Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156810 | G7I6L4 | 85.156 | 128 | 19 | 0 | 1 | 128 | 1 | 128 | 2.25e-67 | 212 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0156810 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156810 | MtrunA17_Chr7g0235271 | 76.471 | 34 | 8 | 0 | 163 | 196 | 1 | 34 | 5.12e-11 | 57.4 |
| Msa0156810 | MtrunA17_Chr8g0362161 | 76.471 | 34 | 8 | 0 | 163 | 196 | 1 | 34 | 6.11e-11 | 57.0 |
| Msa0156810 | MtrunA17_Chr5g0399781 | 52.830 | 53 | 24 | 1 | 3 | 55 | 12 | 63 | 6.78e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAAGCTTCAAAGTCTA+TGG | 0.184389 | 1_4:+23514118 | Msa0156810:CDS |
| GAGCTTTCAAACCAATTTCC+AGG | 0.378813 | 1_4:+23513801 | Msa0156810:CDS |
| TGGAAATTGGTTTGAAAGCT+CGG | 0.417197 | 1_4:-23513799 | None:intergenic |
| ATAACAACAAGGAAAACAAC+TGG | 0.420492 | 1_4:+23515585 | Msa0156810:CDS |
| AATTTCTTCAATCCTCCAAT+TGG | 0.427094 | 1_4:-23515615 | None:intergenic |
| CCACAAGCATTACATAGTAT+TGG | 0.433061 | 1_4:-23513672 | None:intergenic |
| CATCCATGAAGCTGACTTGT+CGG | 0.439456 | 1_4:-23515653 | None:intergenic |
| GATCCGACAAGTCAGCTTCA+TGG | 0.456202 | 1_4:+23515650 | Msa0156810:CDS |
| GAAACTAAACTTTGGCGTAA+AGG | 0.456777 | 1_4:+23513636 | Msa0156810:CDS |
| TGCTTGTGGACTACATTTCA+AGG | 0.461822 | 1_4:+23513686 | Msa0156810:CDS |
| ATCAGACCTTGACGTTGAAA+AGG | 0.465983 | 1_4:+23513761 | Msa0156810:CDS |
| ACAAGAATGCTTTCAGAAGA+AGG | 0.473328 | 1_4:+23515697 | Msa0156810:CDS |
| GGACTACATTTCAAGGCTAA+AGG | 0.474721 | 1_4:+23513693 | Msa0156810:CDS |
| TCTTCGGAAGATAGTTATCA+AGG | 0.478433 | 1_4:-23513719 | None:intergenic |
| TGTATACCAAGCAATGAGAT+AGG | 0.478624 | 1_4:+23514207 | Msa0156810:CDS |
| GGAAATTGGTTTGAAAGCTC+GGG | 0.487200 | 1_4:-23513798 | None:intergenic |
| ATCGATTGTGAAGAATCAAA+TGG | 0.491491 | 1_4:+23514086 | Msa0156810:CDS |
| CATAGTATTGGCTTCTCATA+CGG | 0.492997 | 1_4:-23513660 | None:intergenic |
| CCAAGCAATGAGATAGGCAT+TGG | 0.496933 | 1_4:+23514213 | Msa0156810:CDS |
| ATTTGATTCTTCACAATCGA+TGG | 0.523804 | 1_4:-23514084 | None:intergenic |
| ACTTGTCGGATCTCCTCTTG+TGG | 0.537334 | 1_4:-23515639 | None:intergenic |
| ACAAGTCAGCTTCATGGATG+AGG | 0.543906 | 1_4:+23515656 | Msa0156810:CDS |
| ACAAAAGCTTCAAAGTCTAT+GGG | 0.556384 | 1_4:+23514119 | Msa0156810:CDS |
| CAAGAATGCTTTCAGAAGAA+GGG | 0.561983 | 1_4:+23515698 | Msa0156810:CDS |
| CAGATGCGAGTTATTTCGAA+AGG | 0.562922 | 1_4:-23515791 | None:intergenic |
| CCAATGCCTATCTCATTGCT+TGG | 0.566560 | 1_4:-23514213 | None:intergenic |
| ATTGAAGAAATTTCCACAAG+AGG | 0.566612 | 1_4:+23515626 | Msa0156810:CDS |
| CCAATACTATGTAATGCTTG+TGG | 0.579274 | 1_4:+23513672 | Msa0156810:CDS |
| CTTATGCATATGAGAGTAGG+TGG | 0.581630 | 1_4:-23515756 | None:intergenic |
| AGACTTATGCATATGAGAGT+AGG | 0.591978 | 1_4:-23515759 | None:intergenic |
| TAACAACAAGGAAAACAACT+GGG | 0.620441 | 1_4:+23515586 | Msa0156810:CDS |
| CTTCGGAAGATAGTTATCAA+GGG | 0.629882 | 1_4:-23513718 | None:intergenic |
| GATTGTGAAGAATCAAATGG+AGG | 0.680011 | 1_4:+23514089 | Msa0156810:CDS |
| AACAACAAGGAAAACAACTG+GGG | 0.698459 | 1_4:+23515587 | Msa0156810:CDS |
| ACTAAAGAGGAAGATCAACA+TGG | 0.714540 | 1_4:+23515551 | Msa0156810:intron |
| TGAGAACAAAGATAACAACA+AGG | 0.765280 | 1_4:+23515574 | Msa0156810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTGTTGAAAAATG+GGG | - | chr1_4:23513859-23513878 | None:intergenic | 15.0% |
| !!! | CTTTATATTTGTTGAAAAAT+GGG | - | chr1_4:23513860-23513879 | None:intergenic | 15.0% |
| !!! | ACTTTTAATTTTTTGTAGAA+AGG | + | chr1_4:23514058-23514077 | Msa0156810:intron | 15.0% |
| !! | TAAAAATTAAGGAAATATCA+TGG | - | chr1_4:23514589-23514608 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAATAAATGAGT+GGG | - | chr1_4:23515119-23515138 | None:intergenic | 15.0% |
| !! | ATAAAAAGAAAATAAATGAG+TGG | - | chr1_4:23515120-23515139 | None:intergenic | 15.0% |
| !! | ATTCTAAATGCAAAATTAAA+AGG | - | chr1_4:23515286-23515305 | None:intergenic | 15.0% |
| !!! | TTAATTTTGCATTTAGAATT+AGG | + | chr1_4:23515287-23515306 | Msa0156810:intron | 15.0% |
| !! | GGTTTATTAGTAATAATATT+AGG | + | chr1_4:23515344-23515363 | Msa0156810:intron | 15.0% |
| !!! | TTTATATTTGTTGAAAAATG+GGG | - | chr1_4:23513859-23513878 | None:intergenic | 15.0% |
| !!! | CTTTATATTTGTTGAAAAAT+GGG | - | chr1_4:23513860-23513879 | None:intergenic | 15.0% |
| !!! | ACTTTTAATTTTTTGTAGAA+AGG | + | chr1_4:23514058-23514077 | Msa0156810:intron | 15.0% |
| !! | TAAAAATTAAGGAAATATCA+TGG | - | chr1_4:23514589-23514608 | None:intergenic | 15.0% |
| !! | TAAAAAGAAAATAAATGAGT+GGG | - | chr1_4:23515119-23515138 | None:intergenic | 15.0% |
| !! | ATAAAAAGAAAATAAATGAG+TGG | - | chr1_4:23515120-23515139 | None:intergenic | 15.0% |
| !! | ATTCTAAATGCAAAATTAAA+AGG | - | chr1_4:23515286-23515305 | None:intergenic | 15.0% |
| !!! | TTAATTTTGCATTTAGAATT+AGG | + | chr1_4:23515287-23515306 | Msa0156810:intron | 15.0% |
| !! | GGTTTATTAGTAATAATATT+AGG | + | chr1_4:23515344-23515363 | Msa0156810:intron | 15.0% |
| !!! | ATTTTTTATTACCTGGAAAT+TGG | - | chr1_4:23513815-23513834 | None:intergenic | 20.0% |
| !!! | TTATTGCATTTTTTATTACC+TGG | - | chr1_4:23513822-23513841 | None:intergenic | 20.0% |
| !!! | GCTTTATATTTGTTGAAAAA+TGG | - | chr1_4:23513861-23513880 | None:intergenic | 20.0% |
| !!! | ATTGTAAGAATTTTCTTAAG+AGG | + | chr1_4:23513914-23513933 | Msa0156810:intron | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_4:23514038-23514057 | None:intergenic | 20.0% |
| !!! | ATTTTGAGAAATGATTTTGA+AGG | + | chr1_4:23514461-23514480 | Msa0156810:intron | 20.0% |
| !! | TCTAAAAAAAATACTCAACT+AGG | - | chr1_4:23514977-23514996 | None:intergenic | 20.0% |
| !! | AAAAAATGGTTAGTACTAAA+TGG | - | chr1_4:23515076-23515095 | None:intergenic | 20.0% |
| !!! | ACCATTTTTTTTTTCCATTT+AGG | + | chr1_4:23515086-23515105 | Msa0156810:intron | 20.0% |
| !! | TCCTAAATGGAAAAAAAAAA+TGG | - | chr1_4:23515090-23515109 | None:intergenic | 20.0% |
| !! | AAAAAGAAAATAAATGAGTG+GGG | - | chr1_4:23515118-23515137 | None:intergenic | 20.0% |
| !! | ACTATAGTAGTTAATTTAGA+TGG | + | chr1_4:23515372-23515391 | Msa0156810:intron | 20.0% |
| !! | AACTAAGATCAATTATCATT+AGG | + | chr1_4:23515427-23515446 | Msa0156810:intron | 20.0% |
| !!! | ATTTTTTATTACCTGGAAAT+TGG | - | chr1_4:23513815-23513834 | None:intergenic | 20.0% |
| !!! | TTATTGCATTTTTTATTACC+TGG | - | chr1_4:23513822-23513841 | None:intergenic | 20.0% |
| !!! | GCTTTATATTTGTTGAAAAA+TGG | - | chr1_4:23513861-23513880 | None:intergenic | 20.0% |
| !!! | ATTGTAAGAATTTTCTTAAG+AGG | + | chr1_4:23513914-23513933 | Msa0156810:intron | 20.0% |
| !! | TTATATGTATACATCATACA+CGG | - | chr1_4:23514038-23514057 | None:intergenic | 20.0% |
| !!! | ATTTTGAGAAATGATTTTGA+AGG | + | chr1_4:23514461-23514480 | Msa0156810:intron | 20.0% |
| !! | TCTAAAAAAAATACTCAACT+AGG | - | chr1_4:23514977-23514996 | None:intergenic | 20.0% |
| !! | AAAAAATGGTTAGTACTAAA+TGG | - | chr1_4:23515076-23515095 | None:intergenic | 20.0% |
| !!! | ACCATTTTTTTTTTCCATTT+AGG | + | chr1_4:23515086-23515105 | Msa0156810:intron | 20.0% |
| !! | TCCTAAATGGAAAAAAAAAA+TGG | - | chr1_4:23515090-23515109 | None:intergenic | 20.0% |
| !! | AAAAAGAAAATAAATGAGTG+GGG | - | chr1_4:23515118-23515137 | None:intergenic | 20.0% |
| !! | ACTATAGTAGTTAATTTAGA+TGG | + | chr1_4:23515372-23515391 | Msa0156810:intron | 20.0% |
| !! | AACTAAGATCAATTATCATT+AGG | + | chr1_4:23515427-23515446 | Msa0156810:intron | 20.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_4:23513628-23513647 | Msa0156810:CDS | 25.0% |
| ! | TATCCATAAATGTATGAATG+TGG | - | chr1_4:23513947-23513966 | None:intergenic | 25.0% |
| ! | TTATCTCTTAAACTTTCGAT+TGG | + | chr1_4:23514406-23514425 | Msa0156810:intron | 25.0% |
| ! | ACTTCGATATATGATATTGA+GGG | - | chr1_4:23514657-23514676 | None:intergenic | 25.0% |
| !! | AAGTCTATTCTTGATAGTTA+GGG | + | chr1_4:23514673-23514692 | Msa0156810:intron | 25.0% |
| !! | ATAGTTAGGGCATAATATTT+TGG | + | chr1_4:23514686-23514705 | Msa0156810:intron | 25.0% |
| !! | TAGTTAGGGCATAATATTTT+GGG | + | chr1_4:23514687-23514706 | Msa0156810:intron | 25.0% |
| !! | CAACTAGGACTAAATATTTT+TGG | - | chr1_4:23514962-23514981 | None:intergenic | 25.0% |
| !! | TATTTTCAGAGTCTTAGTTT+AGG | + | chr1_4:23515144-23515163 | Msa0156810:intron | 25.0% |
| !!! | TTCTTGTCTTTGATTTTGAT+TGG | - | chr1_4:23515684-23515703 | None:intergenic | 25.0% |
| !! | TTTTGACAGAAACTAAACTT+TGG | + | chr1_4:23513628-23513647 | Msa0156810:CDS | 25.0% |
| ! | TATCCATAAATGTATGAATG+TGG | - | chr1_4:23513947-23513966 | None:intergenic | 25.0% |
| ! | TTATCTCTTAAACTTTCGAT+TGG | + | chr1_4:23514406-23514425 | Msa0156810:intron | 25.0% |
| ! | ACTTCGATATATGATATTGA+GGG | - | chr1_4:23514657-23514676 | None:intergenic | 25.0% |
| !! | AAGTCTATTCTTGATAGTTA+GGG | + | chr1_4:23514673-23514692 | Msa0156810:intron | 25.0% |
| !! | ATAGTTAGGGCATAATATTT+TGG | + | chr1_4:23514686-23514705 | Msa0156810:intron | 25.0% |
| !! | TAGTTAGGGCATAATATTTT+GGG | + | chr1_4:23514687-23514706 | Msa0156810:intron | 25.0% |
| !! | CAACTAGGACTAAATATTTT+TGG | - | chr1_4:23514962-23514981 | None:intergenic | 25.0% |
| !! | TATTTTCAGAGTCTTAGTTT+AGG | + | chr1_4:23515144-23515163 | Msa0156810:intron | 25.0% |
| !!! | TTCTTGTCTTTGATTTTGAT+TGG | - | chr1_4:23515684-23515703 | None:intergenic | 25.0% |
| !! | GTCTGATAACTGATTTTGTT+GGG | - | chr1_4:23513748-23513767 | None:intergenic | 30.0% |
| ACTCCACATTCATACATTTA+TGG | + | chr1_4:23513941-23513960 | Msa0156810:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_4:23514087-23514106 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_4:23514086-23514105 | Msa0156810:CDS | 30.0% | |
| AACAAAAGCTTCAAAGTCTA+TGG | + | chr1_4:23514118-23514137 | Msa0156810:CDS | 30.0% | |
| ACAAAAGCTTCAAAGTCTAT+GGG | + | chr1_4:23514119-23514138 | Msa0156810:CDS | 30.0% | |
| TAGCCTAGTATATTGTGAAT+CGG | + | chr1_4:23514296-23514315 | Msa0156810:intron | 30.0% | |
| CTTCGATATATGATATTGAG+GGG | - | chr1_4:23514656-23514675 | None:intergenic | 30.0% | |
| GACTTCGATATATGATATTG+AGG | - | chr1_4:23514658-23514677 | None:intergenic | 30.0% | |
| ! | GAAGTCTATTCTTGATAGTT+AGG | + | chr1_4:23514672-23514691 | Msa0156810:intron | 30.0% |
| !! | GCATAATATTTTGGGTGTTA+CGG | + | chr1_4:23514695-23514714 | Msa0156810:intron | 30.0% |
| GAACAACAATTTCGTGTATT+CGG | + | chr1_4:23514717-23514736 | Msa0156810:intron | 30.0% | |
| ! | GATGCGTTGAATTTTGAATA+GGG | - | chr1_4:23514774-23514793 | None:intergenic | 30.0% |
| ! | TGATGCGTTGAATTTTGAAT+AGG | - | chr1_4:23514775-23514794 | None:intergenic | 30.0% |
| ! | AGGGTATGTTTATTCTTTTG+TGG | - | chr1_4:23514813-23514832 | None:intergenic | 30.0% |
| GTGAGTCGTAGTAAAAATAA+CGG | + | chr1_4:23515194-23515213 | Msa0156810:intron | 30.0% | |
| GATCGAGTCTATTTAACATT+AGG | + | chr1_4:23515237-23515256 | Msa0156810:intron | 30.0% | |
| ACTATTAGTCATAGAGTCTT+AGG | + | chr1_4:23515323-23515342 | Msa0156810:intron | 30.0% | |
| ! | TACAATTAGAGAGGTTGATT+AGG | - | chr1_4:23515482-23515501 | None:intergenic | 30.0% |
| ! | CATCTAGTTTACAATTAGAG+AGG | - | chr1_4:23515491-23515510 | None:intergenic | 30.0% |
| GTGTTGTATTAACTTCTTCA+AGG | + | chr1_4:23515521-23515540 | Msa0156810:intron | 30.0% | |
| ! | TTGATCTTCCTCTTTAGTTT+GGG | - | chr1_4:23515549-23515568 | None:intergenic | 30.0% |
| TGAGAACAAAGATAACAACA+AGG | + | chr1_4:23515574-23515593 | Msa0156810:CDS | 30.0% | |
| ATAACAACAAGGAAAACAAC+TGG | + | chr1_4:23515585-23515604 | Msa0156810:CDS | 30.0% | |
| TAACAACAAGGAAAACAACT+GGG | + | chr1_4:23515586-23515605 | Msa0156810:CDS | 30.0% | |
| AATTTCTTCAATCCTCCAAT+TGG | - | chr1_4:23515618-23515637 | None:intergenic | 30.0% | |
| ATTGAAGAAATTTCCACAAG+AGG | + | chr1_4:23515626-23515645 | Msa0156810:CDS | 30.0% | |
| !! | GTCTGATAACTGATTTTGTT+GGG | - | chr1_4:23513748-23513767 | None:intergenic | 30.0% |
| ACTCCACATTCATACATTTA+TGG | + | chr1_4:23513941-23513960 | Msa0156810:intron | 30.0% | |
| ATTTGATTCTTCACAATCGA+TGG | - | chr1_4:23514087-23514106 | None:intergenic | 30.0% | |
| ATCGATTGTGAAGAATCAAA+TGG | + | chr1_4:23514086-23514105 | Msa0156810:CDS | 30.0% | |
| AACAAAAGCTTCAAAGTCTA+TGG | + | chr1_4:23514118-23514137 | Msa0156810:CDS | 30.0% | |
| ACAAAAGCTTCAAAGTCTAT+GGG | + | chr1_4:23514119-23514138 | Msa0156810:CDS | 30.0% | |
| TAGCCTAGTATATTGTGAAT+CGG | + | chr1_4:23514296-23514315 | Msa0156810:intron | 30.0% | |
| CTTCGATATATGATATTGAG+GGG | - | chr1_4:23514656-23514675 | None:intergenic | 30.0% | |
| GACTTCGATATATGATATTG+AGG | - | chr1_4:23514658-23514677 | None:intergenic | 30.0% | |
| ! | GAAGTCTATTCTTGATAGTT+AGG | + | chr1_4:23514672-23514691 | Msa0156810:intron | 30.0% |
| !! | GCATAATATTTTGGGTGTTA+CGG | + | chr1_4:23514695-23514714 | Msa0156810:intron | 30.0% |
| GAACAACAATTTCGTGTATT+CGG | + | chr1_4:23514717-23514736 | Msa0156810:intron | 30.0% | |
| ! | GATGCGTTGAATTTTGAATA+GGG | - | chr1_4:23514774-23514793 | None:intergenic | 30.0% |
| ! | TGATGCGTTGAATTTTGAAT+AGG | - | chr1_4:23514775-23514794 | None:intergenic | 30.0% |
| ! | AGGGTATGTTTATTCTTTTG+TGG | - | chr1_4:23514813-23514832 | None:intergenic | 30.0% |
| GTGAGTCGTAGTAAAAATAA+CGG | + | chr1_4:23515194-23515213 | Msa0156810:intron | 30.0% | |
| GATCGAGTCTATTTAACATT+AGG | + | chr1_4:23515237-23515256 | Msa0156810:intron | 30.0% | |
| ACTATTAGTCATAGAGTCTT+AGG | + | chr1_4:23515323-23515342 | Msa0156810:intron | 30.0% | |
| ! | TACAATTAGAGAGGTTGATT+AGG | - | chr1_4:23515482-23515501 | None:intergenic | 30.0% |
| ! | CATCTAGTTTACAATTAGAG+AGG | - | chr1_4:23515491-23515510 | None:intergenic | 30.0% |
| GTGTTGTATTAACTTCTTCA+AGG | + | chr1_4:23515521-23515540 | Msa0156810:intron | 30.0% | |
| ! | TTGATCTTCCTCTTTAGTTT+GGG | - | chr1_4:23515549-23515568 | None:intergenic | 30.0% |
| TGAGAACAAAGATAACAACA+AGG | + | chr1_4:23515574-23515593 | Msa0156810:CDS | 30.0% | |
| ATAACAACAAGGAAAACAAC+TGG | + | chr1_4:23515585-23515604 | Msa0156810:CDS | 30.0% | |
| TAACAACAAGGAAAACAACT+GGG | + | chr1_4:23515586-23515605 | Msa0156810:CDS | 30.0% | |
| AATTTCTTCAATCCTCCAAT+TGG | - | chr1_4:23515618-23515637 | None:intergenic | 30.0% | |
| ATTGAAGAAATTTCCACAAG+AGG | + | chr1_4:23515626-23515645 | Msa0156810:CDS | 30.0% | |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_4:23513636-23513655 | Msa0156810:CDS | 35.0% | |
| !! | CATAGTATTGGCTTCTCATA+CGG | - | chr1_4:23513663-23513682 | None:intergenic | 35.0% |
| CCACAAGCATTACATAGTAT+TGG | - | chr1_4:23513675-23513694 | None:intergenic | 35.0% | |
| CCAATACTATGTAATGCTTG+TGG | + | chr1_4:23513672-23513691 | Msa0156810:CDS | 35.0% | |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_4:23513721-23513740 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_4:23513722-23513741 | None:intergenic | 35.0% | |
| ! | TGATTTTGTTGGGATGTCTT+CGG | - | chr1_4:23513738-23513757 | None:intergenic | 35.0% |
| !! | GGTCTGATAACTGATTTTGT+TGG | - | chr1_4:23513749-23513768 | None:intergenic | 35.0% |
| !! | TGGAAATTGGTTTGAAAGCT+CGG | - | chr1_4:23513802-23513821 | None:intergenic | 35.0% |
| TCATACACGGTACATATCAA+TGG | - | chr1_4:23514025-23514044 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_4:23514089-23514108 | Msa0156810:CDS | 35.0% | |
| TGTATACCAAGCAATGAGAT+AGG | + | chr1_4:23514207-23514226 | Msa0156810:CDS | 35.0% | |
| !! | ATGCCGATTCACAATATACT+AGG | - | chr1_4:23514302-23514321 | None:intergenic | 35.0% |
| !! | AATGATTTTGAAGGAGAGAG+TGG | + | chr1_4:23514470-23514489 | Msa0156810:intron | 35.0% |
| ! | AATGAAGCATCTCAAGAGAT+AGG | - | chr1_4:23514892-23514911 | None:intergenic | 35.0% |
| GTTGATCTTCCTCTTTAGTT+TGG | - | chr1_4:23515550-23515569 | None:intergenic | 35.0% | |
| ACTAAAGAGGAAGATCAACA+TGG | + | chr1_4:23515551-23515570 | Msa0156810:intron | 35.0% | |
| AACAACAAGGAAAACAACTG+GGG | + | chr1_4:23515587-23515606 | Msa0156810:CDS | 35.0% | |
| ACAAGAATGCTTTCAGAAGA+AGG | + | chr1_4:23515697-23515716 | Msa0156810:CDS | 35.0% | |
| CAAGAATGCTTTCAGAAGAA+GGG | + | chr1_4:23515698-23515717 | Msa0156810:CDS | 35.0% | |
| AGACTTATGCATATGAGAGT+AGG | - | chr1_4:23515762-23515781 | None:intergenic | 35.0% | |
| GAAACTAAACTTTGGCGTAA+AGG | + | chr1_4:23513636-23513655 | Msa0156810:CDS | 35.0% | |
| !! | CATAGTATTGGCTTCTCATA+CGG | - | chr1_4:23513663-23513682 | None:intergenic | 35.0% |
| CCACAAGCATTACATAGTAT+TGG | - | chr1_4:23513675-23513694 | None:intergenic | 35.0% | |
| CCAATACTATGTAATGCTTG+TGG | + | chr1_4:23513672-23513691 | Msa0156810:CDS | 35.0% | |
| CTTCGGAAGATAGTTATCAA+GGG | - | chr1_4:23513721-23513740 | None:intergenic | 35.0% | |
| TCTTCGGAAGATAGTTATCA+AGG | - | chr1_4:23513722-23513741 | None:intergenic | 35.0% | |
| ! | TGATTTTGTTGGGATGTCTT+CGG | - | chr1_4:23513738-23513757 | None:intergenic | 35.0% |
| !! | GGTCTGATAACTGATTTTGT+TGG | - | chr1_4:23513749-23513768 | None:intergenic | 35.0% |
| !! | TGGAAATTGGTTTGAAAGCT+CGG | - | chr1_4:23513802-23513821 | None:intergenic | 35.0% |
| TCATACACGGTACATATCAA+TGG | - | chr1_4:23514025-23514044 | None:intergenic | 35.0% | |
| GATTGTGAAGAATCAAATGG+AGG | + | chr1_4:23514089-23514108 | Msa0156810:CDS | 35.0% | |
| TGTATACCAAGCAATGAGAT+AGG | + | chr1_4:23514207-23514226 | Msa0156810:CDS | 35.0% | |
| !! | ATGCCGATTCACAATATACT+AGG | - | chr1_4:23514302-23514321 | None:intergenic | 35.0% |
| !! | AATGATTTTGAAGGAGAGAG+TGG | + | chr1_4:23514470-23514489 | Msa0156810:intron | 35.0% |
| ! | AATGAAGCATCTCAAGAGAT+AGG | - | chr1_4:23514892-23514911 | None:intergenic | 35.0% |
| GTTGATCTTCCTCTTTAGTT+TGG | - | chr1_4:23515550-23515569 | None:intergenic | 35.0% | |
| ACTAAAGAGGAAGATCAACA+TGG | + | chr1_4:23515551-23515570 | Msa0156810:intron | 35.0% | |
| AACAACAAGGAAAACAACTG+GGG | + | chr1_4:23515587-23515606 | Msa0156810:CDS | 35.0% | |
| ACAAGAATGCTTTCAGAAGA+AGG | + | chr1_4:23515697-23515716 | Msa0156810:CDS | 35.0% | |
| CAAGAATGCTTTCAGAAGAA+GGG | + | chr1_4:23515698-23515717 | Msa0156810:CDS | 35.0% | |
| AGACTTATGCATATGAGAGT+AGG | - | chr1_4:23515762-23515781 | None:intergenic | 35.0% | |
| ! | TGCTTGTGGACTACATTTCA+AGG | + | chr1_4:23513686-23513705 | Msa0156810:CDS | 40.0% |
| GGACTACATTTCAAGGCTAA+AGG | + | chr1_4:23513693-23513712 | Msa0156810:CDS | 40.0% | |
| ATCAGACCTTGACGTTGAAA+AGG | + | chr1_4:23513761-23513780 | Msa0156810:CDS | 40.0% | |
| ! | CAGATTCCTTTTCAACGTCA+AGG | - | chr1_4:23513770-23513789 | None:intergenic | 40.0% |
| !! | GGAAATTGGTTTGAAAGCTC+GGG | - | chr1_4:23513801-23513820 | None:intergenic | 40.0% |
| GAGCTTTCAAACCAATTTCC+AGG | + | chr1_4:23513801-23513820 | Msa0156810:CDS | 40.0% | |
| AATTTCGTGTATTCGGAGAC+TGG | + | chr1_4:23514724-23514743 | Msa0156810:intron | 40.0% | |
| ! | GCGTTGAATTTTGAATAGGG+AGG | - | chr1_4:23514771-23514790 | None:intergenic | 40.0% |
| TCAAGAGATAGGCAAGCAAT+AGG | - | chr1_4:23514881-23514900 | None:intergenic | 40.0% | |
| AGATGGAGTCTGTTAAGTCT+AGG | + | chr1_4:23515389-23515408 | Msa0156810:intron | 40.0% | |
| ! | TCAAGGTACCCAAACTAAAG+AGG | + | chr1_4:23515538-23515557 | Msa0156810:intron | 40.0% |
| ACAACTGGGGAAAAACCAAT+TGG | + | chr1_4:23515600-23515619 | Msa0156810:CDS | 40.0% | |
| CTTATGCATATGAGAGTAGG+TGG | - | chr1_4:23515759-23515778 | None:intergenic | 40.0% | |
| ! | TGCTTGTGGACTACATTTCA+AGG | + | chr1_4:23513686-23513705 | Msa0156810:CDS | 40.0% |
| GGACTACATTTCAAGGCTAA+AGG | + | chr1_4:23513693-23513712 | Msa0156810:CDS | 40.0% | |
| ATCAGACCTTGACGTTGAAA+AGG | + | chr1_4:23513761-23513780 | Msa0156810:CDS | 40.0% | |
| ! | CAGATTCCTTTTCAACGTCA+AGG | - | chr1_4:23513770-23513789 | None:intergenic | 40.0% |
| !! | GGAAATTGGTTTGAAAGCTC+GGG | - | chr1_4:23513801-23513820 | None:intergenic | 40.0% |
| GAGCTTTCAAACCAATTTCC+AGG | + | chr1_4:23513801-23513820 | Msa0156810:CDS | 40.0% | |
| AATTTCGTGTATTCGGAGAC+TGG | + | chr1_4:23514724-23514743 | Msa0156810:intron | 40.0% | |
| ! | GCGTTGAATTTTGAATAGGG+AGG | - | chr1_4:23514771-23514790 | None:intergenic | 40.0% |
| TCAAGAGATAGGCAAGCAAT+AGG | - | chr1_4:23514881-23514900 | None:intergenic | 40.0% | |
| AGATGGAGTCTGTTAAGTCT+AGG | + | chr1_4:23515389-23515408 | Msa0156810:intron | 40.0% | |
| ! | TCAAGGTACCCAAACTAAAG+AGG | + | chr1_4:23515538-23515557 | Msa0156810:intron | 40.0% |
| ACAACTGGGGAAAAACCAAT+TGG | + | chr1_4:23515600-23515619 | Msa0156810:CDS | 40.0% | |
| CTTATGCATATGAGAGTAGG+TGG | - | chr1_4:23515759-23515778 | None:intergenic | 40.0% | |
| CCAATGCCTATCTCATTGCT+TGG | - | chr1_4:23514216-23514235 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGCAT+TGG | + | chr1_4:23514213-23514232 | Msa0156810:CDS | 45.0% | |
| ACCTCAGTCTCTACTCTCTA+GGG | - | chr1_4:23514832-23514851 | None:intergenic | 45.0% | |
| AACCTCAGTCTCTACTCTCT+AGG | - | chr1_4:23514833-23514852 | None:intergenic | 45.0% | |
| !! | GAGTGGGGTTAGTTCCTAAA+TGG | - | chr1_4:23515103-23515122 | None:intergenic | 45.0% |
| ACTGGGGAAAAACCAATTGG+AGG | + | chr1_4:23515603-23515622 | Msa0156810:CDS | 45.0% | |
| !! | CATCCATGAAGCTGACTTGT+CGG | - | chr1_4:23515656-23515675 | None:intergenic | 45.0% |
| ACAAGTCAGCTTCATGGATG+AGG | + | chr1_4:23515656-23515675 | Msa0156810:CDS | 45.0% | |
| CCAATGCCTATCTCATTGCT+TGG | - | chr1_4:23514216-23514235 | None:intergenic | 45.0% | |
| CCAAGCAATGAGATAGGCAT+TGG | + | chr1_4:23514213-23514232 | Msa0156810:CDS | 45.0% | |
| ACCTCAGTCTCTACTCTCTA+GGG | - | chr1_4:23514832-23514851 | None:intergenic | 45.0% | |
| AACCTCAGTCTCTACTCTCT+AGG | - | chr1_4:23514833-23514852 | None:intergenic | 45.0% | |
| !! | GAGTGGGGTTAGTTCCTAAA+TGG | - | chr1_4:23515103-23515122 | None:intergenic | 45.0% |
| ACTGGGGAAAAACCAATTGG+AGG | + | chr1_4:23515603-23515622 | Msa0156810:CDS | 45.0% | |
| !! | CATCCATGAAGCTGACTTGT+CGG | - | chr1_4:23515656-23515675 | None:intergenic | 45.0% |
| ACAAGTCAGCTTCATGGATG+AGG | + | chr1_4:23515656-23515675 | Msa0156810:CDS | 45.0% | |
| !! | TAAAATATTTGTAAAAATTA+AGG | - | chr1_4:23514600-23514619 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTTTAAATTG+AGG | - | chr1_4:23514629-23514648 | None:intergenic | 5.0% |
| !! | TAAAATATTTGTAAAAATTA+AGG | - | chr1_4:23514600-23514619 | None:intergenic | 5.0% |
| !!! | TTTTTTATTTTTTTAAATTG+AGG | - | chr1_4:23514629-23514648 | None:intergenic | 5.0% |
| TAGGGAGGATGATGAAGTCG+AGG | - | chr1_4:23514756-23514775 | None:intergenic | 50.0% | |
| ACCCTAGAGAGTAGAGACTG+AGG | + | chr1_4:23514828-23514847 | Msa0156810:intron | 50.0% | |
| GAGAGTAGAGACTGAGGTTG+AGG | + | chr1_4:23514834-23514853 | Msa0156810:intron | 50.0% | |
| GCAAGCAATAGGAGCCTCAA+GGG | - | chr1_4:23514870-23514889 | None:intergenic | 50.0% | |
| ACTTGTCGGATCTCCTCTTG+TGG | - | chr1_4:23515642-23515661 | None:intergenic | 50.0% | |
| GATCCGACAAGTCAGCTTCA+TGG | + | chr1_4:23515650-23515669 | Msa0156810:CDS | 50.0% | |
| TAGGGAGGATGATGAAGTCG+AGG | - | chr1_4:23514756-23514775 | None:intergenic | 50.0% | |
| ACCCTAGAGAGTAGAGACTG+AGG | + | chr1_4:23514828-23514847 | Msa0156810:intron | 50.0% | |
| GAGAGTAGAGACTGAGGTTG+AGG | + | chr1_4:23514834-23514853 | Msa0156810:intron | 50.0% | |
| GCAAGCAATAGGAGCCTCAA+GGG | - | chr1_4:23514870-23514889 | None:intergenic | 50.0% | |
| ACTTGTCGGATCTCCTCTTG+TGG | - | chr1_4:23515642-23515661 | None:intergenic | 50.0% | |
| GATCCGACAAGTCAGCTTCA+TGG | + | chr1_4:23515650-23515669 | Msa0156810:CDS | 50.0% | |
| GGAGGATGATGAAGTCGAGG+AGG | - | chr1_4:23514753-23514772 | None:intergenic | 55.0% | |
| GAGGATAGACTCCTCCCTTG+AGG | + | chr1_4:23514853-23514872 | Msa0156810:intron | 55.0% | |
| AGCAATAGGAGCCTCAAGGG+AGG | - | chr1_4:23514867-23514886 | None:intergenic | 55.0% | |
| GGCAAGCAATAGGAGCCTCA+AGG | - | chr1_4:23514871-23514890 | None:intergenic | 55.0% | |
| GGAGGATGATGAAGTCGAGG+AGG | - | chr1_4:23514753-23514772 | None:intergenic | 55.0% | |
| GAGGATAGACTCCTCCCTTG+AGG | + | chr1_4:23514853-23514872 | Msa0156810:intron | 55.0% | |
| AGCAATAGGAGCCTCAAGGG+AGG | - | chr1_4:23514867-23514886 | None:intergenic | 55.0% | |
| GGCAAGCAATAGGAGCCTCA+AGG | - | chr1_4:23514871-23514890 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 23513619 | 23515800 | 23513619 | ID=Msa0156810;Name=Msa0156810 |
| chr1_4 | mRNA | 23513619 | 23515800 | 23513619 | ID=Msa0156810-mRNA-1;Parent=Msa0156810;Name=Msa0156810-mRNA-1;_AED=0.27;_eAED=0.31;_QI=5|0|0|1|0.5|0.33|3|0|206 |
| chr1_4 | exon | 23513619 | 23513822 | 23513619 | ID=Msa0156810-mRNA-1:exon:8228;Parent=Msa0156810-mRNA-1 |
| chr1_4 | exon | 23514076 | 23514257 | 23514076 | ID=Msa0156810-mRNA-1:exon:8229;Parent=Msa0156810-mRNA-1 |
| chr1_4 | exon | 23515564 | 23515800 | 23515564 | ID=Msa0156810-mRNA-1:exon:8230;Parent=Msa0156810-mRNA-1 |
| chr1_4 | five_prime_UTR | 23513619 | 23513623 | 23513619 | ID=Msa0156810-mRNA-1:five_prime_utr;Parent=Msa0156810-mRNA-1 |
| chr1_4 | CDS | 23513624 | 23513822 | 23513624 | ID=Msa0156810-mRNA-1:cds;Parent=Msa0156810-mRNA-1 |
| chr1_4 | CDS | 23514076 | 23514257 | 23514076 | ID=Msa0156810-mRNA-1:cds;Parent=Msa0156810-mRNA-1 |
| chr1_4 | CDS | 23515564 | 23515800 | 23515564 | ID=Msa0156810-mRNA-1:cds;Parent=Msa0156810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
