AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0157390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157390 MtrunA17_Chr2g0294841 98.423 761 11 1 1 760 1 761 0.0 1576
Msa0157390 MtrunA17_Chr2g0276841 58.626 655 252 4 22 666 42 687 0.0 815
Msa0157390 MtrunA17_Chr1g0198761 41.811 751 409 10 2 744 3 733 0.0 592
Msa0157390 MtrunA17_Chr2g0290391 39.939 651 369 5 21 660 27 666 6.09e-167 498
Msa0157390 MtrunA17_Chr5g0431001 49.537 432 210 3 44 470 60 488 8.10e-146 436
Msa0157390 MtrunA17_Chr5g0448761 29.422 571 387 10 42 603 57 620 4.07e-79 270
Msa0157390 MtrunA17_Chr1g0202341 27.303 597 408 11 14 603 27 604 6.41e-67 234
Msa0157390 MtrunA17_Chr2g0329031 28.076 577 367 13 51 611 20 564 1.09e-65 232
Msa0157390 MtrunA17_Chr3g0080351 27.888 606 380 13 14 603 54 618 7.70e-65 231
Msa0157390 MtrunA17_Chr3g0082121 28.571 581 389 11 38 613 36 595 1.19e-62 223
Msa0157390 MtrunA17_Chr8g0363841 25.493 659 416 13 46 661 18 644 1.40e-61 219
Msa0157390 MtrunA17_Chr5g0441581 26.797 612 399 15 9 604 1 579 5.32e-59 212
Msa0157390 MtrunA17_Chr2g0287651 27.513 567 377 11 51 603 81 627 8.22e-59 214
Msa0157390 MtrunA17_Chr1g0207551 27.257 587 405 10 24 603 13 584 1.18e-58 213
Msa0157390 MtrunA17_Chr5g0440451 25.901 583 382 10 45 603 43 599 3.66e-55 204
Msa0157390 MtrunA17_Chr6g0458391 27.931 580 367 17 38 603 218 760 2.30e-54 200
Msa0157390 MtrunA17_Chr6g0458391 31.579 133 82 3 33 165 79 202 8.81e-12 68.9
Msa0157390 MtrunA17_Chr3g0118611 29.710 414 249 8 219 610 110 503 2.67e-53 197
Msa0157390 MtrunA17_Chr2g0296781 26.370 584 366 16 51 604 3 552 1.33e-51 192
Msa0157390 MtrunA17_Chr2g0324011 25.868 576 400 12 39 603 4 563 2.12e-51 189
Msa0157390 MtrunA17_Chr5g0448511 29.491 373 257 4 236 603 21 392 6.12e-51 187
Msa0157390 MtrunA17_Chr2g0287061 26.003 573 365 12 38 603 176 696 4.27e-50 188
Msa0157390 MtrunA17_Chr1g0203051 24.382 607 408 15 10 595 45 621 6.87e-49 182
Msa0157390 MtrunA17_Chr1g0203721 25.729 583 390 13 41 603 59 618 1.53e-48 184
Msa0157390 MtrunA17_Chr6g0477261 27.314 443 307 9 174 604 2 441 3.25e-46 175
Msa0157390 MtrunA17_Chr1g0196541 23.147 661 422 16 51 679 3 609 8.42e-42 163
Msa0157390 MtrunA17_Chr2g0291581 24.000 575 392 10 45 603 71 616 4.95e-39 154
Msa0157390 MtrunA17_Chr2g0291591 24.908 546 353 15 36 557 55 567 1.34e-34 139
Msa0157390 MtrunA17_Chr1g0164591 26.415 318 223 3 130 446 1 308 5.48e-33 130
Msa0157390 MtrunA17_Chr3g0081281 54.839 93 42 0 191 283 1 93 8.63e-30 113
Msa0157390 MtrunA17_Chr7g0258861 27.119 295 201 7 39 329 4 288 1.45e-22 99.4
Msa0157390 MtrunA17_Chr1g0171741 31.638 177 99 8 11 173 86 254 8.27e-13 69.3
Msa0157390 MtrunA17_Chr7g0233911 36.364 110 63 3 45 154 34 136 2.46e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157390 AT1G10240.2 57.815 659 274 2 18 676 21 675 0.0 817
Msa0157390 AT1G10240.1 57.815 659 274 2 18 676 21 675 0.0 817
Msa0157390 AT5G28530.3 40.491 652 352 9 26 661 39 670 3.69e-164 490
Msa0157390 AT5G28530.2 40.491 652 352 9 26 661 39 670 3.69e-164 490
Msa0157390 AT5G28530.1 40.031 652 359 8 26 661 39 674 6.09e-164 490
Msa0157390 AT5G28530.4 36.604 642 332 9 26 661 39 611 7.12e-130 400
Msa0157390 AT5G28530.5 37.072 642 325 10 26 661 39 607 7.50e-130 400
Msa0157390 AT4G38180.1 30.729 576 385 9 41 610 69 636 1.23e-82 280
Msa0157390 AT4G15090.1 26.947 642 444 12 19 649 25 652 1.56e-63 228
Msa0157390 AT4G15090.5 26.947 642 444 12 19 649 25 652 1.56e-63 228
Msa0157390 AT4G15090.3 26.947 642 444 12 19 649 25 652 1.56e-63 228
Msa0157390 AT4G15090.2 26.947 642 444 12 19 649 25 652 1.56e-63 228
Msa0157390 AT4G15090.4 26.947 642 444 12 19 649 25 652 1.56e-63 228
Msa0157390 AT3G22170.2 25.589 637 403 18 22 626 33 630 1.43e-60 219
Msa0157390 AT3G22170.1 25.589 637 403 18 22 626 33 630 1.43e-60 219
Msa0157390 AT1G76320.3 27.353 563 373 10 51 603 3 539 1.87e-56 205
Msa0157390 AT1G76320.2 27.353 563 373 10 51 603 3 539 3.65e-56 205
Msa0157390 AT1G76320.1 27.353 563 373 10 51 603 3 539 3.97e-56 205
Msa0157390 AT1G76320.4 27.353 563 373 10 51 603 3 539 3.97e-56 205
Msa0157390 AT2G27110.2 26.403 606 373 17 11 603 29 574 7.02e-52 194
Msa0157390 AT2G27110.1 26.403 606 373 17 11 603 29 574 7.02e-52 194
Msa0157390 AT4G19990.3 25.958 574 364 11 48 603 24 554 1.96e-48 183
Msa0157390 AT4G19990.4 25.958 574 364 11 48 603 24 554 1.96e-48 183
Msa0157390 AT4G19990.5 25.958 574 364 11 48 603 24 554 2.15e-48 183
Msa0157390 AT4G19990.7 25.958 574 364 11 48 603 38 568 2.18e-48 183
Msa0157390 AT4G19990.6 25.958 574 364 11 48 603 24 554 3.76e-48 182
Msa0157390 AT4G19990.2 25.958 574 364 11 48 603 24 554 3.76e-48 182
Msa0157390 AT2G27110.3 29.765 383 259 7 227 603 51 429 4.57e-47 179
Msa0157390 AT1G52520.1 26.019 638 394 19 45 647 85 679 2.81e-46 176
Msa0157390 AT3G06250.2 26.990 578 335 18 45 603 190 699 5.65e-46 176
Msa0157390 AT3G06250.1 26.990 578 335 18 45 603 190 699 5.65e-46 176
Msa0157390 AT3G06250.3 26.990 578 335 18 45 603 190 699 5.65e-46 176
Msa0157390 AT1G80010.1 25.763 590 381 16 45 604 95 657 1.79e-43 168
Msa0157390 AT2G32250.5 23.944 568 368 13 48 607 41 552 4.02e-43 167
Msa0157390 AT2G32250.6 23.944 568 368 13 48 607 41 552 4.45e-43 168
Msa0157390 AT2G32250.1 23.944 568 368 13 48 607 41 552 4.45e-43 168
Msa0157390 AT2G32250.3 23.944 568 368 13 48 607 41 552 4.45e-43 168
Msa0157390 AT2G32250.2 23.944 568 368 13 48 607 41 552 5.14e-43 167
Msa0157390 AT2G32250.4 23.944 568 368 13 48 607 41 552 5.14e-43 167
Msa0157390 AT5G18960.2 25.220 567 362 15 45 603 211 723 9.56e-43 167
Msa0157390 AT5G18960.1 25.220 567 362 15 45 603 211 723 9.56e-43 167
Msa0157390 AT2G32250.7 23.894 565 366 13 51 607 3 511 1.40e-42 166
Msa0157390 AT2G32250.8 23.894 565 366 13 51 607 3 511 1.43e-42 166
Msa0157390 AT4G19990.1 25.660 530 334 10 92 603 10 497 2.72e-42 164
Msa0157390 AT4G38170.1 27.822 381 260 7 231 603 21 394 2.28e-41 159
Msa0157390 AT3G07500.1 26.484 219 142 7 15 225 3 210 1.23e-11 65.5

Find 181 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTCAGAAGGTTTATTT+TGG 0.139353 1_4:-24625942 None:intergenic
TCCAAATATTGTATCCTTTC+AGG 0.144098 1_4:-24629383 None:intergenic
ATGACATGCTGTTGGGAATT+TGG 0.166402 1_4:+24626508 Msa0157390:CDS
CTTGACAGAATTGTTTCTTC+TGG 0.176241 1_4:-24625730 None:intergenic
TCACTTCAACTGTATGAAAT+TGG 0.198872 1_4:+24624596 Msa0157390:five_prime_UTR
ATTCAATCATATGAGGTATT+TGG 0.211487 1_4:+24626444 Msa0157390:CDS
GTTCCATCGGCTCTACAATT+TGG 0.214855 1_4:+24628577 Msa0157390:CDS
AATCGTGTCGGAATCGTTTC+CGG 0.230696 1_4:-24624518 None:intergenic
ACCTCAATATGCATCCTTTC+TGG 0.234586 1_4:+24629106 Msa0157390:CDS
GCCTGAAAGGATACAATATT+TGG 0.244750 1_4:+24629382 Msa0157390:CDS
TGACATTATGCAGGCTTTCT+TGG 0.255053 1_4:+24628373 Msa0157390:intron
TATACTCATTAAGGACATTC+TGG 0.255249 1_4:+24628681 Msa0157390:CDS
TTTGATTTCAACACTTCTAA+TGG 0.258402 1_4:+24629409 Msa0157390:CDS
CAAAAGGCATGTTTACTTTC+GGG 0.259449 1_4:-24628476 None:intergenic
GTGTTAGAATCATCCGAAAA+TGG 0.272557 1_4:+24625664 Msa0157390:CDS
GTCCCTGAATGGCGTGTTAC+TGG 0.284993 1_4:+24626054 Msa0157390:CDS
AAGGCAAATGTTAAGATTAA+TGG 0.285271 1_4:+24626203 Msa0157390:CDS
CCCTAGTTGCACCATGAAAA+TGG 0.296263 1_4:-24629355 None:intergenic
TTGAGGCGATATTTCTTTGC+AGG 0.296991 1_4:+24628716 Msa0157390:CDS
TTGACAGAATTGTTTCTTCT+GGG 0.311597 1_4:-24625729 None:intergenic
ACAAATCTTTGACCAATAAA+AGG 0.311831 1_4:-24625775 None:intergenic
CAATTTATGTATCATTGAAT+TGG 0.318761 1_4:-24629901 None:intergenic
CCGTTGGATGAAAACGTTAA+TGG 0.319103 1_4:-24628765 None:intergenic
TGGCTTGGATTGGACAATAA+TGG 0.319336 1_4:+24626528 Msa0157390:CDS
ACAAAAGGCATGTTTACTTT+CGG 0.321090 1_4:-24628477 None:intergenic
ATGGAGGTTGCAAAGTGTTT+TGG 0.321516 1_4:+24629171 Msa0157390:CDS
TTATTAGCCTATACTCATTA+AGG 0.323374 1_4:+24628672 Msa0157390:CDS
GACATTATGCAGGCTTTCTT+GGG 0.327633 1_4:+24628374 Msa0157390:intron
CCTCATGATTCCATGGCTTT+AGG 0.327738 1_4:+24629623 Msa0157390:CDS
CTCACATCTATCTCTGTAAA+AGG 0.340205 1_4:-24626258 None:intergenic
AGGCAAATGGTGGATAAATA+TGG 0.340475 1_4:+24628629 Msa0157390:CDS
AACCACAGCGAGATGATTTA+CGG 0.342181 1_4:-24625990 None:intergenic
AACGATTCCGACACGATTTA+CGG 0.345946 1_4:+24624523 Msa0157390:five_prime_UTR
AAACCAGTAACACGCCATTC+AGG 0.361653 1_4:-24626057 None:intergenic
GGATGATTCTAACACAAAAC+TGG 0.371625 1_4:-24625656 None:intergenic
ATCGTGTCGGAATCGTTTCC+GGG 0.372361 1_4:-24624517 None:intergenic
TCACCATTATGTGCACAATA+TGG 0.372426 1_4:+24629710 Msa0157390:CDS
CTTTAGCAAACATGCATATA+CGG 0.380754 1_4:-24626167 None:intergenic
GATACTGATGAAATGATTCA+TGG 0.382834 1_4:+24629584 Msa0157390:CDS
ATTACAAAATTAATTCAAAT+AGG 0.386045 1_4:-24629952 None:intergenic
CTTTAGTTGCGCCCTTCTGC+GGG 0.388321 1_4:+24626563 Msa0157390:CDS
GTGCTGCAACTAGCTCTTCC+TGG 0.388829 1_4:-24629085 None:intergenic
GGCCAACCCCATCTTTCCCT+CGG 0.389341 1_4:-24625873 None:intergenic
CTCTTATCATCAGGAGATAT+CGG 0.409413 1_4:-24626144 None:intergenic
CACCGCACCCGAGGGAAAGA+TGG 0.410004 1_4:+24625865 Msa0157390:CDS
GTCAGTACTAAGAGCAAAGT+TGG 0.410201 1_4:-24625614 None:intergenic
CAAAATAAACCTTCTGAAGA+TGG 0.410862 1_4:+24625943 Msa0157390:CDS
GTTGGGAATTTGGCTTGGAT+TGG 0.415439 1_4:+24626518 Msa0157390:CDS
AGATCTGCTGCAACACAATT+CGG 0.416215 1_4:-24624569 None:intergenic
TCAAGATAGATAATAATAAC+AGG 0.416672 1_4:+24626388 Msa0157390:CDS
TGATCAGTCAGTATTGTTTG+TGG 0.423171 1_4:-24628416 None:intergenic
TGGATCTGATTGCTCAATAA+TGG 0.423232 1_4:+24629739 Msa0157390:CDS
AGATTAATGGAGCTAGAAAA+AGG 0.423796 1_4:+24626216 Msa0157390:CDS
TTGAATAAGACGCACCTCAT+TGG 0.427145 1_4:-24626112 None:intergenic
CAGAAAGTCTGCCTGAAAAC+AGG 0.429730 1_4:+24629005 Msa0157390:CDS
AATATGAGTGAAGATGCATT+AGG 0.432322 1_4:+24629770 Msa0157390:CDS
ATAAAACCAGTCAGAGAACT+TGG 0.433668 1_4:-24628516 None:intergenic
AATTCCCAACAGCATGTCAT+AGG 0.437999 1_4:-24626505 None:intergenic
TGGAGTTTGCTCAAGGCATA+AGG 0.440065 1_4:-24629065 None:intergenic
ATGCTGTTGGGAATTTGGCT+TGG 0.440367 1_4:+24626513 Msa0157390:CDS
CCGATCCGATGGCGAAGCAT+TGG 0.446813 1_4:+24629317 Msa0157390:CDS
TTTATGTATCATTGAATTGG+AGG 0.452357 1_4:-24629898 None:intergenic
ATATGCATGTTTGCTAAAGC+TGG 0.454030 1_4:+24626171 Msa0157390:CDS
TTCTCTCCAAGTTCTCTGAC+TGG 0.459666 1_4:+24628510 Msa0157390:CDS
TCATCAGTATCTTCTACCTC+TGG 0.460431 1_4:-24629572 None:intergenic
AAGAAATATCGCCTCAAGAA+TGG 0.462464 1_4:-24628710 None:intergenic
GGGAAAGATGGGGTTGGCCG+AGG 0.467224 1_4:+24625877 Msa0157390:CDS
ACACGCAGCAGTGAACTTCC+CGG 0.472012 1_4:+24624499 Msa0157390:five_prime_UTR
CATATACGGCTCTTATCATC+AGG 0.473122 1_4:-24626153 None:intergenic
ATATGAGTGAAGATGCATTA+GGG 0.474188 1_4:+24629771 Msa0157390:CDS
GAGAATATGCCATATACAAA+AGG 0.474322 1_4:-24628492 None:intergenic
GCTTTAGTTGCGCCCTTCTG+CGG 0.475590 1_4:+24626562 Msa0157390:CDS
AAAATAAACCTTCTGAAGAT+GGG 0.478175 1_4:+24625944 Msa0157390:CDS
CGGATCGGTAAATATTGATC+CGG 0.479172 1_4:-24629302 None:intergenic
CTCATCAATTCAATCATATG+AGG 0.479395 1_4:+24626437 Msa0157390:CDS
ACCGCACCCGAGGGAAAGAT+GGG 0.481862 1_4:+24625866 Msa0157390:CDS
ATTGAATTGGAGGAAACAAA+TGG 0.482950 1_4:-24629888 None:intergenic
AAATGGCACGGATTTGTCTC+AGG 0.484239 1_4:+24625681 Msa0157390:CDS
TGTCCATATTGTGCACATAA+TGG 0.485930 1_4:-24629713 None:intergenic
GTGGCAGCATGGGATTCTAT+AGG 0.487656 1_4:-24629032 None:intergenic
CTTGGGCTTCATGAAAGGAA+AGG 0.491097 1_4:+24628391 Msa0157390:CDS
ATACTCATTAAGGACATTCT+GGG 0.491639 1_4:+24628682 Msa0157390:CDS
GCCAACCCCATCTTTCCCTC+GGG 0.498859 1_4:-24625872 None:intergenic
CAGCTCCATCATCGTCAAGC+TGG 0.500752 1_4:+24624472 Msa0157390:five_prime_UTR
CCCCATCTTTCCCTCGGGTG+CGG 0.504235 1_4:-24625867 None:intergenic
TTATGCCTTGAGCAAACTCC+AGG 0.504552 1_4:+24629067 Msa0157390:CDS
TCGGCTCTACAATTTGGAAA+TGG 0.504763 1_4:+24628583 Msa0157390:CDS
TGCTTGTGACCAAGTTTCAA+TGG 0.504988 1_4:+24629463 Msa0157390:CDS
TGACAGAATTGTTTCTTCTG+GGG 0.509932 1_4:-24625728 None:intergenic
GCTTTCTTGGGCTTCATGAA+AGG 0.511793 1_4:+24628386 Msa0157390:CDS
GAGGCCTATGACATGCTGTT+GGG 0.513583 1_4:+24626501 Msa0157390:CDS
CATGGCTTTAGGCAAGCTAA+AGG 0.513686 1_4:+24629634 Msa0157390:CDS
TGAAGAAAGCTGGAGGCAAA+TGG 0.514494 1_4:+24628616 Msa0157390:CDS
CTCTTCCTGGAGTTTGCTCA+AGG 0.516928 1_4:-24629072 None:intergenic
TGACTCCAGCTTGACGATGA+TGG 0.518258 1_4:-24624477 None:intergenic
AACCAGTAACACGCCATTCA+GGG 0.519550 1_4:-24626056 None:intergenic
TGCAAATCCTCATGATTCCA+TGG 0.519849 1_4:+24629616 Msa0157390:CDS
CTTTAGCTTGCCTAAAGCCA+TGG 0.519923 1_4:-24629633 None:intergenic
AGAATGTCCTTAATGAGTAT+AGG 0.523345 1_4:-24628679 None:intergenic
GAGTACATTGCATGGTCCTA+CGG 0.523416 1_4:+24626414 Msa0157390:CDS
AAGGAGAGAAGGGCAAGAGA+TGG 0.526646 1_4:+24629653 Msa0157390:CDS
GCATCCTTTCTGGTTGATGA+AGG 0.529559 1_4:+24629116 Msa0157390:CDS
AACCTCCATCGGTCTGAGAA+TGG 0.539487 1_4:-24629157 None:intergenic
AAACACTTTGCAACCTCCAT+CGG 0.539933 1_4:-24629168 None:intergenic
TATTGCATTTAGTTATGCAT+CGG 0.541431 1_4:+24629535 Msa0157390:CDS
GGACTCGGTCTGACATGTAC+TGG 0.541636 1_4:-24628744 None:intergenic
GGCATAAGGAGTAAGTATAG+TGG 0.542397 1_4:-24629051 None:intergenic
AGAGGCCTATGACATGCTGT+TGG 0.543489 1_4:+24626500 Msa0157390:CDS
CAACTAGGGATCAGCCTGAA+AGG 0.544870 1_4:+24629369 Msa0157390:CDS
CAGTATCTTCTACCTCTGGC+AGG 0.547423 1_4:-24629568 None:intergenic
TAGGCAAGCTAAAGGAGAGA+AGG 0.550540 1_4:+24629642 Msa0157390:CDS
TAAATTGTCTACCACTCTTG+TGG 0.551042 1_4:+24629917 Msa0157390:three_prime_UTR
ATCAATATTTACCGATCCGA+TGG 0.556315 1_4:+24629306 Msa0157390:CDS
ACCAGAAAGGATGCATATTG+AGG 0.558654 1_4:-24629107 None:intergenic
AGTAAGTATAGTGGCAGCAT+GGG 0.558789 1_4:-24629042 None:intergenic
GCATACTTTCATCCCGCAGA+AGG 0.560022 1_4:-24626575 None:intergenic
AAGGCGTTCCTCAGTTTCAA+CGG 0.562753 1_4:-24629435 None:intergenic
CTAAAGCTGGAATGTCGGTA+AGG 0.564431 1_4:+24626184 Msa0157390:CDS
GAGTAAGTATAGTGGCAGCA+TGG 0.565564 1_4:-24629043 None:intergenic
GTGATAGCACCATTGAAACT+TGG 0.565620 1_4:-24629472 None:intergenic
AGTGGAAAGCTGAGTTCCAT+CGG 0.569331 1_4:+24628564 Msa0157390:CDS
CCAATGCTTCGCCATCGGAT+CGG 0.569640 1_4:-24629317 None:intergenic
CTTGGTCACAAGCAACATCA+AGG 0.570174 1_4:-24629454 None:intergenic
TGTGCACAATATGGACATGA+TGG 0.571985 1_4:+24629719 Msa0157390:CDS
AATCCCTCCTTGTTACTCCT+CGG 0.572238 1_4:-24625894 None:intergenic
TGAGGTATTTGGTGATGCTG+TGG 0.573633 1_4:+24626455 Msa0157390:CDS
AGGCAAGCTAAAGGAGAGAA+GGG 0.573940 1_4:+24629643 Msa0157390:CDS
TGGATATGATTCTATGAACA+AGG 0.575281 1_4:+24624616 Msa0157390:five_prime_UTR
ATTTATGCCATGTGATGACC+TGG 0.577733 1_4:-24629510 None:intergenic
GCTCTACAATTTGGAAATGG+TGG 0.580387 1_4:+24628586 Msa0157390:CDS
TGTAGTGAATAGAAGTAACT+AGG 0.580877 1_4:+24629798 Msa0157390:exon
ACAACCTTCATCAACCAGAA+AGG 0.583485 1_4:-24629120 None:intergenic
TTGGGTCGCAATACGATGAG+TGG 0.584461 1_4:+24628546 Msa0157390:CDS
TCTGGGCTTTACCATTCTTG+AGG 0.584691 1_4:+24628699 Msa0157390:CDS
ACAAACCAATGCTTCGCCAT+CGG 0.585042 1_4:-24629322 None:intergenic
TTTCCAAATTGTAGAGCCGA+TGG 0.585557 1_4:-24628580 None:intergenic
GAGCAAAGCAAAAGATGCAA+AGG 0.586020 1_4:+24628976 Msa0157390:CDS
CAGCTGATGTGCTCTTGACA+AGG 0.588190 1_4:-24629197 None:intergenic
TCAGTACTAAGAGCAAAGTT+GGG 0.593275 1_4:-24625613 None:intergenic
CATACTTTCATCCCGCAGAA+GGG 0.593580 1_4:-24626574 None:intergenic
ATTAGACGACACCGCACCCG+AGG 0.595086 1_4:+24625856 Msa0157390:CDS
AAATAAACCTTCTGAAGATG+GGG 0.596801 1_4:+24625945 Msa0157390:CDS
GTCATAGGCCTCTACTCGGT+AGG 0.599446 1_4:-24626490 None:intergenic
CACGTGTTAAAACTCTTCCC+AGG 0.602561 1_4:+24629492 Msa0157390:CDS
GCATGTCATAGGCCTCTACT+CGG 0.603797 1_4:-24626494 None:intergenic
ACCCGAGGGAAAGATGGGGT+TGG 0.604145 1_4:+24625871 Msa0157390:CDS
ATTGTGCACTCAAGAACCGT+TGG 0.604864 1_4:-24628781 None:intergenic
AATGGAATCCGTTGAAACTG+AGG 0.605527 1_4:+24629427 Msa0157390:CDS
TGATACAACCTACCGAGTAG+AGG 0.608589 1_4:+24626482 Msa0157390:CDS
GGGGAGGAGGAAAAGCGCAA+AGG 0.609723 1_4:+24625965 Msa0157390:CDS
GTTTGCTAAAGCTGGAATGT+CGG 0.610570 1_4:+24626179 Msa0157390:CDS
TGCCTGAAAACTCAAATAGA+CGG 0.614950 1_4:-24629226 None:intergenic
GGATCGGTAAATATTGATCC+GGG 0.615359 1_4:-24629301 None:intergenic
CACCATTCTCAGACCGATGG+AGG 0.619807 1_4:+24629155 Msa0157390:CDS
GGATGACATTGGCACTGTCG+AGG 0.620402 1_4:+24625702 Msa0157390:CDS
TGATTGAATTGATGAGCCGT+AGG 0.623124 1_4:-24626430 None:intergenic
GATGAAAACGTTAATGGACT+CGG 0.633126 1_4:-24628759 None:intergenic
TTTGGGGAAATCCGCCGCGG+TGG 0.634972 1_4:-24625924 None:intergenic
AGACACCATTCTCAGACCGA+TGG 0.638459 1_4:+24629152 Msa0157390:CDS
CCTAAAGCCATGGAATCATG+AGG 0.642544 1_4:-24629623 None:intergenic
TTAGACGACACCGCACCCGA+GGG 0.644198 1_4:+24625857 Msa0157390:CDS
ACTGACAGCAGAATGTCAGA+AGG 0.645913 1_4:+24625631 Msa0157390:exon
GATTTGTCTCAGGATGACAT+TGG 0.645917 1_4:+24625691 Msa0157390:CDS
AGAATCATCCGAAAATGGCA+CGG 0.647458 1_4:+24625669 Msa0157390:CDS
AGAAAGCTGGAGGCAAATGG+TGG 0.650737 1_4:+24628619 Msa0157390:CDS
ACAGGCTCGAGTACATTGCA+TGG 0.652102 1_4:+24626406 Msa0157390:CDS
TACTGACTGATCATAACACA+TGG 0.653234 1_4:+24628426 Msa0157390:CDS
TGAGTTGTTAAAATCCAATG+AGG 0.655034 1_4:+24626098 Msa0157390:CDS
TTTGACCAATAAAAGGAACA+AGG 0.658851 1_4:-24625768 None:intergenic
ACTCTTCCCAGGTCATCACA+TGG 0.672595 1_4:+24629503 Msa0157390:CDS
AATAAACCTTCTGAAGATGG+GGG 0.678235 1_4:+24625946 Msa0157390:CDS
ATGGCGGCCGTAAATCGTGT+CGG 0.681854 1_4:-24624530 None:intergenic
GGGTTGGCCGAGGAGTAACA+AGG 0.686418 1_4:+24625887 Msa0157390:CDS
TGGCCGAGGAGTAACAAGGA+GGG 0.687273 1_4:+24625891 Msa0157390:CDS
AACCGTAAATCATCTCGCTG+TGG 0.688131 1_4:+24625988 Msa0157390:CDS
GGATTCATTGATCCTGCCAG+AGG 0.692463 1_4:+24629556 Msa0157390:CDS
TTGGCCGAGGAGTAACAAGG+AGG 0.692981 1_4:+24625890 Msa0157390:CDS
TTGATCTCAGTAGAAAACGT+AGG 0.706304 1_4:+24629678 Msa0157390:CDS
GAATTGGAGGAAACAAATGG+AGG 0.708764 1_4:-24629885 None:intergenic
CCGCACCCGAGGGAAAGATG+GGG 0.712775 1_4:+24625867 Msa0157390:CDS
TTTATGCCATGTGATGACCT+GGG 0.750808 1_4:-24629509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTTTTTTAATATTCA+GGG + chr1_4:24624703-24624722 Msa0157390:intron 10.0%
!!! TGATCTTATTTTTAAATTTT+AGG + chr1_4:24627294-24627313 Msa0157390:intron 10.0%
!!! GATCTTATTTTTAAATTTTA+GGG + chr1_4:24627295-24627314 Msa0157390:intron 10.0%
!! TAGTAAATTATAGTTAATTA+TGG - chr1_4:24628919-24628938 None:intergenic 10.0%
!! ATTACAAAATTAATTCAAAT+AGG - chr1_4:24629955-24629974 None:intergenic 10.0%
!! AAATTAATAAAGTGAGAAAT+GGG - chr1_4:24624648-24624667 None:intergenic 15.0%
!!! GCATTTTTTTTTTAATATTC+AGG + chr1_4:24624702-24624721 Msa0157390:intron 15.0%
!!! GTGTATGTTTTTTAATAATT+GGG + chr1_4:24624840-24624859 Msa0157390:intron 15.0%
!!! TGTATGTTTTTTAATAATTG+GGG + chr1_4:24624841-24624860 Msa0157390:intron 15.0%
!!! GATATGGATTAAATTTTAAA+CGG + chr1_4:24626885-24626904 Msa0157390:intron 15.0%
!!! TCTTTTAATATATAGATGAA+GGG - chr1_4:24626999-24627018 None:intergenic 15.0%
!!! ATCTATTTACTAAATTTTCA+TGG + chr1_4:24627212-24627231 Msa0157390:intron 15.0%
!! TAGGGAAAAAAAATTAAAAA+AGG + chr1_4:24627313-24627332 Msa0157390:intron 15.0%
!! TAAAGTTTAATCTTGAATAA+TGG + chr1_4:24627421-24627440 Msa0157390:intron 15.0%
!!! AATTTTGCCTAATAAATATT+TGG + chr1_4:24627811-24627830 Msa0157390:intron 15.0%
!!! ATTTTGCCTAATAAATATTT+GGG + chr1_4:24627812-24627831 Msa0157390:intron 15.0%
!!! CATATAAACTTTTATGATTT+TGG - chr1_4:24627943-24627962 None:intergenic 15.0%
!!! AAAATTTGCTATACAAATAT+TGG - chr1_4:24628299-24628318 None:intergenic 15.0%
!! AATTAACTATAATTTACTAC+AGG + chr1_4:24628920-24628939 Msa0157390:intron 15.0%
!! AATTAATAAAGTGAGAAATG+GGG - chr1_4:24624647-24624666 None:intergenic 20.0%
!! GAAATTAATAAAGTGAGAAA+TGG - chr1_4:24624649-24624668 None:intergenic 20.0%
!!! TTTTTTTTAATATTCAGGGT+TGG + chr1_4:24624707-24624726 Msa0157390:intron 20.0%
!!! CGTGTATGTTTTTTAATAAT+TGG + chr1_4:24624839-24624858 Msa0157390:intron 20.0%
!! TCAAGATAGATAATAATAAC+AGG + chr1_4:24626388-24626407 Msa0157390:CDS 20.0%
!! ATGCTATCATTAAAAAAGTA+AGG - chr1_4:24626794-24626813 None:intergenic 20.0%
!!! CTCTTTTAATATATAGATGA+AGG - chr1_4:24627000-24627019 None:intergenic 20.0%
!! AATAGATAACTAATTAGACA+AGG - chr1_4:24627199-24627218 None:intergenic 20.0%
!! TTGAGTGAATATTTCTTAAT+GGG - chr1_4:24627339-24627358 None:intergenic 20.0%
!! ATTGAGTGAATATTTCTTAA+TGG - chr1_4:24627340-24627359 None:intergenic 20.0%
!! CTTAAACCCAAATATTTATT+AGG - chr1_4:24627821-24627840 None:intergenic 20.0%
!! TTAAAAAGTTCACATGTTTA+AGG - chr1_4:24628002-24628021 None:intergenic 20.0%
!! AACCAAGACATTTAAAAAAA+AGG - chr1_4:24628045-24628064 None:intergenic 20.0%
!! TGCTCAAAAAAAAAAAACAA+AGG - chr1_4:24628855-24628874 None:intergenic 20.0%
!! CAATTTATGTATCATTGAAT+TGG - chr1_4:24629904-24629923 None:intergenic 20.0%
!!! ATTTTCAATCGATTCAATGT+GGG - chr1_4:24624879-24624898 None:intergenic 25.0%
! TTGAATCGATTGAAAATGTT+CGG + chr1_4:24624882-24624901 Msa0157390:intron 25.0%
!!! TGGTCTAGTTTTTAAAACAT+TGG + chr1_4:24625271-24625290 Msa0157390:intron 25.0%
! AAGTAATCTGATCCTTTATT+TGG + chr1_4:24625422-24625441 Msa0157390:intron 25.0%
! ACAAATCTTTGACCAATAAA+AGG - chr1_4:24625778-24625797 None:intergenic 25.0%
!!! ATCTTCAGAAGGTTTATTTT+GGG - chr1_4:24625944-24625963 None:intergenic 25.0%
!! AAAATAAACCTTCTGAAGAT+GGG + chr1_4:24625944-24625963 Msa0157390:CDS 25.0%
!!! ATTTTAACAACTCATGATTG+TGG - chr1_4:24626092-24626111 None:intergenic 25.0%
! AAGGCAAATGTTAAGATTAA+TGG + chr1_4:24626203-24626222 Msa0157390:CDS 25.0%
!! ATTCAATCATATGAGGTATT+TGG + chr1_4:24626444-24626463 Msa0157390:CDS 25.0%
! ACAATACCATCATATCTTAT+CGG - chr1_4:24626754-24626773 None:intergenic 25.0%
! TATGTGGAAAAACCAAAAAT+GGG - chr1_4:24626943-24626962 None:intergenic 25.0%
! ATATGTGGAAAAACCAAAAA+TGG - chr1_4:24626944-24626963 None:intergenic 25.0%
! TTTGATCATATAAGCTATGA+TGG + chr1_4:24627514-24627533 Msa0157390:intron 25.0%
! ACTTGAACAAAAAGACATAA+AGG + chr1_4:24627746-24627765 Msa0157390:intron 25.0%
! AAAGACATAAAGGACTAATA+CGG + chr1_4:24627756-24627775 Msa0157390:intron 25.0%
! GAAATAACTTAAAGGATGAT+AGG + chr1_4:24627785-24627804 Msa0157390:intron 25.0%
!!! AAAGGTCACATGTTTTTTTT+TGG - chr1_4:24628027-24628046 None:intergenic 25.0%
!!! GACCTTTTTTTTAAATGTCT+TGG + chr1_4:24628040-24628059 Msa0157390:intron 25.0%
! TTACATGCATATGAAATTCA+AGG - chr1_4:24628116-24628135 None:intergenic 25.0%
!!! ACTGGTTTTATTTACTTCTT+GGG + chr1_4:24628528-24628547 Msa0157390:CDS 25.0%
!! TTATTAGCCTATACTCATTA+AGG + chr1_4:24628672-24628691 Msa0157390:CDS 25.0%
! TAACTATAATTTACTACAGG+TGG + chr1_4:24628923-24628942 Msa0157390:intron 25.0%
!! TCTTCTTTTAACCATTTTCA+TGG + chr1_4:24629344-24629363 Msa0157390:CDS 25.0%
!! TTTGATTTCAACACTTCTAA+TGG + chr1_4:24629409-24629428 Msa0157390:CDS 25.0%
! TATTGCATTTAGTTATGCAT+CGG + chr1_4:24629535-24629554 Msa0157390:CDS 25.0%
!!! TACAAAGCAAATGCATTTTT+TGG + chr1_4:24629823-24629842 Msa0157390:three_prime_UTR 25.0%
!!! ACAAAGCAAATGCATTTTTT+GGG + chr1_4:24629824-24629843 Msa0157390:three_prime_UTR 25.0%
! TTTATGTATCATTGAATTGG+AGG - chr1_4:24629901-24629920 None:intergenic 25.0%
TCACTTCAACTGTATGAAAT+TGG + chr1_4:24624596-24624615 Msa0157390:five_prime_UTR 30.0%
TGGATATGATTCTATGAACA+AGG + chr1_4:24624616-24624635 Msa0157390:five_prime_UTR 30.0%
TAGTGATGAATTTCATCTCA+AGG + chr1_4:24624740-24624759 Msa0157390:intron 30.0%
AGTGATGAATTTCATCTCAA+GGG + chr1_4:24624741-24624760 Msa0157390:intron 30.0%
!! CATTTTCAATCGATTCAATG+TGG - chr1_4:24624880-24624899 None:intergenic 30.0%
!!! CAATGTTTTGAAAACCGAAT+TGG + chr1_4:24624971-24624990 Msa0157390:intron 30.0%
!!! GTTTAGCTTTTTTCTTGGTA+TGG + chr1_4:24625129-24625148 Msa0157390:intron 30.0%
!!! TTTTTTCTTGGTATGGAGTT+TGG + chr1_4:24625136-24625155 Msa0157390:intron 30.0%
ATCTTGGATAAAACAATCCT+TGG - chr1_4:24625183-24625202 None:intergenic 30.0%
! TTTTATCCAAGATTCGAACT+CGG + chr1_4:24625190-24625209 Msa0157390:intron 30.0%
! AAACCTCAAAGTACTTAGTT+AGG - chr1_4:24625345-24625364 None:intergenic 30.0%
!! TAACTAAGTACTTTGAGGTT+TGG + chr1_4:24625344-24625363 Msa0157390:intron 30.0%
!! AACTAAGTACTTTGAGGTTT+GGG + chr1_4:24625345-24625364 Msa0157390:intron 30.0%
TCTTCTTAAGCACCAAATAA+AGG - chr1_4:24625437-24625456 None:intergenic 30.0%
! TTGACAGAATTGTTTCTTCT+GGG - chr1_4:24625732-24625751 None:intergenic 30.0%
! GTTAACCTTGTTCCTTTTAT+TGG + chr1_4:24625763-24625782 Msa0157390:CDS 30.0%
TTTGACCAATAAAAGGAACA+AGG - chr1_4:24625771-24625790 None:intergenic 30.0%
! TGCAGTTTTGCTAAACAATT+TGG + chr1_4:24625826-24625845 Msa0157390:CDS 30.0%
!!! TCTTCAGAAGGTTTATTTTG+GGG - chr1_4:24625943-24625962 None:intergenic 30.0%
! CATCTTCAGAAGGTTTATTT+TGG - chr1_4:24625945-24625964 None:intergenic 30.0%
! CAAAATAAACCTTCTGAAGA+TGG + chr1_4:24625943-24625962 Msa0157390:CDS 30.0%
! AAATAAACCTTCTGAAGATG+GGG + chr1_4:24625945-24625964 Msa0157390:CDS 30.0%
TGAGTTGTTAAAATCCAATG+AGG + chr1_4:24626098-24626117 Msa0157390:CDS 30.0%
CTTTAGCAAACATGCATATA+CGG - chr1_4:24626170-24626189 None:intergenic 30.0%
AGATTAATGGAGCTAGAAAA+AGG + chr1_4:24626216-24626235 Msa0157390:CDS 30.0%
CTCATCAATTCAATCATATG+AGG + chr1_4:24626437-24626456 Msa0157390:CDS 30.0%
TTTAATGCCCATGAAAAAGA+CGG - chr1_4:24626600-24626619 None:intergenic 30.0%
TCAAATACAAGATTGTCAAG+TGG - chr1_4:24626655-24626674 None:intergenic 30.0%
CTTCTTGATTGCTTGATATT+TGG + chr1_4:24626675-24626694 Msa0157390:intron 30.0%
! TTTTGTCCGATAAGATATGA+TGG + chr1_4:24626745-24626764 Msa0157390:intron 30.0%
AGAATTGTAGAAAAGGTCAA+CGG - chr1_4:24626830-24626849 None:intergenic 30.0%
TGTAACGAGAATTGTAGAAA+AGG - chr1_4:24626837-24626856 None:intergenic 30.0%
TCGTTACAAAAACATCTACA+TGG + chr1_4:24626849-24626868 Msa0157390:intron 30.0%
AAAACCAAAAATGGGAAAGA+AGG - chr1_4:24626935-24626954 None:intergenic 30.0%
AAATCGAGTGAATTTAGTGA+GGG - chr1_4:24627135-24627154 None:intergenic 30.0%
AAAATCGAGTGAATTTAGTG+AGG - chr1_4:24627136-24627155 None:intergenic 30.0%
! TTTTTGTGTTGCAGATCATA+TGG + chr1_4:24627152-24627171 Msa0157390:intron 30.0%
!! AGATCATATGGTTCTGTTTT+AGG + chr1_4:24627164-24627183 Msa0157390:intron 30.0%
ACTTGATGTTGAAATCCTTT+GGG - chr1_4:24627273-24627292 None:intergenic 30.0%
GAAATTGGAACTACAACTAT+GGG - chr1_4:24627364-24627383 None:intergenic 30.0%
TGAAATTGGAACTACAACTA+TGG - chr1_4:24627365-24627384 None:intergenic 30.0%
!!! CCAAGAATGTGTTTTGAAAT+TGG - chr1_4:24627379-24627398 None:intergenic 30.0%
CCAATTTCAAAACACATTCT+TGG + chr1_4:24627376-24627395 Msa0157390:intron 30.0%
TGAAAATCATAGGACTACAA+TGG - chr1_4:24627604-24627623 None:intergenic 30.0%
! ATTGTAGTCCTATGATTTTC+AGG + chr1_4:24627603-24627622 Msa0157390:intron 30.0%
! TTGTAGTCCTATGATTTTCA+GGG + chr1_4:24627604-24627623 Msa0157390:intron 30.0%
TATGAAACCCTGAAAATCAT+AGG - chr1_4:24627614-24627633 None:intergenic 30.0%
!! ATGATTTTCAGGGTTTCATA+AGG + chr1_4:24627614-24627633 Msa0157390:intron 30.0%
CTGTTACTAAAATGTCTATG+TGG - chr1_4:24627693-24627712 None:intergenic 30.0%
!! CACATAGACATTTTAGTAAC+AGG + chr1_4:24627691-24627710 Msa0157390:intron 30.0%
ATCCCTAACTCATAATATGT+GGG - chr1_4:24627724-24627743 None:intergenic 30.0%
GGCACAATGAAATAACTTAA+AGG + chr1_4:24627777-24627796 Msa0157390:intron 30.0%
!! TTTAAATGTCTTGGTTTGTG+TGG + chr1_4:24628049-24628068 Msa0157390:intron 30.0%
ATTAGTGCCATAAAATACAC+CGG + chr1_4:24628159-24628178 Msa0157390:intron 30.0%
! TATTCTTCCGGTGTATTTTA+TGG - chr1_4:24628169-24628188 None:intergenic 30.0%
TCTTGTCTATTGAATCTAGT+AGG + chr1_4:24628199-24628218 Msa0157390:intron 30.0%
!!! ACGCACATTTTTTTTTCCTA+GGG - chr1_4:24628229-24628248 None:intergenic 30.0%
TCATCTTATTGACATTATGC+AGG + chr1_4:24628364-24628383 Msa0157390:intron 30.0%
! ACAAAAGGCATGTTTACTTT+CGG - chr1_4:24628480-24628499 None:intergenic 30.0%
! GTAAACATGCCTTTTGTATA+TGG + chr1_4:24628483-24628502 Msa0157390:CDS 30.0%
GAGAATATGCCATATACAAA+AGG - chr1_4:24628495-24628514 None:intergenic 30.0%
!!! GACTGGTTTTATTTACTTCT+TGG + chr1_4:24628527-24628546 Msa0157390:CDS 30.0%
AGAATGTCCTTAATGAGTAT+AGG - chr1_4:24628682-24628701 None:intergenic 30.0%
TATACTCATTAAGGACATTC+TGG + chr1_4:24628681-24628700 Msa0157390:CDS 30.0%
ATACTCATTAAGGACATTCT+GGG + chr1_4:24628682-24628701 Msa0157390:CDS 30.0%
! TAATAACTGTTTTCACATCC+CGG + chr1_4:24629283-24629302 Msa0157390:CDS 30.0%
TCCAAATATTGTATCCTTTC+AGG - chr1_4:24629386-24629405 None:intergenic 30.0%
GATACTGATGAAATGATTCA+TGG + chr1_4:24629584-24629603 Msa0157390:CDS 30.0%
AATATGAGTGAAGATGCATT+AGG + chr1_4:24629770-24629789 Msa0157390:CDS 30.0%
ATATGAGTGAAGATGCATTA+GGG + chr1_4:24629771-24629790 Msa0157390:CDS 30.0%
TGTAGTGAATAGAAGTAACT+AGG + chr1_4:24629798-24629817 Msa0157390:exon 30.0%
!!! CAAAGCAAATGCATTTTTTG+GGG + chr1_4:24629825-24629844 Msa0157390:three_prime_UTR 30.0%
!!! AAAGCAAATGCATTTTTTGG+GGG + chr1_4:24629826-24629845 Msa0157390:three_prime_UTR 30.0%
ATTGAATTGGAGGAAACAAA+TGG - chr1_4:24629891-24629910 None:intergenic 30.0%
!!! AACACAATTCGGTTTTGAAG+AGG - chr1_4:24624561-24624580 None:intergenic 35.0%
! ATCGATTCAATGTGGGATTT+GGG - chr1_4:24624872-24624891 None:intergenic 35.0%
! AATCGATTCAATGTGGGATT+TGG - chr1_4:24624873-24624892 None:intergenic 35.0%
ATGATTCAGCTGCATTAAAC+TGG + chr1_4:24625021-24625040 Msa0157390:intron 35.0%
TGATTCAGCTGCATTAAACT+GGG + chr1_4:24625022-24625041 Msa0157390:intron 35.0%
AACCAAATAGTAGATAGTGC+CGG + chr1_4:24625073-24625092 Msa0157390:intron 35.0%
!!! GTTCGGTTTAGCTTTTTTCT+TGG + chr1_4:24625124-24625143 Msa0157390:intron 35.0%
TTTATCCAAGATTCGAACTC+GGG + chr1_4:24625191-24625210 Msa0157390:intron 35.0%
AAGTACTTAGTTAGGACTAG+CGG - chr1_4:24625337-24625356 None:intergenic 35.0%
AGTCCTAACTAAGTACTTTG+AGG + chr1_4:24625339-24625358 Msa0157390:intron 35.0%
TCAGTACTAAGAGCAAAGTT+GGG - chr1_4:24625616-24625635 None:intergenic 35.0%
GGATGATTCTAACACAAAAC+TGG - chr1_4:24625659-24625678 None:intergenic 35.0%
GTGTTAGAATCATCCGAAAA+TGG + chr1_4:24625664-24625683 Msa0157390:CDS 35.0%
! TGACAGAATTGTTTCTTCTG+GGG - chr1_4:24625731-24625750 None:intergenic 35.0%
! CTTGACAGAATTGTTTCTTC+TGG - chr1_4:24625733-24625752 None:intergenic 35.0%
! AATAAACCTTCTGAAGATGG+GGG + chr1_4:24625946-24625965 Msa0157390:CDS 35.0%
CTCTTATCATCAGGAGATAT+CGG - chr1_4:24626147-24626166 None:intergenic 35.0%
! ATATGCATGTTTGCTAAAGC+TGG + chr1_4:24626171-24626190 Msa0157390:CDS 35.0%
!! CTAGAAAAAGGCATCAAACT+TGG + chr1_4:24626228-24626247 Msa0157390:CDS 35.0%
CTCACATCTATCTCTGTAAA+AGG - chr1_4:24626261-24626280 None:intergenic 35.0%
!! AAAGTATGCCGTCTTTTTCA+TGG + chr1_4:24626589-24626608 Msa0157390:CDS 35.0%
!! AAGTATGCCGTCTTTTTCAT+GGG + chr1_4:24626590-24626609 Msa0157390:CDS 35.0%
!! GTCTTTTTCATGGGCATTAA+AGG + chr1_4:24626599-24626618 Msa0157390:CDS 35.0%
GTGGAAGTTGTAACAACATA+TGG - chr1_4:24626636-24626655 None:intergenic 35.0%
! TGATTGCTTGATATTTGGTG+TGG + chr1_4:24626680-24626699 Msa0157390:intron 35.0%
!! GATTGCTTGATATTTGGTGT+GGG + chr1_4:24626681-24626700 Msa0157390:intron 35.0%
GCAATAGCTAGTACTATTGT+GGG - chr1_4:24626722-24626741 None:intergenic 35.0%
AGCAATAGCTAGTACTATTG+TGG - chr1_4:24626723-24626742 None:intergenic 35.0%
! AATTTTAAACGGCGTTAACG+TGG + chr1_4:24626896-24626915 Msa0157390:intron 35.0%
AATGGGAAAGAAGGTGAAAT+GGG - chr1_4:24626926-24626945 None:intergenic 35.0%
AAATGGGAAAGAAGGTGAAA+TGG - chr1_4:24626927-24626946 None:intergenic 35.0%
! TTCACCTTCTTTCCCATTTT+TGG + chr1_4:24626928-24626947 Msa0157390:intron 35.0%
GGAAGATAGAAGAGAATATG+TGG - chr1_4:24626959-24626978 None:intergenic 35.0%
! AATCCTTTGGGTTTGAAGTT+GGG - chr1_4:24627261-24627280 None:intergenic 35.0%
! AAATCCTTTGGGTTTGAAGT+TGG - chr1_4:24627262-24627281 None:intergenic 35.0%
CACTTGATGTTGAAATCCTT+TGG - chr1_4:24627274-24627293 None:intergenic 35.0%
! GTGAGATTTTGTGACATGTA+TGG + chr1_4:24627398-24627417 Msa0157390:intron 35.0%
TTAGACTTGTACTGAGAAGT+TGG + chr1_4:24627457-24627476 Msa0157390:intron 35.0%
ATATAAGCTATGATGGCTTG+TGG + chr1_4:24627521-24627540 Msa0157390:intron 35.0%
AGGGTTTCATAAGGTGAAAT+GGG + chr1_4:24627623-24627642 Msa0157390:intron 35.0%
GACCCACATATTATGAGTTA+GGG + chr1_4:24627719-24627738 Msa0157390:intron 35.0%
GATCCCTAACTCATAATATG+TGG - chr1_4:24627725-24627744 None:intergenic 35.0%
TTCACATGTTTAAGGAGCAA+AGG - chr1_4:24627994-24628013 None:intergenic 35.0%
!! ATGCATGTAAAAAGCACTGT+TGG + chr1_4:24628126-24628145 Msa0157390:intron 35.0%
!! TGCATGTAAAAAGCACTGTT+GGG + chr1_4:24628127-24628146 Msa0157390:intron 35.0%
! GGTGTATTTTATGGCACTAA+TGG - chr1_4:24628160-24628179 None:intergenic 35.0%
!!! CACGCACATTTTTTTTTCCT+AGG - chr1_4:24628230-24628249 None:intergenic 35.0%
TGATCAGTCAGTATTGTTTG+TGG - chr1_4:24628419-24628438 None:intergenic 35.0%
! TACTGACTGATCATAACACA+TGG + chr1_4:24628426-24628445 Msa0157390:CDS 35.0%
! CAAAAGGCATGTTTACTTTC+GGG - chr1_4:24628479-24628498 None:intergenic 35.0%
ATAAAACCAGTCAGAGAACT+TGG - chr1_4:24628519-24628538 None:intergenic 35.0%
!! TGGAAGATTTTGAAGAAAGC+TGG + chr1_4:24628606-24628625 Msa0157390:CDS 35.0%
!! AAGATTTTGAAGAAAGCTGG+AGG + chr1_4:24628609-24628628 Msa0157390:CDS 35.0%
!! AGGCAAATGGTGGATAAATA+TGG + chr1_4:24628629-24628648 Msa0157390:CDS 35.0%
AAGAAATATCGCCTCAAGAA+TGG - chr1_4:24628713-24628732 None:intergenic 35.0%
!! GATGAAAACGTTAATGGACT+CGG - chr1_4:24628762-24628781 None:intergenic 35.0%
! CCATTAACGTTTTCATCCAA+CGG + chr1_4:24628765-24628784 Msa0157390:CDS 35.0%
!! ACTTGCTCTAAAAAACGTTC+TGG - chr1_4:24628812-24628831 None:intergenic 35.0%
!! TTTCCTGCAGCTTTGTTTAT+TGG + chr1_4:24628884-24628903 Msa0157390:intron 35.0%
ATACCAATAAACAAAGCTGC+AGG - chr1_4:24628890-24628909 None:intergenic 35.0%
TGCCTGAAAACTCAAATAGA+CGG - chr1_4:24629229-24629248 None:intergenic 35.0%
ATCAATATTTACCGATCCGA+TGG + chr1_4:24629306-24629325 Msa0157390:CDS 35.0%
GCCTGAAAGGATACAATATT+TGG + chr1_4:24629382-24629401 Msa0157390:CDS 35.0%
TTGATCTCAGTAGAAAACGT+AGG + chr1_4:24629678-24629697 Msa0157390:CDS 35.0%
TCACCATTATGTGCACAATA+TGG + chr1_4:24629710-24629729 Msa0157390:CDS 35.0%
TGTCCATATTGTGCACATAA+TGG - chr1_4:24629716-24629735 None:intergenic 35.0%
TGGATCTGATTGCTCAATAA+TGG + chr1_4:24629739-24629758 Msa0157390:CDS 35.0%
TAAATTGTCTACCACTCTTG+TGG + chr1_4:24629917-24629936 Msa0157390:three_prime_UTR 35.0%
! CTGAAATTTTTCCACAAGAG+TGG - chr1_4:24629931-24629950 None:intergenic 35.0%
AACGATTCCGACACGATTTA+CGG + chr1_4:24624523-24624542 Msa0157390:five_prime_UTR 40.0%
!!! ACAATTCGGTTTTGAAGAGG+TGG - chr1_4:24624558-24624577 None:intergenic 40.0%
AGATCTGCTGCAACACAATT+CGG - chr1_4:24624572-24624591 None:intergenic 40.0%
AACCGAATTGGACATTGAAC+TGG + chr1_4:24624983-24625002 Msa0157390:intron 40.0%
CACCAGTTCAATGTCCAATT+CGG - chr1_4:24624988-24625007 None:intergenic 40.0%
AATTGGACATTGAACTGGTG+AGG + chr1_4:24624988-24625007 Msa0157390:intron 40.0%
ATTAAACTGGGACGAAACTG+CGG + chr1_4:24625034-24625053 Msa0157390:intron 40.0%
AACCGGCACTATCTACTATT+TGG - chr1_4:24625078-24625097 None:intergenic 40.0%
CAACCAGTTAAACCATGAAC+CGG - chr1_4:24625095-24625114 None:intergenic 40.0%
GTTTAACTGGTTGAACCATC+TGG + chr1_4:24625102-24625121 Msa0157390:intron 40.0%
AAAAGCTAAACCGAACCAGA+TGG - chr1_4:24625120-24625139 None:intergenic 40.0%
AATCCTTGGCCAACTTTACT+TGG - chr1_4:24625169-24625188 None:intergenic 40.0%
CACTTAAGTACAACTCGTTG+AGG - chr1_4:24625221-24625240 None:intergenic 40.0%
CTCAACGAGTTGTACTTAAG+TGG + chr1_4:24625219-24625238 Msa0157390:intron 40.0%
ATCACGTGAGCTTAATCACT+TGG + chr1_4:24625251-24625270 Msa0157390:intron 40.0%
! AGTACTTAGTTAGGACTAGC+GGG - chr1_4:24625336-24625355 None:intergenic 40.0%
! CTAGACTTGCTTTGTCTCTT+TGG + chr1_4:24625394-24625413 Msa0157390:intron 40.0%
TTTCTCATTGCTCGTCTTTC+AGG + chr1_4:24625575-24625594 Msa0157390:intron 40.0%
GTCAGTACTAAGAGCAAAGT+TGG - chr1_4:24625617-24625636 None:intergenic 40.0%
AGAATCATCCGAAAATGGCA+CGG + chr1_4:24625669-24625688 Msa0157390:CDS 40.0%
!!! AGACAAATCCGTGCCATTTT+CGG - chr1_4:24625680-24625699 None:intergenic 40.0%
GATTTGTCTCAGGATGACAT+TGG + chr1_4:24625691-24625710 Msa0157390:CDS 40.0%
AACCACAGCGAGATGATTTA+CGG - chr1_4:24625993-24626012 None:intergenic 40.0%
!! CAGATTTTGATGTCCCTGAA+TGG + chr1_4:24626043-24626062 Msa0157390:CDS 40.0%
TTGAATAAGACGCACCTCAT+TGG - chr1_4:24626115-24626134 None:intergenic 40.0%
CATATACGGCTCTTATCATC+AGG - chr1_4:24626156-24626175 None:intergenic 40.0%
! GTTTGCTAAAGCTGGAATGT+CGG + chr1_4:24626179-24626198 Msa0157390:CDS 40.0%
!! GTTGCAGTCTTTTAGAAACG+TGG + chr1_4:24626287-24626306 Msa0157390:CDS 40.0%
TGATTGAATTGATGAGCCGT+AGG - chr1_4:24626433-24626452 None:intergenic 40.0%
AATTCCCAACAGCATGTCAT+AGG - chr1_4:24626508-24626527 None:intergenic 40.0%
ATGACATGCTGTTGGGAATT+TGG + chr1_4:24626508-24626527 Msa0157390:CDS 40.0%
! TGGCTTGGATTGGACAATAA+TGG + chr1_4:24626528-24626547 Msa0157390:CDS 40.0%
ATGGGAAAGAAGGTGAAATG+GGG - chr1_4:24626925-24626944 None:intergenic 40.0%
TATAGATGAAGGGCCTAATG+TGG - chr1_4:24626989-24627008 None:intergenic 40.0%
!! CAGCTGAAACCTTTGAAATC+CGG - chr1_4:24627565-24627584 None:intergenic 40.0%
CAGGGTTTCATAAGGTGAAA+TGG + chr1_4:24627622-24627641 Msa0157390:intron 40.0%
GGGTTTCATAAGGTGAAATG+GGG + chr1_4:24627624-24627643 Msa0157390:intron 40.0%
CGACCCACATATTATGAGTT+AGG + chr1_4:24627718-24627737 Msa0157390:intron 40.0%
!! ATGCTACAGTAGAAGTGTCT+AGG + chr1_4:24627853-24627872 Msa0157390:intron 40.0%
!! ATGTCTTGGTTTGTGTGGAA+AGG + chr1_4:24628054-24628073 Msa0157390:intron 40.0%
!! GCATGTAAAAAGCACTGTTG+GGG + chr1_4:24628128-24628147 Msa0157390:intron 40.0%
!! AAAAAGCACTGTTGGGGTAT+CGG + chr1_4:24628134-24628153 Msa0157390:intron 40.0%
GAGTGAAGAGACTATTCTTC+CGG - chr1_4:24628181-24628200 None:intergenic 40.0%
TGACATTATGCAGGCTTTCT+TGG + chr1_4:24628373-24628392 Msa0157390:intron 40.0%
GACATTATGCAGGCTTTCTT+GGG + chr1_4:24628374-24628393 Msa0157390:intron 40.0%
TTTCCAAATTGTAGAGCCGA+TGG - chr1_4:24628583-24628602 None:intergenic 40.0%
TCGGCTCTACAATTTGGAAA+TGG + chr1_4:24628583-24628602 Msa0157390:CDS 40.0%
GCTCTACAATTTGGAAATGG+TGG + chr1_4:24628586-24628605 Msa0157390:CDS 40.0%
TTGAGGCGATATTTCTTTGC+AGG + chr1_4:24628716-24628735 Msa0157390:CDS 40.0%
CCGTTGGATGAAAACGTTAA+TGG - chr1_4:24628768-24628787 None:intergenic 40.0%
!! GTTGATTTTAATGACCGAGC+CGG + chr1_4:24628954-24628973 Msa0157390:CDS 40.0%
! TTGCATCTTTTGCTTTGCTC+CGG - chr1_4:24628976-24628995 None:intergenic 40.0%
GAGCAAAGCAAAAGATGCAA+AGG + chr1_4:24628976-24628995 Msa0157390:CDS 40.0%
! CTATAGGTGAACCTGTTTTC+AGG - chr1_4:24629019-24629038 None:intergenic 40.0%
AGTAAGTATAGTGGCAGCAT+GGG - chr1_4:24629045-24629064 None:intergenic 40.0%
GGCATAAGGAGTAAGTATAG+TGG - chr1_4:24629054-24629073 None:intergenic 40.0%
ACCTCAATATGCATCCTTTC+TGG + chr1_4:24629106-24629125 Msa0157390:CDS 40.0%
ACCAGAAAGGATGCATATTG+AGG - chr1_4:24629110-24629129 None:intergenic 40.0%
ACAACCTTCATCAACCAGAA+AGG - chr1_4:24629123-24629142 None:intergenic 40.0%
!!! GGTTGATGAAGGTTGTTTTC+AGG + chr1_4:24629127-24629146 Msa0157390:CDS 40.0%
AAACACTTTGCAACCTCCAT+CGG - chr1_4:24629171-24629190 None:intergenic 40.0%
!! ATGGAGGTTGCAAAGTGTTT+TGG + chr1_4:24629171-24629190 Msa0157390:CDS 40.0%
!! TGCCGTCTATTTGAGTTTTC+AGG + chr1_4:24629224-24629243 Msa0157390:CDS 40.0%
GGATCGGTAAATATTGATCC+GGG - chr1_4:24629304-24629323 None:intergenic 40.0%
CGGATCGGTAAATATTGATC+CGG - chr1_4:24629305-24629324 None:intergenic 40.0%
! ACCATTTTCATGGTGCAACT+AGG + chr1_4:24629354-24629373 Msa0157390:CDS 40.0%
! CCATTTTCATGGTGCAACTA+GGG + chr1_4:24629355-24629374 Msa0157390:CDS 40.0%
AATGGAATCCGTTGAAACTG+AGG + chr1_4:24629427-24629446 Msa0157390:CDS 40.0%
TGCTTGTGACCAAGTTTCAA+TGG + chr1_4:24629463-24629482 Msa0157390:CDS 40.0%
GTGATAGCACCATTGAAACT+TGG - chr1_4:24629475-24629494 None:intergenic 40.0%
TTTATGCCATGTGATGACCT+GGG - chr1_4:24629512-24629531 None:intergenic 40.0%
ATTTATGCCATGTGATGACC+TGG - chr1_4:24629513-24629532 None:intergenic 40.0%
TCATCAGTATCTTCTACCTC+TGG - chr1_4:24629575-24629594 None:intergenic 40.0%
TGCAAATCCTCATGATTCCA+TGG + chr1_4:24629616-24629635 Msa0157390:CDS 40.0%
TGTGCACAATATGGACATGA+TGG + chr1_4:24629719-24629738 Msa0157390:CDS 40.0%
GAATTGGAGGAAACAAATGG+AGG - chr1_4:24629888-24629907 None:intergenic 40.0%
AATCGTGTCGGAATCGTTTC+CGG - chr1_4:24624521-24624540 None:intergenic 45.0%
!! TTTTGAAGAGGTGGCTATGG+CGG - chr1_4:24624549-24624568 None:intergenic 45.0%
TTAAACTGGGACGAAACTGC+GGG + chr1_4:24625035-24625054 Msa0157390:intron 45.0%
!! TAGTAGATAGTGCCGGTTCA+TGG + chr1_4:24625080-24625099 Msa0157390:intron 45.0%
ACTGGTTGAACCATCTGGTT+CGG + chr1_4:24625107-24625126 Msa0157390:intron 45.0%
ACTGACAGCAGAATGTCAGA+AGG + chr1_4:24625631-24625650 Msa0157390:exon 45.0%
AAATGGCACGGATTTGTCTC+AGG + chr1_4:24625681-24625700 Msa0157390:CDS 45.0%
AATCCCTCCTTGTTACTCCT+CGG - chr1_4:24625897-24625916 None:intergenic 45.0%
AACCGTAAATCATCTCGCTG+TGG + chr1_4:24625988-24626007 Msa0157390:CDS 45.0%
AACCAGTAACACGCCATTCA+GGG - chr1_4:24626059-24626078 None:intergenic 45.0%
AAACCAGTAACACGCCATTC+AGG - chr1_4:24626060-24626079 None:intergenic 45.0%
CTAAAGCTGGAATGTCGGTA+AGG + chr1_4:24626184-24626203 Msa0157390:CDS 45.0%
GAGTACATTGCATGGTCCTA+CGG + chr1_4:24626414-24626433 Msa0157390:CDS 45.0%
!! TGAGGTATTTGGTGATGCTG+TGG + chr1_4:24626455-24626474 Msa0157390:CDS 45.0%
TGATACAACCTACCGAGTAG+AGG + chr1_4:24626482-24626501 Msa0157390:CDS 45.0%
ATGCTGTTGGGAATTTGGCT+TGG + chr1_4:24626513-24626532 Msa0157390:CDS 45.0%
!! GTTGGGAATTTGGCTTGGAT+TGG + chr1_4:24626518-24626537 Msa0157390:CDS 45.0%
CATACTTTCATCCCGCAGAA+GGG - chr1_4:24626577-24626596 None:intergenic 45.0%
TGGCTGTTACGTGTCTGATA+TGG + chr1_4:24626869-24626888 Msa0157390:intron 45.0%
TCTTCCTCTACCACCACATT+AGG + chr1_4:24626973-24626992 Msa0157390:intron 45.0%
CAGTAGCATGCAATCAACCA+TGG + chr1_4:24627023-24627042 Msa0157390:intron 45.0%
! AAGAACTCTTTGGAGAGCCA+TGG - chr1_4:24627043-24627062 None:intergenic 45.0%
CAAAGAGTTCTTCTCCTTCG+CGG + chr1_4:24627051-24627070 Msa0157390:intron 45.0%
! TTTAGTGAGGGTGTGAGTGA+GGG - chr1_4:24627123-24627142 None:intergenic 45.0%
! ATTTAGTGAGGGTGTGAGTG+AGG - chr1_4:24627124-24627143 None:intergenic 45.0%
GTACCCAACTTCAAACCCAA+AGG + chr1_4:24627255-24627274 Msa0157390:intron 45.0%
! TATGATGGCTTGTGGTTGCT+AGG + chr1_4:24627529-24627548 Msa0157390:intron 45.0%
! TGATGTGGACTAAACCGTGT+CGG - chr1_4:24627658-24627677 None:intergenic 45.0%
TGGCTGTTACAGATCTGATG+TGG - chr1_4:24627673-24627692 None:intergenic 45.0%
GAATCTAGTAGGCATTCCCT+AGG + chr1_4:24628210-24628229 Msa0157390:intron 45.0%
GCTTTCTTGGGCTTCATGAA+AGG + chr1_4:24628386-24628405 Msa0157390:CDS 45.0%
CTTGGGCTTCATGAAAGGAA+AGG + chr1_4:24628391-24628410 Msa0157390:CDS 45.0%
TTCTCTCCAAGTTCTCTGAC+TGG + chr1_4:24628510-24628529 Msa0157390:CDS 45.0%
AGTGGAAAGCTGAGTTCCAT+CGG + chr1_4:24628564-24628583 Msa0157390:CDS 45.0%
!! GTTCCATCGGCTCTACAATT+TGG + chr1_4:24628577-24628596 Msa0157390:CDS 45.0%
TGAAGAAAGCTGGAGGCAAA+TGG + chr1_4:24628616-24628635 Msa0157390:CDS 45.0%
TCTGGGCTTTACCATTCTTG+AGG + chr1_4:24628699-24628718 Msa0157390:CDS 45.0%
ATTGTGCACTCAAGAACCGT+TGG - chr1_4:24628784-24628803 None:intergenic 45.0%
CAGAAAGTCTGCCTGAAAAC+AGG + chr1_4:24629005-24629024 Msa0157390:CDS 45.0%
GAGTAAGTATAGTGGCAGCA+TGG - chr1_4:24629046-24629065 None:intergenic 45.0%
! TGGAGTTTGCTCAAGGCATA+AGG - chr1_4:24629068-24629087 None:intergenic 45.0%
TTATGCCTTGAGCAAACTCC+AGG + chr1_4:24629067-24629086 Msa0157390:CDS 45.0%
!! GCATCCTTTCTGGTTGATGA+AGG + chr1_4:24629116-24629135 Msa0157390:CDS 45.0%
ACAAACCAATGCTTCGCCAT+CGG - chr1_4:24629325-24629344 None:intergenic 45.0%
CCCTAGTTGCACCATGAAAA+TGG - chr1_4:24629358-24629377 None:intergenic 45.0%
! AAGGCGTTCCTCAGTTTCAA+CGG - chr1_4:24629438-24629457 None:intergenic 45.0%
CACGTGTTAAAACTCTTCCC+AGG + chr1_4:24629492-24629511 Msa0157390:CDS 45.0%
CCTAAAGCCATGGAATCATG+AGG - chr1_4:24629626-24629645 None:intergenic 45.0%
CCTCATGATTCCATGGCTTT+AGG + chr1_4:24629623-24629642 Msa0157390:CDS 45.0%
!! CTTTAGCTTGCCTAAAGCCA+TGG - chr1_4:24629636-24629655 None:intergenic 45.0%
!! CATGGCTTTAGGCAAGCTAA+AGG + chr1_4:24629634-24629653 Msa0157390:CDS 45.0%
TAGGCAAGCTAAAGGAGAGA+AGG + chr1_4:24629642-24629661 Msa0157390:CDS 45.0%
AGGCAAGCTAAAGGAGAGAA+GGG + chr1_4:24629643-24629662 Msa0157390:CDS 45.0%
TGACTCCAGCTTGACGATGA+TGG - chr1_4:24624480-24624499 None:intergenic 50.0%
ATCGTGTCGGAATCGTTTCC+GGG - chr1_4:24624520-24624539 None:intergenic 50.0%
!!! CGGTTTTGAAGAGGTGGCTA+TGG - chr1_4:24624552-24624571 None:intergenic 50.0%
!! GTGCCGGTTCATGGTTTAAC+TGG + chr1_4:24625089-24625108 Msa0157390:intron 50.0%
TCTTGGTATGGAGTTTGGCC+AGG + chr1_4:24625141-24625160 Msa0157390:intron 50.0%
GAGCCAAGTAAAGTTGGCCA+AGG + chr1_4:24625163-24625182 Msa0157390:intron 50.0%
GAGAACCCGAGTTCGAATCT+TGG - chr1_4:24625199-24625218 None:intergenic 50.0%
! AGGGATTTTACTTGCCACCG+CGG + chr1_4:24625910-24625929 Msa0157390:CDS 50.0%
!! TATTTTGGGGAAATCCGCCG+CGG - chr1_4:24625930-24625949 None:intergenic 50.0%
! AAACCTTCTGAAGATGGGGG+AGG + chr1_4:24625949-24625968 Msa0157390:CDS 50.0%
ACAGGCTCGAGTACATTGCA+TGG + chr1_4:24626406-24626425 Msa0157390:CDS 50.0%
GCATGTCATAGGCCTCTACT+CGG - chr1_4:24626497-24626516 None:intergenic 50.0%
AGAGGCCTATGACATGCTGT+TGG + chr1_4:24626500-24626519 Msa0157390:CDS 50.0%
GAGGCCTATGACATGCTGTT+GGG + chr1_4:24626501-24626520 Msa0157390:CDS 50.0%
GCATACTTTCATCCCGCAGA+AGG - chr1_4:24626578-24626597 None:intergenic 50.0%
AGATGAAGGGCCTAATGTGG+TGG - chr1_4:24626986-24627005 None:intergenic 50.0%
CGCGAAGGAGAAGAACTCTT+TGG - chr1_4:24627053-24627072 None:intergenic 50.0%
! TTAGTGAGGGTGTGAGTGAG+GGG - chr1_4:24627122-24627141 None:intergenic 50.0%
CTTGTGGTTGCTAGGAGGAA+TGG + chr1_4:24627537-24627556 Msa0157390:intron 50.0%
! GGAATGGTGCCGGATTTCAA+AGG + chr1_4:24627553-24627572 Msa0157390:intron 50.0%
TTGGGTCGCAATACGATGAG+TGG + chr1_4:24628546-24628565 Msa0157390:CDS 50.0%
AGAAAGCTGGAGGCAAATGG+TGG + chr1_4:24628619-24628638 Msa0157390:CDS 50.0%
! TCTTTTGCTTTGCTCCGGCT+CGG - chr1_4:24628971-24628990 None:intergenic 50.0%
GTGGCAGCATGGGATTCTAT+AGG - chr1_4:24629035-24629054 None:intergenic 50.0%
! CTCTTCCTGGAGTTTGCTCA+AGG - chr1_4:24629075-24629094 None:intergenic 50.0%
AGACACCATTCTCAGACCGA+TGG + chr1_4:24629152-24629171 Msa0157390:CDS 50.0%
AACCTCCATCGGTCTGAGAA+TGG - chr1_4:24629160-24629179 None:intergenic 50.0%
CAGCTGATGTGCTCTTGACA+AGG - chr1_4:24629200-24629219 None:intergenic 50.0%
CAACTAGGGATCAGCCTGAA+AGG + chr1_4:24629369-24629388 Msa0157390:CDS 50.0%
ACTCTTCCCAGGTCATCACA+TGG + chr1_4:24629503-24629522 Msa0157390:CDS 50.0%
GGATTCATTGATCCTGCCAG+AGG + chr1_4:24629556-24629575 Msa0157390:CDS 50.0%
CAGTATCTTCTACCTCTGGC+AGG - chr1_4:24629571-24629590 None:intergenic 50.0%
AAGGAGAGAAGGGCAAGAGA+TGG + chr1_4:24629653-24629672 Msa0157390:CDS 50.0%
CAGCTCCATCATCGTCAAGC+TGG + chr1_4:24624472-24624491 Msa0157390:five_prime_UTR 55.0%
ACACGCAGCAGTGAACTTCC+CGG + chr1_4:24624499-24624518 Msa0157390:five_prime_UTR 55.0%
ATGGCGGCCGTAAATCGTGT+CGG - chr1_4:24624533-24624552 None:intergenic 55.0%
GGCCAGGAGCCAAGTAAAGT+TGG + chr1_4:24625157-24625176 Msa0157390:intron 55.0%
GGCCAACTTTACTTGGCTCC+TGG - chr1_4:24625162-24625181 None:intergenic 55.0%
GGATGACATTGGCACTGTCG+AGG + chr1_4:24625702-24625721 Msa0157390:CDS 55.0%
TTGGCCGAGGAGTAACAAGG+AGG + chr1_4:24625890-24625909 Msa0157390:CDS 55.0%
TGGCCGAGGAGTAACAAGGA+GGG + chr1_4:24625891-24625910 Msa0157390:CDS 55.0%
! GATTTTACTTGCCACCGCGG+CGG + chr1_4:24625913-24625932 Msa0157390:CDS 55.0%
GTCCCTGAATGGCGTGTTAC+TGG + chr1_4:24626054-24626073 Msa0157390:CDS 55.0%
GTCATAGGCCTCTACTCGGT+AGG - chr1_4:24626493-24626512 None:intergenic 55.0%
GCTTTAGTTGCGCCCTTCTG+CGG + chr1_4:24626562-24626581 Msa0157390:CDS 55.0%
CTTTAGTTGCGCCCTTCTGC+GGG + chr1_4:24626563-24626582 Msa0157390:CDS 55.0%
AGGGCCTAATGTGGTGGTAG+AGG - chr1_4:24626980-24626999 None:intergenic 55.0%
TCTCCTTCGCGGTGACAACA+TGG + chr1_4:24627062-24627081 Msa0157390:intron 55.0%
CTTCCATGTTGTCACCGCGA+AGG - chr1_4:24627068-24627087 None:intergenic 55.0%
CTTCGCGGTGACAACATGGA+AGG + chr1_4:24627066-24627085 Msa0157390:intron 55.0%
! TAGTGAGGGTGTGAGTGAGG+GGG - chr1_4:24627121-24627140 None:intergenic 55.0%
! GATGGCTTGTGGTTGCTAGG+AGG + chr1_4:24627532-24627551 Msa0157390:intron 55.0%
GTTGCTAGGAGGAATGGTGC+CGG + chr1_4:24627543-24627562 Msa0157390:intron 55.0%
GTGGAAAGGACCCGAGTCAT+CGG + chr1_4:24628068-24628087 Msa0157390:intron 55.0%
TGGAAAGGACCCGAGTCATC+GGG + chr1_4:24628069-24628088 Msa0157390:intron 55.0%
! GGACTCGGTCTGACATGTAC+TGG - chr1_4:24628747-24628766 None:intergenic 55.0%
! GTGCTGCAACTAGCTCTTCC+TGG - chr1_4:24629088-24629107 None:intergenic 55.0%
CACCATTCTCAGACCGATGG+AGG + chr1_4:24629155-24629174 Msa0157390:CDS 55.0%
CCAATGCTTCGCCATCGGAT+CGG - chr1_4:24629320-24629339 None:intergenic 55.0%
ATTAGACGACACCGCACCCG+AGG + chr1_4:24625856-24625875 Msa0157390:CDS 60.0%
TTAGACGACACCGCACCCGA+GGG + chr1_4:24625857-24625876 Msa0157390:CDS 60.0%
ACCGCACCCGAGGGAAAGAT+GGG + chr1_4:24625866-24625885 Msa0157390:CDS 60.0%
ACCCGAGGGAAAGATGGGGT+TGG + chr1_4:24625871-24625890 Msa0157390:CDS 60.0%
GCCAACCCCATCTTTCCCTC+GGG - chr1_4:24625875-24625894 None:intergenic 60.0%
GGCCAACCCCATCTTTCCCT+CGG - chr1_4:24625876-24625895 None:intergenic 60.0%
!! GGGTTGGCCGAGGAGTAACA+AGG + chr1_4:24625887-24625906 Msa0157390:CDS 60.0%
CCTCCTCCCCCATCTTCAGA+AGG - chr1_4:24625955-24625974 None:intergenic 60.0%
! CCTTCTGAAGATGGGGGAGG+AGG + chr1_4:24625952-24625971 Msa0157390:CDS 60.0%
! GGGGAGGAGGAAAAGCGCAA+AGG + chr1_4:24625965-24625984 Msa0157390:CDS 60.0%
! TGGACTAAACCGTGTCGGCG+TGG - chr1_4:24627653-24627672 None:intergenic 60.0%
GGAAAGGACCCGAGTCATCG+GGG + chr1_4:24628070-24628089 Msa0157390:intron 60.0%
ACCACATGCCCCGATGACTC+GGG - chr1_4:24628081-24628100 None:intergenic 60.0%
GACCACATGCCCCGATGACT+CGG - chr1_4:24628082-24628101 None:intergenic 60.0%
CCGATCCGATGGCGAAGCAT+TGG + chr1_4:24629317-24629336 Msa0157390:CDS 60.0%
CACCGCACCCGAGGGAAAGA+TGG + chr1_4:24625865-24625884 Msa0157390:CDS 65.0%
CCCCATCTTTCCCTCGGGTG+CGG - chr1_4:24625870-24625889 None:intergenic 65.0%
CCGCACCCGAGGGAAAGATG+GGG + chr1_4:24625867-24625886 Msa0157390:CDS 65.0%
!! GGGAAAGATGGGGTTGGCCG+AGG + chr1_4:24625877-24625896 Msa0157390:CDS 65.0%
TTTGGGGAAATCCGCCGCGG+TGG - chr1_4:24625927-24625946 None:intergenic 65.0%
! GAGGGTGTGAGTGAGGGGGT+TGG - chr1_4:24627117-24627136 None:intergenic 65.0%
ATGGGGAAGCCACGCCGACA+CGG + chr1_4:24627641-24627660 Msa0157390:intron 65.0%
ACCCGAGTCATCGGGGCATG+TGG + chr1_4:24628077-24628096 Msa0157390:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 24624461 24630005 24624461 ID=Msa0157390;Name=Msa0157390
chr1_4 mRNA 24624461 24630005 24624461 ID=Msa0157390-mRNA-1;Parent=Msa0157390;Name=Msa0157390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=223|1|1|1|0.66|0.5|4|203|760
chr1_4 exon 24624461 24624637 24624461 ID=Msa0157390-mRNA-1:exon:8471;Parent=Msa0157390-mRNA-1
chr1_4 exon 24625597 24626620 24625597 ID=Msa0157390-mRNA-1:exon:8472;Parent=Msa0157390-mRNA-1
chr1_4 exon 24628386 24628829 24628386 ID=Msa0157390-mRNA-1:exon:8473;Parent=Msa0157390-mRNA-1
chr1_4 exon 24628942 24630005 24628942 ID=Msa0157390-mRNA-1:exon:8474;Parent=Msa0157390-mRNA-1
chr1_4 five_prime_UTR 24624461 24624637 24624461 ID=Msa0157390-mRNA-1:five_prime_utr;Parent=Msa0157390-mRNA-1
chr1_4 five_prime_UTR 24625597 24625642 24625597 ID=Msa0157390-mRNA-1:five_prime_utr;Parent=Msa0157390-mRNA-1
chr1_4 CDS 24625643 24626620 24625643 ID=Msa0157390-mRNA-1:cds;Parent=Msa0157390-mRNA-1
chr1_4 CDS 24628386 24628829 24628386 ID=Msa0157390-mRNA-1:cds;Parent=Msa0157390-mRNA-1
chr1_4 CDS 24628942 24629802 24628942 ID=Msa0157390-mRNA-1:cds;Parent=Msa0157390-mRNA-1
chr1_4 three_prime_UTR 24629803 24630005 24629803 ID=Msa0157390-mRNA-1:three_prime_utr;Parent=Msa0157390-mRNA-1
Gene Sequence

>Msa0157390

ATGTCAGAAGGAGCCAGTTTTGTGTTAGAATCATCCGAAAATGGCACGGATTTGTCTCAGGATGACATTGGCACTGTCGAGGAAACCCCAGAAGAAACAATTCTGTCAAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCTTATGAATTTTATTGCAGTTTTGCTAAACAATTTGGCTTTTCTATTAGACGACACCGCACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTAACAAGGAGGGATTTTACTTGCCACCGCGGCGGATTTCCCCAAAATAAACCTTCTGAAGATGGGGGAGGAGGAAAAGCGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGTCAAGCGTACATGCGTATTGTGAAAAAAGCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTATTCAATCACACTGTCCGATATCTCCTGATGATAAGAGCCGTATATGCATGTTTGCTAAAGCTGGAATGTCGGTAAGGCAAATGTTAAGATTAATGGAGCTAGAAAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTTAGAAACGTGGATAAAGATAATGATGCTATTGATCTGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGAATTCAAGATAGATAATAATAACAGGCTCGAGTACATTGCATGGTCCTACGGCTCATCAATTCAATCATATGAGGTATTTGGTGATGCTGTGGTTTTTGATACAACCTACCGAGTAGAGGCCTATGACATGCTGTTGGGAATTTGGCTTGGATTGGACAATAATGGAGTGATATGTTGCTTTAGTTGCGCCCTTCTGCGGGATGAAAGTATGCCGTCTTTTTCATGGGCATTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATACTGACTGATCATAACACATGGCTGAAAGAAGCTATTGCTGTTGAAATGCCCGAAAGTAAACATGCCTTTTGTATATGGCATATTCTCTCCAAGTTCTCTGACTGGTTTTATTTACTTCTTGGGTCGCAATACGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTTGAAGAAAGCTGGAGGCAAATGGTGGATAAATATGGACTTAATGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTCTGGGCTTTACCATTCTTGAGGCGATATTTCTTTGCAGGATTAACCAGTACATGTCAGACCGAGTCCATTAACGTTTTCATCCAACGGTTCTTGAGTGCACAATCTCAACCAGAACGTTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAATGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAATGCAGAAAGTCTGCCTGAAAACAGGTTCACCTATAGAATCCCATGCTGCCACTATACTTACTCCTTATGCCTTGAGCAAACTCCAGGAAGAGCTAGTTGCAGCACCTCAATATGCATCCTTTCTGGTTGATGAAGGTTGTTTTCAGGTTAGACACCATTCTCAGACCGATGGAGGTTGCAAAGTGTTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCGTCTATTTGAGTTTTCAGGCATCTTATGTAAACATGTGCTACGCGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTACCGATCCGATGGCGAAGCATTGGTTTGTCTTCTTTTAACCATTTTCATGGTGCAACTAGGGATCAGCCTGAAAGGATACAATATTTGGAATCTTTGATTTCAACACTTCTAATGGAATCCGTTGAAACTGAGGAACGCCTTGATGTTGCTTGTGACCAAGTTTCAATGGTGCTATCACGTGTTAAAACTCTTCCCAGGTCATCACATGGCATAAATGATATTGCATTTAGTTATGCATCGGATTCATTGATCCTGCCAGAGGTAGAAGATACTGATGAAATGATTCATGGTTTTACAATTGCAAATCCTCATGATTCCATGGCTTTAGGCAAGCTAAAGGAGAGAAGGGCAAGAGATGGAGTTGATCTCAGTAGAAAACGTAGGCAGTTCTCATCACCATTATGTGCACAATATGGACATGATGGATCTGATTGCTCAATAATGGCTGATGATAATATGAGTGAAGATGCATTAGGGTATATGTAG
Protein sequence

>Msa0157390

MSEGASFVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKPSEDGGGGKAQRNRKSSRCGCQAYMRIVKKADFDVPEWRVTGFRNIHNHELLKSNEVRLIQSHCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDKDNDAIDLIAMCKRLKDENHNFKYEFKIDNNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGLDNNGVICCFSCALLRDESMPSFSWALKAFLGFMKGKAPQTILTDHNTWLKEAIAVEMPESKHAFCIWHILSKFSDWFYLLLGSQYDEWKAEFHRLYNLEMVEDFEESWRQMVDKYGLNANKHIISLYSLRTFWALPFLRRYFFAGLTSTCQTESINVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKMQKVCLKTGSPIESHAATILTPYALSKLQEELVAAPQYASFLVDEGCFQVRHHSQTDGGCKVFWLPCQEHISCSCRLFEFSGILCKHVLRVMSTNNCFHIPDQYLPIRWRSIGLSSFNHFHGATRDQPERIQYLESLISTLLMESVETEERLDVACDQVSMVLSRVKTLPRSSHGINDIAFSYASDSLILPEVEDTDEMIHGFTIANPHDSMALGKLKERRARDGVDLSRKRRQFSSPLCAQYGHDGSDCSIMADDNMSEDALGYM*