Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155060 | KEH41184.1 | 60.112 | 356 | 120 | 4 | 9 | 363 | 1 | 335 | 3.36e-131 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155060 | sp|Q9M8K2|REM21_ARATH | 22.319 | 345 | 225 | 5 | 17 | 361 | 23 | 324 | 9.15e-21 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155060 | A0A072VGK8 | 60.112 | 356 | 120 | 4 | 9 | 363 | 1 | 335 | 1.60e-131 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0155060 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155060 | MtrunA17_Chr1g0169171 | 59.752 | 323 | 108 | 4 | 42 | 363 | 1 | 302 | 2.54e-117 | 342 |
| Msa0155060 | MtrunA17_Chr1g0169081 | 90.533 | 169 | 15 | 1 | 196 | 363 | 156 | 324 | 8.64e-109 | 321 |
| Msa0155060 | MtrunA17_Chr1g0169161 | 72.674 | 172 | 45 | 1 | 191 | 362 | 164 | 333 | 1.36e-86 | 265 |
| Msa0155060 | MtrunA17_Chr3g0125151 | 69.291 | 127 | 37 | 1 | 237 | 363 | 1 | 125 | 2.58e-62 | 195 |
| Msa0155060 | MtrunA17_Chr3g0125161 | 72.800 | 125 | 34 | 0 | 5 | 129 | 8 | 132 | 3.65e-58 | 186 |
| Msa0155060 | MtrunA17_Chr1g0154191 | 25.767 | 163 | 116 | 3 | 20 | 179 | 22 | 182 | 1.07e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155060 | AT3G06160.5 | 22.319 | 345 | 225 | 5 | 17 | 361 | 8 | 309 | 6.84e-22 | 95.1 |
| Msa0155060 | AT3G06160.4 | 22.319 | 345 | 225 | 5 | 17 | 361 | 8 | 309 | 6.84e-22 | 95.1 |
| Msa0155060 | AT3G06160.3 | 22.319 | 345 | 225 | 5 | 17 | 361 | 8 | 309 | 6.84e-22 | 95.1 |
| Msa0155060 | AT3G06160.1 | 22.319 | 345 | 225 | 5 | 17 | 361 | 23 | 324 | 9.31e-22 | 95.1 |
| Msa0155060 | AT3G06160.2 | 22.319 | 345 | 225 | 5 | 17 | 361 | 67 | 368 | 2.00e-21 | 94.7 |
| Msa0155060 | AT5G57720.1 | 22.099 | 362 | 194 | 14 | 16 | 361 | 10 | 299 | 1.65e-13 | 70.9 |
| Msa0155060 | AT4G01580.1 | 31.646 | 158 | 95 | 4 | 19 | 175 | 30 | 175 | 5.15e-12 | 64.7 |
| Msa0155060 | AT3G18960.1 | 38.614 | 101 | 58 | 3 | 19 | 118 | 30 | 127 | 7.90e-12 | 64.3 |
| Msa0155060 | AT3G18960.2 | 38.614 | 101 | 58 | 3 | 19 | 118 | 30 | 127 | 8.66e-12 | 63.9 |
| Msa0155060 | AT3G53310.1 | 23.034 | 356 | 186 | 10 | 16 | 362 | 8 | 284 | 3.24e-11 | 63.9 |
Find 64 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGAAGTGTGGATTTC+CGG | 0.187944 | 1_4:-20021740 | None:intergenic |
| TGGCCATCTTAGTTACAATT+TGG | 0.218938 | 1_4:-20020757 | None:intergenic |
| AAATCCTTGATAACATTCTT+TGG | 0.259575 | 1_4:-20022078 | None:intergenic |
| TAGAGAGGAAAATTCTTTAG+AGG | 0.303868 | 1_4:+20021155 | Msa0155060:CDS |
| TGTTAAGGGTGCACATTGTT+AGG | 0.310846 | 1_4:+20022479 | Msa0155060:CDS |
| GCATCAATTTCGTCATCTTC+AGG | 0.325080 | 1_4:-20021700 | None:intergenic |
| TGCTGCTGATGATGATATTA+TGG | 0.325258 | 1_4:+20021380 | Msa0155060:CDS |
| CTTACCAGCTTTGCACTTGC+AGG | 0.327904 | 1_4:-20021541 | None:intergenic |
| AAGAATTGTACCAATTCATT+AGG | 0.342988 | 1_4:-20021781 | None:intergenic |
| AGATCATGATGATGATATTA+TGG | 0.349539 | 1_4:+20021413 | Msa0155060:CDS |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1_4:+20021485 | Msa0155060:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1_4:-20021012 | None:intergenic |
| CTCTTCCTCTGCGATCTCTT+AGG | 0.370075 | 1_4:-20021068 | None:intergenic |
| TTGTACCAATTCATTAGGTC+TGG | 0.410085 | 1_4:-20021776 | None:intergenic |
| GCAAGTACGTACCATTCTTT+CGG | 0.413520 | 1_4:-20020825 | None:intergenic |
| GCAATGAAGTGTGGATTTCC+GGG | 0.417877 | 1_4:-20021739 | None:intergenic |
| ATATTGAAAACAACATATTC+AGG | 0.423216 | 1_4:+20021202 | Msa0155060:CDS |
| ATATGTGTTCTGCTTATTTG+TGG | 0.425629 | 1_4:-20022313 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1_4:-20021011 | None:intergenic |
| TCATTCCAGACCTAATGAAT+TGG | 0.430343 | 1_4:+20021771 | Msa0155060:CDS |
| CCTTGCAGTGGCAACATTCA+AGG | 0.435374 | 1_4:-20022128 | None:intergenic |
| GTGAACTTGATGCGTTCAAA+AGG | 0.437817 | 1_4:+20021024 | Msa0155060:CDS |
| TTCAAAAGGGAGGATAATAA+AGG | 0.438286 | 1_4:+20021038 | Msa0155060:CDS |
| CATGGAGGAAAATAACAATA+TGG | 0.446533 | 1_4:+20021275 | Msa0155060:CDS |
| CATCTCTCCACGTACGTACT+TGG | 0.449196 | 1_4:-20022348 | None:intergenic |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1_4:+20021096 | Msa0155060:CDS |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1_4:+20022074 | Msa0155060:CDS |
| CAATATGGAGAATGAGGAAG+AGG | 0.480705 | 1_4:+20021290 | Msa0155060:CDS |
| GATGGTCGAGTACGTGTGCT+AGG | 0.481978 | 1_4:+20022367 | Msa0155060:CDS |
| TTGTGGCAAGATGTGATGAT+AGG | 0.486090 | 1_4:-20022296 | None:intergenic |
| GAAGAAATCTGGGTAATCCT+TGG | 0.489215 | 1_4:-20020777 | None:intergenic |
| GAGATCGCAGAGGAAGAGAT+TGG | 0.494636 | 1_4:+20021073 | Msa0155060:CDS |
| TATCCAAATTGTAACTAAGA+TGG | 0.495257 | 1_4:+20020754 | Msa0155060:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.503803 | 1_4:+20022371 | Msa0155060:CDS |
| AGAACCTGCAAGTGCAAAGC+TGG | 0.504053 | 1_4:+20021537 | Msa0155060:CDS |
| ATGGAGAATGAGGAAGAGGA+TGG | 0.520340 | 1_4:+20021294 | Msa0155060:CDS |
| ATCAATGTGTGAAAAGAAGA+AGG | 0.520397 | 1_4:+20021245 | Msa0155060:CDS |
| AAATAACAATATGGAGAATG+AGG | 0.524771 | 1_4:+20021284 | Msa0155060:CDS |
| AGAGGAAAATTCTTTAGAGG+AGG | 0.525644 | 1_4:+20021158 | Msa0155060:CDS |
| AGAGAAGCACACCGAAAGAA+TGG | 0.525778 | 1_4:+20020814 | Msa0155060:CDS |
| TGAACTTGATGCGTTCAAAA+GGG | 0.531575 | 1_4:+20021025 | Msa0155060:CDS |
| AAGGGTGCACATTGTTAGGA+AGG | 0.552584 | 1_4:+20022483 | Msa0155060:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566025 | 1_4:+20021419 | Msa0155060:CDS |
| CTTGCAGTGGCAACATTCAA+GGG | 0.578433 | 1_4:-20022127 | None:intergenic |
| CAAGTACGTACGTGGAGAGA+TGG | 0.582116 | 1_4:+20022349 | Msa0155060:CDS |
| CCTTGAATGTTGCCACTGCA+AGG | 0.583961 | 1_4:+20022128 | Msa0155060:CDS |
| TCTTTCGGTGTGCTTCTCTG+TGG | 0.592030 | 1_4:-20020810 | None:intergenic |
| AAAGAAGAAGGTAAGTGACA+TGG | 0.601455 | 1_4:+20021257 | Msa0155060:CDS |
| AATTGTAACTAAGATGGCCA+AGG | 0.605912 | 1_4:+20020760 | Msa0155060:CDS |
| GAAGAAGGTAAGTGACATGG+AGG | 0.606864 | 1_4:+20021260 | Msa0155060:CDS |
| CATGATACCGATGATGATGA+TGG | 0.612164 | 1_4:+20021450 | Msa0155060:CDS |
| ATGGTCGAGTACGTGTGCTA+GGG | 0.616130 | 1_4:+20022368 | Msa0155060:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.622095 | 1_4:+20022372 | Msa0155060:CDS |
| GTCATCACCATCATCATCAT+CGG | 0.626181 | 1_4:-20021457 | None:intergenic |
| TGATGATGATATTATGGCAG+AGG | 0.627493 | 1_4:+20021386 | Msa0155060:CDS |
| AATTATACTATACCTTGCAG+TGG | 0.634623 | 1_4:-20022140 | None:intergenic |
| AGAGAGGCCAAGTACGTACG+TGG | 0.642453 | 1_4:+20022341 | Msa0155060:CDS |
| AATGAGGAAGAGGATGGTGA+TGG | 0.647231 | 1_4:+20021300 | Msa0155060:CDS |
| GCTGAAATGTATATTCAACC+CGG | 0.655563 | 1_4:+20021721 | Msa0155060:CDS |
| AGAACACATATCGAAAAGAG+AGG | 0.666945 | 1_4:+20022325 | Msa0155060:CDS |
| TGGCTGGAAGCAATTTAGAG+AGG | 0.668552 | 1_4:+20021140 | Msa0155060:CDS |
| ACTTGATGCGTTCAAAAGGG+AGG | 0.693993 | 1_4:+20021028 | Msa0155060:CDS |
| TGATGATGATGACGATGACG+AGG | 0.734080 | 1_4:+20021326 | Msa0155060:CDS |
| TTTATCCTAAGAGATCGCAG+AGG | 0.766717 | 1_4:+20021063 | Msa0155060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTCAAAAAAAAAAAGTAA+TGG | - | chr1_4:20021812-20021831 | None:intergenic | 15.0% |
| !!! | ATTACTTTTTTTTTTTGACA+TGG | + | chr1_4:20021811-20021830 | Msa0155060:intron | 15.0% |
| !! | ATGTCAAAAAAAAAAAGTAA+TGG | - | chr1_4:20021812-20021831 | None:intergenic | 15.0% |
| !!! | ATTACTTTTTTTTTTTGACA+TGG | + | chr1_4:20021811-20021830 | Msa0155060:intron | 15.0% |
| !!! | AAAAAACTTTGAAGAAATCT+GGG | - | chr1_4:20020790-20020809 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAGAAAATTCTT+TGG | - | chr1_4:20020872-20020891 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | - | chr1_4:20021191-20021210 | None:intergenic | 20.0% |
| !! | ATATTGAAAACAACATATTC+AGG | + | chr1_4:20021202-20021221 | Msa0155060:CDS | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | - | chr1_4:20021580-20021599 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | + | chr1_4:20021640-20021659 | Msa0155060:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | - | chr1_4:20022176-20022195 | None:intergenic | 20.0% |
| !!! | AAAAAACTTTGAAGAAATCT+GGG | - | chr1_4:20020790-20020809 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAGAAAATTCTT+TGG | - | chr1_4:20020872-20020891 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | - | chr1_4:20021191-20021210 | None:intergenic | 20.0% |
| !! | ATATTGAAAACAACATATTC+AGG | + | chr1_4:20021202-20021221 | Msa0155060:CDS | 20.0% |
| !!! | CAAAATAGTAGTTTTATCTT+CGG | - | chr1_4:20021580-20021599 | None:intergenic | 20.0% |
| !!! | ATTTACCTGATGATTTATTT+TGG | + | chr1_4:20021640-20021659 | Msa0155060:intron | 20.0% |
| !! | TCATAATAGTGAAAAATGAA+AGG | - | chr1_4:20022176-20022195 | None:intergenic | 20.0% |
| ! | TATCCAAATTGTAACTAAGA+TGG | + | chr1_4:20020754-20020773 | Msa0155060:CDS | 25.0% |
| !! | GAAAAAACTTTGAAGAAATC+TGG | - | chr1_4:20020791-20020810 | None:intergenic | 25.0% |
| ! | AAAGAAAGAAAATTCTTTGG+AGG | - | chr1_4:20020869-20020888 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | + | chr1_4:20020885-20020904 | Msa0155060:intron | 25.0% |
| ! | AAATAACAATATGGAGAATG+AGG | + | chr1_4:20021284-20021303 | Msa0155060:CDS | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | + | chr1_4:20021413-20021432 | Msa0155060:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | - | chr1_4:20021648-20021667 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | + | chr1_4:20021648-20021667 | Msa0155060:intron | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | - | chr1_4:20021784-20021803 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | - | chr1_4:20021949-20021968 | None:intergenic | 25.0% |
| ! | CAAATAAAATTGCAACAACT+TGG | - | chr1_4:20021982-20022001 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | + | chr1_4:20022074-20022093 | Msa0155060:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | - | chr1_4:20022081-20022100 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | - | chr1_4:20022166-20022185 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | + | chr1_4:20022178-20022197 | Msa0155060:intron | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | - | chr1_4:20022207-20022226 | None:intergenic | 25.0% |
| ! | ATGCAAAAATCGAAATGTTA+AGG | + | chr1_4:20022464-20022483 | Msa0155060:CDS | 25.0% |
| ! | TGCAAAAATCGAAATGTTAA+GGG | + | chr1_4:20022465-20022484 | Msa0155060:CDS | 25.0% |
| ! | TATCCAAATTGTAACTAAGA+TGG | + | chr1_4:20020754-20020773 | Msa0155060:CDS | 25.0% |
| !! | GAAAAAACTTTGAAGAAATC+TGG | - | chr1_4:20020791-20020810 | None:intergenic | 25.0% |
| ! | AAAGAAAGAAAATTCTTTGG+AGG | - | chr1_4:20020869-20020888 | None:intergenic | 25.0% |
| !! | CTTTTTGATAAAAACCAGTT+TGG | + | chr1_4:20020885-20020904 | Msa0155060:intron | 25.0% |
| ! | AAATAACAATATGGAGAATG+AGG | + | chr1_4:20021284-20021303 | Msa0155060:CDS | 25.0% |
| !! | AGATCATGATGATGATATTA+TGG | + | chr1_4:20021413-20021432 | Msa0155060:CDS | 25.0% |
| ! | CTAAACCAAAATAAATCATC+AGG | - | chr1_4:20021648-20021667 | None:intergenic | 25.0% |
| !!! | GATGATTTATTTTGGTTTAG+CGG | + | chr1_4:20021648-20021667 | Msa0155060:intron | 25.0% |
| ! | AAGAATTGTACCAATTCATT+AGG | - | chr1_4:20021784-20021803 | None:intergenic | 25.0% |
| ! | AATAAAGAGAATAACTAGAC+AGG | - | chr1_4:20021949-20021968 | None:intergenic | 25.0% |
| ! | CAAATAAAATTGCAACAACT+TGG | - | chr1_4:20021982-20022001 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | + | chr1_4:20022074-20022093 | Msa0155060:CDS | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | - | chr1_4:20022081-20022100 | None:intergenic | 25.0% |
| ! | GAAAAATGAAAGGTAAAGAT+TGG | - | chr1_4:20022166-20022185 | None:intergenic | 25.0% |
| !! | CATTTTTCACTATTATGAAG+TGG | + | chr1_4:20022178-20022197 | Msa0155060:intron | 25.0% |
| ! | ATCAACACATTAAACAAAAG+TGG | - | chr1_4:20022207-20022226 | None:intergenic | 25.0% |
| ! | ATGCAAAAATCGAAATGTTA+AGG | + | chr1_4:20022464-20022483 | Msa0155060:CDS | 25.0% |
| ! | TGCAAAAATCGAAATGTTAA+GGG | + | chr1_4:20022465-20022484 | Msa0155060:CDS | 25.0% |
| TATTTCTTTGCATACCAAAC+TGG | - | chr1_4:20020902-20020921 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | - | chr1_4:20021014-20021033 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | - | chr1_4:20021015-20021034 | None:intergenic | 30.0% |
| TTCAAAAGGGAGGATAATAA+AGG | + | chr1_4:20021038-20021057 | Msa0155060:CDS | 30.0% | |
| !!! | GATGAGCTTTATTTTGACAA+TGG | + | chr1_4:20021120-20021139 | Msa0155060:CDS | 30.0% |
| TAGAGAGGAAAATTCTTTAG+AGG | + | chr1_4:20021155-20021174 | Msa0155060:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | + | chr1_4:20021245-20021264 | Msa0155060:CDS | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | + | chr1_4:20021275-20021294 | Msa0155060:CDS | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | + | chr1_4:20021485-20021504 | Msa0155060:CDS | 30.0% | |
| ! | ATACATTTTGCAATGAAGTG+TGG | - | chr1_4:20021751-20021770 | None:intergenic | 30.0% |
| ! | GATAAGAAATGACAAGTTGA+AGG | - | chr1_4:20021905-20021924 | None:intergenic | 30.0% |
| AATTATACTATACCTTGCAG+TGG | - | chr1_4:20022143-20022162 | None:intergenic | 30.0% | |
| !!! | TTGTTGCATTCATCCTTTTT+TGG | + | chr1_4:20022239-20022258 | Msa0155060:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | - | chr1_4:20022316-20022335 | None:intergenic | 30.0% | |
| TATTTCTTTGCATACCAAAC+TGG | - | chr1_4:20020902-20020921 | None:intergenic | 30.0% | |
| !! | TCAAGTTCACAAAAGCATTA+GGG | - | chr1_4:20021014-20021033 | None:intergenic | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | - | chr1_4:20021015-20021034 | None:intergenic | 30.0% |
| TTCAAAAGGGAGGATAATAA+AGG | + | chr1_4:20021038-20021057 | Msa0155060:CDS | 30.0% | |
| !!! | GATGAGCTTTATTTTGACAA+TGG | + | chr1_4:20021120-20021139 | Msa0155060:CDS | 30.0% |
| TAGAGAGGAAAATTCTTTAG+AGG | + | chr1_4:20021155-20021174 | Msa0155060:CDS | 30.0% | |
| ATCAATGTGTGAAAAGAAGA+AGG | + | chr1_4:20021245-20021264 | Msa0155060:CDS | 30.0% | |
| CATGGAGGAAAATAACAATA+TGG | + | chr1_4:20021275-20021294 | Msa0155060:CDS | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | + | chr1_4:20021485-20021504 | Msa0155060:CDS | 30.0% | |
| ! | ATACATTTTGCAATGAAGTG+TGG | - | chr1_4:20021751-20021770 | None:intergenic | 30.0% |
| ! | GATAAGAAATGACAAGTTGA+AGG | - | chr1_4:20021905-20021924 | None:intergenic | 30.0% |
| AATTATACTATACCTTGCAG+TGG | - | chr1_4:20022143-20022162 | None:intergenic | 30.0% | |
| !!! | TTGTTGCATTCATCCTTTTT+TGG | + | chr1_4:20022239-20022258 | Msa0155060:intron | 30.0% |
| ATATGTGTTCTGCTTATTTG+TGG | - | chr1_4:20022316-20022335 | None:intergenic | 30.0% | |
| TGGCCATCTTAGTTACAATT+TGG | - | chr1_4:20020760-20020779 | None:intergenic | 35.0% | |
| AATTGTAACTAAGATGGCCA+AGG | + | chr1_4:20020760-20020779 | Msa0155060:CDS | 35.0% | |
| ! | AAAATTCTTTGGAGGAAGCA+TGG | - | chr1_4:20020861-20020880 | None:intergenic | 35.0% |
| TGAACTTGATGCGTTCAAAA+GGG | + | chr1_4:20021025-20021044 | Msa0155060:CDS | 35.0% | |
| !!! | AGCTTTATTTTGACAATGGC+TGG | + | chr1_4:20021124-20021143 | Msa0155060:CDS | 35.0% |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | + | chr1_4:20021158-20021177 | Msa0155060:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | + | chr1_4:20021257-20021276 | Msa0155060:CDS | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | + | chr1_4:20021380-20021399 | Msa0155060:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_4:20021386-20021405 | Msa0155060:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_4:20021386-20021405 | Msa0155060:CDS | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | + | chr1_4:20021655-20021674 | Msa0155060:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | + | chr1_4:20021656-20021675 | Msa0155060:intron | 35.0% |
| GCTGAAATGTATATTCAACC+CGG | + | chr1_4:20021721-20021740 | Msa0155060:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | + | chr1_4:20021771-20021790 | Msa0155060:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | - | chr1_4:20021779-20021798 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | - | chr1_4:20022053-20022072 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | + | chr1_4:20022249-20022268 | Msa0155060:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | - | chr1_4:20022255-20022274 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | + | chr1_4:20022325-20022344 | Msa0155060:CDS | 35.0% | |
| TGGCCATCTTAGTTACAATT+TGG | - | chr1_4:20020760-20020779 | None:intergenic | 35.0% | |
| AATTGTAACTAAGATGGCCA+AGG | + | chr1_4:20020760-20020779 | Msa0155060:CDS | 35.0% | |
| ! | AAAATTCTTTGGAGGAAGCA+TGG | - | chr1_4:20020861-20020880 | None:intergenic | 35.0% |
| TGAACTTGATGCGTTCAAAA+GGG | + | chr1_4:20021025-20021044 | Msa0155060:CDS | 35.0% | |
| !!! | AGCTTTATTTTGACAATGGC+TGG | + | chr1_4:20021124-20021143 | Msa0155060:CDS | 35.0% |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | + | chr1_4:20021158-20021177 | Msa0155060:CDS | 35.0% |
| AAAGAAGAAGGTAAGTGACA+TGG | + | chr1_4:20021257-20021276 | Msa0155060:CDS | 35.0% | |
| ! | TGCTGCTGATGATGATATTA+TGG | + | chr1_4:20021380-20021399 | Msa0155060:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_4:20021386-20021405 | Msa0155060:CDS | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | + | chr1_4:20021386-20021405 | Msa0155060:CDS | 35.0% |
| !!! | TATTTTGGTTTAGCGGACAT+TGG | + | chr1_4:20021655-20021674 | Msa0155060:intron | 35.0% |
| !!! | ATTTTGGTTTAGCGGACATT+GGG | + | chr1_4:20021656-20021675 | Msa0155060:intron | 35.0% |
| GCTGAAATGTATATTCAACC+CGG | + | chr1_4:20021721-20021740 | Msa0155060:CDS | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | + | chr1_4:20021771-20021790 | Msa0155060:CDS | 35.0% | |
| TTGTACCAATTCATTAGGTC+TGG | - | chr1_4:20021779-20021798 | None:intergenic | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | - | chr1_4:20022053-20022072 | None:intergenic | 35.0% | |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | + | chr1_4:20022249-20022268 | Msa0155060:intron | 35.0% |
| TGTCCTGTCATAACCAAAAA+AGG | - | chr1_4:20022255-20022274 | None:intergenic | 35.0% | |
| AGAACACATATCGAAAAGAG+AGG | + | chr1_4:20022325-20022344 | Msa0155060:CDS | 35.0% | |
| GAAGAAATCTGGGTAATCCT+TGG | - | chr1_4:20020780-20020799 | None:intergenic | 40.0% | |
| GCAAGTACGTACCATTCTTT+CGG | - | chr1_4:20020828-20020847 | None:intergenic | 40.0% | |
| GTGAACTTGATGCGTTCAAA+AGG | + | chr1_4:20021024-20021043 | Msa0155060:CDS | 40.0% | |
| TTTATCCTAAGAGATCGCAG+AGG | + | chr1_4:20021063-20021082 | Msa0155060:CDS | 40.0% | |
| CAATATGGAGAATGAGGAAG+AGG | + | chr1_4:20021290-20021309 | Msa0155060:CDS | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | + | chr1_4:20021450-20021469 | Msa0155060:CDS | 40.0% |
| GTCATCACCATCATCATCAT+CGG | - | chr1_4:20021460-20021479 | None:intergenic | 40.0% | |
| GCATCAATTTCGTCATCTTC+AGG | - | chr1_4:20021703-20021722 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | - | chr1_4:20021743-20021762 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | + | chr1_4:20021855-20021874 | Msa0155060:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | - | chr1_4:20021862-20021881 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | + | chr1_4:20021861-20021880 | Msa0155060:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | - | chr1_4:20021934-20021953 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_4:20022107-20022126 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | - | chr1_4:20022299-20022318 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | + | chr1_4:20022479-20022498 | Msa0155060:CDS | 40.0% |
| GAAGAAATCTGGGTAATCCT+TGG | - | chr1_4:20020780-20020799 | None:intergenic | 40.0% | |
| GCAAGTACGTACCATTCTTT+CGG | - | chr1_4:20020828-20020847 | None:intergenic | 40.0% | |
| GTGAACTTGATGCGTTCAAA+AGG | + | chr1_4:20021024-20021043 | Msa0155060:CDS | 40.0% | |
| TTTATCCTAAGAGATCGCAG+AGG | + | chr1_4:20021063-20021082 | Msa0155060:CDS | 40.0% | |
| CAATATGGAGAATGAGGAAG+AGG | + | chr1_4:20021290-20021309 | Msa0155060:CDS | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | + | chr1_4:20021450-20021469 | Msa0155060:CDS | 40.0% |
| GTCATCACCATCATCATCAT+CGG | - | chr1_4:20021460-20021479 | None:intergenic | 40.0% | |
| GCATCAATTTCGTCATCTTC+AGG | - | chr1_4:20021703-20021722 | None:intergenic | 40.0% | |
| TGCAATGAAGTGTGGATTTC+CGG | - | chr1_4:20021743-20021762 | None:intergenic | 40.0% | |
| TAGTCCATTTGCTTAACCCT+AGG | + | chr1_4:20021855-20021874 | Msa0155060:intron | 40.0% | |
| TCTACCTAGGGTTAAGCAAA+TGG | - | chr1_4:20021862-20021881 | None:intergenic | 40.0% | |
| ATTTGCTTAACCCTAGGTAG+AGG | + | chr1_4:20021861-20021880 | Msa0155060:intron | 40.0% | |
| TAGACAGGCATAGAGTACAA+AGG | - | chr1_4:20021934-20021953 | None:intergenic | 40.0% | |
| ! | TGACATGTTTTGTGAAGCAG+AGG | - | chr1_4:20022107-20022126 | None:intergenic | 40.0% |
| TTGTGGCAAGATGTGATGAT+AGG | - | chr1_4:20022299-20022318 | None:intergenic | 40.0% | |
| ! | TGTTAAGGGTGCACATTGTT+AGG | + | chr1_4:20022479-20022498 | Msa0155060:CDS | 40.0% |
| ! | AGAGAAGCACACCGAAAGAA+TGG | + | chr1_4:20020814-20020833 | Msa0155060:CDS | 45.0% |
| ACTTGATGCGTTCAAAAGGG+AGG | + | chr1_4:20021028-20021047 | Msa0155060:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | + | chr1_4:20021096-20021115 | Msa0155060:CDS | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | + | chr1_4:20021140-20021159 | Msa0155060:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | + | chr1_4:20021260-20021279 | Msa0155060:CDS | 45.0% | |
| ATGGAGAATGAGGAAGAGGA+TGG | + | chr1_4:20021294-20021313 | Msa0155060:CDS | 45.0% | |
| AATGAGGAAGAGGATGGTGA+TGG | + | chr1_4:20021300-20021319 | Msa0155060:CDS | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | + | chr1_4:20021326-20021345 | Msa0155060:CDS | 45.0% |
| GCAATGAAGTGTGGATTTCC+GGG | - | chr1_4:20021742-20021761 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | - | chr1_4:20021874-20021893 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | - | chr1_4:20021875-20021894 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | - | chr1_4:20022130-20022149 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_4:20022483-20022502 | Msa0155060:CDS | 45.0% |
| ! | AGAGAAGCACACCGAAAGAA+TGG | + | chr1_4:20020814-20020833 | Msa0155060:CDS | 45.0% |
| ACTTGATGCGTTCAAAAGGG+AGG | + | chr1_4:20021028-20021047 | Msa0155060:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | + | chr1_4:20021096-20021115 | Msa0155060:CDS | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | + | chr1_4:20021140-20021159 | Msa0155060:CDS | 45.0% | |
| GAAGAAGGTAAGTGACATGG+AGG | + | chr1_4:20021260-20021279 | Msa0155060:CDS | 45.0% | |
| ATGGAGAATGAGGAAGAGGA+TGG | + | chr1_4:20021294-20021313 | Msa0155060:CDS | 45.0% | |
| AATGAGGAAGAGGATGGTGA+TGG | + | chr1_4:20021300-20021319 | Msa0155060:CDS | 45.0% | |
| ! | TGATGATGATGACGATGACG+AGG | + | chr1_4:20021326-20021345 | Msa0155060:CDS | 45.0% |
| GCAATGAAGTGTGGATTTCC+GGG | - | chr1_4:20021742-20021761 | None:intergenic | 45.0% | |
| TCGACTAACTCCTCTACCTA+GGG | - | chr1_4:20021874-20021893 | None:intergenic | 45.0% | |
| TTCGACTAACTCCTCTACCT+AGG | - | chr1_4:20021875-20021894 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATTCAA+GGG | - | chr1_4:20022130-20022149 | None:intergenic | 45.0% | |
| ! | AAGGGTGCACATTGTTAGGA+AGG | + | chr1_4:20022483-20022502 | Msa0155060:CDS | 45.0% |
| ! | TCTTTCGGTGTGCTTCTCTG+TGG | - | chr1_4:20020813-20020832 | None:intergenic | 50.0% |
| CTCTTCCTCTGCGATCTCTT+AGG | - | chr1_4:20021071-20021090 | None:intergenic | 50.0% | |
| GAGATCGCAGAGGAAGAGAT+TGG | + | chr1_4:20021073-20021092 | Msa0155060:CDS | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | + | chr1_4:20021537-20021556 | Msa0155060:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | - | chr1_4:20021544-20021563 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | - | chr1_4:20022131-20022150 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | + | chr1_4:20022128-20022147 | Msa0155060:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | - | chr1_4:20022351-20022370 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | + | chr1_4:20022349-20022368 | Msa0155060:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | + | chr1_4:20022368-20022387 | Msa0155060:CDS | 50.0% | |
| ! | TCTTTCGGTGTGCTTCTCTG+TGG | - | chr1_4:20020813-20020832 | None:intergenic | 50.0% |
| CTCTTCCTCTGCGATCTCTT+AGG | - | chr1_4:20021071-20021090 | None:intergenic | 50.0% | |
| GAGATCGCAGAGGAAGAGAT+TGG | + | chr1_4:20021073-20021092 | Msa0155060:CDS | 50.0% | |
| AGAACCTGCAAGTGCAAAGC+TGG | + | chr1_4:20021537-20021556 | Msa0155060:CDS | 50.0% | |
| CTTACCAGCTTTGCACTTGC+AGG | - | chr1_4:20021544-20021563 | None:intergenic | 50.0% | |
| CCTTGCAGTGGCAACATTCA+AGG | - | chr1_4:20022131-20022150 | None:intergenic | 50.0% | |
| CCTTGAATGTTGCCACTGCA+AGG | + | chr1_4:20022128-20022147 | Msa0155060:CDS | 50.0% | |
| CATCTCTCCACGTACGTACT+TGG | - | chr1_4:20022351-20022370 | None:intergenic | 50.0% | |
| CAAGTACGTACGTGGAGAGA+TGG | + | chr1_4:20022349-20022368 | Msa0155060:CDS | 50.0% | |
| ATGGTCGAGTACGTGTGCTA+GGG | + | chr1_4:20022368-20022387 | Msa0155060:CDS | 50.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | + | chr1_4:20022341-20022360 | Msa0155060:CDS | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | + | chr1_4:20022367-20022386 | Msa0155060:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | + | chr1_4:20022372-20022391 | Msa0155060:CDS | 55.0% | |
| AGAGAGGCCAAGTACGTACG+TGG | + | chr1_4:20022341-20022360 | Msa0155060:CDS | 55.0% | |
| GATGGTCGAGTACGTGTGCT+AGG | + | chr1_4:20022367-20022386 | Msa0155060:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | + | chr1_4:20022372-20022391 | Msa0155060:CDS | 55.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | + | chr1_4:20022371-20022390 | Msa0155060:CDS | 60.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | + | chr1_4:20022371-20022390 | Msa0155060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 20020740 | 20022510 | 20020740 | ID=Msa0155060;Name=Msa0155060 |
| chr1_4 | mRNA | 20020740 | 20022510 | 20020740 | ID=Msa0155060-mRNA-1;Parent=Msa0155060;Name=Msa0155060-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|5|0|363 |
| chr1_4 | exon | 20020740 | 20020835 | 20020740 | ID=Msa0155060-mRNA-1:exon:7359;Parent=Msa0155060-mRNA-1 |
| chr1_4 | exon | 20021006 | 20021558 | 20021006 | ID=Msa0155060-mRNA-1:exon:7360;Parent=Msa0155060-mRNA-1 |
| chr1_4 | exon | 20021668 | 20021792 | 20021668 | ID=Msa0155060-mRNA-1:exon:7361;Parent=Msa0155060-mRNA-1 |
| chr1_4 | exon | 20022072 | 20022149 | 20022072 | ID=Msa0155060-mRNA-1:exon:7362;Parent=Msa0155060-mRNA-1 |
| chr1_4 | exon | 20022271 | 20022510 | 20022271 | ID=Msa0155060-mRNA-1:exon:7363;Parent=Msa0155060-mRNA-1 |
| chr1_4 | CDS | 20020740 | 20020835 | 20020740 | ID=Msa0155060-mRNA-1:cds;Parent=Msa0155060-mRNA-1 |
| chr1_4 | CDS | 20021006 | 20021558 | 20021006 | ID=Msa0155060-mRNA-1:cds;Parent=Msa0155060-mRNA-1 |
| chr1_4 | CDS | 20021668 | 20021792 | 20021668 | ID=Msa0155060-mRNA-1:cds;Parent=Msa0155060-mRNA-1 |
| chr1_4 | CDS | 20022072 | 20022149 | 20022072 | ID=Msa0155060-mRNA-1:cds;Parent=Msa0155060-mRNA-1 |
| chr1_4 | CDS | 20022271 | 20022510 | 20022271 | ID=Msa0155060-mRNA-1:cds;Parent=Msa0155060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
