intron | 40.0% | |
| TAGAAGAACTGTTAACTCGC+TGG | - | chr1_4:18870644-18870663 | Msa0154350:intron | 40.0% | |
| AGAAGAACTGTTAACTCGCT+GGG | - | chr1_4:18870645-18870664 | Msa0154350:intron | 40.0% | |
| ! | CTTTTGGTACTCATCACTGA+TGG | + | chr1_4:18870771-18870790 | None:intergenic | 40.0% |
| TCTTACTTGCATGACAGGAA+AGG | - | chr1_4:18870818-18870837 | Msa0154350:intron | 40.0% | |
| GAAAGGCAATGTTCAGATTG+TGG | - | chr1_4:18870835-18870854 | Msa0154350:intron | 40.0% | |
| GCTCCTGAGGCTTCTAAATA+TGG | - | chr1_4:18866284-18866303 | Msa0154350:three_prime_UTR | 45.0% | |
| TGTTCCATCACCGTGTTTCT+AGG | - | chr1_4:18866332-18866351 | Msa0154350:three_prime_UTR | 45.0% | |
| ! | GTTCCATCACCGTGTTTCTA+GGG | - | chr1_4:18866333-18866352 | Msa0154350:three_prime_UTR | 45.0% |
| AAACCCTAGAAACACGGTGA+TGG | + | chr1_4:18866339-18866358 | None:intergenic | 45.0% | |
| GAACTTGAGTAGTTCAGCGA+TGG | + | chr1_4:18866447-18866466 | None:intergenic | 45.0% | |
| ACTAAACGCAATGGAGACTG+TGG | + | chr1_4:18867332-18867351 | None:intergenic | 45.0% | |
| CTCCATTGCGTTTAGTTGAC+AGG | - | chr1_4:18867336-18867355 | Msa0154350:CDS | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | + | chr1_4:18867787-18867806 | None:intergenic | 45.0% | |
| !! | TAATGTGCCGGTTTACAAGG+CGG | - | chr1_4:18867815-18867834 | Msa0154350:intron | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | + | chr1_4:18867825-18867844 | None:intergenic | 45.0% |
| AAGGTGATGACAAACTCTCC+TGG | + | chr1_4:18867849-18867868 | None:intergenic | 45.0% | |
| ! | TGAAGGGTACGTAGGTTTCA+AGG | - | chr1_4:18868044-18868063 | Msa0154350:intron | 45.0% |
| AGGTAATTCCGCCACTATAG+AGG | - | chr1_4:18868103-18868122 | Msa0154350:intron | 45.0% | |
| TAATTCCGCCACTATAGAGG+CGG | - | chr1_4:18868106-18868125 | Msa0154350:intron | 45.0% | |
| GTAACAGAGGAAGTCAGAAG+AGG | + | chr1_4:18868317-18868336 | None:intergenic | 45.0% | |
| TTCCTCTGTTACGACCTACA+AGG | - | chr1_4:18868325-18868344 | Msa0154350:intron | 45.0% | |
| GCTAGAAAAAATATCGGGGG+TGG | + | chr1_4:18869465-18869484 | None:intergenic | 45.0% | |
| !!! | ATTTTTTCTAGCTCCGCCAC+TGG | - | chr1_4:18869473-18869492 | Msa0154350:CDS | 45.0% |
| GCAGGAACTGAAATTCTGCA+TGG | + | chr1_4:18869649-18869668 | None:intergenic | 45.0% | |
| !! | TTGGTGATTGGTTTCCACTC+GGG | - | chr1_4:18869809-18869828 | Msa0154350:intron | 45.0% |
| AATCAAACCCGAAGACACGT+CGG | - | chr1_4:18869948-18869967 | Msa0154350:intron | 45.0% | |
| ! | GGCTGCCAAAAGTTTTCAAC+TGG | - | chr1_4:18870344-18870363 | Msa0154350:intron | 45.0% |
| !!! | AAAAAAATTATTTTTTTTTG+GGG | + | chr1_4:18868166-18868185 | None:intergenic | 5.0% |
| !!! | AAATAATTTTTTTTTTCTAT+AGG | - | chr1_4:18868173-18868192 | Msa0154350:intron | 5.0% |
| !!! | AATAATTTTTTTTTTCTATA+GGG | - | chr1_4:18868174-18868193 | Msa0154350:intron | 5.0% |
| ! | TATAGAGGCGGAGCCTTGTA+TGG | - | chr1_4:18868118-18868137 | Msa0154350:intron | 50.0% |
| ! | ATAGAGGCGGAGCCTTGTAT+GGG | - | chr1_4:18868119-18868138 | Msa0154350:intron | 50.0% |
| AAGAGGAAAAGTCTGGGGGT+GGG | + | chr1_4:18868244-18868263 | None:intergenic | 50.0% | |
| ! | AGCCTTGTAGGTCGTAACAG+AGG | + | chr1_4:18868330-18868349 | None:intergenic | 50.0% |
| GCTTCTACACCTCAACCTGT+AGG | - | chr1_4:18869347-18869366 | Msa0154350:intron | 50.0% | |
| TGCAGCAGCGTAGGAACAAT+AGG | - | chr1_4:18869502-18869521 | Msa0154350:CDS | 50.0% | |
| !! | TGGTGATTGGTTTCCACTCG+GGG | - | chr1_4:18869810-18869829 | Msa0154350:intron | 50.0% |
| TGACATGCAGCCTCTGCTTT+AGG | - | chr1_4:18870085-18870104 | Msa0154350:intron | 50.0% | |
| GACATGCAGCCTCTGCTTTA+GGG | - | chr1_4:18870086-18870105 | Msa0154350:intron | 50.0% | |
| GCAGGATTAGAGGCAGCGAT+TGG | + | chr1_4:18866703-18866722 | None:intergenic | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | - | chr1_4:18867828-18867847 | Msa0154350:intron | 55.0% | |
| ACAAGGCTCCGCCTCTATAG+TGG | + | chr1_4:18868117-18868136 | None:intergenic | 55.0% | |
| ! | AGCCTTGTATGGGCTGAGGT+GGG | - | chr1_4:18868129-18868148 | Msa0154350:intron | 55.0% |
| !!! | TTTTTTTTGGGGGTGGGCCG+TGG | + | chr1_4:18868155-18868174 | None:intergenic | 55.0% |
| GAAGAGGAAAAGTCTGGGGG+TGG | + | chr1_4:18868245-18868264 | None:intergenic | 55.0% | |
| GTTCCTACGCTGCTGCATAG+TGG | + | chr1_4:18869499-18869518 | None:intergenic | 55.0% | |
| AGCTCGATCCGACGTGTCTT+CGG | + | chr1_4:18869959-18869978 | None:intergenic | 55.0% | |
| AGGCTCCGCCTCTATAGTGG+CGG | + | chr1_4:18868114-18868133 | None:intergenic | 60.0% | |
| ! | GAGCCTTGTATGGGCTGAGG+TGG | - | chr1_4:18868128-18868147 | Msa0154350:intron | 60.0% |
| TGCTGCATAGTGGCCAGTGG+CGG | + | chr1_4:18869489-18869508 | None:intergenic | 60.0% | |
| TGGCCACTATGCAGCAGCGT+AGG | - | chr1_4:18869493-18869512 | Msa0154350:CDS | 60.0% | |
| GCTCGATCCGACGTGTCTTC+GGG | + | chr1_4:18869958-18869977 | None:intergenic | 60.0% | |
| ! | GCGGAGCCTTGTATGGGCTG+AGG | - | chr1_4:18868125-18868144 | Msa0154350:intron | 65.0% |
| GGCCCACCTCAGCCCATACA+AGG | + | chr1_4:18868134-18868153 | None:intergenic | 65.0% | |
| ! | GTATGGGCTGAGGTGGGCCA+CGG | - | chr1_4:18868135-18868154 | Msa0154350:intron | 65.0% |
| CGCTGCTGCATAGTGGCCAG+TGG | + | chr1_4:18869492-18869511 | None:intergenic | 65.0% | |
| TCGCTAGCTGCAGCCCCGAG+TGG | + | chr1_4:18869826-18869845 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 18866200 | 18871055 | 18866200 | ID=Msa0154350;Name=Msa0154350 |
| chr1_4 | mRNA | 18866200 | 18871055 | 18866200 | ID=Msa0154350-mRNA-1;Parent=Msa0154350;Name=Msa0154350-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.36|0.25|1|1|1|12|195|681 |
| chr1_4 | exon | 18866200 | 18866640 | 18866200 | ID=Msa0154350-mRNA-1:exon:6931;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18866812 | 18866987 | 18866812 | ID=Msa0154350-mRNA-1:exon:6930;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18867084 | 18867479 | 18867084 | ID=Msa0154350-mRNA-1:exon:6929;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18867887 | 18868031 | 18867887 | ID=Msa0154350-mRNA-1:exon:6928;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18868719 | 18868788 | 18868719 | ID=Msa0154350-mRNA-1:exon:6927;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18868886 | 18869003 | 18868886 | ID=Msa0154350-mRNA-1:exon:6926;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18869355 | 18869632 | 18869355 | ID=Msa0154350-mRNA-1:exon:6925;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18869720 | 18869799 | 18869720 | ID=Msa0154350-mRNA-1:exon:6924;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18869888 | 18869941 | 18869888 | ID=Msa0154350-mRNA-1:exon:6923;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18870109 | 18870328 | 18870109 | ID=Msa0154350-mRNA-1:exon:6922;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18870419 | 18870575 | 18870419 | ID=Msa0154350-mRNA-1:exon:6921;Parent=Msa0154350-mRNA-1 |
| chr1_4 | exon | 18870950 | 18871055 | 18870950 | ID=Msa0154350-mRNA-1:exon:6920;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18870950 | 18871055 | 18870950 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18870419 | 18870575 | 18870419 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18870109 | 18870328 | 18870109 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18869888 | 18869941 | 18869888 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18869720 | 18869799 | 18869720 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18869355 | 18869632 | 18869355 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18868886 | 18869003 | 18868886 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18868719 | 18868788 | 18868719 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18867887 | 18868031 | 18867887 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18867084 | 18867479 | 18867084 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18866812 | 18866987 | 18866812 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | CDS | 18866395 | 18866640 | 18866395 | ID=Msa0154350-mRNA-1:cds;Parent=Msa0154350-mRNA-1 |
| chr1_4 | three_prime_UTR | 18866200 | 18866394 | 18866200 | ID=Msa0154350-mRNA-1:three_prime_utr;Parent=Msa0154350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
