Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156360 | CAA65982.1 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 1.78e-90 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156360 | sp|Q8LG64|CKB22_ARATH | 84.615 | 130 | 20 | 0 | 11 | 140 | 9 | 138 | 1.50e-73 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156360 | P93323 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 8.48e-91 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156360 | MtrunA17_Chr1g0187371 | 97.857 | 140 | 3 | 0 | 1 | 140 | 1 | 140 | 1.92e-94 | 277 |
| Msa0156360 | MtrunA17_Chr4g0002001 | 58.209 | 134 | 47 | 2 | 16 | 140 | 2 | 135 | 3.30e-44 | 149 |
| Msa0156360 | MtrunA17_Chr4g0051261 | 47.200 | 125 | 58 | 3 | 16 | 140 | 2 | 118 | 1.08e-30 | 113 |
| Msa0156360 | MtrunA17_Chr2g0293491 | 45.600 | 125 | 60 | 3 | 16 | 140 | 2 | 118 | 3.52e-29 | 109 |
| Msa0156360 | MtrunA17_Chr3g0093571 | 38.462 | 156 | 76 | 5 | 1 | 140 | 3 | 154 | 1.31e-20 | 88.2 |
| Msa0156360 | MtrunA17_Chr3g0093391 | 40.441 | 136 | 66 | 4 | 16 | 140 | 21 | 152 | 4.58e-20 | 86.7 |
| Msa0156360 | MtrunA17_Chr1g0201571 | 36.232 | 138 | 80 | 4 | 4 | 140 | 111 | 241 | 3.02e-18 | 81.6 |
| Msa0156360 | MtrunA17_Chr8g0358921 | 38.095 | 126 | 73 | 3 | 16 | 140 | 45 | 166 | 8.97e-18 | 79.7 |
| Msa0156360 | MtrunA17_Chr3g0130781 | 35.211 | 142 | 82 | 5 | 16 | 153 | 16 | 151 | 1.59e-17 | 79.3 |
| Msa0156360 | MtrunA17_Chr8g0377071 | 36.601 | 153 | 86 | 5 | 3 | 153 | 368 | 511 | 3.21e-17 | 79.0 |
| Msa0156360 | MtrunA17_Chr3g0099951 | 41.085 | 129 | 61 | 5 | 16 | 140 | 12 | 129 | 4.96e-17 | 77.8 |
| Msa0156360 | MtrunA17_Chr3g0122781 | 39.130 | 138 | 75 | 4 | 16 | 153 | 414 | 542 | 5.40e-17 | 78.2 |
| Msa0156360 | MtrunA17_Chr8g0383451 | 40.171 | 117 | 63 | 3 | 24 | 140 | 4 | 113 | 1.84e-16 | 76.3 |
| Msa0156360 | MtrunA17_Chr8g0385971 | 40.650 | 123 | 66 | 3 | 18 | 140 | 90 | 205 | 3.81e-16 | 75.5 |
| Msa0156360 | MtrunA17_Chr6g0483151 | 40.157 | 127 | 63 | 4 | 16 | 140 | 12 | 127 | 1.07e-15 | 73.9 |
| Msa0156360 | MtrunA17_Chr5g0396361 | 39.200 | 125 | 69 | 3 | 16 | 140 | 138 | 255 | 1.39e-15 | 73.9 |
| Msa0156360 | MtrunA17_Chr4g0057791 | 40.164 | 122 | 68 | 3 | 18 | 139 | 218 | 334 | 1.52e-15 | 73.9 |
| Msa0156360 | MtrunA17_Chr4g0040141 | 35.433 | 127 | 75 | 3 | 14 | 140 | 125 | 244 | 3.05e-15 | 73.2 |
| Msa0156360 | MtrunA17_Chr2g0286421 | 38.686 | 137 | 76 | 4 | 5 | 140 | 88 | 217 | 3.16e-15 | 72.8 |
| Msa0156360 | MtrunA17_Chr2g0317501 | 38.400 | 125 | 70 | 3 | 16 | 140 | 132 | 249 | 3.20e-15 | 73.2 |
| Msa0156360 | MtrunA17_Chr3g0131861 | 39.370 | 127 | 66 | 4 | 16 | 140 | 95 | 212 | 1.05e-14 | 71.2 |
| Msa0156360 | MtrunA17_Chr2g0324461 | 36.220 | 127 | 74 | 3 | 14 | 140 | 137 | 256 | 3.06e-14 | 70.1 |
| Msa0156360 | MtrunA17_Chr4g0061141 | 37.984 | 129 | 65 | 4 | 16 | 140 | 103 | 220 | 3.14e-14 | 70.1 |
| Msa0156360 | MtrunA17_Chr7g0218071 | 45.192 | 104 | 52 | 3 | 5 | 107 | 106 | 205 | 4.57e-14 | 69.7 |
| Msa0156360 | MtrunA17_Chr1g0191221 | 38.400 | 125 | 70 | 3 | 16 | 140 | 120 | 237 | 9.45e-14 | 68.6 |
| Msa0156360 | MtrunA17_Chr6g0453711 | 36.000 | 125 | 73 | 3 | 16 | 140 | 108 | 225 | 9.45e-14 | 68.6 |
| Msa0156360 | MtrunA17_Chr4g0066691 | 35.766 | 137 | 80 | 4 | 5 | 140 | 90 | 219 | 4.02e-13 | 67.0 |
| Msa0156360 | MtrunA17_Chr7g0273601 | 38.636 | 132 | 60 | 7 | 16 | 140 | 105 | 222 | 8.34e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156360 | AT1G20930.1 | 84.615 | 130 | 20 | 0 | 11 | 140 | 9 | 138 | 1.52e-74 | 227 |
| Msa0156360 | AT1G76540.1 | 83.206 | 131 | 22 | 0 | 10 | 140 | 6 | 136 | 3.54e-74 | 226 |
| Msa0156360 | AT3G54180.1 | 60.606 | 132 | 45 | 2 | 16 | 140 | 2 | 133 | 1.46e-43 | 147 |
| Msa0156360 | AT2G38620.3 | 58.519 | 135 | 45 | 4 | 16 | 140 | 2 | 135 | 5.55e-41 | 139 |
| Msa0156360 | AT2G38620.1 | 58.519 | 135 | 45 | 4 | 16 | 140 | 2 | 135 | 5.55e-41 | 139 |
| Msa0156360 | AT2G38620.2 | 58.519 | 135 | 45 | 4 | 16 | 140 | 2 | 135 | 4.55e-40 | 138 |
| Msa0156360 | AT3G48750.1 | 44.800 | 125 | 61 | 3 | 16 | 140 | 2 | 118 | 2.53e-29 | 110 |
| Msa0156360 | AT1G67580.1 | 40.323 | 124 | 67 | 3 | 16 | 139 | 404 | 520 | 1.01e-22 | 95.1 |
| Msa0156360 | AT1G67580.2 | 40.323 | 124 | 67 | 3 | 16 | 139 | 404 | 520 | 1.01e-22 | 95.1 |
| Msa0156360 | AT5G10270.1 | 41.912 | 136 | 64 | 4 | 16 | 140 | 24 | 155 | 6.79e-21 | 89.7 |
| Msa0156360 | AT5G64960.1 | 41.912 | 136 | 64 | 4 | 16 | 140 | 24 | 155 | 1.10e-20 | 89.0 |
| Msa0156360 | AT1G66750.1 | 40.845 | 142 | 66 | 5 | 1 | 140 | 1 | 126 | 2.04e-19 | 84.3 |
| Msa0156360 | AT1G71530.1 | 41.600 | 125 | 66 | 3 | 16 | 140 | 145 | 262 | 7.78e-18 | 80.9 |
| Msa0156360 | AT1G18040.1 | 41.322 | 121 | 62 | 4 | 20 | 140 | 14 | 125 | 4.39e-17 | 78.2 |
| Msa0156360 | AT1G73690.1 | 37.600 | 125 | 69 | 4 | 16 | 140 | 9 | 124 | 5.34e-17 | 78.2 |
| Msa0156360 | AT1G71530.4 | 41.600 | 125 | 66 | 3 | 16 | 140 | 145 | 262 | 1.29e-16 | 76.6 |
| Msa0156360 | AT1G18670.3 | 40.000 | 125 | 68 | 3 | 16 | 140 | 129 | 246 | 1.66e-16 | 77.0 |
| Msa0156360 | AT1G18670.2 | 40.000 | 125 | 68 | 3 | 16 | 140 | 129 | 246 | 1.73e-16 | 77.0 |
| Msa0156360 | AT1G71530.3 | 41.600 | 125 | 66 | 3 | 16 | 140 | 145 | 262 | 1.81e-16 | 76.6 |
| Msa0156360 | AT1G18670.1 | 40.000 | 125 | 68 | 3 | 16 | 140 | 129 | 246 | 2.00e-16 | 77.0 |
| Msa0156360 | AT1G71530.2 | 41.600 | 125 | 66 | 3 | 16 | 140 | 145 | 262 | 2.72e-16 | 76.3 |
| Msa0156360 | AT1G03740.1 | 40.310 | 129 | 58 | 4 | 18 | 140 | 213 | 328 | 5.96e-16 | 75.5 |
| Msa0156360 | AT1G09600.1 | 38.400 | 125 | 70 | 3 | 16 | 140 | 161 | 278 | 9.64e-16 | 74.7 |
| Msa0156360 | AT5G63610.1 | 33.974 | 156 | 94 | 6 | 16 | 168 | 23 | 172 | 1.20e-15 | 74.3 |
| Msa0156360 | AT1G57700.1 | 38.760 | 129 | 68 | 4 | 14 | 140 | 142 | 261 | 1.59e-15 | 74.3 |
| Msa0156360 | AT3G05050.3 | 37.410 | 139 | 75 | 5 | 5 | 140 | 124 | 253 | 1.71e-15 | 73.9 |
| Msa0156360 | AT3G05050.2 | 37.410 | 139 | 75 | 5 | 5 | 140 | 124 | 253 | 1.71e-15 | 73.9 |
| Msa0156360 | AT3G05050.1 | 37.410 | 139 | 75 | 5 | 5 | 140 | 124 | 253 | 1.71e-15 | 73.9 |
| Msa0156360 | AT5G39420.1 | 38.760 | 129 | 64 | 5 | 16 | 140 | 103 | 220 | 1.76e-15 | 73.9 |
| Msa0156360 | AT5G44290.2 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 2.03e-15 | 73.9 |
| Msa0156360 | AT5G44290.5 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 2.03e-15 | 73.9 |
| Msa0156360 | AT5G44290.4 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 2.03e-15 | 73.9 |
| Msa0156360 | AT5G44290.1 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 2.03e-15 | 73.9 |
| Msa0156360 | AT5G44290.3 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 2.03e-15 | 73.9 |
| Msa0156360 | AT5G63370.9 | 35.000 | 140 | 79 | 5 | 18 | 153 | 163 | 294 | 2.68e-15 | 73.2 |
| Msa0156360 | AT5G63370.2 | 34.194 | 155 | 89 | 6 | 4 | 153 | 148 | 294 | 3.41e-15 | 73.2 |
| Msa0156360 | AT5G63370.3 | 34.194 | 155 | 89 | 6 | 4 | 153 | 148 | 294 | 3.41e-15 | 73.2 |
| Msa0156360 | AT5G63370.5 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 4.39e-15 | 72.8 |
| Msa0156360 | AT5G63370.10 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 4.39e-15 | 72.8 |
| Msa0156360 | AT5G63370.7 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 6.44e-15 | 72.4 |
| Msa0156360 | AT5G63370.8 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 6.44e-15 | 72.4 |
| Msa0156360 | AT5G63370.4 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 6.44e-15 | 72.4 |
| Msa0156360 | AT5G63370.6 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 6.44e-15 | 72.4 |
| Msa0156360 | AT5G63370.1 | 35.000 | 140 | 79 | 5 | 18 | 153 | 297 | 428 | 6.44e-15 | 72.4 |
| Msa0156360 | AT1G03740.2 | 40.310 | 129 | 58 | 4 | 18 | 140 | 213 | 328 | 1.07e-14 | 72.0 |
| Msa0156360 | AT4G10010.2 | 40.800 | 125 | 67 | 3 | 16 | 140 | 154 | 271 | 1.17e-14 | 71.6 |
| Msa0156360 | AT1G33770.1 | 40.000 | 125 | 68 | 3 | 16 | 140 | 139 | 256 | 1.27e-14 | 71.6 |
| Msa0156360 | AT1G74330.1 | 39.844 | 128 | 64 | 4 | 16 | 140 | 119 | 236 | 2.19e-14 | 70.9 |
| Msa0156360 | AT1G74330.2 | 39.844 | 128 | 64 | 4 | 16 | 140 | 119 | 236 | 2.88e-14 | 70.5 |
| Msa0156360 | AT1G74330.3 | 39.844 | 128 | 64 | 4 | 16 | 140 | 119 | 236 | 2.93e-14 | 70.5 |
| Msa0156360 | AT3G01085.1 | 36.800 | 125 | 72 | 3 | 16 | 140 | 113 | 230 | 3.36e-14 | 70.5 |
| Msa0156360 | AT3G01085.2 | 36.800 | 125 | 72 | 3 | 16 | 140 | 113 | 230 | 3.36e-14 | 70.5 |
| Msa0156360 | AT3G01085.3 | 36.800 | 125 | 72 | 3 | 16 | 140 | 113 | 230 | 3.36e-14 | 70.5 |
| Msa0156360 | AT5G44290.7 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 3.42e-14 | 70.5 |
| Msa0156360 | AT5G50860.2 | 39.516 | 124 | 66 | 4 | 18 | 140 | 114 | 229 | 3.55e-14 | 70.1 |
| Msa0156360 | AT5G44290.6 | 39.024 | 123 | 68 | 3 | 18 | 140 | 137 | 252 | 3.76e-14 | 70.1 |
| Msa0156360 | AT5G50860.1 | 38.211 | 123 | 69 | 3 | 18 | 140 | 114 | 229 | 4.73e-14 | 70.1 |
| Msa0156360 | AT1G54610.1 | 37.594 | 133 | 60 | 6 | 16 | 140 | 116 | 233 | 5.44e-14 | 69.7 |
| Msa0156360 | AT1G54610.3 | 37.594 | 133 | 60 | 6 | 16 | 140 | 116 | 233 | 5.44e-14 | 69.7 |
| Msa0156360 | AT1G54610.2 | 37.594 | 133 | 60 | 6 | 16 | 140 | 116 | 233 | 5.44e-14 | 69.7 |
| Msa0156360 | AT1G53050.2 | 43.478 | 92 | 48 | 2 | 16 | 107 | 132 | 219 | 2.34e-13 | 68.2 |
| Msa0156360 | AT1G53050.1 | 43.478 | 92 | 48 | 2 | 16 | 107 | 132 | 219 | 2.34e-13 | 68.2 |
| Msa0156360 | AT4G22940.1 | 32.919 | 161 | 100 | 5 | 5 | 164 | 89 | 242 | 8.00e-13 | 66.2 |
| Msa0156360 | AT4G22940.2 | 32.919 | 161 | 100 | 5 | 5 | 164 | 89 | 242 | 1.44e-12 | 65.5 |
| Msa0156360 | AT2G38620.4 | 75.610 | 41 | 10 | 0 | 16 | 56 | 2 | 42 | 3.79e-12 | 63.2 |
Find 39 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTATTTCTGGAATTT+TGG | 0.114984 | 1_4:+22361717 | Msa0156360:CDS |
| AATGGTGATTCTGTTATTTC+TGG | 0.119534 | 1_4:+22361709 | Msa0156360:CDS |
| TGGATTTGAAATATTATTTA+TGG | 0.130336 | 1_4:+22361683 | Msa0156360:CDS |
| AAATATTATTTATGGTTTAA+TGG | 0.188145 | 1_4:+22361691 | Msa0156360:CDS |
| TTGTGTTGTTCTTGGTAAAA+TGG | 0.258914 | 1_4:+22361761 | Msa0156360:CDS |
| AGGGAAAACTGTGTTGTATT+TGG | 0.261009 | 1_4:+22361410 | Msa0156360:CDS |
| AAGAAATTAACATACTTTGA+TGG | 0.359794 | 1_4:-22361511 | None:intergenic |
| ATTAACATACTTTGATGGTT+GGG | 0.393821 | 1_4:-22361506 | None:intergenic |
| CACTACTGCGATTGTTTCAC+CGG | 0.398610 | 1_4:-22361060 | None:intergenic |
| CTCATGATCCACATGTTGTT+AGG | 0.404736 | 1_4:+22361267 | Msa0156360:CDS |
| AACAATCGCAGTAGTGTTAT+CGG | 0.409220 | 1_4:+22361067 | Msa0156360:CDS |
| TTTGTGGTTGCTTTCTGCCA+TGG | 0.421970 | 1_4:+22361650 | Msa0156360:CDS |
| GAAACCTCGCGAAGCGTAGT+AGG | 0.445811 | 1_4:-22361227 | None:intergenic |
| AATTAACATACTTTGATGGT+TGG | 0.452118 | 1_4:-22361507 | None:intergenic |
| TTGGTTCATAGTGTTCTTCA+AGG | 0.457308 | 1_4:+22361736 | Msa0156360:CDS |
| TTAACATACTTTGATGGTTG+GGG | 0.473395 | 1_4:-22361505 | None:intergenic |
| AGAGCAAGAGAGAAAGCTAC+TGG | 0.475204 | 1_4:+22361149 | Msa0156360:CDS |
| TTCGAGAAGCTCGAGAAAGT+TGG | 0.501777 | 1_4:+22361101 | Msa0156360:CDS |
| TTTGATGTATCAACTTTGCA+AGG | 0.507138 | 1_4:+22361618 | Msa0156360:CDS |
| CTGATCTTAAGAAATTCATT+CGG | 0.515537 | 1_4:+22361451 | Msa0156360:CDS |
| AAAGTTGGAGGAGGAACGTA+CGG | 0.523551 | 1_4:+22361116 | Msa0156360:CDS |
| CGCAGTAGTGTTATCGGCGA+AGG | 0.529473 | 1_4:+22361073 | Msa0156360:CDS |
| TCCTCCTACTACGCTTCGCG+AGG | 0.556697 | 1_4:+22361223 | Msa0156360:CDS |
| GAGAAGCTCGAGAAAGTTGG+AGG | 0.563232 | 1_4:+22361104 | Msa0156360:CDS |
| CGTCTTCATGAAGATGATGA+AGG | 0.573237 | 1_4:+22361197 | Msa0156360:CDS |
| ACCTCGCGAAGCGTAGTAGG+AGG | 0.577549 | 1_4:-22361224 | None:intergenic |
| AACAAGGACAAAACAAGGAA+GGG | 0.584761 | 1_4:+22361391 | Msa0156360:CDS |
| AAACAAGGACAAAACAAGGA+AGG | 0.590466 | 1_4:+22361390 | Msa0156360:CDS |
| AAGCTCGAGAAAGTTGGAGG+AGG | 0.601692 | 1_4:+22361107 | Msa0156360:CDS |
| TTGATGTATCAACTTTGCAA+GGG | 0.602717 | 1_4:+22361619 | Msa0156360:CDS |
| TTAACTTACCTAACAACATG+TGG | 0.608876 | 1_4:-22361275 | None:intergenic |
| TAACATACTTTGATGGTTGG+GGG | 0.617575 | 1_4:-22361504 | None:intergenic |
| GAGCAAGAGAGAAAGCTACT+GGG | 0.629277 | 1_4:+22361150 | Msa0156360:CDS |
| AAGTTGGAGGAGGAACGTAC+GGG | 0.630808 | 1_4:+22361117 | Msa0156360:CDS |
| ACTACTGCGATTGTTTCACC+GGG | 0.640436 | 1_4:-22361059 | None:intergenic |
| TGGAGGAGGAACGTACGGGA+AGG | 0.646655 | 1_4:+22361121 | Msa0156360:CDS |
| GATTCAATCATGGAGAAACC+CGG | 0.652544 | 1_4:+22361041 | None:intergenic |
| TGTGAAACAAGGACAAAACA+AGG | 0.655699 | 1_4:+22361386 | Msa0156360:CDS |
| AGGTTGTTGGATGTGAAACA+AGG | 0.680859 | 1_4:+22361375 | Msa0156360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATTTATGGTTTAA+TGG | + | chr1_4:22361691-22361710 | Msa0156360:CDS | 10.0% |
| !! | AAATATTATTTATGGTTTAA+TGG | + | chr1_4:22361691-22361710 | Msa0156360:CDS | 10.0% |
| !! | TTGAAATTGAAAACAATTTA+GGG | - | chr1_4:22361301-22361320 | None:intergenic | 15.0% |
| !! | ATTGAAATTGAAAACAATTT+AGG | - | chr1_4:22361302-22361321 | None:intergenic | 15.0% |
| !! | AATTTCAATTCAATTTCAAT+TGG | + | chr1_4:22361313-22361332 | Msa0156360:intron | 15.0% |
| !!! | TTTCAATTGGATTTAAAATT+AGG | + | chr1_4:22361326-22361345 | Msa0156360:intron | 15.0% |
| !!! | TGGATTTGAAATATTATTTA+TGG | + | chr1_4:22361683-22361702 | Msa0156360:CDS | 15.0% |
| !! | TTGAAATTGAAAACAATTTA+GGG | - | chr1_4:22361301-22361320 | None:intergenic | 15.0% |
| !! | ATTGAAATTGAAAACAATTT+AGG | - | chr1_4:22361302-22361321 | None:intergenic | 15.0% |
| !! | AATTTCAATTCAATTTCAAT+TGG | + | chr1_4:22361313-22361332 | Msa0156360:intron | 15.0% |
| !!! | TTTCAATTGGATTTAAAATT+AGG | + | chr1_4:22361326-22361345 | Msa0156360:intron | 15.0% |
| !!! | TGGATTTGAAATATTATTTA+TGG | + | chr1_4:22361683-22361702 | Msa0156360:CDS | 15.0% |
| !! | AAGAAATTAACATACTTTGA+TGG | - | chr1_4:22361514-22361533 | None:intergenic | 20.0% |
| !!! | ATTTTATGGGTTTGATTTTA+GGG | + | chr1_4:22361595-22361614 | Msa0156360:intron | 20.0% |
| !! | AAGAAATTAACATACTTTGA+TGG | - | chr1_4:22361514-22361533 | None:intergenic | 20.0% |
| !!! | ATTTTATGGGTTTGATTTTA+GGG | + | chr1_4:22361595-22361614 | Msa0156360:intron | 20.0% |
| !!! | GTTGATTTTGTGAATTTTGT+TGG | + | chr1_4:22361348-22361367 | Msa0156360:intron | 25.0% |
| !!! | GTATTTGGTTTTTGAGTATA+TGG | + | chr1_4:22361425-22361444 | Msa0156360:CDS | 25.0% |
| ! | CTGATCTTAAGAAATTCATT+CGG | + | chr1_4:22361451-22361470 | Msa0156360:CDS | 25.0% |
| !! | ATTAACATACTTTGATGGTT+GGG | - | chr1_4:22361509-22361528 | None:intergenic | 25.0% |
| !! | AATTAACATACTTTGATGGT+TGG | - | chr1_4:22361510-22361529 | None:intergenic | 25.0% |
| !!! | GATTTTATGGGTTTGATTTT+AGG | + | chr1_4:22361594-22361613 | Msa0156360:intron | 25.0% |
| !!! | AAATCCATTTTTTCAAACCA+TGG | - | chr1_4:22361670-22361689 | None:intergenic | 25.0% |
| !!! | TTCTGTTATTTCTGGAATTT+TGG | + | chr1_4:22361717-22361736 | Msa0156360:CDS | 25.0% |
| !!! | GTTGATTTTGTGAATTTTGT+TGG | + | chr1_4:22361348-22361367 | Msa0156360:intron | 25.0% |
| !!! | GTATTTGGTTTTTGAGTATA+TGG | + | chr1_4:22361425-22361444 | Msa0156360:CDS | 25.0% |
| ! | CTGATCTTAAGAAATTCATT+CGG | + | chr1_4:22361451-22361470 | Msa0156360:CDS | 25.0% |
| !! | ATTAACATACTTTGATGGTT+GGG | - | chr1_4:22361509-22361528 | None:intergenic | 25.0% |
| !! | AATTAACATACTTTGATGGT+TGG | - | chr1_4:22361510-22361529 | None:intergenic | 25.0% |
| !!! | GATTTTATGGGTTTGATTTT+AGG | + | chr1_4:22361594-22361613 | Msa0156360:intron | 25.0% |
| !!! | AAATCCATTTTTTCAAACCA+TGG | - | chr1_4:22361670-22361689 | None:intergenic | 25.0% |
| !!! | TTCTGTTATTTCTGGAATTT+TGG | + | chr1_4:22361717-22361736 | Msa0156360:CDS | 25.0% |
| TTAACTTACCTAACAACATG+TGG | - | chr1_4:22361278-22361297 | None:intergenic | 30.0% | |
| !! | TTGTGAATTTTGTTGGTGTT+AGG | + | chr1_4:22361355-22361374 | Msa0156360:intron | 30.0% |
| ! | TTAACATACTTTGATGGTTG+GGG | - | chr1_4:22361508-22361527 | None:intergenic | 30.0% |
| TTTGATGTATCAACTTTGCA+AGG | + | chr1_4:22361618-22361637 | Msa0156360:CDS | 30.0% | |
| TTGATGTATCAACTTTGCAA+GGG | + | chr1_4:22361619-22361638 | Msa0156360:CDS | 30.0% | |
| !! | AATGGTGATTCTGTTATTTC+TGG | + | chr1_4:22361709-22361728 | Msa0156360:CDS | 30.0% |
| ! | TTGTGTTGTTCTTGGTAAAA+TGG | + | chr1_4:22361761-22361780 | Msa0156360:CDS | 30.0% |
| TTAACTTACCTAACAACATG+TGG | - | chr1_4:22361278-22361297 | None:intergenic | 30.0% | |
| !! | TTGTGAATTTTGTTGGTGTT+AGG | + | chr1_4:22361355-22361374 | Msa0156360:intron | 30.0% |
| ! | TTAACATACTTTGATGGTTG+GGG | - | chr1_4:22361508-22361527 | None:intergenic | 30.0% |
| TTTGATGTATCAACTTTGCA+AGG | + | chr1_4:22361618-22361637 | Msa0156360:CDS | 30.0% | |
| TTGATGTATCAACTTTGCAA+GGG | + | chr1_4:22361619-22361638 | Msa0156360:CDS | 30.0% | |
| !! | AATGGTGATTCTGTTATTTC+TGG | + | chr1_4:22361709-22361728 | Msa0156360:CDS | 30.0% |
| ! | TTGTGTTGTTCTTGGTAAAA+TGG | + | chr1_4:22361761-22361780 | Msa0156360:CDS | 30.0% |
| AACAATCGCAGTAGTGTTAT+CGG | + | chr1_4:22361067-22361086 | Msa0156360:CDS | 35.0% | |
| !!! | TTTTGTTGGTGTTAGGTTGT+TGG | + | chr1_4:22361362-22361381 | Msa0156360:intron | 35.0% |
| TGTGAAACAAGGACAAAACA+AGG | + | chr1_4:22361386-22361405 | Msa0156360:CDS | 35.0% | |
| AAACAAGGACAAAACAAGGA+AGG | + | chr1_4:22361390-22361409 | Msa0156360:CDS | 35.0% | |
| AACAAGGACAAAACAAGGAA+GGG | + | chr1_4:22361391-22361410 | Msa0156360:CDS | 35.0% | |
| AGGGAAAACTGTGTTGTATT+TGG | + | chr1_4:22361410-22361429 | Msa0156360:CDS | 35.0% | |
| ! | TAACATACTTTGATGGTTGG+GGG | - | chr1_4:22361507-22361526 | None:intergenic | 35.0% |
| TCTGCCATGGTTTGAAAAAA+TGG | + | chr1_4:22361663-22361682 | Msa0156360:CDS | 35.0% | |
| TTGGTTCATAGTGTTCTTCA+AGG | + | chr1_4:22361736-22361755 | Msa0156360:CDS | 35.0% | |
| !! | TCAAGGTTTTGTGTTGTTCT+TGG | + | chr1_4:22361753-22361772 | Msa0156360:CDS | 35.0% |
| AACAATCGCAGTAGTGTTAT+CGG | + | chr1_4:22361067-22361086 | Msa0156360:CDS | 35.0% | |
| !!! | TTTTGTTGGTGTTAGGTTGT+TGG | + | chr1_4:22361362-22361381 | Msa0156360:intron | 35.0% |
| TGTGAAACAAGGACAAAACA+AGG | + | chr1_4:22361386-22361405 | Msa0156360:CDS | 35.0% | |
| AAACAAGGACAAAACAAGGA+AGG | + | chr1_4:22361390-22361409 | Msa0156360:CDS | 35.0% | |
| AACAAGGACAAAACAAGGAA+GGG | + | chr1_4:22361391-22361410 | Msa0156360:CDS | 35.0% | |
| AGGGAAAACTGTGTTGTATT+TGG | + | chr1_4:22361410-22361429 | Msa0156360:CDS | 35.0% | |
| ! | TAACATACTTTGATGGTTGG+GGG | - | chr1_4:22361507-22361526 | None:intergenic | 35.0% |
| TCTGCCATGGTTTGAAAAAA+TGG | + | chr1_4:22361663-22361682 | Msa0156360:CDS | 35.0% | |
| TTGGTTCATAGTGTTCTTCA+AGG | + | chr1_4:22361736-22361755 | Msa0156360:CDS | 35.0% | |
| !! | TCAAGGTTTTGTGTTGTTCT+TGG | + | chr1_4:22361753-22361772 | Msa0156360:CDS | 35.0% |
| CGTCTTCATGAAGATGATGA+AGG | + | chr1_4:22361197-22361216 | Msa0156360:CDS | 40.0% | |
| CTCATGATCCACATGTTGTT+AGG | + | chr1_4:22361267-22361286 | Msa0156360:CDS | 40.0% | |
| AGGTTGTTGGATGTGAAACA+AGG | + | chr1_4:22361375-22361394 | Msa0156360:intron | 40.0% | |
| ! | ATTCGGAGTTTTCGTCAAAC+TGG | + | chr1_4:22361468-22361487 | Msa0156360:CDS | 40.0% |
| ! | TTCGGAGTTTTCGTCAAACT+GGG | + | chr1_4:22361469-22361488 | Msa0156360:CDS | 40.0% |
| CGTCTTCATGAAGATGATGA+AGG | + | chr1_4:22361197-22361216 | Msa0156360:CDS | 40.0% | |
| CTCATGATCCACATGTTGTT+AGG | + | chr1_4:22361267-22361286 | Msa0156360:CDS | 40.0% | |
| AGGTTGTTGGATGTGAAACA+AGG | + | chr1_4:22361375-22361394 | Msa0156360:intron | 40.0% | |
| ! | ATTCGGAGTTTTCGTCAAAC+TGG | + | chr1_4:22361468-22361487 | Msa0156360:CDS | 40.0% |
| ! | TTCGGAGTTTTCGTCAAACT+GGG | + | chr1_4:22361469-22361488 | Msa0156360:CDS | 40.0% |
| ACTACTGCGATTGTTTCACC+GGG | - | chr1_4:22361062-22361081 | None:intergenic | 45.0% | |
| CACTACTGCGATTGTTTCAC+CGG | - | chr1_4:22361063-22361082 | None:intergenic | 45.0% | |
| TTCGAGAAGCTCGAGAAAGT+TGG | + | chr1_4:22361101-22361120 | Msa0156360:CDS | 45.0% | |
| AAAGTTGGAGGAGGAACGTA+CGG | + | chr1_4:22361116-22361135 | Msa0156360:CDS | 45.0% | |
| AGAGCAAGAGAGAAAGCTAC+TGG | + | chr1_4:22361149-22361168 | Msa0156360:CDS | 45.0% | |
| GAGCAAGAGAGAAAGCTACT+GGG | + | chr1_4:22361150-22361169 | Msa0156360:CDS | 45.0% | |
| !!! | TGCAAGGGTGTTGCTTTTTG+TGG | + | chr1_4:22361634-22361653 | Msa0156360:CDS | 45.0% |
| ! | TTTGTGGTTGCTTTCTGCCA+TGG | + | chr1_4:22361650-22361669 | Msa0156360:CDS | 45.0% |
| ACTACTGCGATTGTTTCACC+GGG | - | chr1_4:22361062-22361081 | None:intergenic | 45.0% | |
| CACTACTGCGATTGTTTCAC+CGG | - | chr1_4:22361063-22361082 | None:intergenic | 45.0% | |
| TTCGAGAAGCTCGAGAAAGT+TGG | + | chr1_4:22361101-22361120 | Msa0156360:CDS | 45.0% | |
| AAAGTTGGAGGAGGAACGTA+CGG | + | chr1_4:22361116-22361135 | Msa0156360:CDS | 45.0% | |
| AGAGCAAGAGAGAAAGCTAC+TGG | + | chr1_4:22361149-22361168 | Msa0156360:CDS | 45.0% | |
| GAGCAAGAGAGAAAGCTACT+GGG | + | chr1_4:22361150-22361169 | Msa0156360:CDS | 45.0% | |
| !!! | TGCAAGGGTGTTGCTTTTTG+TGG | + | chr1_4:22361634-22361653 | Msa0156360:CDS | 45.0% |
| ! | TTTGTGGTTGCTTTCTGCCA+TGG | + | chr1_4:22361650-22361669 | Msa0156360:CDS | 45.0% |
| !!! | TTAATTAATTAATGATTTTA+TGG | + | chr1_4:22361581-22361600 | Msa0156360:intron | 5.0% |
| !!! | TAATTAATTAATGATTTTAT+GGG | + | chr1_4:22361582-22361601 | Msa0156360:intron | 5.0% |
| !!! | TTAATTAATTAATGATTTTA+TGG | + | chr1_4:22361581-22361600 | Msa0156360:intron | 5.0% |
| !!! | TAATTAATTAATGATTTTAT+GGG | + | chr1_4:22361582-22361601 | Msa0156360:intron | 5.0% |
| GAGAAGCTCGAGAAAGTTGG+AGG | + | chr1_4:22361104-22361123 | Msa0156360:CDS | 50.0% | |
| AAGCTCGAGAAAGTTGGAGG+AGG | + | chr1_4:22361107-22361126 | Msa0156360:CDS | 50.0% | |
| AAGTTGGAGGAGGAACGTAC+GGG | + | chr1_4:22361117-22361136 | Msa0156360:CDS | 50.0% | |
| ! | CATACTTTGATGGTTGGGGG+TGG | - | chr1_4:22361504-22361523 | None:intergenic | 50.0% |
| GAGAAGCTCGAGAAAGTTGG+AGG | + | chr1_4:22361104-22361123 | Msa0156360:CDS | 50.0% | |
| AAGCTCGAGAAAGTTGGAGG+AGG | + | chr1_4:22361107-22361126 | Msa0156360:CDS | 50.0% | |
| AAGTTGGAGGAGGAACGTAC+GGG | + | chr1_4:22361117-22361136 | Msa0156360:CDS | 50.0% | |
| ! | CATACTTTGATGGTTGGGGG+TGG | - | chr1_4:22361504-22361523 | None:intergenic | 50.0% |
| CGCAGTAGTGTTATCGGCGA+AGG | + | chr1_4:22361073-22361092 | Msa0156360:CDS | 55.0% | |
| GAAACCTCGCGAAGCGTAGT+AGG | - | chr1_4:22361230-22361249 | None:intergenic | 55.0% | |
| CGCAGTAGTGTTATCGGCGA+AGG | + | chr1_4:22361073-22361092 | Msa0156360:CDS | 55.0% | |
| GAAACCTCGCGAAGCGTAGT+AGG | - | chr1_4:22361230-22361249 | None:intergenic | 55.0% | |
| TGGAGGAGGAACGTACGGGA+AGG | + | chr1_4:22361121-22361140 | Msa0156360:CDS | 60.0% | |
| TCCTCCTACTACGCTTCGCG+AGG | + | chr1_4:22361223-22361242 | Msa0156360:CDS | 60.0% | |
| ACCTCGCGAAGCGTAGTAGG+AGG | - | chr1_4:22361227-22361246 | None:intergenic | 60.0% | |
| TGGAGGAGGAACGTACGGGA+AGG | + | chr1_4:22361121-22361140 | Msa0156360:CDS | 60.0% | |
| TCCTCCTACTACGCTTCGCG+AGG | + | chr1_4:22361223-22361242 | Msa0156360:CDS | 60.0% | |
| ACCTCGCGAAGCGTAGTAGG+AGG | - | chr1_4:22361227-22361246 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 22361050 | 22361798 | 22361050 | ID=Msa0156360;Name=Msa0156360 |
| chr1_4 | mRNA | 22361050 | 22361798 | 22361050 | ID=Msa0156360-mRNA-1;Parent=Msa0156360;Name=Msa0156360-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|187 |
| chr1_4 | exon | 22361050 | 22361288 | 22361050 | ID=Msa0156360-mRNA-1:exon:7986;Parent=Msa0156360-mRNA-1 |
| chr1_4 | exon | 22361377 | 22361518 | 22361377 | ID=Msa0156360-mRNA-1:exon:7987;Parent=Msa0156360-mRNA-1 |
| chr1_4 | exon | 22361616 | 22361798 | 22361616 | ID=Msa0156360-mRNA-1:exon:7988;Parent=Msa0156360-mRNA-1 |
| chr1_4 | CDS | 22361050 | 22361288 | 22361050 | ID=Msa0156360-mRNA-1:cds;Parent=Msa0156360-mRNA-1 |
| chr1_4 | CDS | 22361377 | 22361518 | 22361377 | ID=Msa0156360-mRNA-1:cds;Parent=Msa0156360-mRNA-1 |
| chr1_4 | CDS | 22361616 | 22361798 | 22361616 | ID=Msa0156360-mRNA-1:cds;Parent=Msa0156360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
