Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156950 | QSD99879.1 | 69.611 | 283 | 61 | 5 | 1 | 258 | 1 | 283 | 1.97e-128 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156950 | sp|Q9FY93|NAC83_ARATH | 33.103 | 145 | 84 | 5 | 13 | 154 | 22 | 156 | 1.13e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156950 | A0A896WBW5 | 69.611 | 283 | 61 | 5 | 1 | 258 | 1 | 283 | 9.40e-129 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0156950 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156950 | MtrunA17_Chr1g0168571 | 90.503 | 179 | 17 | 0 | 1 | 179 | 1 | 179 | 4.37e-119 | 343 |
| Msa0156950 | MtrunA17_Chr1g0168571 | 83.544 | 79 | 9 | 1 | 184 | 258 | 247 | 325 | 1.01e-34 | 127 |
| Msa0156950 | MtrunA17_Chr1g0174911 | 48.328 | 329 | 91 | 10 | 1 | 257 | 1 | 322 | 5.87e-81 | 246 |
| Msa0156950 | MtrunA17_Chr7g0274971 | 60.914 | 197 | 65 | 2 | 1 | 185 | 1 | 197 | 2.65e-80 | 240 |
| Msa0156950 | MtrunA17_Chr7g0263931 | 32.903 | 155 | 85 | 6 | 13 | 157 | 19 | 164 | 5.94e-16 | 76.3 |
| Msa0156950 | MtrunA17_Chr7g0214071 | 32.639 | 144 | 85 | 4 | 13 | 154 | 23 | 156 | 1.63e-15 | 73.9 |
| Msa0156950 | MtrunA17_Chr8g0385991 | 32.692 | 156 | 79 | 6 | 13 | 155 | 22 | 164 | 4.80e-12 | 63.9 |
| Msa0156950 | MtrunA17_Chr3g0130101 | 32.544 | 169 | 95 | 10 | 13 | 174 | 15 | 171 | 5.79e-12 | 64.7 |
| Msa0156950 | MtrunA17_Chr8g0384721 | 31.343 | 201 | 112 | 9 | 13 | 205 | 15 | 197 | 1.40e-11 | 63.2 |
| Msa0156950 | MtrunA17_Chr7g0261411 | 29.861 | 144 | 90 | 5 | 13 | 154 | 18 | 152 | 1.80e-11 | 63.2 |
| Msa0156950 | MtrunA17_Chr1g0200561 | 30.323 | 155 | 98 | 7 | 13 | 163 | 27 | 175 | 2.05e-11 | 63.2 |
| Msa0156950 | MtrunA17_Chr4g0047841 | 33.071 | 127 | 76 | 4 | 13 | 137 | 23 | 142 | 3.20e-11 | 62.8 |
| Msa0156950 | MtrunA17_Chr5g0417791 | 28.283 | 198 | 107 | 9 | 13 | 202 | 11 | 181 | 4.34e-11 | 61.6 |
| Msa0156950 | MtrunA17_Chr3g0109821 | 32.075 | 159 | 91 | 8 | 13 | 163 | 14 | 163 | 4.56e-11 | 62.8 |
| Msa0156950 | MtrunA17_Chr2g0309891 | 27.933 | 179 | 117 | 6 | 13 | 186 | 14 | 185 | 6.52e-11 | 61.6 |
| Msa0156950 | MtrunA17_Chr4g0056541 | 31.373 | 153 | 96 | 6 | 13 | 162 | 15 | 161 | 9.56e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156950 | AT5G13180.1 | 33.103 | 145 | 84 | 5 | 13 | 154 | 22 | 156 | 1.15e-13 | 69.3 |
| Msa0156950 | AT2G33480.2 | 32.639 | 144 | 83 | 5 | 13 | 154 | 23 | 154 | 2.48e-13 | 68.6 |
| Msa0156950 | AT5G62380.2 | 32.450 | 151 | 93 | 6 | 13 | 160 | 15 | 159 | 4.26e-13 | 68.6 |
| Msa0156950 | AT5G62380.1 | 32.450 | 151 | 93 | 6 | 13 | 160 | 15 | 159 | 4.26e-13 | 68.6 |
| Msa0156950 | AT3G10480.2 | 32.484 | 157 | 92 | 8 | 13 | 163 | 35 | 183 | 1.09e-12 | 67.8 |
| Msa0156950 | AT2G33480.1 | 32.192 | 146 | 83 | 6 | 13 | 154 | 23 | 156 | 3.32e-12 | 65.1 |
| Msa0156950 | AT3G10480.1 | 32.278 | 158 | 92 | 8 | 13 | 163 | 35 | 184 | 5.55e-12 | 65.5 |
| Msa0156950 | AT5G63790.1 | 32.919 | 161 | 89 | 6 | 3 | 154 | 48 | 198 | 6.80e-12 | 64.7 |
| Msa0156950 | AT2G24430.2 | 29.730 | 148 | 94 | 5 | 13 | 157 | 24 | 164 | 7.09e-12 | 64.7 |
| Msa0156950 | AT2G24430.1 | 29.730 | 148 | 94 | 5 | 13 | 157 | 24 | 164 | 7.09e-12 | 64.7 |
| Msa0156950 | AT5G63790.2 | 32.919 | 161 | 89 | 6 | 3 | 154 | 58 | 208 | 7.90e-12 | 64.7 |
| Msa0156950 | AT5G08790.1 | 32.086 | 187 | 104 | 8 | 3 | 179 | 5 | 178 | 8.66e-12 | 64.3 |
| Msa0156950 | AT5G66300.1 | 29.747 | 158 | 102 | 6 | 13 | 167 | 20 | 171 | 2.28e-11 | 63.2 |
| Msa0156950 | AT1G56010.2 | 29.000 | 200 | 112 | 11 | 13 | 195 | 27 | 213 | 5.35e-11 | 62.4 |
| Msa0156950 | AT1G33060.2 | 31.081 | 148 | 89 | 6 | 13 | 155 | 32 | 171 | 7.86e-11 | 62.4 |
| Msa0156950 | AT1G33060.1 | 31.081 | 148 | 89 | 6 | 13 | 155 | 32 | 171 | 8.85e-11 | 62.4 |
| Msa0156950 | AT3G15510.1 | 30.247 | 162 | 90 | 7 | 13 | 158 | 25 | 179 | 9.08e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGCAGATTTCTTCTTTA+AGG | 0.216337 | 1_4:+23783787 | None:intergenic |
| CCTCAATTCTTCTTCCAATA+AGG | 0.222490 | 1_4:-23783999 | Msa0156950:CDS |
| CAAAGAATCCATGGGAGATT+TGG | 0.252767 | 1_4:-23783865 | Msa0156950:CDS |
| TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1_4:+23783476 | None:intergenic |
| GCACGATTGGACTTGGTAGA+TGG | 0.297751 | 1_4:-23783748 | Msa0156950:CDS |
| TAAAACTGATTAGATATCAT+TGG | 0.358778 | 1_4:+23782262 | None:intergenic |
| AGTGGGTGCGATAACCTTAT+TGG | 0.366373 | 1_4:+23783985 | None:intergenic |
| TGTAGGAAAACAATAATGTT+TGG | 0.371866 | 1_4:-23782460 | Msa0156950:intron |
| AAAGAATCCATGGGAGATTT+GGG | 0.379921 | 1_4:-23783864 | Msa0156950:CDS |
| GAAAACAATAATGTTTGGTT+GGG | 0.380843 | 1_4:-23782455 | Msa0156950:CDS |
| TTCAAGAATGGTGATATGAT+TGG | 0.399692 | 1_4:+23783907 | None:intergenic |
| TTCTTTGATGAGCAATCCTT+TGG | 0.402852 | 1_4:-23783588 | Msa0156950:intron |
| TTAAGGTTGTAAAGAAGTAT+AGG | 0.426160 | 1_4:+23783804 | None:intergenic |
| GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1_4:+23783630 | None:intergenic |
| CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1_4:+23783631 | None:intergenic |
| ATTCTTGAATATGATTTGTT+CGG | 0.434843 | 1_4:-23783893 | Msa0156950:CDS |
| AGATGGGAAGGTGAAGATGC+TGG | 0.438944 | 1_4:-23783731 | Msa0156950:CDS |
| AACAATAATGTTTGGTTGGG+GGG | 0.451780 | 1_4:-23782452 | Msa0156950:CDS |
| CTTATTGGAAGAAGAATTGA+GGG | 0.451784 | 1_4:+23784000 | None:intergenic |
| GGAAAACAATAATGTTTGGT+TGG | 0.452565 | 1_4:-23782456 | Msa0156950:CDS |
| TCAAGAATGGTGATATGATT+GGG | 0.471621 | 1_4:+23783908 | None:intergenic |
| TGGGAGATTTGGGAAGAGTT+CGG | 0.477611 | 1_4:-23783854 | Msa0156950:CDS |
| AATCTCCCATGGATTCTTTG+CGG | 0.489258 | 1_4:+23783868 | None:intergenic |
| CACGATTGGACTTGGTAGAT+GGG | 0.503218 | 1_4:-23783747 | Msa0156950:CDS |
| GATTTGTTAAGTTGATCACT+TGG | 0.507587 | 1_4:+23782412 | None:intergenic |
| AAAACAATAATGTTTGGTTG+GGG | 0.516242 | 1_4:-23782454 | Msa0156950:CDS |
| GAACAAATCATATTCAAGAA+TGG | 0.524428 | 1_4:+23783895 | None:intergenic |
| GTAGTTCGCACGATTGGACT+TGG | 0.524941 | 1_4:-23783755 | Msa0156950:CDS |
| CCTTATTGGAAGAAGAATTG+AGG | 0.526520 | 1_4:+23783999 | None:intergenic |
| AACTCTTCCCAAATCTCCCA+TGG | 0.530624 | 1_4:+23783857 | None:intergenic |
| GATGGGAAGGTGAAGATGCT+GGG | 0.538585 | 1_4:-23783730 | Msa0156950:CDS |
| TCGGCACCGCAAAGAATCCA+TGG | 0.544845 | 1_4:-23783874 | Msa0156950:CDS |
| AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1_4:-23783644 | Msa0156950:CDS |
| TTGTAGAAGTTCATCATCAG+TGG | 0.566028 | 1_4:+23783967 | None:intergenic |
| GATTGCTCATCAAAGAATTG+TGG | 0.568139 | 1_4:+23783594 | None:intergenic |
| GCGAACTACGCGTGAGCTAG+TGG | 0.571047 | 1_4:+23783769 | None:intergenic |
| ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1_4:-23783637 | Msa0156950:CDS |
| ATGCTGATGATATTATGTCT+TGG | 0.578959 | 1_4:-23782351 | Msa0156950:CDS |
| TCACGCGTAGTTCGCACGAT+TGG | 0.582348 | 1_4:-23783761 | Msa0156950:CDS |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1_4:+23782328 | None:intergenic |
| AAACAATAATGTTTGGTTGG+GGG | 0.603191 | 1_4:-23782453 | Msa0156950:CDS |
| ATGGTGATATGATTGGGCAA+AGG | 0.612759 | 1_4:+23783914 | None:intergenic |
| ATTGGACTTGGTAGATGGGA+AGG | 0.613480 | 1_4:-23783743 | Msa0156950:CDS |
| TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1_4:-23782293 | Msa0156950:CDS |
| TGTAGAAGTTCATCATCAGT+GGG | 0.615614 | 1_4:+23783968 | None:intergenic |
| AAAGACAAGAAACAAATCCT+CGG | 0.617591 | 1_4:-23783692 | Msa0156950:CDS |
| CAGCTGAGAGAGATGAATGA+AGG | 0.618301 | 1_4:-23782310 | Msa0156950:CDS |
| CGGCACCGCAAAGAATCCAT+GGG | 0.621679 | 1_4:-23783873 | Msa0156950:CDS |
| TGCTCATCAAAGAATTGTGG+AGG | 0.628029 | 1_4:+23783597 | None:intergenic |
| AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1_4:-23783641 | Msa0156950:CDS |
| GGAACTTCCTACTCGTATCG+AGG | 0.686922 | 1_4:-23783833 | Msa0156950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATCTAATCTTTTTAC+CGG | + | chr1_4:23782973-23782992 | None:intergenic | 15.0% |
| !!! | TCATTGAAGTATTTTTTTTA+AGG | - | chr1_4:23783235-23783254 | Msa0156950:intron | 15.0% |
| !!! | CATTGAAGTATTTTTTTTAA+GGG | - | chr1_4:23783236-23783255 | Msa0156950:intron | 15.0% |
| !! | TTACATAAAATAAAATGTGA+AGG | + | chr1_4:23783597-23783616 | None:intergenic | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+CGG | + | chr1_4:23782973-23782992 | None:intergenic | 15.0% |
| !!! | TCATTGAAGTATTTTTTTTA+AGG | - | chr1_4:23783235-23783254 | Msa0156950:intron | 15.0% |
| !!! | CATTGAAGTATTTTTTTTAA+GGG | - | chr1_4:23783236-23783255 | Msa0156950:intron | 15.0% |
| !! | TTACATAAAATAAAATGTGA+AGG | + | chr1_4:23783597-23783616 | None:intergenic | 15.0% |
| !!! | ATTCTTGAATATGATTTGTT+CGG | - | chr1_4:23782336-23782355 | Msa0156950:CDS | 20.0% |
| !!! | ATATTATGTTATTTACGCTT+TGG | - | chr1_4:23782914-23782933 | Msa0156950:intron | 20.0% |
| !!! | AAAAAGTATATCCTTTTTGA+TGG | + | chr1_4:23783014-23783033 | None:intergenic | 20.0% |
| !!! | ATCAAAAAGGATATACTTTT+TGG | - | chr1_4:23783013-23783032 | Msa0156950:intron | 20.0% |
| !!! | ATCCATTCAAAATACTTTTT+TGG | - | chr1_4:23783121-23783140 | Msa0156950:intron | 20.0% |
| !!! | TTCCAAAAAAGTATTTTGAA+TGG | + | chr1_4:23783126-23783145 | None:intergenic | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_4:23783383-23783402 | Msa0156950:intron | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_4:23783388-23783407 | Msa0156950:intron | 20.0% |
| !! | AAATCATAGTTAAAGTCATT+TGG | + | chr1_4:23783645-23783664 | None:intergenic | 20.0% |
| !! | TAAAACTGATTAGATATCAT+TGG | + | chr1_4:23783970-23783989 | None:intergenic | 20.0% |
| !!! | GATATCTAATCAGTTTTATA+AGG | - | chr1_4:23783972-23783991 | Msa0156950:CDS | 20.0% |
| !!! | ATTCTTGAATATGATTTGTT+CGG | - | chr1_4:23782336-23782355 | Msa0156950:CDS | 20.0% |
| !!! | ATATTATGTTATTTACGCTT+TGG | - | chr1_4:23782914-23782933 | Msa0156950:intron | 20.0% |
| !!! | AAAAAGTATATCCTTTTTGA+TGG | + | chr1_4:23783014-23783033 | None:intergenic | 20.0% |
| !!! | ATCAAAAAGGATATACTTTT+TGG | - | chr1_4:23783013-23783032 | Msa0156950:intron | 20.0% |
| !!! | ATCCATTCAAAATACTTTTT+TGG | - | chr1_4:23783121-23783140 | Msa0156950:intron | 20.0% |
| !!! | TTCCAAAAAAGTATTTTGAA+TGG | + | chr1_4:23783126-23783145 | None:intergenic | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_4:23783383-23783402 | Msa0156950:intron | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_4:23783388-23783407 | Msa0156950:intron | 20.0% |
| !! | AAATCATAGTTAAAGTCATT+TGG | + | chr1_4:23783645-23783664 | None:intergenic | 20.0% |
| !! | TAAAACTGATTAGATATCAT+TGG | + | chr1_4:23783970-23783989 | None:intergenic | 20.0% |
| !!! | GATATCTAATCAGTTTTATA+AGG | - | chr1_4:23783972-23783991 | Msa0156950:CDS | 20.0% |
| ! | GAACAAATCATATTCAAGAA+TGG | + | chr1_4:23782337-23782356 | None:intergenic | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_4:23782428-23782447 | None:intergenic | 25.0% |
| !!! | TTTTGTATCTTGTTTTTTGC+AGG | - | chr1_4:23782730-23782749 | Msa0156950:intron | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_4:23782756-23782775 | None:intergenic | 25.0% |
| ! | TTATGATATTGTTGTGTTTC+CGG | - | chr1_4:23782951-23782970 | Msa0156950:intron | 25.0% |
| ! | TGAATGGATAGAATTGATAA+AGG | + | chr1_4:23783110-23783129 | None:intergenic | 25.0% |
| !!! | AACATTGTTCTTTTTCATTC+TGG | - | chr1_4:23783275-23783294 | Msa0156950:intron | 25.0% |
| !! | TTTTTCATTCTGGATTTGTA+GGG | - | chr1_4:23783285-23783304 | Msa0156950:intron | 25.0% |
| ! | GAACCAACAAAAAAATCAAA+CGG | - | chr1_4:23783333-23783352 | Msa0156950:intron | 25.0% |
| !! | ATGAAAGAGCACAATAATAA+GGG | + | chr1_4:23783741-23783760 | None:intergenic | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_4:23783742-23783761 | None:intergenic | 25.0% |
| ! | TGTAGGAAAACAATAATGTT+TGG | - | chr1_4:23783769-23783788 | Msa0156950:CDS | 25.0% |
| ! | GAAAACAATAATGTTTGGTT+GGG | - | chr1_4:23783774-23783793 | Msa0156950:CDS | 25.0% |
| ! | AAAACAATAATGTTTGGTTG+GGG | - | chr1_4:23783775-23783794 | Msa0156950:CDS | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1_4:23783984-23784003 | Msa0156950:CDS | 25.0% |
| ! | GAACAAATCATATTCAAGAA+TGG | + | chr1_4:23782337-23782356 | None:intergenic | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_4:23782428-23782447 | None:intergenic | 25.0% |
| !!! | TTTTGTATCTTGTTTTTTGC+AGG | - | chr1_4:23782730-23782749 | Msa0156950:intron | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_4:23782756-23782775 | None:intergenic | 25.0% |
| ! | TTATGATATTGTTGTGTTTC+CGG | - | chr1_4:23782951-23782970 | Msa0156950:intron | 25.0% |
| ! | TGAATGGATAGAATTGATAA+AGG | + | chr1_4:23783110-23783129 | None:intergenic | 25.0% |
| !!! | AACATTGTTCTTTTTCATTC+TGG | - | chr1_4:23783275-23783294 | Msa0156950:intron | 25.0% |
| !! | TTTTTCATTCTGGATTTGTA+GGG | - | chr1_4:23783285-23783304 | Msa0156950:intron | 25.0% |
| ! | GAACCAACAAAAAAATCAAA+CGG | - | chr1_4:23783333-23783352 | Msa0156950:intron | 25.0% |
| !! | ATGAAAGAGCACAATAATAA+GGG | + | chr1_4:23783741-23783760 | None:intergenic | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_4:23783742-23783761 | None:intergenic | 25.0% |
| ! | TGTAGGAAAACAATAATGTT+TGG | - | chr1_4:23783769-23783788 | Msa0156950:CDS | 25.0% |
| ! | GAAAACAATAATGTTTGGTT+GGG | - | chr1_4:23783774-23783793 | Msa0156950:CDS | 25.0% |
| ! | AAAACAATAATGTTTGGTTG+GGG | - | chr1_4:23783775-23783794 | Msa0156950:CDS | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1_4:23783984-23784003 | Msa0156950:CDS | 25.0% |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_4:23782232-23782251 | None:intergenic | 30.0% | |
| !! | TGTTGTGAATTTTGTTGTAG+AGG | + | chr1_4:23782293-23782312 | None:intergenic | 30.0% |
| TCAAGAATGGTGATATGATT+GGG | + | chr1_4:23782324-23782343 | None:intergenic | 30.0% | |
| TTCAAGAATGGTGATATGAT+TGG | + | chr1_4:23782325-23782344 | None:intergenic | 30.0% | |
| AAAGACAAGAAACAAATCCT+CGG | - | chr1_4:23782537-23782556 | Msa0156950:intron | 30.0% | |
| AATCATGCACCAAATAACTA+GGG | + | chr1_4:23782707-23782726 | None:intergenic | 30.0% | |
| AAATCATGCACCAAATAACT+AGG | + | chr1_4:23782708-23782727 | None:intergenic | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_4:23782803-23782822 | None:intergenic | 30.0% |
| AAGAACAACAAAATTCTTGC+AGG | + | chr1_4:23782887-23782906 | None:intergenic | 30.0% | |
| AGTACTGTTTAGATAATGTG+CGG | - | chr1_4:23783049-23783068 | Msa0156950:intron | 30.0% | |
| !! | CTTTTTCATTCTGGATTTGT+AGG | - | chr1_4:23783284-23783303 | Msa0156950:intron | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_4:23783365-23783384 | Msa0156950:intron | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_4:23783451-23783470 | None:intergenic | 30.0% | |
| CTCTTTCATTCTCATATTGT+AGG | - | chr1_4:23783752-23783771 | Msa0156950:CDS | 30.0% | |
| GGAAAACAATAATGTTTGGT+TGG | - | chr1_4:23783773-23783792 | Msa0156950:CDS | 30.0% | |
| AAACAATAATGTTTGGTTGG+GGG | - | chr1_4:23783776-23783795 | Msa0156950:CDS | 30.0% | |
| !! | GATTTGTTAAGTTGATCACT+TGG | + | chr1_4:23783820-23783839 | None:intergenic | 30.0% |
| ATGCTGATGATATTATGTCT+TGG | - | chr1_4:23783878-23783897 | Msa0156950:CDS | 30.0% | |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_4:23782232-23782251 | None:intergenic | 30.0% | |
| !! | TGTTGTGAATTTTGTTGTAG+AGG | + | chr1_4:23782293-23782312 | None:intergenic | 30.0% |
| TCAAGAATGGTGATATGATT+GGG | + | chr1_4:23782324-23782343 | None:intergenic | 30.0% | |
| TTCAAGAATGGTGATATGAT+TGG | + | chr1_4:23782325-23782344 | None:intergenic | 30.0% | |
| AAAGACAAGAAACAAATCCT+CGG | - | chr1_4:23782537-23782556 | Msa0156950:intron | 30.0% | |
| AATCATGCACCAAATAACTA+GGG | + | chr1_4:23782707-23782726 | None:intergenic | 30.0% | |
| AAATCATGCACCAAATAACT+AGG | + | chr1_4:23782708-23782727 | None:intergenic | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_4:23782803-23782822 | None:intergenic | 30.0% |
| AAGAACAACAAAATTCTTGC+AGG | + | chr1_4:23782887-23782906 | None:intergenic | 30.0% | |
| AGTACTGTTTAGATAATGTG+CGG | - | chr1_4:23783049-23783068 | Msa0156950:intron | 30.0% | |
| !! | CTTTTTCATTCTGGATTTGT+AGG | - | chr1_4:23783284-23783303 | Msa0156950:intron | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_4:23783365-23783384 | Msa0156950:intron | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_4:23783451-23783470 | None:intergenic | 30.0% | |
| CTCTTTCATTCTCATATTGT+AGG | - | chr1_4:23783752-23783771 | Msa0156950:CDS | 30.0% | |
| GGAAAACAATAATGTTTGGT+TGG | - | chr1_4:23783773-23783792 | Msa0156950:CDS | 30.0% | |
| AAACAATAATGTTTGGTTGG+GGG | - | chr1_4:23783776-23783795 | Msa0156950:CDS | 30.0% | |
| !! | GATTTGTTAAGTTGATCACT+TGG | + | chr1_4:23783820-23783839 | None:intergenic | 30.0% |
| ATGCTGATGATATTATGTCT+TGG | - | chr1_4:23783878-23783897 | Msa0156950:CDS | 30.0% | |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_4:23782233-23782252 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_4:23782230-23782249 | Msa0156950:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_4:23782264-23782283 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_4:23782265-23782284 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_4:23782365-23782384 | Msa0156950:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_4:23782445-23782464 | None:intergenic | 35.0% | |
| GATTGCTCATCAAAGAATTG+TGG | + | chr1_4:23782638-23782657 | None:intergenic | 35.0% | |
| TTCTTTGATGAGCAATCCTT+TGG | - | chr1_4:23782641-23782660 | Msa0156950:intron | 35.0% | |
| GAATCAAACGCTACAGATAT+TGG | + | chr1_4:23782680-23782699 | None:intergenic | 35.0% | |
| GATTCTTAGCCCTAGTTATT+TGG | - | chr1_4:23782695-23782714 | Msa0156950:intron | 35.0% | |
| AACAAAATTCTTGCAGGTTC+AGG | + | chr1_4:23782881-23782900 | None:intergenic | 35.0% | |
| CTAACTTCTGTCCATCAAAA+AGG | - | chr1_4:23783000-23783019 | Msa0156950:intron | 35.0% | |
| !!! | GGACCGTTTGATTTTTTTGT+TGG | + | chr1_4:23783339-23783358 | None:intergenic | 35.0% |
| AAAAAAATCAAACGGTCCTG+TGG | - | chr1_4:23783341-23783360 | Msa0156950:intron | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_4:23783360-23783379 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_4:23783414-23783433 | None:intergenic | 35.0% |
| AACAATAATGTTTGGTTGGG+GGG | - | chr1_4:23783777-23783796 | Msa0156950:CDS | 35.0% | |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_4:23782233-23782252 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_4:23782230-23782249 | Msa0156950:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_4:23782264-23782283 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_4:23782265-23782284 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_4:23782365-23782384 | Msa0156950:CDS | 35.0% | |
| AGTGGCAGATTTCTTCTTTA+AGG | + | chr1_4:23782445-23782464 | None:intergenic | 35.0% | |
| GATTGCTCATCAAAGAATTG+TGG | + | chr1_4:23782638-23782657 | None:intergenic | 35.0% | |
| TTCTTTGATGAGCAATCCTT+TGG | - | chr1_4:23782641-23782660 | Msa0156950:intron | 35.0% | |
| GAATCAAACGCTACAGATAT+TGG | + | chr1_4:23782680-23782699 | None:intergenic | 35.0% | |
| GATTCTTAGCCCTAGTTATT+TGG | - | chr1_4:23782695-23782714 | Msa0156950:intron | 35.0% | |
| AACAAAATTCTTGCAGGTTC+AGG | + | chr1_4:23782881-23782900 | None:intergenic | 35.0% | |
| CTAACTTCTGTCCATCAAAA+AGG | - | chr1_4:23783000-23783019 | Msa0156950:intron | 35.0% | |
| !!! | GGACCGTTTGATTTTTTTGT+TGG | + | chr1_4:23783339-23783358 | None:intergenic | 35.0% |
| AAAAAAATCAAACGGTCCTG+TGG | - | chr1_4:23783341-23783360 | Msa0156950:intron | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_4:23783360-23783379 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_4:23783414-23783433 | None:intergenic | 35.0% |
| AACAATAATGTTTGGTTGGG+GGG | - | chr1_4:23783777-23783796 | Msa0156950:CDS | 35.0% | |
| ATGGTGATATGATTGGGCAA+AGG | + | chr1_4:23782318-23782337 | None:intergenic | 40.0% | |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_4:23782364-23782383 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_4:23782364-23782383 | Msa0156950:CDS | 40.0% | |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_4:23782557-23782576 | None:intergenic | 40.0% |
| TGCTCATCAAAGAATTGTGG+AGG | + | chr1_4:23782635-23782654 | None:intergenic | 40.0% | |
| GCTACAGATATTGGAACCTA+GGG | + | chr1_4:23782671-23782690 | None:intergenic | 40.0% | |
| ACTTACAGGTACAGTGATTG+CGG | + | chr1_4:23782857-23782876 | None:intergenic | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_4:23783447-23783466 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_4:23783448-23783467 | None:intergenic | 40.0% | |
| ATGGTGATATGATTGGGCAA+AGG | + | chr1_4:23782318-23782337 | None:intergenic | 40.0% | |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_4:23782364-23782383 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_4:23782364-23782383 | Msa0156950:CDS | 40.0% | |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_4:23782557-23782576 | None:intergenic | 40.0% |
| TGCTCATCAAAGAATTGTGG+AGG | + | chr1_4:23782635-23782654 | None:intergenic | 40.0% | |
| GCTACAGATATTGGAACCTA+GGG | + | chr1_4:23782671-23782690 | None:intergenic | 40.0% | |
| ACTTACAGGTACAGTGATTG+CGG | + | chr1_4:23782857-23782876 | None:intergenic | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_4:23783447-23783466 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_4:23783448-23783467 | None:intergenic | 40.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_4:23782247-23782266 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_4:23782375-23782394 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+CGG | - | chr1_4:23782375-23782394 | Msa0156950:CDS | 45.0% | |
| ! | GTCTTTTCCTCGATACGAGT+AGG | + | chr1_4:23782406-23782425 | None:intergenic | 45.0% |
| ! | CACGATTGGACTTGGTAGAT+GGG | - | chr1_4:23782482-23782501 | Msa0156950:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_4:23782486-23782505 | Msa0156950:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_4:23782585-23782604 | Msa0156950:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_4:23782601-23782620 | None:intergenic | 45.0% | |
| CGCTACAGATATTGGAACCT+AGG | + | chr1_4:23782672-23782691 | None:intergenic | 45.0% | |
| AGATAAACCACCGTAGTTCC+AGG | - | chr1_4:23782826-23782845 | Msa0156950:intron | 45.0% | |
| TTGCAGGTTCAGGAACTTAC+AGG | + | chr1_4:23782871-23782890 | None:intergenic | 45.0% | |
| ! | TGCGGATTATGAACTGTGCT+AGG | - | chr1_4:23783067-23783086 | Msa0156950:intron | 45.0% |
| ! | GCGGATTATGAACTGTGCTA+GGG | - | chr1_4:23783068-23783087 | Msa0156950:intron | 45.0% |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_4:23783904-23783923 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_4:23783919-23783938 | Msa0156950:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_4:23783936-23783955 | Msa0156950:CDS | 45.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_4:23782247-23782266 | None:intergenic | 45.0% | |
| AACTCTTCCCAAATCTCCCA+TGG | + | chr1_4:23782375-23782394 | None:intergenic | 45.0% | |
| TGGGAGATTTGGGAAGAGTT+CGG | - | chr1_4:23782375-23782394 | Msa0156950:CDS | 45.0% | |
| ! | GTCTTTTCCTCGATACGAGT+AGG | + | chr1_4:23782406-23782425 | None:intergenic | 45.0% |
| ! | CACGATTGGACTTGGTAGAT+GGG | - | chr1_4:23782482-23782501 | Msa0156950:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_4:23782486-23782505 | Msa0156950:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_4:23782585-23782604 | Msa0156950:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_4:23782601-23782620 | None:intergenic | 45.0% | |
| CGCTACAGATATTGGAACCT+AGG | + | chr1_4:23782672-23782691 | None:intergenic | 45.0% | |
| AGATAAACCACCGTAGTTCC+AGG | - | chr1_4:23782826-23782845 | Msa0156950:intron | 45.0% | |
| TTGCAGGTTCAGGAACTTAC+AGG | + | chr1_4:23782871-23782890 | None:intergenic | 45.0% | |
| ! | TGCGGATTATGAACTGTGCT+AGG | - | chr1_4:23783067-23783086 | Msa0156950:intron | 45.0% |
| ! | GCGGATTATGAACTGTGCTA+GGG | - | chr1_4:23783068-23783087 | Msa0156950:intron | 45.0% |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_4:23783904-23783923 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_4:23783919-23783938 | Msa0156950:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_4:23783936-23783955 | Msa0156950:CDS | 45.0% | |
| GGAACTTCCTACTCGTATCG+AGG | - | chr1_4:23782396-23782415 | Msa0156950:CDS | 50.0% | |
| GTAGTTCGCACGATTGGACT+TGG | - | chr1_4:23782474-23782493 | Msa0156950:intron | 50.0% | |
| ! | GCACGATTGGACTTGGTAGA+TGG | - | chr1_4:23782481-23782500 | Msa0156950:intron | 50.0% |
| AGATGGGAAGGTGAAGATGC+TGG | - | chr1_4:23782498-23782517 | Msa0156950:intron | 50.0% | |
| GATGGGAAGGTGAAGATGCT+GGG | - | chr1_4:23782499-23782518 | Msa0156950:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_4:23782588-23782607 | Msa0156950:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_4:23782592-23782611 | Msa0156950:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_4:23782602-23782621 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_4:23782652-23782671 | Msa0156950:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_4:23782660-23782679 | None:intergenic | 50.0% | |
| GGAACTTCCTACTCGTATCG+AGG | - | chr1_4:23782396-23782415 | Msa0156950:CDS | 50.0% | |
| GTAGTTCGCACGATTGGACT+TGG | - | chr1_4:23782474-23782493 | Msa0156950:intron | 50.0% | |
| ! | GCACGATTGGACTTGGTAGA+TGG | - | chr1_4:23782481-23782500 | Msa0156950:intron | 50.0% |
| AGATGGGAAGGTGAAGATGC+TGG | - | chr1_4:23782498-23782517 | Msa0156950:intron | 50.0% | |
| GATGGGAAGGTGAAGATGCT+GGG | - | chr1_4:23782499-23782518 | Msa0156950:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_4:23782588-23782607 | Msa0156950:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_4:23782592-23782611 | Msa0156950:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_4:23782602-23782621 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_4:23782652-23782671 | Msa0156950:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_4:23782660-23782679 | None:intergenic | 50.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_4:23782355-23782374 | Msa0156950:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_4:23782356-23782375 | Msa0156950:CDS | 55.0% | |
| TCACGCGTAGTTCGCACGAT+TGG | - | chr1_4:23782468-23782487 | Msa0156950:intron | 55.0% | |
| ACAGGTACAGTGATTGCGGC+AGG | + | chr1_4:23782853-23782872 | None:intergenic | 55.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_4:23782355-23782374 | Msa0156950:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_4:23782356-23782375 | Msa0156950:CDS | 55.0% | |
| TCACGCGTAGTTCGCACGAT+TGG | - | chr1_4:23782468-23782487 | Msa0156950:intron | 55.0% | |
| ACAGGTACAGTGATTGCGGC+AGG | + | chr1_4:23782853-23782872 | None:intergenic | 55.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_4:23782463-23782482 | None:intergenic | 60.0% | |
| TGCGGCAGGTCCTGGAACTA+CGG | + | chr1_4:23782839-23782858 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+TGG | + | chr1_4:23782847-23782866 | None:intergenic | 60.0% | |
| GCGAACTACGCGTGAGCTAG+TGG | + | chr1_4:23782463-23782482 | None:intergenic | 60.0% | |
| TGCGGCAGGTCCTGGAACTA+CGG | + | chr1_4:23782839-23782858 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+TGG | + | chr1_4:23782847-23782866 | None:intergenic | 60.0% | |
| GGCAGGTCCTGGAACTACGG+TGG | + | chr1_4:23782836-23782855 | None:intergenic | 65.0% | |
| GGCAGGTCCTGGAACTACGG+TGG | + | chr1_4:23782836-23782855 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 23782225 | 23784026 | 23782225 | ID=Msa0156950;Name=Msa0156950 |
| chr1_4 | mRNA | 23782225 | 23784026 | 23782225 | ID=Msa0156950-mRNA-1;Parent=Msa0156950;Name=Msa0156950-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|258 |
| chr1_4 | exon | 23783589 | 23784026 | 23783589 | ID=Msa0156950-mRNA-1:exon:8278;Parent=Msa0156950-mRNA-1 |
| chr1_4 | exon | 23783414 | 23783499 | 23783414 | ID=Msa0156950-mRNA-1:exon:8277;Parent=Msa0156950-mRNA-1 |
| chr1_4 | exon | 23782225 | 23782477 | 23782225 | ID=Msa0156950-mRNA-1:exon:8276;Parent=Msa0156950-mRNA-1 |
| chr1_4 | CDS | 23783589 | 23784026 | 23783589 | ID=Msa0156950-mRNA-1:cds;Parent=Msa0156950-mRNA-1 |
| chr1_4 | CDS | 23783414 | 23783499 | 23783414 | ID=Msa0156950-mRNA-1:cds;Parent=Msa0156950-mRNA-1 |
| chr1_4 | CDS | 23782225 | 23782477 | 23782225 | ID=Msa0156950-mRNA-1:cds;Parent=Msa0156950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
