Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155020 | KEH41184.1 | 61.003 | 359 | 113 | 3 | 1 | 358 | 1 | 333 | 6.17e-142 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155020 | sp|Q9M8K2|REM21_ARATH | 23.944 | 355 | 212 | 8 | 9 | 358 | 23 | 324 | 2.52e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155020 | A0A072VGK8 | 61.003 | 359 | 113 | 3 | 1 | 358 | 1 | 333 | 2.95e-142 | 416 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0155020 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155020 | MtrunA17_Chr1g0169171 | 59.259 | 324 | 105 | 3 | 36 | 358 | 3 | 300 | 4.03e-124 | 359 |
| Msa0155020 | MtrunA17_Chr1g0169161 | 92.655 | 177 | 13 | 0 | 187 | 363 | 161 | 337 | 2.50e-121 | 353 |
| Msa0155020 | MtrunA17_Chr1g0169081 | 73.054 | 167 | 42 | 1 | 196 | 359 | 157 | 323 | 7.68e-85 | 260 |
| Msa0155020 | MtrunA17_Chr3g0125151 | 68.800 | 125 | 37 | 1 | 234 | 358 | 1 | 123 | 1.54e-62 | 196 |
| Msa0155020 | MtrunA17_Chr3g0125161 | 75.000 | 120 | 30 | 0 | 2 | 121 | 13 | 132 | 4.02e-58 | 186 |
| Msa0155020 | MtrunA17_Chr1g0154251 | 25.625 | 160 | 108 | 3 | 12 | 170 | 27 | 176 | 7.21e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155020 | AT3G06160.5 | 24.286 | 350 | 217 | 6 | 9 | 358 | 8 | 309 | 2.31e-18 | 85.1 |
| Msa0155020 | AT3G06160.4 | 24.286 | 350 | 217 | 6 | 9 | 358 | 8 | 309 | 2.31e-18 | 85.1 |
| Msa0155020 | AT3G06160.3 | 24.286 | 350 | 217 | 6 | 9 | 358 | 8 | 309 | 2.31e-18 | 85.1 |
| Msa0155020 | AT3G06160.1 | 23.944 | 355 | 212 | 8 | 9 | 358 | 23 | 324 | 2.57e-18 | 85.1 |
| Msa0155020 | AT3G06160.2 | 23.944 | 355 | 212 | 8 | 9 | 358 | 67 | 368 | 5.01e-18 | 84.7 |
| Msa0155020 | AT5G57720.1 | 22.778 | 360 | 213 | 14 | 1 | 358 | 3 | 299 | 3.25e-14 | 72.8 |
| Msa0155020 | AT3G53310.1 | 29.008 | 131 | 85 | 2 | 1 | 125 | 1 | 129 | 2.14e-13 | 70.5 |
| Msa0155020 | AT5G60140.1 | 22.969 | 357 | 220 | 8 | 11 | 357 | 15 | 326 | 4.90e-12 | 66.6 |
| Msa0155020 | AT3G18960.2 | 27.632 | 152 | 106 | 3 | 11 | 161 | 30 | 178 | 4.42e-11 | 62.0 |
| Msa0155020 | AT3G18960.1 | 34.951 | 103 | 64 | 2 | 11 | 112 | 30 | 130 | 4.99e-11 | 62.0 |
Find 56 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGAGTGCTTATCTTTA+AGG | 0.100384 | 1_4:+19888279 | None:intergenic |
| TCAAAACTTACATGCTTTGC+AGG | 0.294940 | 1_4:+19887383 | None:intergenic |
| ACCAAGTTCACAAAAGCATT+TGG | 0.331753 | 1_4:+19887933 | None:intergenic |
| AAAGAATTATACCAATTCAT+TGG | 0.334519 | 1_4:+19887138 | None:intergenic |
| TGAGGAGGAAAATAATAATA+TGG | 0.339726 | 1_4:-19887670 | Msa0155020:CDS |
| TAGAGAAGAAAATTGTTTAG+TGG | 0.355645 | 1_4:-19887790 | Msa0155020:CDS |
| CATCAATTTCATCATCTTCA+AGG | 0.360750 | 1_4:+19887221 | None:intergenic |
| TGAACTTGGTGCGTTCAAAA+AGG | 0.361173 | 1_4:-19887920 | Msa0155020:CDS |
| TGATAAGGGTGCACATTGTT+AGG | 0.364925 | 1_4:-19886526 | Msa0155020:CDS |
| GCAAAGAAATGTGGATTTCC+CGG | 0.368639 | 1_4:+19887181 | None:intergenic |
| CTCTTCCTCTACGATCTCTT+AGG | 0.380260 | 1_4:+19887877 | None:intergenic |
| TGCTGAATTGTACATTCAAC+CGG | 0.384241 | 1_4:-19887200 | Msa0155020:CDS |
| GGAAGATGAGGAAGAGGAAG+AGG | 0.385448 | 1_4:-19887649 | Msa0155020:CDS |
| GATGGTGATGATGTCGATTA+TGG | 0.409968 | 1_4:-19887627 | Msa0155020:CDS |
| CCAAGTTCACAAAAGCATTT+GGG | 0.414978 | 1_4:+19887934 | None:intergenic |
| AAGAATTATACCAATTCATT+GGG | 0.416544 | 1_4:+19887139 | None:intergenic |
| GAGAAGCAATAGAAATGATA+AGG | 0.417868 | 1_4:-19886541 | Msa0155020:CDS |
| TCTTTACAGACCCAATGAAT+TGG | 0.446529 | 1_4:-19887149 | Msa0155020:intron |
| CATGTCAAAGCGCGTCGTAT+TGG | 0.452247 | 1_4:-19887849 | Msa0155020:CDS |
| TAATATGGAAGATGAGGAAG+AGG | 0.461266 | 1_4:-19887655 | Msa0155020:CDS |
| GACATCGGAAGCAGCTCTGC+AGG | 0.476732 | 1_4:-19887250 | Msa0155020:CDS |
| GAGATCGTAGAGGAAGAGAT+TGG | 0.486399 | 1_4:-19887872 | Msa0155020:CDS |
| TACAAGGAAAATAATAAAAG+TGG | 0.503753 | 1_4:-19887423 | Msa0155020:CDS |
| AATGGCCGAGTCTTGGTGCT+AGG | 0.508826 | 1_4:-19886638 | Msa0155020:CDS |
| AGATAAGCACTCTGAGAGAA+TGG | 0.511759 | 1_4:-19888273 | Msa0155020:intron |
| CCTTGCAGTGGCAACATACA+AGG | 0.512825 | 1_4:+19886876 | None:intergenic |
| GATGAGGAAGAGGAAGAGGA+TGG | 0.519418 | 1_4:-19887645 | Msa0155020:CDS |
| AGAGAGGTCAAATACGTACT+TGG | 0.526584 | 1_4:-19886664 | Msa0155020:CDS |
| AGAAGCAATAGAAATGATAA+GGG | 0.545719 | 1_4:-19886540 | Msa0155020:CDS |
| ATGGCCGAGTCTTGGTGCTA+GGG | 0.545802 | 1_4:-19886637 | Msa0155020:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.551559 | 1_4:-19886522 | Msa0155020:CDS |
| AACAATGCAAAGGAGTATCC+TGG | 0.558136 | 1_4:-19888317 | Msa0155020:CDS |
| GTGTGAAAAGATGCCGGTGA+TGG | 0.558389 | 1_4:-19887694 | Msa0155020:CDS |
| AAATAATAATATGGAAGATG+AGG | 0.565051 | 1_4:-19887661 | Msa0155020:CDS |
| ACAGAGTGAAAATGTGTACA+AGG | 0.566220 | 1_4:-19887439 | Msa0155020:CDS |
| TAATGATGATGATGATATGA+TGG | 0.571680 | 1_4:-19887535 | Msa0155020:CDS |
| GACGATGAGGGTGATGATGA+GGG | 0.579768 | 1_4:-19887558 | Msa0155020:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.583961 | 1_4:-19886876 | Msa0155020:intron |
| TGACGATGAGGGTGATGATG+AGG | 0.595776 | 1_4:-19887559 | Msa0155020:CDS |
| AAAGATGCCGGTGATGGATG+AGG | 0.602253 | 1_4:-19887688 | Msa0155020:CDS |
| GCCACCCTAGCACCAAGACT+CGG | 0.602379 | 1_4:+19886633 | None:intergenic |
| GCCGAGTCTTGGTGCTAGGG+TGG | 0.603546 | 1_4:-19886634 | Msa0155020:CDS |
| ATCAATGTGTGAAAAGATGC+CGG | 0.608751 | 1_4:-19887700 | Msa0155020:CDS |
| GTATGTCTTGTGCTGATCTG+TGG | 0.608903 | 1_4:+19886692 | None:intergenic |
| TGATGATGATGATGCTGAAG+AGG | 0.610168 | 1_4:-19887592 | Msa0155020:CDS |
| ATTAGAATTATACCTTGCAG+TGG | 0.615156 | 1_4:+19886864 | None:intergenic |
| TGATGATGATATGATGGCAG+AGG | 0.617100 | 1_4:-19887529 | Msa0155020:CDS |
| GATGATGATGATGCTGAAGA+GGG | 0.617100 | 1_4:-19887591 | Msa0155020:CDS |
| GGTGATGATAGTGACGATGA+GGG | 0.623737 | 1_4:-19887570 | Msa0155020:CDS |
| AACTATGACTAACAATGCAA+AGG | 0.632234 | 1_4:-19888327 | None:intergenic |
| GGGTGATGATAGTGACGATG+AGG | 0.647049 | 1_4:-19887571 | Msa0155020:CDS |
| GATGCCGGTGATGGATGAGG+AGG | 0.648893 | 1_4:-19887685 | Msa0155020:CDS |
| TGTGAACTTGTAATGCGTAA+CGG | 0.682308 | 1_4:-19886563 | Msa0155020:CDS |
| ACAAGACATACCGAAAAGAG+AGG | 0.689496 | 1_4:-19886680 | Msa0155020:CDS |
| GCTGAATTGTACATTCAACC+GGG | 0.697197 | 1_4:-19887199 | Msa0155020:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1_4:-19887882 | Msa0155020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTTAACATATTGTA+TGG | - | chr1_4:19886728-19886747 | Msa0155020:CDS | 15.0% |
| !! | TAAAAACAAAAGAAATCATT+AGG | + | chr1_4:19887558-19887577 | None:intergenic | 15.0% |
| !!! | TAATGATTTCTTTTGTTTTT+AGG | - | chr1_4:19887557-19887576 | Msa0155020:CDS | 15.0% |
| !!! | AATGATTTCTTTTGTTTTTA+GGG | - | chr1_4:19887558-19887577 | Msa0155020:CDS | 15.0% |
| !! | AATTGGTATAATTCTTTATA+TGG | - | chr1_4:19887699-19887718 | Msa0155020:CDS | 15.0% |
| !!! | CAAAATTTTAACATATTGTA+TGG | - | chr1_4:19886728-19886747 | Msa0155020:CDS | 15.0% |
| !! | TAAAAACAAAAGAAATCATT+AGG | + | chr1_4:19887558-19887577 | None:intergenic | 15.0% |
| !!! | TAATGATTTCTTTTGTTTTT+AGG | - | chr1_4:19887557-19887576 | Msa0155020:CDS | 15.0% |
| !!! | AATGATTTCTTTTGTTTTTA+GGG | - | chr1_4:19887558-19887577 | Msa0155020:CDS | 15.0% |
| !! | AATTGGTATAATTCTTTATA+TGG | - | chr1_4:19887699-19887718 | Msa0155020:CDS | 15.0% |
| !! | AAAATAAATTAGATGAAGCA+TGG | + | chr1_4:19886601-19886620 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTTGATAAAGT+CGG | - | chr1_4:19886618-19886637 | Msa0155020:CDS | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | + | chr1_4:19887077-19887096 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | - | chr1_4:19887170-19887189 | Msa0155020:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | - | chr1_4:19887408-19887427 | Msa0155020:CDS | 20.0% |
| !!! | ATGATTTCTTTTGTTTTTAG+GGG | - | chr1_4:19887559-19887578 | Msa0155020:CDS | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | + | chr1_4:19887695-19887714 | None:intergenic | 20.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | + | chr1_4:19887696-19887715 | None:intergenic | 20.0% |
| !!! | TATTTTTTACCATATGCAAA+AGG | - | chr1_4:19887744-19887763 | Msa0155020:CDS | 20.0% |
| !!! | TTTTCCAAAAAATGTTATCA+AGG | - | chr1_4:19887901-19887920 | Msa0155020:CDS | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+TGG | + | chr1_4:19887908-19887927 | None:intergenic | 20.0% |
| !! | AAAATAAATTAGATGAAGCA+TGG | + | chr1_4:19886601-19886620 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTTTTGATAAAGT+CGG | - | chr1_4:19886618-19886637 | Msa0155020:CDS | 20.0% |
| !! | TTTCAATATGAGTAAAAACA+AGG | + | chr1_4:19887077-19887096 | None:intergenic | 20.0% |
| !! | AAATAATAATATGGAAGATG+AGG | - | chr1_4:19887170-19887189 | Msa0155020:CDS | 20.0% |
| !! | TACAAGGAAAATAATAAAAG+TGG | - | chr1_4:19887408-19887427 | Msa0155020:CDS | 20.0% |
| !!! | ATGATTTCTTTTGTTTTTAG+GGG | - | chr1_4:19887559-19887578 | Msa0155020:CDS | 20.0% |
| !! | AAGAATTATACCAATTCATT+GGG | + | chr1_4:19887695-19887714 | None:intergenic | 20.0% |
| !! | AAAGAATTATACCAATTCAT+TGG | + | chr1_4:19887696-19887715 | None:intergenic | 20.0% |
| !!! | TATTTTTTACCATATGCAAA+AGG | - | chr1_4:19887744-19887763 | Msa0155020:CDS | 20.0% |
| !!! | TTTTCCAAAAAATGTTATCA+AGG | - | chr1_4:19887901-19887920 | Msa0155020:CDS | 20.0% |
| !!! | AAATCCTTGATAACATTTTT+TGG | + | chr1_4:19887908-19887927 | None:intergenic | 20.0% |
| ! | ACTATATGATATGTGAACTT+TGG | - | chr1_4:19886791-19886810 | Msa0155020:intron | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | - | chr1_4:19887010-19887029 | Msa0155020:intron | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | - | chr1_4:19887041-19887060 | Msa0155020:intron | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | - | chr1_4:19887161-19887180 | Msa0155020:CDS | 25.0% |
| !! | TAATGATGATGATGATATGA+TGG | - | chr1_4:19887296-19887315 | Msa0155020:intron | 25.0% |
| !!! | GCATTCATCCTTTTTTTTTA+TGG | - | chr1_4:19888071-19888090 | Msa0155020:intron | 25.0% |
| ! | ATATCCTGCCATAAAAAAAA+AGG | + | chr1_4:19888082-19888101 | None:intergenic | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | - | chr1_4:19888291-19888310 | Msa0155020:CDS | 25.0% |
| ! | ACTATATGATATGTGAACTT+TGG | - | chr1_4:19886791-19886810 | Msa0155020:intron | 25.0% |
| !!! | AGTTTTATTTTGATGATGGT+TGG | - | chr1_4:19887010-19887029 | Msa0155020:intron | 25.0% |
| ! | TAGAGAAGAAAATTGTTTAG+TGG | - | chr1_4:19887041-19887060 | Msa0155020:intron | 25.0% |
| ! | TGAGGAGGAAAATAATAATA+TGG | - | chr1_4:19887161-19887180 | Msa0155020:CDS | 25.0% |
| !! | TAATGATGATGATGATATGA+TGG | - | chr1_4:19887296-19887315 | Msa0155020:intron | 25.0% |
| !!! | GCATTCATCCTTTTTTTTTA+TGG | - | chr1_4:19888071-19888090 | Msa0155020:intron | 25.0% |
| ! | ATATCCTGCCATAAAAAAAA+AGG | + | chr1_4:19888082-19888101 | None:intergenic | 25.0% |
| ! | AGAAGCAATAGAAATGATAA+GGG | - | chr1_4:19888291-19888310 | Msa0155020:CDS | 25.0% |
| TTCAAAAAGGAGGGTAATAA+AGG | - | chr1_4:19886924-19886943 | Msa0155020:CDS | 30.0% | |
| !!! | GACGAGTTTTATTTTGATGA+TGG | - | chr1_4:19887006-19887025 | Msa0155020:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | + | chr1_4:19887613-19887632 | None:intergenic | 30.0% | |
| ! | CTCAATAAACCTTTTGCATA+TGG | + | chr1_4:19887756-19887775 | None:intergenic | 30.0% |
| CGTCTTTGATGTACTTATTA+TGG | - | chr1_4:19887867-19887886 | Msa0155020:CDS | 30.0% | |
| ATTAGAATTATACCTTGCAG+TGG | + | chr1_4:19887970-19887989 | None:intergenic | 30.0% | |
| !!! | TCATCCTTTTTTTTTATGGC+AGG | - | chr1_4:19888075-19888094 | Msa0155020:intron | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | - | chr1_4:19888175-19888194 | Msa0155020:intron | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | - | chr1_4:19888290-19888309 | Msa0155020:CDS | 30.0% | |
| TTCAAAAAGGAGGGTAATAA+AGG | - | chr1_4:19886924-19886943 | Msa0155020:CDS | 30.0% | |
| !!! | GACGAGTTTTATTTTGATGA+TGG | - | chr1_4:19887006-19887025 | Msa0155020:intron | 30.0% |
| CATCAATTTCATCATCTTCA+AGG | + | chr1_4:19887613-19887632 | None:intergenic | 30.0% | |
| ! | CTCAATAAACCTTTTGCATA+TGG | + | chr1_4:19887756-19887775 | None:intergenic | 30.0% |
| CGTCTTTGATGTACTTATTA+TGG | - | chr1_4:19887867-19887886 | Msa0155020:CDS | 30.0% | |
| ATTAGAATTATACCTTGCAG+TGG | + | chr1_4:19887970-19887989 | None:intergenic | 30.0% | |
| !!! | TCATCCTTTTTTTTTATGGC+AGG | - | chr1_4:19888075-19888094 | Msa0155020:intron | 30.0% |
| CAAATACGTACTTGGAAAAA+TGG | - | chr1_4:19888175-19888194 | Msa0155020:intron | 30.0% | |
| GAGAAGCAATAGAAATGATA+AGG | - | chr1_4:19888290-19888309 | Msa0155020:CDS | 30.0% | |
| ! | TCTCAGAGTGCTTATCTTTA+AGG | + | chr1_4:19886555-19886574 | None:intergenic | 35.0% |
| ATCATGCAAGTGTACATTTG+AGG | + | chr1_4:19886703-19886722 | None:intergenic | 35.0% | |
| !! | CCAAGTTCACAAAAGCATTT+GGG | + | chr1_4:19886900-19886919 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | + | chr1_4:19886901-19886920 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1_4:19886949-19886968 | Msa0155020:intron | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | - | chr1_4:19887131-19887150 | Msa0155020:intron | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | - | chr1_4:19887176-19887195 | Msa0155020:CDS | 35.0% | |
| ACAGAGTGAAAATGTGTACA+AGG | - | chr1_4:19887392-19887411 | Msa0155020:intron | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | + | chr1_4:19887451-19887470 | None:intergenic | 35.0% | |
| !!! | CTTTTGTTTTTAGGGGACAT+CGG | - | chr1_4:19887566-19887585 | Msa0155020:CDS | 35.0% |
| TGCTGAATTGTACATTCAAC+CGG | - | chr1_4:19887631-19887650 | Msa0155020:CDS | 35.0% | |
| ! | CTACGTTTTGCAAAGAAATG+TGG | + | chr1_4:19887662-19887681 | None:intergenic | 35.0% |
| TCTTTACAGACCCAATGAAT+TGG | - | chr1_4:19887682-19887701 | Msa0155020:CDS | 35.0% | |
| ! | ACATGTTTAGAGCGATACAT+TGG | + | chr1_4:19887797-19887816 | None:intergenic | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | + | chr1_4:19887934-19887953 | None:intergenic | 35.0% |
| GACAACACAATCAGTAAAAC+TGG | + | chr1_4:19888029-19888048 | None:intergenic | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | + | chr1_4:19888164-19888183 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | - | chr1_4:19888268-19888287 | Msa0155020:intron | 35.0% | |
| ! | TCTCAGAGTGCTTATCTTTA+AGG | + | chr1_4:19886555-19886574 | None:intergenic | 35.0% |
| ATCATGCAAGTGTACATTTG+AGG | + | chr1_4:19886703-19886722 | None:intergenic | 35.0% | |
| !! | CCAAGTTCACAAAAGCATTT+GGG | + | chr1_4:19886900-19886919 | None:intergenic | 35.0% |
| !! | ACCAAGTTCACAAAAGCATT+TGG | + | chr1_4:19886901-19886920 | None:intergenic | 35.0% |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1_4:19886949-19886968 | Msa0155020:intron | 35.0% | |
| ATCAATGTGTGAAAAGATGC+CGG | - | chr1_4:19887131-19887150 | Msa0155020:intron | 35.0% | |
| TAATATGGAAGATGAGGAAG+AGG | - | chr1_4:19887176-19887195 | Msa0155020:CDS | 35.0% | |
| ACAGAGTGAAAATGTGTACA+AGG | - | chr1_4:19887392-19887411 | Msa0155020:intron | 35.0% | |
| TCAAAACTTACATGCTTTGC+AGG | + | chr1_4:19887451-19887470 | None:intergenic | 35.0% | |
| !!! | CTTTTGTTTTTAGGGGACAT+CGG | - | chr1_4:19887566-19887585 | Msa0155020:CDS | 35.0% |
| TGCTGAATTGTACATTCAAC+CGG | - | chr1_4:19887631-19887650 | Msa0155020:CDS | 35.0% | |
| ! | CTACGTTTTGCAAAGAAATG+TGG | + | chr1_4:19887662-19887681 | None:intergenic | 35.0% |
| TCTTTACAGACCCAATGAAT+TGG | - | chr1_4:19887682-19887701 | Msa0155020:CDS | 35.0% | |
| ! | ACATGTTTAGAGCGATACAT+TGG | + | chr1_4:19887797-19887816 | None:intergenic | 35.0% |
| ! | TGACATATTTTGTGAAGCAG+AGG | + | chr1_4:19887934-19887953 | None:intergenic | 35.0% |
| GACAACACAATCAGTAAAAC+TGG | + | chr1_4:19888029-19888048 | None:intergenic | 35.0% | |
| ! | ACGTATTTGACCTCTCTTTT+CGG | + | chr1_4:19888164-19888183 | None:intergenic | 35.0% |
| TGTGAACTTGTAATGCGTAA+CGG | - | chr1_4:19888268-19888287 | Msa0155020:intron | 35.0% | |
| !! | AACAATGCAAAGGAGTATCC+TGG | - | chr1_4:19886514-19886533 | Msa0155020:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | + | chr1_4:19886535-19886554 | None:intergenic | 40.0% |
| ! | AGATAAGCACTCTGAGAGAA+TGG | - | chr1_4:19886558-19886577 | Msa0155020:CDS | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | + | chr1_4:19886885-19886904 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | - | chr1_4:19886897-19886916 | Msa0155020:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | - | chr1_4:19886911-19886930 | Msa0155020:CDS | 40.0% |
| ! | GATGGTGATGATGTCGATTA+TGG | - | chr1_4:19887204-19887223 | Msa0155020:CDS | 40.0% |
| ! | TGATGATGATGATGCTGAAG+AGG | - | chr1_4:19887239-19887258 | Msa0155020:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | - | chr1_4:19887240-19887259 | Msa0155020:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | - | chr1_4:19887302-19887321 | Msa0155020:intron | 40.0% |
| GCTGAATTGTACATTCAACC+GGG | - | chr1_4:19887632-19887651 | Msa0155020:CDS | 40.0% | |
| GCAAAGAAATGTGGATTTCC+CGG | + | chr1_4:19887653-19887672 | None:intergenic | 40.0% | |
| GCGATACATTGGAGATACAT+TGG | + | chr1_4:19887786-19887805 | None:intergenic | 40.0% | |
| ACAAGACATACCGAAAAGAG+AGG | - | chr1_4:19888151-19888170 | Msa0155020:intron | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | - | chr1_4:19888167-19888186 | Msa0155020:intron | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | - | chr1_4:19888305-19888324 | Msa0155020:CDS | 40.0% |
| !! | AACAATGCAAAGGAGTATCC+TGG | - | chr1_4:19886514-19886533 | Msa0155020:CDS | 40.0% |
| ! | AGGAAGACTTTGAAAAAGCC+AGG | + | chr1_4:19886535-19886554 | None:intergenic | 40.0% |
| ! | AGATAAGCACTCTGAGAGAA+TGG | - | chr1_4:19886558-19886577 | Msa0155020:CDS | 40.0% |
| ! | CATTTGGGATAAGCTGCAAT+AGG | + | chr1_4:19886885-19886904 | None:intergenic | 40.0% |
| ! | CCCAAATGCTTTTGTGAACT+TGG | - | chr1_4:19886897-19886916 | Msa0155020:CDS | 40.0% |
| !! | TGAACTTGGTGCGTTCAAAA+AGG | - | chr1_4:19886911-19886930 | Msa0155020:CDS | 40.0% |
| ! | GATGGTGATGATGTCGATTA+TGG | - | chr1_4:19887204-19887223 | Msa0155020:CDS | 40.0% |
| ! | TGATGATGATGATGCTGAAG+AGG | - | chr1_4:19887239-19887258 | Msa0155020:CDS | 40.0% |
| ! | GATGATGATGATGCTGAAGA+GGG | - | chr1_4:19887240-19887259 | Msa0155020:CDS | 40.0% |
| ! | TGATGATGATATGATGGCAG+AGG | - | chr1_4:19887302-19887321 | Msa0155020:intron | 40.0% |
| GCTGAATTGTACATTCAACC+GGG | - | chr1_4:19887632-19887651 | Msa0155020:CDS | 40.0% | |
| GCAAAGAAATGTGGATTTCC+CGG | + | chr1_4:19887653-19887672 | None:intergenic | 40.0% | |
| GCGATACATTGGAGATACAT+TGG | + | chr1_4:19887786-19887805 | None:intergenic | 40.0% | |
| ACAAGACATACCGAAAAGAG+AGG | - | chr1_4:19888151-19888170 | Msa0155020:intron | 40.0% | |
| AGAGAGGTCAAATACGTACT+TGG | - | chr1_4:19888167-19888186 | Msa0155020:intron | 40.0% | |
| ! | TGATAAGGGTGCACATTGTT+AGG | - | chr1_4:19888305-19888324 | Msa0155020:CDS | 40.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | - | chr1_4:19886914-19886933 | Msa0155020:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | - | chr1_4:19886915-19886934 | Msa0155020:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1_4:19886957-19886976 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1_4:19886959-19886978 | Msa0155020:intron | 45.0% | |
| ! | TTTTCCTCCTCATCCATCAC+CGG | + | chr1_4:19887153-19887172 | None:intergenic | 45.0% |
| ! | GGTGATGATAGTGACGATGA+GGG | - | chr1_4:19887261-19887280 | Msa0155020:intron | 45.0% |
| ! | GTATGTCTTGTGCTGATCTG+TGG | + | chr1_4:19888142-19888161 | None:intergenic | 45.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | - | chr1_4:19888186-19888205 | Msa0155020:intron | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1_4:19888309-19888328 | Msa0155020:CDS | 45.0% |
| !! | ACTTGGTGCGTTCAAAAAGG+AGG | - | chr1_4:19886914-19886933 | Msa0155020:CDS | 45.0% |
| ! | CTTGGTGCGTTCAAAAAGGA+GGG | - | chr1_4:19886915-19886934 | Msa0155020:CDS | 45.0% |
| CTCTTCCTCTACGATCTCTT+AGG | + | chr1_4:19886957-19886976 | None:intergenic | 45.0% | |
| GAGATCGTAGAGGAAGAGAT+TGG | - | chr1_4:19886959-19886978 | Msa0155020:intron | 45.0% | |
| ! | TTTTCCTCCTCATCCATCAC+CGG | + | chr1_4:19887153-19887172 | None:intergenic | 45.0% |
| ! | GGTGATGATAGTGACGATGA+GGG | - | chr1_4:19887261-19887280 | Msa0155020:intron | 45.0% |
| ! | GTATGTCTTGTGCTGATCTG+TGG | + | chr1_4:19888142-19888161 | None:intergenic | 45.0% |
| TTGGAAAAATGGCCGAGTCT+TGG | - | chr1_4:19888186-19888205 | Msa0155020:intron | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | - | chr1_4:19888309-19888328 | Msa0155020:CDS | 45.0% |
| CATGTCAAAGCGCGTCGTAT+TGG | - | chr1_4:19886982-19887001 | Msa0155020:intron | 50.0% | |
| GTGTGAAAAGATGCCGGTGA+TGG | - | chr1_4:19887137-19887156 | Msa0155020:intron | 50.0% | |
| !! | AAAGATGCCGGTGATGGATG+AGG | - | chr1_4:19887143-19887162 | Msa0155020:intron | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | - | chr1_4:19887182-19887201 | Msa0155020:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | - | chr1_4:19887186-19887205 | Msa0155020:CDS | 50.0% | |
| ! | GGGTGATGATAGTGACGATG+AGG | - | chr1_4:19887260-19887279 | Msa0155020:intron | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | - | chr1_4:19887272-19887291 | Msa0155020:intron | 50.0% |
| ! | GACGATGAGGGTGATGATGA+GGG | - | chr1_4:19887273-19887292 | Msa0155020:intron | 50.0% |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_4:19887958-19887977 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_4:19887955-19887974 | Msa0155020:intron | 50.0% | |
| CATGTCAAAGCGCGTCGTAT+TGG | - | chr1_4:19886982-19887001 | Msa0155020:intron | 50.0% | |
| GTGTGAAAAGATGCCGGTGA+TGG | - | chr1_4:19887137-19887156 | Msa0155020:intron | 50.0% | |
| !! | AAAGATGCCGGTGATGGATG+AGG | - | chr1_4:19887143-19887162 | Msa0155020:intron | 50.0% |
| GGAAGATGAGGAAGAGGAAG+AGG | - | chr1_4:19887182-19887201 | Msa0155020:CDS | 50.0% | |
| GATGAGGAAGAGGAAGAGGA+TGG | - | chr1_4:19887186-19887205 | Msa0155020:CDS | 50.0% | |
| ! | GGGTGATGATAGTGACGATG+AGG | - | chr1_4:19887260-19887279 | Msa0155020:intron | 50.0% |
| ! | TGACGATGAGGGTGATGATG+AGG | - | chr1_4:19887272-19887291 | Msa0155020:intron | 50.0% |
| ! | GACGATGAGGGTGATGATGA+GGG | - | chr1_4:19887273-19887292 | Msa0155020:intron | 50.0% |
| CCTTGCAGTGGCAACATACA+AGG | + | chr1_4:19887958-19887977 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | - | chr1_4:19887955-19887974 | Msa0155020:intron | 50.0% | |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | - | chr1_4:19888193-19888212 | Msa0155020:intron | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | - | chr1_4:19888194-19888213 | Msa0155020:intron | 55.0% |
| !! | AATGGCCGAGTCTTGGTGCT+AGG | - | chr1_4:19888193-19888212 | Msa0155020:intron | 55.0% |
| !! | ATGGCCGAGTCTTGGTGCTA+GGG | - | chr1_4:19888194-19888213 | Msa0155020:intron | 55.0% |
| !! | GATGCCGGTGATGGATGAGG+AGG | - | chr1_4:19887146-19887165 | Msa0155020:intron | 60.0% |
| GACATCGGAAGCAGCTCTGC+AGG | - | chr1_4:19887581-19887600 | Msa0155020:CDS | 60.0% | |
| GCCACCCTAGCACCAAGACT+CGG | + | chr1_4:19888201-19888220 | None:intergenic | 60.0% | |
| !! | GATGCCGGTGATGGATGAGG+AGG | - | chr1_4:19887146-19887165 | Msa0155020:intron | 60.0% |
| GACATCGGAAGCAGCTCTGC+AGG | - | chr1_4:19887581-19887600 | Msa0155020:CDS | 60.0% | |
| GCCACCCTAGCACCAAGACT+CGG | + | chr1_4:19888201-19888220 | None:intergenic | 60.0% | |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | - | chr1_4:19888197-19888216 | Msa0155020:intron | 65.0% |
| !! | GCCGAGTCTTGGTGCTAGGG+TGG | - | chr1_4:19888197-19888216 | Msa0155020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 19886508 | 19888345 | 19886508 | ID=Msa0155020;Name=Msa0155020 |
| chr1_4 | mRNA | 19886508 | 19888345 | 19886508 | ID=Msa0155020-mRNA-1;Parent=Msa0155020;Name=Msa0155020-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|5|0|363 |
| chr1_4 | exon | 19888274 | 19888345 | 19888274 | ID=Msa0155020-mRNA-1:exon:7350;Parent=Msa0155020-mRNA-1 |
| chr1_4 | exon | 19887394 | 19887961 | 19887394 | ID=Msa0155020-mRNA-1:exon:7349;Parent=Msa0155020-mRNA-1 |
| chr1_4 | exon | 19887150 | 19887274 | 19887150 | ID=Msa0155020-mRNA-1:exon:7348;Parent=Msa0155020-mRNA-1 |
| chr1_4 | exon | 19886877 | 19886954 | 19886877 | ID=Msa0155020-mRNA-1:exon:7347;Parent=Msa0155020-mRNA-1 |
| chr1_4 | exon | 19886508 | 19886756 | 19886508 | ID=Msa0155020-mRNA-1:exon:7346;Parent=Msa0155020-mRNA-1 |
| chr1_4 | CDS | 19888274 | 19888345 | 19888274 | ID=Msa0155020-mRNA-1:cds;Parent=Msa0155020-mRNA-1 |
| chr1_4 | CDS | 19887394 | 19887961 | 19887394 | ID=Msa0155020-mRNA-1:cds;Parent=Msa0155020-mRNA-1 |
| chr1_4 | CDS | 19887150 | 19887274 | 19887150 | ID=Msa0155020-mRNA-1:cds;Parent=Msa0155020-mRNA-1 |
| chr1_4 | CDS | 19886877 | 19886954 | 19886877 | ID=Msa0155020-mRNA-1:cds;Parent=Msa0155020-mRNA-1 |
| chr1_4 | CDS | 19886508 | 19886756 | 19886508 | ID=Msa0155020-mRNA-1:cds;Parent=Msa0155020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
