Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156980 | XP_003590172.1 | 89.231 | 325 | 29 | 1 | 1 | 319 | 1 | 325 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156980 | sp|Q9FY93|NAC83_ARATH | 34.932 | 146 | 80 | 6 | 13 | 154 | 22 | 156 | 5.86e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156980 | G7I6N9 | 89.231 | 325 | 29 | 1 | 1 | 319 | 1 | 325 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0156980 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156980 | MtrunA17_Chr1g0168571 | 89.231 | 325 | 29 | 1 | 1 | 319 | 1 | 325 | 0.0 | 585 |
| Msa0156980 | MtrunA17_Chr1g0174911 | 54.930 | 355 | 90 | 11 | 1 | 318 | 1 | 322 | 9.19e-110 | 322 |
| Msa0156980 | MtrunA17_Chr7g0274971 | 62.051 | 195 | 62 | 1 | 1 | 183 | 1 | 195 | 1.33e-81 | 246 |
| Msa0156980 | MtrunA17_Chr7g0214071 | 33.333 | 144 | 84 | 4 | 13 | 154 | 23 | 156 | 1.24e-15 | 75.5 |
| Msa0156980 | MtrunA17_Chr7g0263931 | 33.548 | 155 | 84 | 6 | 13 | 157 | 19 | 164 | 1.34e-15 | 76.3 |
| Msa0156980 | MtrunA17_Chr3g0139331 | 26.901 | 171 | 115 | 5 | 13 | 180 | 19 | 182 | 2.99e-11 | 63.5 |
| Msa0156980 | MtrunA17_Chr5g0398971 | 32.886 | 149 | 91 | 7 | 13 | 157 | 15 | 158 | 4.07e-11 | 63.2 |
| Msa0156980 | MtrunA17_Chr1g0200561 | 30.405 | 148 | 94 | 6 | 13 | 157 | 27 | 168 | 5.71e-11 | 62.8 |
| Msa0156980 | MtrunA17_Chr8g0384721 | 34.667 | 150 | 80 | 6 | 13 | 154 | 15 | 154 | 7.44e-11 | 62.0 |
| Msa0156980 | MtrunA17_Chr3g0109821 | 31.613 | 155 | 90 | 7 | 13 | 160 | 14 | 159 | 9.66e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156980 | AT5G13180.1 | 34.932 | 146 | 80 | 6 | 13 | 154 | 22 | 156 | 5.95e-14 | 70.9 |
| Msa0156980 | AT5G62380.2 | 31.373 | 153 | 96 | 6 | 13 | 162 | 15 | 161 | 1.83e-13 | 70.5 |
| Msa0156980 | AT5G62380.1 | 31.373 | 153 | 96 | 6 | 13 | 162 | 15 | 161 | 1.83e-13 | 70.5 |
| Msa0156980 | AT2G24430.2 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 4.66e-13 | 69.3 |
| Msa0156980 | AT2G24430.1 | 31.081 | 148 | 92 | 5 | 13 | 157 | 24 | 164 | 4.66e-13 | 69.3 |
| Msa0156980 | AT3G10480.2 | 33.758 | 157 | 90 | 9 | 13 | 163 | 35 | 183 | 5.06e-13 | 69.7 |
| Msa0156980 | AT5G08790.1 | 32.620 | 187 | 103 | 8 | 3 | 179 | 5 | 178 | 2.11e-12 | 67.0 |
| Msa0156980 | AT3G10480.1 | 33.544 | 158 | 90 | 9 | 13 | 163 | 35 | 184 | 3.26e-12 | 67.4 |
| Msa0156980 | AT5G63790.1 | 33.540 | 161 | 88 | 6 | 3 | 154 | 48 | 198 | 1.23e-11 | 65.1 |
| Msa0156980 | AT5G63790.2 | 33.540 | 161 | 88 | 6 | 3 | 154 | 58 | 208 | 1.37e-11 | 64.7 |
| Msa0156980 | AT1G56010.2 | 30.769 | 156 | 88 | 9 | 13 | 158 | 27 | 172 | 3.08e-11 | 63.9 |
| Msa0156980 | AT5G66300.1 | 29.747 | 158 | 102 | 6 | 13 | 167 | 20 | 171 | 3.09e-11 | 63.5 |
| Msa0156980 | AT1G77450.1 | 33.333 | 150 | 83 | 7 | 13 | 155 | 18 | 157 | 4.68e-11 | 62.8 |
| Msa0156980 | AT3G17730.1 | 30.061 | 163 | 100 | 8 | 13 | 168 | 14 | 169 | 6.00e-11 | 62.0 |
| Msa0156980 | AT1G69490.1 | 32.258 | 155 | 84 | 7 | 13 | 157 | 17 | 160 | 9.62e-11 | 62.0 |
Find 64 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAGCAGATTTCTTCTTTA+AGG | 0.123640 | 1_4:+23819092 | None:intergenic |
| CCTCAATTCTTCTTCCAATA+AGG | 0.222490 | 1_4:-23819304 | Msa0156980:CDS |
| TTCAAGAATGGTGATATTAT+TGG | 0.230700 | 1_4:+23819212 | None:intergenic |
| TGGGAGATTTGGGAAGAATT+TGG | 0.235579 | 1_4:-23819159 | Msa0156980:CDS |
| CAAAGAATCCATGGGAGATT+TGG | 0.252767 | 1_4:-23819170 | Msa0156980:CDS |
| TCTGCATAGAACATAATTAT+TGG | 0.253885 | 1_4:+23818764 | None:intergenic |
| TAAGTTGATTACTTGGATTT+TGG | 0.305325 | 1_4:+23817745 | None:intergenic |
| GCACTATTGGACTTGGTAGA+TGG | 0.308744 | 1_4:-23819053 | Msa0156980:CDS |
| CCAGGAACGATTGTCATTCT+TGG | 0.309932 | 1_4:+23818684 | None:intergenic |
| TCAAGAATGGTGATATTATT+GGG | 0.331273 | 1_4:+23819213 | None:intergenic |
| GCAAGAACAAAGTTCTCTTT+TGG | 0.336878 | 1_4:+23818124 | None:intergenic |
| TAAAACTGATTGGAAATCAT+TGG | 0.339556 | 1_4:+23817594 | None:intergenic |
| CCATTGTTAAGTTGATTACT+TGG | 0.345697 | 1_4:+23817738 | None:intergenic |
| AGTGGGTGCGATAACCTTAT+TGG | 0.366373 | 1_4:+23819290 | None:intergenic |
| ATATGTAGCACTTACAGATT+TGG | 0.368326 | 1_4:+23818087 | None:intergenic |
| AAAGAATCCATGGGAGATTT+GGG | 0.379921 | 1_4:-23819169 | Msa0156980:CDS |
| TCACGCGTAGTTCGCACTAT+TGG | 0.388612 | 1_4:-23819066 | Msa0156980:CDS |
| TATAGGAGTACAATAATGTT+TGG | 0.388726 | 1_4:-23817785 | Msa0156980:intron |
| GAGTACAATAATGTTTGGTT+GGG | 0.392823 | 1_4:-23817780 | Msa0156980:CDS |
| TTCTTTGATAAGCAATCCTT+TGG | 0.396079 | 1_4:-23818893 | Msa0156980:intron |
| CCAAGAATGACAATCGTTCC+TGG | 0.400269 | 1_4:-23818684 | Msa0156980:CDS |
| GGATTTGGTTCTTGTCTTTG+CGG | 0.414473 | 1_4:+23819001 | None:intergenic |
| GGAGTACAATAATGTTTGGT+TGG | 0.416706 | 1_4:-23817781 | Msa0156980:CDS |
| TTAAGGTTGTAAAGAAGTAT+AGG | 0.426160 | 1_4:+23819109 | None:intergenic |
| GCAAGATCCATCCACCATCT+TGG | 0.430936 | 1_4:+23818935 | None:intergenic |
| CAAGATCCATCCACCATCTT+GGG | 0.431083 | 1_4:+23818936 | None:intergenic |
| ATTCTTGAATACGATTTGTT+CGG | 0.433061 | 1_4:-23819198 | Msa0156980:CDS |
| TAAGTCCTTATAAAACTGAT+TGG | 0.443750 | 1_4:+23817584 | None:intergenic |
| ACAGTGATTGCGGCAGGTCC+AGG | 0.448826 | 1_4:+23818666 | None:intergenic |
| CTTATTGGAAGAAGAATTGA+GGG | 0.451784 | 1_4:+23819305 | None:intergenic |
| CACTATTGGACTTGGTAGAT+GGG | 0.484248 | 1_4:-23819052 | Msa0156980:CDS |
| AATCTCCCATGGATTCTTTG+CGG | 0.489258 | 1_4:+23819173 | None:intergenic |
| AGTACAATAATGTTTGGTTG+GGG | 0.510246 | 1_4:-23817779 | Msa0156980:CDS |
| CCTTATTGGAAGAAGAATTG+AGG | 0.526520 | 1_4:+23819304 | None:intergenic |
| GAACAAATCGTATTCAAGAA+TGG | 0.535727 | 1_4:+23819200 | None:intergenic |
| AATTCTTCCCAAATCTCCCA+TGG | 0.537118 | 1_4:+23819162 | None:intergenic |
| TGAGACTTTGTATTAACCAC+AGG | 0.541279 | 1_4:+23818178 | None:intergenic |
| TGTAGCACTTACAGATTTGG+TGG | 0.543882 | 1_4:+23818090 | None:intergenic |
| TCGGCACCGCAAAGAATCCA+TGG | 0.544845 | 1_4:-23819179 | Msa0156980:CDS |
| ATGGTGATATTATTGGGCAA+AGG | 0.553419 | 1_4:+23819219 | None:intergenic |
| GATTGCTTATCAAAGAATTG+TGG | 0.559456 | 1_4:+23818899 | None:intergenic |
| AAGAGTGACACTTCCCAAGA+TGG | 0.562341 | 1_4:-23818949 | Msa0156980:CDS |
| TTGTAGAAGTTCATCATCAG+TGG | 0.566028 | 1_4:+23819272 | None:intergenic |
| TAATACAAAGTCTCAACGTA+AGG | 0.571382 | 1_4:-23818170 | Msa0156980:CDS |
| ACACTTCCCAAGATGGTGGA+TGG | 0.575047 | 1_4:-23818942 | Msa0156980:CDS |
| ATGATGATGCTAGTATGTCT+TGG | 0.583925 | 1_4:-23817683 | Msa0156980:CDS |
| TGCTTATCAAAGAATTGTGG+AGG | 0.589131 | 1_4:+23818902 | None:intergenic |
| ACAAGTACAGTGATTGCGGC+AGG | 0.590813 | 1_4:+23818660 | None:intergenic |
| CCAAGTAATCAACTTAACAA+TGG | 0.597996 | 1_4:-23817738 | Msa0156980:CDS |
| ATTGGACTTGGTAGATGGGA+AGG | 0.599219 | 1_4:-23819048 | Msa0156980:CDS |
| AGCTGCAACGAAAACAACTC+AGG | 0.602909 | 1_4:+23817660 | None:intergenic |
| AAAGACAAGAACCAAATCCT+CGG | 0.605189 | 1_4:-23818997 | Msa0156980:CDS |
| GTAGTTCGCACTATTGGACT+TGG | 0.612695 | 1_4:-23819060 | Msa0156980:CDS |
| TGAAGGATGCTTGATCGAAG+AGG | 0.615586 | 1_4:-23817625 | Msa0156980:CDS |
| TGTAGAAGTTCATCATCAGT+GGG | 0.615614 | 1_4:+23819273 | None:intergenic |
| CAGCTGAGAGAGATGAATGA+AGG | 0.618301 | 1_4:-23817642 | Msa0156980:CDS |
| CGGCACCGCAAAGAATCCAT+GGG | 0.621679 | 1_4:-23819178 | Msa0156980:CDS |
| AGATGGGAAGGTGAAGACGC+TGG | 0.631377 | 1_4:-23819036 | Msa0156980:CDS |
| AGTGACACTTCCCAAGATGG+TGG | 0.639769 | 1_4:-23818946 | Msa0156980:CDS |
| GGAGCTTCTCACTCATATCG+TGG | 0.640997 | 1_4:-23819138 | Msa0156980:CDS |
| GTAGCACTTACAGATTTGGT+GGG | 0.644008 | 1_4:+23818091 | None:intergenic |
| ACTTACAAGTACAGTGATTG+CGG | 0.645359 | 1_4:+23818656 | None:intergenic |
| GTACAATAATGTTTGGTTGG+GGG | 0.656762 | 1_4:-23817778 | Msa0156980:CDS |
| AAAAGAATCAAACTGTCCTG+TGG | 0.676178 | 1_4:-23818194 | Msa0156980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_4:23818041-23818060 | Msa0156980:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_4:23818042-23818061 | Msa0156980:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_4:23818299-23818318 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_4:23818379-23818398 | None:intergenic | 15.0% |
| !!! | ATACAATATAGATTTTTTCT+TGG | - | chr1_4:23818041-23818060 | Msa0156980:intron | 15.0% |
| !!! | TACAATATAGATTTTTTCTT+GGG | - | chr1_4:23818042-23818061 | Msa0156980:intron | 15.0% |
| !!! | ATAAAATCTAATCTTTTTAC+TGG | + | chr1_4:23818299-23818318 | None:intergenic | 15.0% |
| !! | AATATTTCAAGAAGATAAAA+AGG | + | chr1_4:23818379-23818398 | None:intergenic | 15.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1_4:23817625-23817644 | None:intergenic | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_4:23818025-23818044 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_4:23818026-23818045 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_4:23818068-23818087 | Msa0156980:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_4:23818453-23818472 | Msa0156980:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_4:23818529-23818548 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_4:23818606-23818625 | Msa0156980:intron | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_4:23818714-23818733 | Msa0156980:CDS | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_4:23818719-23818738 | Msa0156980:CDS | 20.0% |
| !!! | TGTTATGAATTTTATTGTAG+AGG | + | chr1_4:23817625-23817644 | None:intergenic | 20.0% |
| !! | GTATATTTGCAAAAAAACTA+GGG | + | chr1_4:23818025-23818044 | None:intergenic | 20.0% |
| !! | TGTATATTTGCAAAAAAACT+AGG | + | chr1_4:23818026-23818045 | None:intergenic | 20.0% |
| !!! | TTATGATTTGATTTTGTATC+TGG | - | chr1_4:23818068-23818087 | Msa0156980:intron | 20.0% |
| !!! | TTTGATGCAAATTATTTCTT+TGG | - | chr1_4:23818453-23818472 | Msa0156980:intron | 20.0% |
| !! | GAGTAGTAAATCATTAAAAT+AGG | + | chr1_4:23818529-23818548 | None:intergenic | 20.0% |
| !!! | TAACATTGTTCTTTTTCATT+TGG | - | chr1_4:23818606-23818625 | Msa0156980:intron | 20.0% |
| !! | TAAGGAAAAAGAAAAATATG+TGG | - | chr1_4:23818714-23818733 | Msa0156980:CDS | 20.0% |
| !! | AAAAAGAAAAATATGTGGAA+TGG | - | chr1_4:23818719-23818738 | Msa0156980:CDS | 20.0% |
| ! | TCAAGAATGGTGATATTATT+GGG | + | chr1_4:23817656-23817675 | None:intergenic | 25.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1_4:23817657-23817676 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_4:23817668-23817687 | Msa0156980:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_4:23817760-23817779 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_4:23818105-23818124 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_4:23818414-23818433 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_4:23818615-23818634 | Msa0156980:intron | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_4:23818616-23818635 | Msa0156980:intron | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_4:23819054-23819073 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_4:23819064-23819083 | Msa0156980:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1_4:23819081-23819100 | Msa0156980:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_4:23819124-23819143 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_4:23819152-23819171 | Msa0156980:CDS | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1_4:23819275-23819294 | None:intergenic | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1_4:23819277-23819296 | Msa0156980:CDS | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1_4:23819285-23819304 | None:intergenic | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1_4:23819289-23819308 | Msa0156980:CDS | 25.0% |
| ! | TCAAGAATGGTGATATTATT+GGG | + | chr1_4:23817656-23817675 | None:intergenic | 25.0% |
| ! | TTCAAGAATGGTGATATTAT+TGG | + | chr1_4:23817657-23817676 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+CGG | - | chr1_4:23817668-23817687 | Msa0156980:CDS | 25.0% |
| !! | TTAAGGTTGTAAAGAAGTAT+AGG | + | chr1_4:23817760-23817779 | None:intergenic | 25.0% |
| ! | TCTGCATAGAACATAATTAT+TGG | + | chr1_4:23818105-23818124 | None:intergenic | 25.0% |
| ! | AATCACATGCTTAATTGATT+AGG | + | chr1_4:23818414-23818433 | None:intergenic | 25.0% |
| !!! | TCTTTTTCATTTGGATTTGT+AGG | - | chr1_4:23818615-23818634 | Msa0156980:intron | 25.0% |
| !!! | CTTTTTCATTTGGATTTGTA+GGG | - | chr1_4:23818616-23818635 | Msa0156980:intron | 25.0% |
| !! | AATGAAAGAGCACAATAATA+AGG | + | chr1_4:23819054-23819073 | None:intergenic | 25.0% |
| ! | CTCTTTCATTCTCATATTAT+AGG | - | chr1_4:23819064-23819083 | Msa0156980:CDS | 25.0% |
| !! | TATAGGAGTACAATAATGTT+TGG | - | chr1_4:23819081-23819100 | Msa0156980:CDS | 25.0% |
| !!! | TAAGTTGATTACTTGGATTT+TGG | + | chr1_4:23819124-23819143 | None:intergenic | 25.0% |
| ! | AAAAACAAGATTGAAGTAGA+TGG | - | chr1_4:23819152-23819171 | Msa0156980:CDS | 25.0% |
| ! | TAAAACTGATTGGAAATCAT+TGG | + | chr1_4:23819275-23819294 | None:intergenic | 25.0% |
| !!! | GATTTCCAATCAGTTTTATA+AGG | - | chr1_4:23819277-23819296 | Msa0156980:CDS | 25.0% |
| ! | TAAGTCCTTATAAAACTGAT+TGG | + | chr1_4:23819285-23819304 | None:intergenic | 25.0% |
| !! | GTTTTATAAGGACTTATTGT+TGG | - | chr1_4:23819289-23819308 | Msa0156980:CDS | 25.0% |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_4:23817564-23817583 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_4:23817669-23817688 | None:intergenic | 30.0% | |
| AGTAGCAGATTTCTTCTTTA+AGG | + | chr1_4:23817777-23817796 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_4:23817970-23817989 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_4:23817973-23817992 | Msa0156980:intron | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_4:23818152-23818171 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_4:23818696-23818715 | Msa0156980:CDS | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_4:23818782-23818801 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1_4:23819086-23819105 | Msa0156980:CDS | 30.0% | |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1_4:23819087-23819106 | Msa0156980:CDS | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_4:23819131-23819150 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_4:23819128-23819147 | Msa0156980:CDS | 30.0% | |
| CTTATTGGAAGAAGAATTGA+GGG | + | chr1_4:23817564-23817583 | None:intergenic | 30.0% | |
| GAACAAATCGTATTCAAGAA+TGG | + | chr1_4:23817669-23817688 | None:intergenic | 30.0% | |
| AGTAGCAGATTTCTTCTTTA+AGG | + | chr1_4:23817777-23817796 | None:intergenic | 30.0% | |
| GATTGCTTATCAAAGAATTG+TGG | + | chr1_4:23817970-23817989 | None:intergenic | 30.0% | |
| TTCTTTGATAAGCAATCCTT+TGG | - | chr1_4:23817973-23817992 | Msa0156980:intron | 30.0% | |
| !! | GCAACAATATTTTTGCTTAC+AGG | + | chr1_4:23818152-23818171 | None:intergenic | 30.0% |
| TAATACAAAGTCTCAACGTA+AGG | - | chr1_4:23818696-23818715 | Msa0156980:CDS | 30.0% | |
| ATATGTAGCACTTACAGATT+TGG | + | chr1_4:23818782-23818801 | None:intergenic | 30.0% | |
| GAGTACAATAATGTTTGGTT+GGG | - | chr1_4:23819086-23819105 | Msa0156980:CDS | 30.0% | |
| AGTACAATAATGTTTGGTTG+GGG | - | chr1_4:23819087-23819106 | Msa0156980:CDS | 30.0% | |
| !! | CCATTGTTAAGTTGATTACT+TGG | + | chr1_4:23819131-23819150 | None:intergenic | 30.0% |
| CCAAGTAATCAACTTAACAA+TGG | - | chr1_4:23819128-23819147 | Msa0156980:CDS | 30.0% | |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_4:23817565-23817584 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_4:23817562-23817581 | Msa0156980:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_4:23817596-23817615 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_4:23817597-23817616 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGGCAA+AGG | + | chr1_4:23817650-23817669 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_4:23817697-23817716 | Msa0156980:CDS | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_4:23817869-23817888 | Msa0156980:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_4:23817967-23817986 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_4:23818012-23818031 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_4:23818079-23818098 | Msa0156980:intron | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_4:23818213-23818232 | None:intergenic | 35.0% | |
| ! | ACCCTAAACACAGTGTTTTA+CGG | + | chr1_4:23818341-23818360 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_4:23818670-23818689 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_4:23818672-23818691 | Msa0156980:CDS | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_4:23818691-23818710 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_4:23818745-23818764 | None:intergenic | 35.0% |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1_4:23819085-23819104 | Msa0156980:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1_4:23819088-23819107 | Msa0156980:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_4:23819183-23819202 | Msa0156980:CDS | 35.0% |
| CCTTATTGGAAGAAGAATTG+AGG | + | chr1_4:23817565-23817584 | None:intergenic | 35.0% | |
| CCTCAATTCTTCTTCCAATA+AGG | - | chr1_4:23817562-23817581 | Msa0156980:CDS | 35.0% | |
| TGTAGAAGTTCATCATCAGT+GGG | + | chr1_4:23817596-23817615 | None:intergenic | 35.0% | |
| TTGTAGAAGTTCATCATCAG+TGG | + | chr1_4:23817597-23817616 | None:intergenic | 35.0% | |
| ATGGTGATATTATTGGGCAA+AGG | + | chr1_4:23817650-23817669 | None:intergenic | 35.0% | |
| AAAGAATCCATGGGAGATTT+GGG | - | chr1_4:23817697-23817716 | Msa0156980:CDS | 35.0% | |
| AAAGACAAGAACCAAATCCT+CGG | - | chr1_4:23817869-23817888 | Msa0156980:intron | 35.0% | |
| TGCTTATCAAAGAATTGTGG+AGG | + | chr1_4:23817967-23817986 | None:intergenic | 35.0% | |
| AAAACTAGGGCTACAAATCT+TGG | + | chr1_4:23818012-23818031 | None:intergenic | 35.0% | |
| !! | TTTTGTATCTGGTTTCTTGC+AGG | - | chr1_4:23818079-23818098 | Msa0156980:intron | 35.0% |
| ACTTACAAGTACAGTGATTG+CGG | + | chr1_4:23818213-23818232 | None:intergenic | 35.0% | |
| ! | ACCCTAAACACAGTGTTTTA+CGG | + | chr1_4:23818341-23818360 | None:intergenic | 35.0% |
| ! | GGACAGTTTGATTCTTTTGT+TGG | + | chr1_4:23818670-23818689 | None:intergenic | 35.0% |
| AAAAGAATCAAACTGTCCTG+TGG | - | chr1_4:23818672-23818691 | Msa0156980:CDS | 35.0% | |
| TGAGACTTTGTATTAACCAC+AGG | + | chr1_4:23818691-23818710 | None:intergenic | 35.0% | |
| ! | GCAAGAACAAAGTTCTCTTT+TGG | + | chr1_4:23818745-23818764 | None:intergenic | 35.0% |
| GGAGTACAATAATGTTTGGT+TGG | - | chr1_4:23819085-23819104 | Msa0156980:CDS | 35.0% | |
| GTACAATAATGTTTGGTTGG+GGG | - | chr1_4:23819088-23819107 | Msa0156980:CDS | 35.0% | |
| ! | ATGATGATGCTAGTATGTCT+TGG | - | chr1_4:23819183-23819202 | Msa0156980:CDS | 35.0% |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_4:23817696-23817715 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_4:23817696-23817715 | Msa0156980:CDS | 40.0% | |
| AATTCTTCCCAAATCTCCCA+TGG | + | chr1_4:23817707-23817726 | None:intergenic | 40.0% | |
| TGGGAGATTTGGGAAGAATT+TGG | - | chr1_4:23817707-23817726 | Msa0156980:CDS | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_4:23817814-23817833 | Msa0156980:intron | 40.0% |
| !! | GGATTTGGTTCTTGTCTTTG+CGG | + | chr1_4:23817868-23817887 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_4:23817883-23817902 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_4:23817889-23817908 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_4:23818003-23818022 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_4:23818243-23818262 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_4:23818240-23818259 | Msa0156980:intron | 40.0% | |
| TCCCGTAAAACACTGTGTTT+AGG | - | chr1_4:23818336-23818355 | Msa0156980:intron | 40.0% | |
| ! | CCCTAAACACAGTGTTTTAC+GGG | + | chr1_4:23818340-23818359 | None:intergenic | 40.0% |
| CCCGTAAAACACTGTGTTTA+GGG | - | chr1_4:23818337-23818356 | Msa0156980:intron | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_4:23818778-23818797 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_4:23818779-23818798 | None:intergenic | 40.0% | |
| AATCTCCCATGGATTCTTTG+CGG | + | chr1_4:23817696-23817715 | None:intergenic | 40.0% | |
| CAAAGAATCCATGGGAGATT+TGG | - | chr1_4:23817696-23817715 | Msa0156980:CDS | 40.0% | |
| AATTCTTCCCAAATCTCCCA+TGG | + | chr1_4:23817707-23817726 | None:intergenic | 40.0% | |
| TGGGAGATTTGGGAAGAATT+TGG | - | chr1_4:23817707-23817726 | Msa0156980:CDS | 40.0% | |
| ! | CACTATTGGACTTGGTAGAT+GGG | - | chr1_4:23817814-23817833 | Msa0156980:intron | 40.0% |
| !! | GGATTTGGTTCTTGTCTTTG+CGG | + | chr1_4:23817868-23817887 | None:intergenic | 40.0% |
| !!! | GTTTTTTCATGCCGAGGATT+TGG | + | chr1_4:23817883-23817902 | None:intergenic | 40.0% |
| !!! | GAAAACGTTTTTTCATGCCG+AGG | + | chr1_4:23817889-23817908 | None:intergenic | 40.0% |
| GCTACAAATCTTGGAACCTA+GGG | + | chr1_4:23818003-23818022 | None:intergenic | 40.0% | |
| CCAAAGCATAACATTCTTGC+AGG | + | chr1_4:23818243-23818262 | None:intergenic | 40.0% | |
| CCTGCAAGAATGTTATGCTT+TGG | - | chr1_4:23818240-23818259 | Msa0156980:intron | 40.0% | |
| TCCCGTAAAACACTGTGTTT+AGG | - | chr1_4:23818336-23818355 | Msa0156980:intron | 40.0% | |
| ! | CCCTAAACACAGTGTTTTAC+GGG | + | chr1_4:23818340-23818359 | None:intergenic | 40.0% |
| CCCGTAAAACACTGTGTTTA+GGG | - | chr1_4:23818337-23818356 | Msa0156980:intron | 40.0% | |
| ! | GTAGCACTTACAGATTTGGT+GGG | + | chr1_4:23818778-23818797 | None:intergenic | 40.0% |
| TGTAGCACTTACAGATTTGG+TGG | + | chr1_4:23818779-23818798 | None:intergenic | 40.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_4:23817579-23817598 | None:intergenic | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_4:23817806-23817825 | Msa0156980:intron | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_4:23817813-23817832 | Msa0156980:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_4:23817818-23817837 | Msa0156980:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_4:23817917-23817936 | Msa0156980:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_4:23817933-23817952 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_4:23818004-23818023 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_4:23818185-23818204 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_4:23818182-23818201 | Msa0156980:CDS | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_4:23819209-23819228 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_4:23819224-23819243 | Msa0156980:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_4:23819241-23819260 | Msa0156980:CDS | 45.0% | |
| AGTGGGTGCGATAACCTTAT+TGG | + | chr1_4:23817579-23817598 | None:intergenic | 45.0% | |
| GTAGTTCGCACTATTGGACT+TGG | - | chr1_4:23817806-23817825 | Msa0156980:intron | 45.0% | |
| ! | GCACTATTGGACTTGGTAGA+TGG | - | chr1_4:23817813-23817832 | Msa0156980:intron | 45.0% |
| ! | ATTGGACTTGGTAGATGGGA+AGG | - | chr1_4:23817818-23817837 | Msa0156980:intron | 45.0% |
| AAGAGTGACACTTCCCAAGA+TGG | - | chr1_4:23817917-23817936 | Msa0156980:intron | 45.0% | |
| CAAGATCCATCCACCATCTT+GGG | + | chr1_4:23817933-23817952 | None:intergenic | 45.0% | |
| GGCTACAAATCTTGGAACCT+AGG | + | chr1_4:23818004-23818023 | None:intergenic | 45.0% | |
| CCAGGAACGATTGTCATTCT+TGG | + | chr1_4:23818185-23818204 | None:intergenic | 45.0% | |
| CCAAGAATGACAATCGTTCC+TGG | - | chr1_4:23818182-23818201 | Msa0156980:CDS | 45.0% | |
| AGCTGCAACGAAAACAACTC+AGG | + | chr1_4:23819209-23819228 | None:intergenic | 45.0% | |
| CAGCTGAGAGAGATGAATGA+AGG | - | chr1_4:23819224-23819243 | Msa0156980:CDS | 45.0% | |
| TGAAGGATGCTTGATCGAAG+AGG | - | chr1_4:23819241-23819260 | Msa0156980:CDS | 45.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1_4:23817728-23817747 | Msa0156980:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1_4:23817800-23817819 | Msa0156980:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_4:23817920-23817939 | Msa0156980:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_4:23817924-23817943 | Msa0156980:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_4:23817934-23817953 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_4:23817984-23818003 | Msa0156980:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_4:23817992-23818011 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_4:23818209-23818228 | None:intergenic | 50.0% | |
| GGAGCTTCTCACTCATATCG+TGG | - | chr1_4:23817728-23817747 | Msa0156980:CDS | 50.0% | |
| TCACGCGTAGTTCGCACTAT+TGG | - | chr1_4:23817800-23817819 | Msa0156980:intron | 50.0% | |
| AGTGACACTTCCCAAGATGG+TGG | - | chr1_4:23817920-23817939 | Msa0156980:intron | 50.0% | |
| !! | ACACTTCCCAAGATGGTGGA+TGG | - | chr1_4:23817924-23817943 | Msa0156980:intron | 50.0% |
| GCAAGATCCATCCACCATCT+TGG | + | chr1_4:23817934-23817953 | None:intergenic | 50.0% | |
| GCAATCCTTTGGTAAGCCCT+AGG | - | chr1_4:23817984-23818003 | Msa0156980:intron | 50.0% | |
| TGGAACCTAGGGCTTACCAA+AGG | + | chr1_4:23817992-23818011 | None:intergenic | 50.0% | |
| ACAAGTACAGTGATTGCGGC+AGG | + | chr1_4:23818209-23818228 | None:intergenic | 50.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_4:23817687-23817706 | Msa0156980:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_4:23817688-23817707 | Msa0156980:CDS | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_4:23817830-23817849 | Msa0156980:intron | 55.0% | |
| TCGGCACCGCAAAGAATCCA+TGG | - | chr1_4:23817687-23817706 | Msa0156980:CDS | 55.0% | |
| CGGCACCGCAAAGAATCCAT+GGG | - | chr1_4:23817688-23817707 | Msa0156980:CDS | 55.0% | |
| AGATGGGAAGGTGAAGACGC+TGG | - | chr1_4:23817830-23817849 | Msa0156980:intron | 55.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_4:23818203-23818222 | None:intergenic | 60.0% | |
| ACAGTGATTGCGGCAGGTCC+AGG | + | chr1_4:23818203-23818222 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 23817557 | 23819331 | 23817557 | ID=Msa0156980;Name=Msa0156980 |
| chr1_4 | mRNA | 23817557 | 23819331 | 23817557 | ID=Msa0156980-mRNA-1;Parent=Msa0156980;Name=Msa0156980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|319 |
| chr1_4 | exon | 23818894 | 23819331 | 23818894 | ID=Msa0156980-mRNA-1:exon:8302;Parent=Msa0156980-mRNA-1 |
| chr1_4 | exon | 23818662 | 23818787 | 23818662 | ID=Msa0156980-mRNA-1:exon:8301;Parent=Msa0156980-mRNA-1 |
| chr1_4 | exon | 23818102 | 23818251 | 23818102 | ID=Msa0156980-mRNA-1:exon:8300;Parent=Msa0156980-mRNA-1 |
| chr1_4 | exon | 23817557 | 23817802 | 23817557 | ID=Msa0156980-mRNA-1:exon:8299;Parent=Msa0156980-mRNA-1 |
| chr1_4 | CDS | 23818894 | 23819331 | 23818894 | ID=Msa0156980-mRNA-1:cds;Parent=Msa0156980-mRNA-1 |
| chr1_4 | CDS | 23818662 | 23818787 | 23818662 | ID=Msa0156980-mRNA-1:cds;Parent=Msa0156980-mRNA-1 |
| chr1_4 | CDS | 23818102 | 23818251 | 23818102 | ID=Msa0156980-mRNA-1:cds;Parent=Msa0156980-mRNA-1 |
| chr1_4 | CDS | 23817557 | 23817802 | 23817557 | ID=Msa0156980-mRNA-1:cds;Parent=Msa0156980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
