Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155010 | RHN78733.1 | 89.041 | 73 | 8 | 0 | 69 | 141 | 1 | 73 | 4.19e-35 | 139 |
| Msa0155010 | RHN78733.1 | 92.466 | 146 | 11 | 0 | 145 | 290 | 157 | 302 | 1.84e-94 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155010 | A0A396JR21 | 89.041 | 73 | 8 | 0 | 69 | 141 | 1 | 73 | 2.00e-35 | 139 |
| Msa0155010 | A0A396JR21 | 92.466 | 146 | 11 | 0 | 145 | 290 | 157 | 302 | 8.78e-95 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0155010 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155010 | MtrunA17_Chr1g0169171 | 92.466 | 146 | 11 | 0 | 145 | 290 | 157 | 302 | 1.69e-98 | 291 |
| Msa0155010 | MtrunA17_Chr1g0169171 | 89.041 | 73 | 8 | 0 | 69 | 141 | 1 | 73 | 3.86e-39 | 139 |
| Msa0155010 | MtrunA17_Chr1g0169081 | 75.000 | 144 | 36 | 0 | 144 | 287 | 178 | 321 | 3.53e-76 | 235 |
| Msa0155010 | MtrunA17_Chr1g0169081 | 68.571 | 105 | 33 | 0 | 39 | 143 | 1 | 105 | 4.58e-46 | 157 |
| Msa0155010 | MtrunA17_Chr1g0169161 | 73.944 | 142 | 37 | 0 | 146 | 287 | 190 | 331 | 2.43e-75 | 233 |
| Msa0155010 | MtrunA17_Chr1g0169161 | 69.444 | 108 | 33 | 0 | 36 | 143 | 1 | 108 | 1.91e-46 | 159 |
| Msa0155010 | MtrunA17_Chr3g0125151 | 81.452 | 124 | 21 | 1 | 164 | 287 | 1 | 122 | 6.98e-71 | 214 |
| Msa0155010 | MtrunA17_Chr3g0125161 | 78.761 | 113 | 24 | 0 | 29 | 141 | 5 | 117 | 3.33e-59 | 186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAATGTTAGTCATAATT+TGG | 0.196366 | 1_4:+19877359 | None:intergenic |
| CACTTCCTTTATGATCTCTT+AGG | 0.261476 | 1_4:+19877045 | None:intergenic |
| TGCTAAGGGTGCACGTTGTT+GGG | 0.278858 | 1_4:-19875648 | Msa0155010:CDS |
| ATTTCATCATCTTCAAGATT+TGG | 0.287026 | 1_4:+19876351 | None:intergenic |
| AGGAAGACTTTGAAGAAGTT+AGG | 0.307444 | 1_4:+19877328 | None:intergenic |
| ACCTTTGGAATATTGAGTTT+TGG | 0.323910 | 1_4:+19878087 | None:intergenic |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 1_4:-19875786 | Msa0155010:CDS |
| GCATAGAAGTATGGATTTCC+AGG | 0.335888 | 1_4:+19876306 | None:intergenic |
| AAGGAAGTCATTGTTCTCTA+AGG | 0.370651 | 1_4:+19876944 | None:intergenic |
| TGACAACAGACCAAACATAT+TGG | 0.391564 | 1_4:-19876274 | Msa0155010:intron |
| TTCAAAACAAAGGCTATTGA+AGG | 0.414192 | 1_4:-19877075 | Msa0155010:CDS |
| ATGCTAAGGGTGCACGTTGT+TGG | 0.415650 | 1_4:-19875649 | Msa0155010:CDS |
| TTGCGGCAATACATGATGAT+AGG | 0.447437 | 1_4:+19875831 | None:intergenic |
| GAAAATCAATTGAAATGCTA+AGG | 0.471162 | 1_4:-19875663 | Msa0155010:CDS |
| TTTATCCTAAGAGATCATAA+AGG | 0.471353 | 1_4:-19877050 | Msa0155010:CDS |
| GAGATCATAAAGGAAGTGAT+TGG | 0.472200 | 1_4:-19877040 | Msa0155010:CDS |
| GGAAGACTTTGAAGAAGTTA+GGG | 0.478785 | 1_4:+19877329 | None:intergenic |
| AAGAAGTTAGGGAACTCCTT+GGG | 0.485576 | 1_4:+19877340 | None:intergenic |
| GAAGAAGTTAGGGAACTCCT+TGG | 0.493074 | 1_4:+19877339 | None:intergenic |
| GATATTGGTTTAGGGAGCAT+TGG | 0.500691 | 1_4:-19876390 | Msa0155010:intron |
| AAAGAAGCACTCTGATAGAA+TGG | 0.512843 | 1_4:-19877302 | Msa0155010:intron |
| GACACATTGAGGATAGTTCA+AGG | 0.516055 | 1_4:+19876880 | None:intergenic |
| CATATCAAAGTGCGTCCTAT+CGG | 0.526353 | 1_4:-19877017 | Msa0155010:CDS |
| ATCAGCTTCACAAAAGCCGT+TGG | 0.529706 | 1_4:+19877101 | None:intergenic |
| GAAATACGTAAATGGAAAGA+TGG | 0.532076 | 1_4:-19875778 | Msa0155010:CDS |
| GCCGAGTATTTGTGCGAGGG+TGG | 0.540995 | 1_4:-19875756 | Msa0155010:CDS |
| CCCACCCTCGCACAAATACT+CGG | 0.548148 | 1_4:+19875755 | None:intergenic |
| GCTGAAATGTATATTCAGCC+TGG | 0.549138 | 1_4:-19876324 | Msa0155010:CDS |
| TCAGCTTCACAAAAGCCGTT+GGG | 0.551363 | 1_4:+19877102 | None:intergenic |
| TTTCAATATGTGTGAAAACA+AGG | 0.554136 | 1_4:+19876925 | None:intergenic |
| TATCAGAGTGCTTCTTTGTG+AGG | 0.557625 | 1_4:+19877308 | None:intergenic |
| GCTAAGGGTGCACGTTGTTG+GGG | 0.562059 | 1_4:-19875647 | Msa0155010:CDS |
| TATTTCGAAGAATGTCATCA+AGG | 0.573351 | 1_4:-19876057 | Msa0155010:CDS |
| TGTGAACTTGTGTTGCATGA+AGG | 0.573986 | 1_4:-19875685 | Msa0155010:CDS |
| CCTCGTATGTTGCCACTGCA+AGG | 0.581942 | 1_4:-19876003 | Msa0155010:intron |
| AAAATCAATTGAAATGCTAA+GGG | 0.582870 | 1_4:-19875662 | Msa0155010:CDS |
| TCACAGGATGTTCAAAGTAA+CGG | 0.587767 | 1_4:-19875862 | Msa0155010:intron |
| CCTTGCAGTGGCAACATACG+AGG | 0.590792 | 1_4:+19876003 | None:intergenic |
| CCGAGTATTTGTGCGAGGGT+GGG | 0.600057 | 1_4:-19875755 | Msa0155010:CDS |
| AAATAAAGTTTGTTGCCGAT+AGG | 0.601261 | 1_4:+19877002 | None:intergenic |
| ACAAAACATATTGAAAAGAG+AGG | 0.601836 | 1_4:-19875802 | Msa0155010:CDS |
| AGCTGATGCTTTCAAAACAA+AGG | 0.604741 | 1_4:-19877085 | Msa0155010:CDS |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 1_4:+19876027 | None:intergenic |
| AGATGCTGAGGGTTCTGTGT+TGG | 0.612042 | 1_4:+19878125 | None:intergenic |
| TAAGGAAGATGCAGATGCTG+AGG | 0.615464 | 1_4:+19878113 | None:intergenic |
| ACCAAAACTCAATATTCCAA+AGG | 0.616253 | 1_4:-19878088 | Msa0155010:intron |
| ATAACAATTATACCTTGCAG+TGG | 0.625581 | 1_4:+19875991 | None:intergenic |
| AAGGAAGATGCAGATGCTGA+GGG | 0.629715 | 1_4:+19878114 | None:intergenic |
| TCTACTGCAGCTTATCCCAA+CGG | 0.637580 | 1_4:-19877117 | Msa0155010:intron |
| GATGGCCGAGTATTTGTGCG+AGG | 0.649148 | 1_4:-19875760 | Msa0155010:CDS |
| ATGGCCGAGTATTTGTGCGA+GGG | 0.662338 | 1_4:-19875759 | Msa0155010:CDS |
| AATTATGACTAACATTCCCA+AGG | 0.667042 | 1_4:-19877356 | Msa0155010:CDS |
| CTTGCAGTGGCAACATACGA+GGG | 0.725452 | 1_4:+19876004 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGAAAGAAAAA+AGG | - | chr1_4:19877327-19877346 | Msa0155010:CDS | 10.0% |
| !! | ATTGAAAATTCAACATAAAA+TGG | + | chr1_4:19875749-19875768 | None:intergenic | 15.0% |
| !!! | AATATTTTGAAATTTACCTT+TGG | + | chr1_4:19875848-19875867 | None:intergenic | 15.0% |
| !!! | AATAAAATGTTTTTTTGAGT+AGG | - | chr1_4:19876072-19876091 | Msa0155010:intron | 15.0% |
| !!! | TTTTTTTTATATCAATGTGA+AGG | + | chr1_4:19876387-19876406 | None:intergenic | 15.0% |
| !! | AAAATTAACAATAATGATGT+TGG | - | chr1_4:19876518-19876537 | Msa0155010:intron | 15.0% |
| !! | ATAATGATAATAATATTTGG+AGG | + | chr1_4:19876667-19876686 | None:intergenic | 15.0% |
| !!! | TATAAATAACATACATGTTT+TGG | + | chr1_4:19877411-19877430 | None:intergenic | 15.0% |
| !!! | GTATGTTATTTATATCATAA+TGG | - | chr1_4:19877417-19877436 | Msa0155010:intron | 15.0% |
| !!! | ATATTAATTGCTTTTTTCCT+TGG | + | chr1_4:19875692-19875711 | None:intergenic | 20.0% |
| !! | ACATTAATTCGAAATTATGT+TGG | - | chr1_4:19876283-19876302 | Msa0155010:CDS | 20.0% |
| !! | ATTCCATTCTTAAATTCATT+TGG | + | chr1_4:19876456-19876475 | None:intergenic | 20.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | - | chr1_4:19876924-19876943 | Msa0155010:CDS | 20.0% |
| !! | ATGAAAGAAAAAAGGAATAA+AGG | - | chr1_4:19877335-19877354 | Msa0155010:CDS | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | - | chr1_4:19877512-19877531 | Msa0155010:intron | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | - | chr1_4:19877519-19877538 | Msa0155010:intron | 20.0% |
| !! | AAAAACTAAACCAATATGTT+TGG | + | chr1_4:19877656-19877675 | None:intergenic | 20.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | - | chr1_4:19878255-19878274 | Msa0155010:intron | 20.0% |
| ! | TAACACTTATTATTGTTCCA+AGG | - | chr1_4:19875672-19875691 | Msa0155010:CDS | 25.0% |
| !!! | AATATTGAGTTTTGGTGTTA+AGG | + | chr1_4:19875825-19875844 | None:intergenic | 25.0% |
| ! | AAGTAAAGTTGCAAAGAAAT+AGG | + | chr1_4:19875913-19875932 | None:intergenic | 25.0% |
| ! | TTCTTCTTGTTCACAAATTA+AGG | - | chr1_4:19875993-19876012 | Msa0155010:intron | 25.0% |
| ! | TGATATATTGAAGTGAGAAA+AGG | + | chr1_4:19876052-19876071 | None:intergenic | 25.0% |
| ! | AGTAGCAAATCAACAAAATA+AGG | + | chr1_4:19876154-19876173 | None:intergenic | 25.0% |
| ! | GCTACTTATTATTGTCTTAA+CGG | - | chr1_4:19876168-19876187 | Msa0155010:intron | 25.0% |
| ! | TATTGTCTTAACGGTATTAT+AGG | - | chr1_4:19876177-19876196 | Msa0155010:intron | 25.0% |
| !!! | GAAATTATGTTGGTTAGTTT+TGG | - | chr1_4:19876293-19876312 | Msa0155010:CDS | 25.0% |
| ! | TAGCCAAATGAATTTAAGAA+TGG | - | chr1_4:19876450-19876469 | Msa0155010:intron | 25.0% |
| ! | TTAGTCATAATTTGGTTATC+TGG | + | chr1_4:19876553-19876572 | None:intergenic | 25.0% |
| ! | TTTATCCTAAGAGATCATAA+AGG | - | chr1_4:19876867-19876886 | Msa0155010:intron | 25.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | - | chr1_4:19876928-19876947 | Msa0155010:CDS | 25.0% |
| ! | TTTCAATATGTGTGAAAACA+AGG | + | chr1_4:19876995-19877014 | None:intergenic | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | + | chr1_4:19877520-19877539 | None:intergenic | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | - | chr1_4:19877518-19877537 | Msa0155010:intron | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | + | chr1_4:19877569-19877588 | None:intergenic | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | + | chr1_4:19877623-19877642 | None:intergenic | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | - | chr1_4:19877761-19877780 | Msa0155010:intron | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | - | chr1_4:19878115-19878134 | Msa0155010:CDS | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | - | chr1_4:19878254-19878273 | Msa0155010:intron | 25.0% |
| GGCAAAAGAAGAAATGTAAA+TGG | - | chr1_4:19875641-19875660 | Msa0155010:CDS | 30.0% | |
| GGAACAATAATAAGTGTTAG+TGG | + | chr1_4:19875671-19875690 | None:intergenic | 30.0% | |
| ACCAAAACTCAATATTCCAA+AGG | - | chr1_4:19875829-19875848 | Msa0155010:CDS | 30.0% | |
| !!! | ACCTTTGGAATATTGAGTTT+TGG | + | chr1_4:19875833-19875852 | None:intergenic | 30.0% |
| ACATAACCTCTTCATTTACA+TGG | - | chr1_4:19875876-19875895 | Msa0155010:intron | 30.0% | |
| ! | TTACTTCCATTTTCTTCACA+AGG | - | chr1_4:19875927-19875946 | Msa0155010:intron | 30.0% |
| CATTTACCTTGTGAAGAAAA+TGG | + | chr1_4:19875936-19875955 | None:intergenic | 30.0% | |
| GTGAACAAGAAGAAATAAAG+AGG | + | chr1_4:19875987-19876006 | None:intergenic | 30.0% | |
| ! | AAACATAACTTTTCTCCACT+AGG | + | chr1_4:19876348-19876367 | None:intergenic | 30.0% |
| TGGGAATGTTAGTCATAATT+TGG | + | chr1_4:19876561-19876580 | None:intergenic | 30.0% | |
| AATTATGACTAACATTCCCA+AGG | - | chr1_4:19876561-19876580 | Msa0155010:intron | 30.0% | |
| TTCAAAACAAAGGCTATTGA+AGG | - | chr1_4:19876842-19876861 | Msa0155010:intron | 30.0% | |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | + | chr1_4:19876918-19876937 | None:intergenic | 30.0% |
| GGAAAATACTAATACGATAG+AGG | - | chr1_4:19877085-19877104 | Msa0155010:CDS | 30.0% | |
| TGATGATTACACAATGATAG+AGG | - | chr1_4:19877151-19877170 | Msa0155010:intron | 30.0% | |
| GAAAAAAGGAATAAAGGAGA+TGG | - | chr1_4:19877341-19877360 | Msa0155010:CDS | 30.0% | |
| ! | TATCATAATGGAGAAGAAGA+AGG | - | chr1_4:19877429-19877448 | Msa0155010:intron | 30.0% |
| TATTTCGAAGAATGTCATCA+AGG | - | chr1_4:19877860-19877879 | Msa0155010:intron | 30.0% | |
| TGATATGCTTTGTAAAGCAA+AGG | + | chr1_4:19877893-19877912 | None:intergenic | 30.0% | |
| ATAACAATTATACCTTGCAG+TGG | + | chr1_4:19877929-19877948 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | + | chr1_4:19878106-19878125 | None:intergenic | 30.0% |
| GAAATACGTAAATGGAAAGA+TGG | - | chr1_4:19878139-19878158 | Msa0155010:CDS | 30.0% | |
| AACAGACCATGTAAATGAAG+AGG | + | chr1_4:19875885-19875904 | None:intergenic | 35.0% | |
| !! | AGAACAAAAGGTTTGTTGGA+AGG | + | chr1_4:19876028-19876047 | None:intergenic | 35.0% |
| AGGAAGAACAAAAGGTTTGT+TGG | + | chr1_4:19876032-19876051 | None:intergenic | 35.0% | |
| GTGAGAAAAGGAAGAACAAA+AGG | + | chr1_4:19876040-19876059 | None:intergenic | 35.0% | |
| TGTGAATAGCATTATAGCTG+TGG | - | chr1_4:19876220-19876239 | Msa0155010:intron | 35.0% | |
| GTGAATAGCATTATAGCTGT+GGG | - | chr1_4:19876221-19876240 | Msa0155010:intron | 35.0% | |
| TGAATAGCATTATAGCTGTG+GGG | - | chr1_4:19876222-19876241 | Msa0155010:intron | 35.0% | |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | + | chr1_4:19876591-19876610 | None:intergenic | 35.0% |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | + | chr1_4:19876592-19876611 | None:intergenic | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | - | chr1_4:19876615-19876634 | Msa0155010:intron | 35.0% |
| AGCTGATGCTTTCAAAACAA+AGG | - | chr1_4:19876832-19876851 | Msa0155010:intron | 35.0% | |
| CACTTCCTTTATGATCTCTT+AGG | + | chr1_4:19876875-19876894 | None:intergenic | 35.0% | |
| GAGATCATAAAGGAAGTGAT+TGG | - | chr1_4:19876877-19876896 | Msa0155010:intron | 35.0% | |
| AAGGAAGTCATTGTTCTCTA+AGG | + | chr1_4:19876976-19876995 | None:intergenic | 35.0% | |
| ! | CTTCATCTTTTGACACATTG+AGG | + | chr1_4:19877051-19877070 | None:intergenic | 35.0% |
| CTCAATGTGTCAAAAGATGA+AGG | - | chr1_4:19877049-19877068 | Msa0155010:CDS | 35.0% | |
| GTGTCAAAAGATGAAGGTAA+TGG | - | chr1_4:19877055-19877074 | Msa0155010:CDS | 35.0% | |
| TACTAATACGATAGAGGATG+AGG | - | chr1_4:19877091-19877110 | Msa0155010:CDS | 35.0% | |
| ATGATAGAGGAAGAAGAAGA+TGG | - | chr1_4:19877164-19877183 | Msa0155010:intron | 35.0% | |
| ! | TGATGATGATGATTACGCAA+TGG | - | chr1_4:19877238-19877257 | Msa0155010:intron | 35.0% |
| ATGGTAGATGAAGAAGAAGA+TGG | - | chr1_4:19877257-19877276 | Msa0155010:intron | 35.0% | |
| ! | TGATAACGATGATGTTGATG+AGG | - | chr1_4:19877283-19877302 | Msa0155010:intron | 35.0% |
| AAGGAATAAAGGAGATGGAA+AGG | - | chr1_4:19877346-19877365 | Msa0155010:CDS | 35.0% | |
| AGGAATAAAGGAGATGGAAA+GGG | - | chr1_4:19877347-19877366 | Msa0155010:CDS | 35.0% | |
| TGACAACAGACCAAACATAT+TGG | - | chr1_4:19877643-19877662 | Msa0155010:intron | 35.0% | |
| ACAGAAAGGATGAATACAAC+TGG | + | chr1_4:19878033-19878052 | None:intergenic | 35.0% | |
| TCACAGGATGTTCAAAGTAA+CGG | - | chr1_4:19878055-19878074 | Msa0155010:intron | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | - | chr1_4:19878131-19878150 | Msa0155010:CDS | 35.0% | |
| GTATTGCTAAACCTACACCT+TGG | + | chr1_4:19876248-19876267 | None:intergenic | 40.0% | |
| AAGAAGTTAGGGAACTCCTT+GGG | + | chr1_4:19876580-19876599 | None:intergenic | 40.0% | |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | + | chr1_4:19876612-19876631 | None:intergenic | 40.0% |
| CATATCAAAGTGCGTCCTAT+CGG | - | chr1_4:19876900-19876919 | Msa0155010:CDS | 40.0% | |
| GACACATTGAGGATAGTTCA+AGG | + | chr1_4:19877040-19877059 | None:intergenic | 40.0% | |
| !! | AAAGATGAAGGTAATGGACG+AGG | - | chr1_4:19877061-19877080 | Msa0155010:CDS | 40.0% |
| ! | TGATAACGATGACGTTGATG+AGG | - | chr1_4:19877190-19877209 | Msa0155010:intron | 40.0% |
| ! | TAACGATGATGTTGATGAGG+AGG | - | chr1_4:19877286-19877305 | Msa0155010:intron | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | - | chr1_4:19877527-19877546 | Msa0155010:intron | 40.0% |
| GCTGAAATGTATATTCAGCC+TGG | - | chr1_4:19877593-19877612 | Msa0155010:intron | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+AGG | + | chr1_4:19877614-19877633 | None:intergenic | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+AGG | - | chr1_4:19877767-19877786 | Msa0155010:intron | 40.0% |
| ! | AGTCCATTTTCTTAGGCCTA+GGG | - | chr1_4:19877768-19877787 | Msa0155010:intron | 40.0% |
| TTCATCCTTTCTGTCATCAC+AGG | - | chr1_4:19878039-19878058 | Msa0155010:intron | 40.0% | |
| AACATCCTGTGATGACAGAA+AGG | + | chr1_4:19878047-19878066 | None:intergenic | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | + | chr1_4:19878089-19878108 | None:intergenic | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | - | chr1_4:19878232-19878251 | Msa0155010:intron | 40.0% | |
| AAGGAAGATGCAGATGCTGA+GGG | + | chr1_4:19875806-19875825 | None:intergenic | 45.0% | |
| TAAGGAAGATGCAGATGCTG+AGG | + | chr1_4:19875807-19875826 | None:intergenic | 45.0% | |
| ! | TAGGCACTAGCATTGGAACA+AGG | + | chr1_4:19876329-19876348 | None:intergenic | 45.0% |
| GAAGAAGTTAGGGAACTCCT+TGG | + | chr1_4:19876581-19876600 | None:intergenic | 45.0% | |
| TCTACTGCAGCTTATCCCAA+CGG | - | chr1_4:19876800-19876819 | Msa0155010:intron | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | + | chr1_4:19876818-19876837 | None:intergenic | 45.0% | |
| ATCAGCTTCACAAAAGCCGT+TGG | + | chr1_4:19876819-19876838 | None:intergenic | 45.0% | |
| TACGATAGAGGATGAGGAAG+AGG | - | chr1_4:19877097-19877116 | Msa0155010:CDS | 45.0% | |
| ! | TAACGATGACGTTGATGAGG+AGG | - | chr1_4:19877193-19877212 | Msa0155010:intron | 45.0% |
| TCACCCTAGGCCTAAGAAAA+TGG | + | chr1_4:19877774-19877793 | None:intergenic | 45.0% | |
| ! | ATTTTCTTAGGCCTAGGGTG+AGG | - | chr1_4:19877773-19877792 | Msa0155010:intron | 45.0% |
| ACCAATTTCATCCTCACCCT+AGG | + | chr1_4:19877787-19877806 | None:intergenic | 45.0% | |
| !! | AAAATAATGATAATAATATT+TGG | + | chr1_4:19876670-19876689 | None:intergenic | 5.0% |
| AGATGCTGAGGGTTCTGTGT+TGG | + | chr1_4:19875795-19875814 | None:intergenic | 50.0% | |
| GTTCCAATGCTAGTGCCTAG+TGG | - | chr1_4:19876330-19876349 | Msa0155010:CDS | 50.0% | |
| TCTCCACTAGGCACTAGCAT+TGG | + | chr1_4:19876336-19876355 | None:intergenic | 50.0% | |
| !! | GATGAAGGTAATGGACGAGG+AGG | - | chr1_4:19877064-19877083 | Msa0155010:CDS | 50.0% |
| AGAGGATGAGGAAGAGGAAG+AGG | - | chr1_4:19877103-19877122 | Msa0155010:CDS | 50.0% | |
| GAGGAAGAGGAAGAGGAAGA+TGG | - | chr1_4:19877110-19877129 | Msa0155010:CDS | 50.0% | |
| ! | CGATGATGTTGATGAGGAGG+AGG | - | chr1_4:19877289-19877308 | Msa0155010:intron | 50.0% |
| GCCTAGGGTGAGGATGAAAT+TGG | - | chr1_4:19877783-19877802 | Msa0155010:intron | 50.0% | |
| CTTGCAGTGGCAACATACGA+GGG | + | chr1_4:19877916-19877935 | None:intergenic | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | - | chr1_4:19878158-19878177 | Msa0155010:intron | 50.0% | |
| ! | ATGCTAAGGGTGCACGTTGT+TGG | - | chr1_4:19878268-19878287 | Msa0155010:intron | 50.0% |
| ! | TGCTAAGGGTGCACGTTGTT+GGG | - | chr1_4:19878269-19878288 | Msa0155010:intron | 50.0% |
| GCATTATAGCTGTGGGGCCA+AGG | - | chr1_4:19876228-19876247 | Msa0155010:intron | 55.0% | |
| ! | CGATGACGTTGATGAGGAGG+AGG | - | chr1_4:19877196-19877215 | Msa0155010:intron | 55.0% |
| ! | CGTTGATGAGGAGGAGGATG+AGG | - | chr1_4:19877202-19877221 | Msa0155010:intron | 55.0% |
| CCTTGCAGTGGCAACATACG+AGG | + | chr1_4:19877917-19877936 | None:intergenic | 55.0% | |
| CCTCGTATGTTGCCACTGCA+AGG | - | chr1_4:19877914-19877933 | Msa0155010:intron | 55.0% | |
| GATGGCCGAGTATTTGTGCG+AGG | - | chr1_4:19878157-19878176 | Msa0155010:intron | 55.0% | |
| CCCACCCTCGCACAAATACT+CGG | + | chr1_4:19878165-19878184 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | - | chr1_4:19878162-19878181 | Msa0155010:intron | 55.0% | |
| ! | GCTAAGGGTGCACGTTGTTG+GGG | - | chr1_4:19878270-19878289 | Msa0155010:intron | 55.0% |
| TAGCTGTGGGGCCAAGGTGT+AGG | - | chr1_4:19876234-19876253 | Msa0155010:intron | 60.0% | |
| GCCGAGTATTTGTGCGAGGG+TGG | - | chr1_4:19878161-19878180 | Msa0155010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 19875639 | 19878300 | 19875639 | ID=Msa0155010;Name=Msa0155010 |
| chr1_4 | mRNA | 19875639 | 19878300 | 19875639 | ID=Msa0155010-mRNA-1;Parent=Msa0155010;Name=Msa0155010-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0.28|0.12|0.87|0.28|0.37|8|0|290 |
| chr1_4 | exon | 19878284 | 19878300 | 19878284 | ID=Msa0155010-mRNA-1:exon:7358;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19878089 | 19878165 | 19878089 | ID=Msa0155010-mRNA-1:exon:7357;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19877303 | 19877385 | 19877303 | ID=Msa0155010-mRNA-1:exon:7356;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19876883 | 19877129 | 19876883 | ID=Msa0155010-mRNA-1:exon:7355;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19876869 | 19876874 | 19876869 | ID=Msa0155010-mRNA-1:exon:7354;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19876275 | 19876399 | 19876275 | ID=Msa0155010-mRNA-1:exon:7353;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19876004 | 19876081 | 19876004 | ID=Msa0155010-mRNA-1:exon:7352;Parent=Msa0155010-mRNA-1 |
| chr1_4 | exon | 19875639 | 19875878 | 19875639 | ID=Msa0155010-mRNA-1:exon:7351;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19878284 | 19878300 | 19878284 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19878089 | 19878165 | 19878089 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19877303 | 19877385 | 19877303 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19876883 | 19877129 | 19876883 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19876869 | 19876874 | 19876869 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19876275 | 19876399 | 19876275 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19876004 | 19876081 | 19876004 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| chr1_4 | CDS | 19875639 | 19875878 | 19875639 | ID=Msa0155010-mRNA-1:cds;Parent=Msa0155010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
