Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156630 | sp|Q8VZ17|SUVH6_ARATH | 44.595 | 296 | 114 | 6 | 12 | 271 | 509 | 790 | 8.66e-73 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156630 | A0A396H1J2 | 91.698 | 265 | 18 | 1 | 11 | 271 | 275 | 539 | 3.69e-175 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0156630 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156630 | MtrunA17_Chr7g0232811 | 91.698 | 265 | 18 | 1 | 11 | 271 | 275 | 539 | 7.10e-179 | 503 |
| Msa0156630 | MtrunA17_Chr7g0232841 | 90.226 | 266 | 21 | 2 | 11 | 271 | 263 | 528 | 9.15e-174 | 490 |
| Msa0156630 | MtrunA17_Chr7g0232981 | 79.623 | 265 | 36 | 2 | 11 | 271 | 266 | 516 | 5.10e-142 | 409 |
| Msa0156630 | MtrunA17_Chr7g0232751 | 93.277 | 119 | 8 | 0 | 153 | 271 | 1 | 119 | 2.06e-78 | 233 |
| Msa0156630 | MtrunA17_Chr5g0399801 | 46.667 | 300 | 113 | 5 | 5 | 271 | 804 | 1089 | 1.01e-77 | 254 |
| Msa0156630 | MtrunA17_Chr4g0003511 | 46.599 | 294 | 110 | 5 | 11 | 271 | 773 | 1052 | 2.67e-77 | 253 |
| Msa0156630 | MtrunA17_Chr4g0003501 | 46.599 | 294 | 108 | 5 | 11 | 271 | 678 | 955 | 2.17e-74 | 244 |
| Msa0156630 | MtrunA17_Chr7g0232871 | 92.727 | 110 | 8 | 0 | 62 | 171 | 1 | 110 | 3.64e-69 | 209 |
| Msa0156630 | MtrunA17_Chr7g0252211 | 34.219 | 301 | 147 | 8 | 12 | 271 | 467 | 757 | 1.13e-43 | 157 |
| Msa0156630 | MtrunA17_Chr1g0170651 | 32.362 | 309 | 125 | 6 | 1 | 271 | 284 | 546 | 1.41e-43 | 155 |
| Msa0156630 | MtrunA17_Chr6g0476111 | 34.983 | 303 | 144 | 9 | 11 | 271 | 403 | 694 | 1.07e-42 | 154 |
| Msa0156630 | MtrunA17_Chr6g0476121 | 34.983 | 303 | 144 | 9 | 11 | 271 | 352 | 643 | 1.92e-41 | 150 |
| Msa0156630 | MtrunA17_Chr3g0080761 | 31.667 | 300 | 144 | 9 | 12 | 266 | 376 | 659 | 1.05e-37 | 140 |
| Msa0156630 | MtrunA17_Chr8g0369301 | 30.741 | 270 | 135 | 6 | 7 | 240 | 482 | 735 | 1.56e-35 | 134 |
| Msa0156630 | MtrunA17_Chr8g0354821 | 30.769 | 299 | 145 | 11 | 12 | 266 | 403 | 683 | 5.28e-35 | 132 |
| Msa0156630 | MtrunA17_Chr8g0368901 | 29.889 | 271 | 136 | 7 | 8 | 241 | 503 | 756 | 1.46e-34 | 131 |
| Msa0156630 | MtrunA17_Chr7g0255181 | 32.653 | 294 | 130 | 11 | 12 | 266 | 436 | 700 | 2.24e-34 | 131 |
| Msa0156630 | MtrunA17_Chr8g0368911 | 29.588 | 267 | 140 | 7 | 8 | 240 | 496 | 748 | 2.24e-33 | 128 |
| Msa0156630 | MtrunA17_Chr4g0075321 | 36.500 | 200 | 87 | 5 | 76 | 271 | 901 | 1064 | 1.62e-31 | 123 |
| Msa0156630 | MtrunA17_Chr1g0163051 | 28.782 | 271 | 143 | 7 | 12 | 247 | 396 | 651 | 1.10e-30 | 120 |
| Msa0156630 | MtrunA17_Chr5g0403241 | 35.354 | 198 | 92 | 5 | 76 | 271 | 1344 | 1507 | 1.15e-30 | 120 |
| Msa0156630 | MtrunA17_Chr3g0094881 | 27.037 | 270 | 139 | 7 | 12 | 240 | 369 | 621 | 8.33e-29 | 115 |
| Msa0156630 | MtrunA17_Chr6g0467421 | 27.138 | 269 | 140 | 8 | 12 | 240 | 310 | 562 | 1.37e-28 | 114 |
| Msa0156630 | MtrunA17_Chr6g0467381 | 27.138 | 269 | 140 | 8 | 12 | 240 | 310 | 562 | 1.38e-28 | 114 |
| Msa0156630 | MtrunA17_Chr6g0467531 | 27.509 | 269 | 139 | 8 | 12 | 240 | 310 | 562 | 2.08e-28 | 113 |
| Msa0156630 | MtrunA17_Chr8g0373821 | 35.071 | 211 | 95 | 7 | 61 | 266 | 360 | 533 | 2.47e-28 | 113 |
| Msa0156630 | MtrunA17_Chr6g0467401 | 26.766 | 269 | 141 | 8 | 12 | 240 | 310 | 562 | 4.70e-27 | 109 |
| Msa0156630 | MtrunA17_Chr6g0467411 | 27.509 | 269 | 139 | 9 | 12 | 240 | 228 | 480 | 7.74e-27 | 108 |
| Msa0156630 | MtrunA17_Chr1g0163041 | 28.309 | 272 | 145 | 7 | 12 | 248 | 315 | 571 | 8.56e-25 | 103 |
| Msa0156630 | MtrunA17_Chr2g0306961 | 29.586 | 169 | 100 | 4 | 76 | 241 | 310 | 462 | 7.17e-23 | 97.4 |
| Msa0156630 | MtrunA17_Chr1g0190311 | 32.536 | 209 | 108 | 8 | 63 | 269 | 465 | 642 | 8.18e-20 | 89.0 |
| Msa0156630 | MtrunA17_Chr1g0183321 | 30.476 | 210 | 104 | 7 | 63 | 266 | 568 | 741 | 5.94e-18 | 83.6 |
| Msa0156630 | MtrunA17_Chr7g0262001 | 28.934 | 197 | 101 | 7 | 76 | 266 | 534 | 697 | 8.57e-13 | 68.2 |
| Msa0156630 | MtrunA17_Chr6g0460921 | 25.116 | 215 | 123 | 9 | 53 | 266 | 238 | 415 | 8.60e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156630 | AT2G22740.2 | 44.595 | 296 | 114 | 6 | 12 | 271 | 509 | 790 | 8.80e-74 | 240 |
| Msa0156630 | AT2G22740.1 | 44.595 | 296 | 114 | 6 | 12 | 271 | 509 | 790 | 8.80e-74 | 240 |
| Msa0156630 | AT2G35160.5 | 43.836 | 292 | 92 | 5 | 12 | 271 | 507 | 758 | 1.92e-73 | 239 |
| Msa0156630 | AT2G35160.2 | 43.836 | 292 | 92 | 5 | 12 | 271 | 543 | 794 | 2.35e-73 | 239 |
| Msa0156630 | AT2G35160.3 | 43.836 | 292 | 92 | 5 | 12 | 271 | 543 | 794 | 2.35e-73 | 239 |
| Msa0156630 | AT2G35160.1 | 43.836 | 292 | 92 | 5 | 12 | 271 | 543 | 794 | 2.35e-73 | 239 |
| Msa0156630 | AT2G35160.4 | 43.836 | 292 | 92 | 5 | 12 | 271 | 543 | 794 | 2.35e-73 | 239 |
| Msa0156630 | AT5G13960.2 | 34.333 | 300 | 149 | 8 | 11 | 271 | 200 | 490 | 2.15e-43 | 154 |
| Msa0156630 | AT5G13960.1 | 34.333 | 300 | 149 | 8 | 11 | 271 | 334 | 624 | 5.45e-43 | 155 |
| Msa0156630 | AT5G04940.2 | 30.195 | 308 | 152 | 11 | 2 | 266 | 378 | 665 | 4.69e-33 | 127 |
| Msa0156630 | AT5G04940.1 | 30.195 | 308 | 152 | 11 | 2 | 266 | 378 | 665 | 4.69e-33 | 127 |
| Msa0156630 | AT1G73100.1 | 29.592 | 294 | 153 | 9 | 12 | 266 | 386 | 664 | 5.14e-32 | 124 |
| Msa0156630 | AT4G13460.1 | 29.811 | 265 | 138 | 5 | 12 | 241 | 386 | 637 | 5.04e-31 | 121 |
| Msa0156630 | AT4G13460.2 | 29.811 | 265 | 138 | 5 | 12 | 241 | 386 | 637 | 5.04e-31 | 121 |
| Msa0156630 | AT2G33290.1 | 27.143 | 280 | 147 | 8 | 12 | 254 | 388 | 647 | 2.12e-27 | 111 |
| Msa0156630 | AT2G33290.3 | 27.143 | 280 | 147 | 8 | 12 | 254 | 388 | 647 | 2.12e-27 | 111 |
| Msa0156630 | AT2G33290.4 | 27.143 | 280 | 147 | 8 | 12 | 254 | 388 | 647 | 2.12e-27 | 111 |
| Msa0156630 | AT2G33290.2 | 27.143 | 280 | 147 | 8 | 12 | 254 | 388 | 647 | 2.12e-27 | 111 |
| Msa0156630 | AT2G23740.3 | 31.937 | 191 | 101 | 4 | 76 | 266 | 1216 | 1377 | 3.02e-24 | 102 |
| Msa0156630 | AT2G23740.6 | 31.937 | 191 | 101 | 4 | 76 | 266 | 1216 | 1377 | 3.02e-24 | 102 |
| Msa0156630 | AT2G23740.2 | 31.937 | 191 | 101 | 4 | 76 | 266 | 1216 | 1377 | 3.02e-24 | 102 |
| Msa0156630 | AT2G23740.1 | 31.937 | 191 | 101 | 4 | 76 | 266 | 1209 | 1370 | 3.04e-24 | 102 |
| Msa0156630 | AT2G24740.1 | 27.667 | 300 | 164 | 10 | 1 | 266 | 470 | 750 | 2.95e-23 | 99.4 |
| Msa0156630 | AT1G17770.1 | 31.081 | 222 | 117 | 7 | 58 | 266 | 490 | 688 | 6.70e-23 | 98.2 |
| Msa0156630 | AT3G04380.6 | 32.536 | 209 | 107 | 8 | 63 | 269 | 257 | 433 | 2.37e-20 | 90.5 |
| Msa0156630 | AT3G04380.2 | 32.536 | 209 | 107 | 8 | 63 | 269 | 257 | 433 | 2.58e-20 | 90.5 |
| Msa0156630 | AT3G04380.5 | 32.536 | 209 | 107 | 8 | 63 | 269 | 241 | 417 | 2.73e-20 | 90.1 |
| Msa0156630 | AT3G04380.4 | 32.536 | 209 | 107 | 8 | 63 | 269 | 284 | 460 | 3.21e-20 | 90.1 |
| Msa0156630 | AT3G04380.1 | 32.536 | 209 | 107 | 8 | 63 | 269 | 284 | 460 | 3.53e-20 | 90.1 |
| Msa0156630 | AT3G04380.3 | 32.536 | 209 | 107 | 8 | 63 | 269 | 268 | 444 | 3.91e-20 | 89.7 |
| Msa0156630 | AT3G03750.2 | 28.796 | 191 | 108 | 5 | 76 | 266 | 183 | 345 | 1.68e-15 | 75.9 |
| Msa0156630 | AT1G04050.3 | 28.230 | 209 | 113 | 7 | 63 | 269 | 444 | 617 | 2.30e-15 | 76.3 |
| Msa0156630 | AT1G04050.2 | 28.230 | 209 | 113 | 7 | 63 | 269 | 548 | 721 | 2.70e-15 | 75.9 |
| Msa0156630 | AT1G04050.1 | 28.230 | 209 | 113 | 7 | 63 | 269 | 548 | 721 | 2.70e-15 | 75.9 |
| Msa0156630 | AT2G23740.4 | 32.258 | 124 | 59 | 3 | 76 | 199 | 1216 | 1314 | 3.90e-13 | 69.7 |
| Msa0156630 | AT2G23740.5 | 32.258 | 124 | 59 | 3 | 76 | 199 | 1216 | 1314 | 3.90e-13 | 69.7 |
| Msa0156630 | AT1G76710.3 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 6.95e-13 | 68.6 |
| Msa0156630 | AT1G76710.4 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 7.34e-13 | 68.6 |
| Msa0156630 | AT1G76710.2 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 7.54e-13 | 68.6 |
| Msa0156630 | AT1G76710.1 | 31.892 | 185 | 75 | 9 | 85 | 267 | 90 | 225 | 7.54e-13 | 68.6 |
Find 46 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAAATATCTTTAT+AGG | 0.206306 | 1_4:-23210790 | None:intergenic |
| TTTACCACTTGAAGCTTCTA+AGG | 0.221245 | 1_4:-23211255 | None:intergenic |
| GATGAGTATTTATTTAATAT+TGG | 0.247972 | 1_4:+23211152 | Msa0156630:CDS |
| AACATTTCGAGCAAACAAAT+TGG | 0.261209 | 1_4:-23211372 | None:intergenic |
| CGAGTAATGTATTGAAAATA+TGG | 0.296319 | 1_4:-23210864 | None:intergenic |
| TCCTATAAAGATATTTCTAA+TGG | 0.302242 | 1_4:+23210789 | Msa0156630:CDS |
| ACAATTGATGCTGCTAAGTA+TGG | 0.305938 | 1_4:+23211314 | Msa0156630:CDS |
| TCAGAGAATGCAATTCCTTC+TGG | 0.338329 | 1_4:+23211062 | Msa0156630:CDS |
| GAATCTTCGAAAAGCCATTC+AGG | 0.347836 | 1_4:-23210897 | None:intergenic |
| CTCGTAACATTTATCCTGAA+TGG | 0.372209 | 1_4:+23210883 | Msa0156630:CDS |
| AGGTGAGATTATTGAAGATC+AGG | 0.383100 | 1_4:+23211106 | Msa0156630:CDS |
| TTCATATATGGTTGATAGTA+AGG | 0.403159 | 1_4:+23211214 | Msa0156630:CDS |
| ATGGGAAGAGGATTCATATA+TGG | 0.412825 | 1_4:+23211202 | Msa0156630:CDS |
| GTGGTTAATCGTATAGATTC+TGG | 0.413281 | 1_4:+23210834 | Msa0156630:CDS |
| ACAAATTGGGAGAACAACTA+TGG | 0.427505 | 1_4:-23211358 | None:intergenic |
| ACATTTCGAGCAAACAAATT+GGG | 0.449844 | 1_4:-23211371 | None:intergenic |
| ATACGATTAACCACACATAT+AGG | 0.451047 | 1_4:-23210825 | None:intergenic |
| TTCACAAGGTCTATAGTTCA+TGG | 0.458760 | 1_4:+23211183 | Msa0156630:CDS |
| CCCTCCACTCTTAAGAGCAC+AGG | 0.461039 | 1_4:-23210958 | None:intergenic |
| GATCAAGTGATTGATTCAAA+TGG | 0.480841 | 1_4:+23211497 | Msa0156630:CDS |
| CAAGACTAAGGCGAAAGGAT+GGG | 0.513493 | 1_4:+23211031 | Msa0156630:CDS |
| GGTCTATAGTTCATGGGAAG+AGG | 0.525490 | 1_4:+23211190 | Msa0156630:CDS |
| TCAAGACTAAGGCGAAAGGA+TGG | 0.530216 | 1_4:+23211030 | Msa0156630:CDS |
| GCCTGTGCTCTTAAGAGTGG+AGG | 0.530694 | 1_4:+23210957 | Msa0156630:CDS |
| AGAAGCTTCAAGTGGTAAAG+AGG | 0.540440 | 1_4:+23211259 | Msa0156630:CDS |
| AAGACTAAGGCGAAAGGATG+GGG | 0.542189 | 1_4:+23211032 | Msa0156630:CDS |
| TTACCACTTGAAGCTTCTAA+GGG | 0.542917 | 1_4:-23211254 | None:intergenic |
| CTAAGTATGGTAACGTGGCA+AGG | 0.558339 | 1_4:+23211327 | Msa0156630:CDS |
| ATTGATGATCGATGTGATAG+TGG | 0.558469 | 1_4:+23211284 | Msa0156630:CDS |
| ACTATCACATCGATCATCAA+TGG | 0.565161 | 1_4:-23211282 | None:intergenic |
| TTTGCCTGTGCTCTTAAGAG+TGG | 0.575325 | 1_4:+23210954 | Msa0156630:CDS |
| AAGACGAAAGCATGTTATTG+CGG | 0.583822 | 1_4:+23211527 | Msa0156630:CDS |
| CCTGTGCTCTTAAGAGTGGA+GGG | 0.588175 | 1_4:+23210958 | Msa0156630:CDS |
| TCACAAGGTCTATAGTTCAT+GGG | 0.590256 | 1_4:+23211184 | Msa0156630:CDS |
| AAAGTCAGCTCATTCATGCT+CGG | 0.596521 | 1_4:-23211455 | None:intergenic |
| TTTACAATGATGATGATCTG+AGG | 0.599652 | 1_4:+23211396 | Msa0156630:CDS |
| ATGATCGATGTGATAGTGGT+AGG | 0.614728 | 1_4:+23211288 | Msa0156630:CDS |
| TATTGGCAATTATATTCACA+AGG | 0.615507 | 1_4:+23211169 | Msa0156630:CDS |
| AATCTCATCAATACAGTCGA+CGG | 0.622465 | 1_4:-23211565 | None:intergenic |
| TAATCGTATAGATTCTGGCA+AGG | 0.632162 | 1_4:+23210839 | Msa0156630:CDS |
| TCACAAATAAAACTTCCAGA+AGG | 0.644047 | 1_4:-23211077 | None:intergenic |
| CAACCCTTAGAAGCTTCAAG+TGG | 0.647600 | 1_4:+23211251 | Msa0156630:CDS |
| AGAACATTTACGCCCAACAG+AGG | 0.655904 | 1_4:-23210919 | None:intergenic |
| AGAAGCTGTTCCTATATGTG+TGG | 0.665038 | 1_4:+23210815 | Msa0156630:CDS |
| GCTGCATATAGCATGATGTG+TGG | 0.717627 | 1_4:-23211422 | None:intergenic |
| TGCTGCTAAGTATGGTAACG+TGG | 0.728265 | 1_4:+23211322 | Msa0156630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATGAGTATTTATTTAATAT+TGG | + | chr1_4:23211152-23211171 | Msa0156630:CDS | 15.0% |
| !! | GATGAGTATTTATTTAATAT+TGG | + | chr1_4:23211152-23211171 | Msa0156630:CDS | 15.0% |
| !!! | TCCTATAAAGATATTTCTAA+TGG | + | chr1_4:23210789-23210808 | Msa0156630:CDS | 20.0% |
| !! | TCCATTAGAAATATCTTTAT+AGG | - | chr1_4:23210793-23210812 | None:intergenic | 20.0% |
| !!! | AGTTTTATTTGTGAGTATTT+AGG | + | chr1_4:23211086-23211105 | Msa0156630:CDS | 20.0% |
| !!! | TCCTATAAAGATATTTCTAA+TGG | + | chr1_4:23210789-23210808 | Msa0156630:CDS | 20.0% |
| !! | TCCATTAGAAATATCTTTAT+AGG | - | chr1_4:23210793-23210812 | None:intergenic | 20.0% |
| !!! | AGTTTTATTTGTGAGTATTT+AGG | + | chr1_4:23211086-23211105 | Msa0156630:CDS | 20.0% |
| ! | CGAGTAATGTATTGAAAATA+TGG | - | chr1_4:23210867-23210886 | None:intergenic | 25.0% |
| !!! | ATCTCATTTTTCTTTACTCT+AGG | - | chr1_4:23210990-23211009 | None:intergenic | 25.0% |
| ! | TATTGGCAATTATATTCACA+AGG | + | chr1_4:23211169-23211188 | Msa0156630:CDS | 25.0% |
| !!! | TTCATATATGGTTGATAGTA+AGG | + | chr1_4:23211214-23211233 | Msa0156630:CDS | 25.0% |
| ! | CGAGTAATGTATTGAAAATA+TGG | - | chr1_4:23210867-23210886 | None:intergenic | 25.0% |
| !!! | ATCTCATTTTTCTTTACTCT+AGG | - | chr1_4:23210990-23211009 | None:intergenic | 25.0% |
| ! | TATTGGCAATTATATTCACA+AGG | + | chr1_4:23211169-23211188 | Msa0156630:CDS | 25.0% |
| !!! | TTCATATATGGTTGATAGTA+AGG | + | chr1_4:23211214-23211233 | Msa0156630:CDS | 25.0% |
| ATACGATTAACCACACATAT+AGG | - | chr1_4:23210828-23210847 | None:intergenic | 30.0% | |
| !! | GCTTCAAATTTTCAAGACTA+AGG | + | chr1_4:23211019-23211038 | Msa0156630:CDS | 30.0% |
| TCACAAATAAAACTTCCAGA+AGG | - | chr1_4:23211080-23211099 | None:intergenic | 30.0% | |
| ACATTTCGAGCAAACAAATT+GGG | - | chr1_4:23211374-23211393 | None:intergenic | 30.0% | |
| AACATTTCGAGCAAACAAAT+TGG | - | chr1_4:23211375-23211394 | None:intergenic | 30.0% | |
| ! | TTTACAATGATGATGATCTG+AGG | + | chr1_4:23211396-23211415 | Msa0156630:CDS | 30.0% |
| ! | GATCAAGTGATTGATTCAAA+TGG | + | chr1_4:23211497-23211516 | Msa0156630:CDS | 30.0% |
| ATACGATTAACCACACATAT+AGG | - | chr1_4:23210828-23210847 | None:intergenic | 30.0% | |
| !! | GCTTCAAATTTTCAAGACTA+AGG | + | chr1_4:23211019-23211038 | Msa0156630:CDS | 30.0% |
| TCACAAATAAAACTTCCAGA+AGG | - | chr1_4:23211080-23211099 | None:intergenic | 30.0% | |
| ACATTTCGAGCAAACAAATT+GGG | - | chr1_4:23211374-23211393 | None:intergenic | 30.0% | |
| AACATTTCGAGCAAACAAAT+TGG | - | chr1_4:23211375-23211394 | None:intergenic | 30.0% | |
| ! | TTTACAATGATGATGATCTG+AGG | + | chr1_4:23211396-23211415 | Msa0156630:CDS | 30.0% |
| ! | GATCAAGTGATTGATTCAAA+TGG | + | chr1_4:23211497-23211516 | Msa0156630:CDS | 30.0% |
| GTGGTTAATCGTATAGATTC+TGG | + | chr1_4:23210834-23210853 | Msa0156630:CDS | 35.0% | |
| TAATCGTATAGATTCTGGCA+AGG | + | chr1_4:23210839-23210858 | Msa0156630:CDS | 35.0% | |
| CTCGTAACATTTATCCTGAA+TGG | + | chr1_4:23210883-23210902 | Msa0156630:CDS | 35.0% | |
| ! | TTTTCGAAGATTCCTCTGTT+GGG | + | chr1_4:23210907-23210926 | Msa0156630:CDS | 35.0% |
| !! | ATTTTCAAGACTAAGGCGAA+AGG | + | chr1_4:23211026-23211045 | Msa0156630:CDS | 35.0% |
| AGGTGAGATTATTGAAGATC+AGG | + | chr1_4:23211106-23211125 | Msa0156630:CDS | 35.0% | |
| TTCACAAGGTCTATAGTTCA+TGG | + | chr1_4:23211183-23211202 | Msa0156630:CDS | 35.0% | |
| TCACAAGGTCTATAGTTCAT+GGG | + | chr1_4:23211184-23211203 | Msa0156630:CDS | 35.0% | |
| ATGGGAAGAGGATTCATATA+TGG | + | chr1_4:23211202-23211221 | Msa0156630:CDS | 35.0% | |
| TTACCACTTGAAGCTTCTAA+GGG | - | chr1_4:23211257-23211276 | None:intergenic | 35.0% | |
| TTTACCACTTGAAGCTTCTA+AGG | - | chr1_4:23211258-23211277 | None:intergenic | 35.0% | |
| ACTATCACATCGATCATCAA+TGG | - | chr1_4:23211285-23211304 | None:intergenic | 35.0% | |
| ! | ATTGATGATCGATGTGATAG+TGG | + | chr1_4:23211284-23211303 | Msa0156630:CDS | 35.0% |
| ACAATTGATGCTGCTAAGTA+TGG | + | chr1_4:23211314-23211333 | Msa0156630:CDS | 35.0% | |
| ACAAATTGGGAGAACAACTA+TGG | - | chr1_4:23211361-23211380 | None:intergenic | 35.0% | |
| ! | AAGACGAAAGCATGTTATTG+CGG | + | chr1_4:23211527-23211546 | Msa0156630:CDS | 35.0% |
| GTGGTTAATCGTATAGATTC+TGG | + | chr1_4:23210834-23210853 | Msa0156630:CDS | 35.0% | |
| TAATCGTATAGATTCTGGCA+AGG | + | chr1_4:23210839-23210858 | Msa0156630:CDS | 35.0% | |
| CTCGTAACATTTATCCTGAA+TGG | + | chr1_4:23210883-23210902 | Msa0156630:CDS | 35.0% | |
| ! | TTTTCGAAGATTCCTCTGTT+GGG | + | chr1_4:23210907-23210926 | Msa0156630:CDS | 35.0% |
| !! | ATTTTCAAGACTAAGGCGAA+AGG | + | chr1_4:23211026-23211045 | Msa0156630:CDS | 35.0% |
| AGGTGAGATTATTGAAGATC+AGG | + | chr1_4:23211106-23211125 | Msa0156630:CDS | 35.0% | |
| TTCACAAGGTCTATAGTTCA+TGG | + | chr1_4:23211183-23211202 | Msa0156630:CDS | 35.0% | |
| TCACAAGGTCTATAGTTCAT+GGG | + | chr1_4:23211184-23211203 | Msa0156630:CDS | 35.0% | |
| ATGGGAAGAGGATTCATATA+TGG | + | chr1_4:23211202-23211221 | Msa0156630:CDS | 35.0% | |
| TTACCACTTGAAGCTTCTAA+GGG | - | chr1_4:23211257-23211276 | None:intergenic | 35.0% | |
| TTTACCACTTGAAGCTTCTA+AGG | - | chr1_4:23211258-23211277 | None:intergenic | 35.0% | |
| ACTATCACATCGATCATCAA+TGG | - | chr1_4:23211285-23211304 | None:intergenic | 35.0% | |
| ! | ATTGATGATCGATGTGATAG+TGG | + | chr1_4:23211284-23211303 | Msa0156630:CDS | 35.0% |
| ACAATTGATGCTGCTAAGTA+TGG | + | chr1_4:23211314-23211333 | Msa0156630:CDS | 35.0% | |
| ACAAATTGGGAGAACAACTA+TGG | - | chr1_4:23211361-23211380 | None:intergenic | 35.0% | |
| ! | AAGACGAAAGCATGTTATTG+CGG | + | chr1_4:23211527-23211546 | Msa0156630:CDS | 35.0% |
| AGAAGCTGTTCCTATATGTG+TGG | + | chr1_4:23210815-23210834 | Msa0156630:CDS | 40.0% | |
| GAATCTTCGAAAAGCCATTC+AGG | - | chr1_4:23210900-23210919 | None:intergenic | 40.0% | |
| ! | CTTTTCGAAGATTCCTCTGT+TGG | + | chr1_4:23210906-23210925 | Msa0156630:CDS | 40.0% |
| TCAGAGAATGCAATTCCTTC+TGG | + | chr1_4:23211062-23211081 | Msa0156630:CDS | 40.0% | |
| AGAAGCTTCAAGTGGTAAAG+AGG | + | chr1_4:23211259-23211278 | Msa0156630:CDS | 40.0% | |
| !! | ATGATCGATGTGATAGTGGT+AGG | + | chr1_4:23211288-23211307 | Msa0156630:CDS | 40.0% |
| AAAGTCAGCTCATTCATGCT+CGG | - | chr1_4:23211458-23211477 | None:intergenic | 40.0% | |
| AGAAGCTGTTCCTATATGTG+TGG | + | chr1_4:23210815-23210834 | Msa0156630:CDS | 40.0% | |
| GAATCTTCGAAAAGCCATTC+AGG | - | chr1_4:23210900-23210919 | None:intergenic | 40.0% | |
| ! | CTTTTCGAAGATTCCTCTGT+TGG | + | chr1_4:23210906-23210925 | Msa0156630:CDS | 40.0% |
| TCAGAGAATGCAATTCCTTC+TGG | + | chr1_4:23211062-23211081 | Msa0156630:CDS | 40.0% | |
| AGAAGCTTCAAGTGGTAAAG+AGG | + | chr1_4:23211259-23211278 | Msa0156630:CDS | 40.0% | |
| !! | ATGATCGATGTGATAGTGGT+AGG | + | chr1_4:23211288-23211307 | Msa0156630:CDS | 40.0% |
| AAAGTCAGCTCATTCATGCT+CGG | - | chr1_4:23211458-23211477 | None:intergenic | 40.0% | |
| AGAACATTTACGCCCAACAG+AGG | - | chr1_4:23210922-23210941 | None:intergenic | 45.0% | |
| TTTGCCTGTGCTCTTAAGAG+TGG | + | chr1_4:23210954-23210973 | Msa0156630:CDS | 45.0% | |
| TCAAGACTAAGGCGAAAGGA+TGG | + | chr1_4:23211030-23211049 | Msa0156630:CDS | 45.0% | |
| CAAGACTAAGGCGAAAGGAT+GGG | + | chr1_4:23211031-23211050 | Msa0156630:CDS | 45.0% | |
| AAGACTAAGGCGAAAGGATG+GGG | + | chr1_4:23211032-23211051 | Msa0156630:CDS | 45.0% | |
| GGTCTATAGTTCATGGGAAG+AGG | + | chr1_4:23211190-23211209 | Msa0156630:CDS | 45.0% | |
| CAACCCTTAGAAGCTTCAAG+TGG | + | chr1_4:23211251-23211270 | Msa0156630:CDS | 45.0% | |
| ! | TGCTGCTAAGTATGGTAACG+TGG | + | chr1_4:23211322-23211341 | Msa0156630:CDS | 45.0% |
| ! | CTAAGTATGGTAACGTGGCA+AGG | + | chr1_4:23211327-23211346 | Msa0156630:CDS | 45.0% |
| GCTGCATATAGCATGATGTG+TGG | - | chr1_4:23211425-23211444 | None:intergenic | 45.0% | |
| AGAACATTTACGCCCAACAG+AGG | - | chr1_4:23210922-23210941 | None:intergenic | 45.0% | |
| TTTGCCTGTGCTCTTAAGAG+TGG | + | chr1_4:23210954-23210973 | Msa0156630:CDS | 45.0% | |
| TCAAGACTAAGGCGAAAGGA+TGG | + | chr1_4:23211030-23211049 | Msa0156630:CDS | 45.0% | |
| CAAGACTAAGGCGAAAGGAT+GGG | + | chr1_4:23211031-23211050 | Msa0156630:CDS | 45.0% | |
| AAGACTAAGGCGAAAGGATG+GGG | + | chr1_4:23211032-23211051 | Msa0156630:CDS | 45.0% | |
| GGTCTATAGTTCATGGGAAG+AGG | + | chr1_4:23211190-23211209 | Msa0156630:CDS | 45.0% | |
| CAACCCTTAGAAGCTTCAAG+TGG | + | chr1_4:23211251-23211270 | Msa0156630:CDS | 45.0% | |
| ! | TGCTGCTAAGTATGGTAACG+TGG | + | chr1_4:23211322-23211341 | Msa0156630:CDS | 45.0% |
| ! | CTAAGTATGGTAACGTGGCA+AGG | + | chr1_4:23211327-23211346 | Msa0156630:CDS | 45.0% |
| GCTGCATATAGCATGATGTG+TGG | - | chr1_4:23211425-23211444 | None:intergenic | 45.0% | |
| CCTGTGCTCTTAAGAGTGGA+GGG | + | chr1_4:23210958-23210977 | Msa0156630:CDS | 50.0% | |
| CCTGTGCTCTTAAGAGTGGA+GGG | + | chr1_4:23210958-23210977 | Msa0156630:CDS | 50.0% | |
| GCCTGTGCTCTTAAGAGTGG+AGG | + | chr1_4:23210957-23210976 | Msa0156630:CDS | 55.0% | |
| ! | CCCTCCACTCTTAAGAGCAC+AGG | - | chr1_4:23210961-23210980 | None:intergenic | 55.0% |
| GCCTGTGCTCTTAAGAGTGG+AGG | + | chr1_4:23210957-23210976 | Msa0156630:CDS | 55.0% | |
| ! | CCCTCCACTCTTAAGAGCAC+AGG | - | chr1_4:23210961-23210980 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 23210765 | 23211580 | 23210765 | ID=Msa0156630;Name=Msa0156630 |
| chr1_4 | mRNA | 23210765 | 23211580 | 23210765 | ID=Msa0156630-mRNA-1;Parent=Msa0156630;Name=Msa0156630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|271 |
| chr1_4 | exon | 23210765 | 23211580 | 23210765 | ID=Msa0156630-mRNA-1:exon:8141;Parent=Msa0156630-mRNA-1 |
| chr1_4 | CDS | 23210765 | 23211580 | 23210765 | ID=Msa0156630-mRNA-1:cds;Parent=Msa0156630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
