Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0157580 | XP_039685680.1 | 85.875 | 800 | 66 | 3 | 1 | 753 | 1 | 800 | 0.0 | 1400 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0157580 | sp|Q9SZL8|FRS5_ARATH | 26.036 | 603 | 395 | 13 | 50 | 638 | 72 | 637 | 9.08e-58 | 214 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0157580 | D3YBB9 | 73.951 | 810 | 143 | 6 | 14 | 771 | 54 | 847 | 0.0 | 1209 |
Gene ID | Type | Classification |
---|---|---|
Msa0157580 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0157580 | MtrunA17_Chr2g0324011 | 30.348 | 603 | 365 | 13 | 52 | 638 | 8 | 571 | 5.08e-91 | 297 |
Msa0157580 | MtrunA17_Chr3g0082121 | 29.331 | 658 | 400 | 15 | 57 | 700 | 49 | 655 | 1.01e-88 | 294 |
Msa0157580 | MtrunA17_Chr3g0088371 | 80.368 | 163 | 29 | 1 | 619 | 778 | 29 | 191 | 6.75e-83 | 262 |
Msa0157580 | MtrunA17_Chr1g0203721 | 25.946 | 740 | 480 | 17 | 3 | 716 | 8 | 705 | 8.29e-70 | 246 |
Msa0157580 | MtrunA17_Chr1g0202341 | 29.195 | 596 | 376 | 12 | 50 | 635 | 50 | 609 | 4.97e-69 | 240 |
Msa0157580 | MtrunA17_Chr8g0363841 | 27.907 | 602 | 372 | 14 | 56 | 638 | 22 | 580 | 1.04e-65 | 231 |
Msa0157580 | MtrunA17_Chr1g0164591 | 34.375 | 320 | 195 | 4 | 147 | 464 | 1 | 307 | 4.61e-63 | 214 |
Msa0157580 | MtrunA17_Chr5g0448761 | 25.331 | 679 | 457 | 15 | 50 | 714 | 59 | 701 | 1.98e-59 | 215 |
Msa0157580 | MtrunA17_Chr2g0296781 | 29.336 | 467 | 291 | 8 | 55 | 515 | 1 | 434 | 2.70e-58 | 211 |
Msa0157580 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 1.32e-56 | 203 |
Msa0157580 | MtrunA17_Chr6g0458391 | 26.190 | 588 | 372 | 14 | 57 | 635 | 231 | 765 | 4.77e-55 | 202 |
Msa0157580 | MtrunA17_Chr6g0477261 | 33.022 | 321 | 210 | 2 | 196 | 515 | 7 | 323 | 1.03e-53 | 197 |
Msa0157580 | MtrunA17_Chr5g0441581 | 25.802 | 655 | 385 | 19 | 39 | 662 | 25 | 609 | 2.11e-53 | 197 |
Msa0157580 | MtrunA17_Chr7g0258861 | 34.615 | 312 | 180 | 6 | 46 | 352 | 2 | 294 | 1.22e-52 | 185 |
Msa0157580 | MtrunA17_Chr2g0287651 | 26.998 | 463 | 310 | 7 | 55 | 515 | 79 | 515 | 2.12e-51 | 193 |
Msa0157580 | MtrunA17_Chr1g0198761 | 28.681 | 523 | 331 | 14 | 56 | 564 | 52 | 546 | 5.96e-49 | 185 |
Msa0157580 | MtrunA17_Chr1g0203051 | 26.136 | 440 | 302 | 5 | 101 | 539 | 124 | 541 | 7.06e-48 | 180 |
Msa0157580 | MtrunA17_Chr5g0440451 | 24.526 | 738 | 441 | 20 | 1 | 696 | 1 | 664 | 9.92e-48 | 182 |
Msa0157580 | MtrunA17_Chr3g0118611 | 27.253 | 466 | 310 | 8 | 237 | 692 | 111 | 557 | 5.79e-47 | 179 |
Msa0157580 | MtrunA17_Chr1g0196541 | 26.509 | 464 | 308 | 8 | 55 | 515 | 1 | 434 | 2.10e-46 | 177 |
Msa0157580 | MtrunA17_Chr2g0329031 | 25.347 | 576 | 386 | 15 | 133 | 696 | 75 | 618 | 1.37e-44 | 171 |
Msa0157580 | MtrunA17_Chr2g0291591 | 26.346 | 520 | 318 | 16 | 14 | 515 | 29 | 501 | 5.98e-43 | 164 |
Msa0157580 | MtrunA17_Chr2g0276841 | 27.092 | 502 | 321 | 16 | 65 | 552 | 84 | 554 | 1.92e-42 | 165 |
Msa0157580 | MtrunA17_Chr6g0475591 | 93.151 | 73 | 5 | 0 | 204 | 276 | 1 | 73 | 2.07e-41 | 145 |
Msa0157580 | MtrunA17_Chr3g0080351 | 23.994 | 696 | 446 | 18 | 15 | 691 | 44 | 675 | 6.25e-41 | 161 |
Msa0157580 | MtrunA17_Chr5g0431001 | 27.354 | 446 | 289 | 12 | 56 | 489 | 66 | 488 | 2.54e-40 | 155 |
Msa0157580 | MtrunA17_Chr2g0290391 | 26.281 | 605 | 374 | 19 | 54 | 633 | 54 | 611 | 2.63e-40 | 158 |
Msa0157580 | MtrunA17_Chr2g0287061 | 24.407 | 590 | 364 | 16 | 57 | 638 | 189 | 704 | 7.10e-40 | 158 |
Msa0157580 | MtrunA17_Chr1g0207551 | 25.000 | 496 | 330 | 11 | 22 | 510 | 9 | 469 | 1.77e-38 | 153 |
Msa0157580 | MtrunA17_Chr5g0448511 | 24.882 | 422 | 280 | 8 | 232 | 638 | 1 | 400 | 1.40e-37 | 148 |
Msa0157580 | MtrunA17_Chr2g0291581 | 24.777 | 448 | 298 | 7 | 54 | 500 | 74 | 483 | 1.83e-34 | 140 |
Msa0157580 | MtrunA17_Chr2g0294841 | 27.333 | 450 | 284 | 15 | 57 | 491 | 51 | 472 | 1.31e-33 | 138 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0157580 | AT4G38180.1 | 26.036 | 603 | 395 | 13 | 50 | 638 | 72 | 637 | 9.23e-59 | 214 |
Msa0157580 | AT2G27110.3 | 25.360 | 556 | 379 | 13 | 229 | 770 | 36 | 569 | 3.18e-46 | 176 |
Msa0157580 | AT2G27110.2 | 25.360 | 556 | 379 | 13 | 229 | 770 | 181 | 714 | 7.22e-46 | 177 |
Msa0157580 | AT2G27110.1 | 25.360 | 556 | 379 | 13 | 229 | 770 | 181 | 714 | 7.22e-46 | 177 |
Msa0157580 | AT3G06250.2 | 23.920 | 602 | 376 | 14 | 39 | 634 | 178 | 703 | 7.89e-42 | 164 |
Msa0157580 | AT3G06250.1 | 23.920 | 602 | 376 | 14 | 39 | 634 | 178 | 703 | 7.89e-42 | 164 |
Msa0157580 | AT3G06250.3 | 23.920 | 602 | 376 | 14 | 39 | 634 | 178 | 703 | 7.89e-42 | 164 |
Msa0157580 | AT4G15090.1 | 25.743 | 404 | 290 | 6 | 139 | 539 | 121 | 517 | 1.19e-39 | 157 |
Msa0157580 | AT4G15090.5 | 25.743 | 404 | 290 | 6 | 139 | 539 | 121 | 517 | 1.19e-39 | 157 |
Msa0157580 | AT4G15090.3 | 25.743 | 404 | 290 | 6 | 139 | 539 | 121 | 517 | 1.19e-39 | 157 |
Msa0157580 | AT4G15090.2 | 25.743 | 404 | 290 | 6 | 139 | 539 | 121 | 517 | 1.19e-39 | 157 |
Msa0157580 | AT4G15090.4 | 25.743 | 404 | 290 | 6 | 139 | 539 | 121 | 517 | 1.19e-39 | 157 |
Msa0157580 | AT3G22170.2 | 21.914 | 648 | 437 | 14 | 48 | 681 | 67 | 659 | 6.86e-39 | 155 |
Msa0157580 | AT3G22170.1 | 21.914 | 648 | 437 | 14 | 48 | 681 | 67 | 659 | 6.86e-39 | 155 |
Msa0157580 | AT1G76320.3 | 22.653 | 671 | 449 | 17 | 57 | 715 | 3 | 615 | 1.02e-38 | 154 |
Msa0157580 | AT1G76320.1 | 22.585 | 673 | 451 | 17 | 55 | 715 | 1 | 615 | 1.47e-38 | 154 |
Msa0157580 | AT1G76320.4 | 22.585 | 673 | 451 | 17 | 55 | 715 | 1 | 615 | 1.47e-38 | 154 |
Msa0157580 | AT1G76320.2 | 22.585 | 673 | 451 | 17 | 55 | 715 | 1 | 615 | 1.56e-38 | 154 |
Msa0157580 | AT1G10240.2 | 25.549 | 501 | 330 | 15 | 65 | 552 | 62 | 532 | 5.11e-38 | 151 |
Msa0157580 | AT1G10240.1 | 25.549 | 501 | 330 | 15 | 65 | 552 | 62 | 532 | 5.11e-38 | 151 |
Msa0157580 | AT4G38170.1 | 23.593 | 462 | 303 | 11 | 251 | 692 | 24 | 455 | 1.36e-37 | 149 |
Msa0157580 | AT5G18960.2 | 23.902 | 615 | 367 | 21 | 37 | 634 | 197 | 727 | 2.68e-37 | 150 |
Msa0157580 | AT5G18960.1 | 23.902 | 615 | 367 | 21 | 37 | 634 | 197 | 727 | 2.68e-37 | 150 |
Msa0157580 | AT5G28530.1 | 25.048 | 519 | 342 | 13 | 56 | 556 | 60 | 549 | 1.77e-35 | 144 |
Msa0157580 | AT5G28530.3 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 3.34e-35 | 143 |
Msa0157580 | AT5G28530.2 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 3.34e-35 | 143 |
Msa0157580 | AT1G80010.1 | 24.875 | 599 | 392 | 19 | 57 | 635 | 101 | 661 | 1.21e-34 | 141 |
Msa0157580 | AT2G32250.5 | 21.831 | 710 | 448 | 20 | 34 | 728 | 23 | 640 | 2.65e-31 | 131 |
Msa0157580 | AT2G32250.6 | 21.831 | 710 | 448 | 20 | 34 | 728 | 23 | 640 | 3.08e-31 | 131 |
Msa0157580 | AT2G32250.1 | 21.831 | 710 | 448 | 20 | 34 | 728 | 23 | 640 | 3.08e-31 | 131 |
Msa0157580 | AT2G32250.3 | 21.831 | 710 | 448 | 20 | 34 | 728 | 23 | 640 | 3.08e-31 | 131 |
Msa0157580 | AT2G32250.2 | 21.831 | 710 | 448 | 20 | 34 | 728 | 23 | 640 | 3.85e-31 | 131 |
Msa0157580 | AT2G32250.4 | 21.831 | 710 | 448 | 20 | 34 | 728 | 23 | 640 | 3.85e-31 | 131 |
Msa0157580 | AT2G32250.8 | 21.834 | 687 | 432 | 19 | 57 | 728 | 3 | 599 | 5.17e-31 | 130 |
Msa0157580 | AT2G32250.7 | 21.834 | 687 | 432 | 19 | 57 | 728 | 3 | 599 | 6.09e-31 | 130 |
Msa0157580 | AT4G19990.3 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 4.58e-30 | 127 |
Msa0157580 | AT4G19990.4 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 4.58e-30 | 127 |
Msa0157580 | AT4G19990.5 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 5.45e-30 | 127 |
Msa0157580 | AT4G19990.7 | 24.664 | 446 | 287 | 11 | 57 | 499 | 41 | 440 | 5.84e-30 | 127 |
Msa0157580 | AT4G19990.6 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 6.75e-30 | 127 |
Msa0157580 | AT4G19990.2 | 24.664 | 446 | 287 | 11 | 57 | 499 | 27 | 426 | 6.75e-30 | 127 |
Msa0157580 | AT1G52520.1 | 22.804 | 535 | 356 | 14 | 57 | 573 | 91 | 586 | 1.76e-29 | 125 |
Msa0157580 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 235 | 499 | 106 | 369 | 1.89e-29 | 125 |
Msa0157580 | AT5G28530.4 | 22.004 | 509 | 307 | 15 | 56 | 556 | 60 | 486 | 9.84e-17 | 85.1 |
Msa0157580 | AT5G28530.5 | 23.434 | 431 | 243 | 14 | 56 | 478 | 60 | 411 | 1.78e-16 | 84.0 |
Find 105 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 1_4:-25332073 | Msa0157580:CDS |
AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 1_4:+25331279 | None:intergenic |
TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 1_4:-25332663 | Msa0157580:intron |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1_4:-25332115 | Msa0157580:CDS |
AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 1_4:+25332536 | None:intergenic |
TTTAGTCTTTCAATCTATTA+AGG | 0.222289 | 1_4:-25333880 | Msa0157580:CDS |
GAGAACGTCTTATGAAGTTT+TGG | 0.251408 | 1_4:-25333430 | Msa0157580:CDS |
TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 1_4:+25331285 | None:intergenic |
TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 1_4:+25333696 | None:intergenic |
CGATCATGATCTTCAAAACT+TGG | 0.305304 | 1_4:+25331775 | None:intergenic |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1_4:+25333505 | None:intergenic |
GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 1_4:-25331824 | Msa0157580:CDS |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1_4:-25333189 | Msa0157580:CDS |
GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 1_4:+25332259 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1_4:+25333139 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 1_4:+25332650 | None:intergenic |
CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 1_4:-25331441 | Msa0157580:CDS |
TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 1_4:+25331217 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 1_4:-25333132 | Msa0157580:intron |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1_4:-25333140 | Msa0157580:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 1_4:+25331303 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1_4:-25331941 | Msa0157580:CDS |
GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 1_4:-25332290 | Msa0157580:CDS |
GAGGAGTTGCTTATTTCTAA+AGG | 0.424346 | 1_4:-25331408 | Msa0157580:CDS |
CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 1_4:-25333744 | Msa0157580:CDS |
AAAACACCTGGAAAACTATT+CGG | 0.428349 | 1_4:+25332477 | None:intergenic |
GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 1_4:-25331342 | Msa0157580:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1_4:-25333492 | Msa0157580:CDS |
TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 1_4:+25331533 | None:intergenic |
TTTAAGTCTGAAAACTGAAA+AGG | 0.436258 | 1_4:+25333378 | None:intergenic |
TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 1_4:+25333907 | None:intergenic |
TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 1_4:+25333906 | None:intergenic |
TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 1_4:+25331311 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1_4:-25333627 | Msa0157580:CDS |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1_4:-25332241 | Msa0157580:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 1_4:-25333575 | Msa0157580:CDS |
TTGAAGACTTAGATGGTGTC+GGG | 0.455926 | 1_4:+25331373 | None:intergenic |
CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 1_4:-25331975 | Msa0157580:CDS |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 1_4:-25333462 | Msa0157580:CDS |
GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 1_4:+25332021 | None:intergenic |
ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 1_4:+25333684 | None:intergenic |
GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 1_4:-25333707 | Msa0157580:CDS |
CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 1_4:+25331624 | None:intergenic |
GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 1_4:-25331227 | Msa0157580:CDS |
ATCATGATCGATTTGATGAA+AGG | 0.476999 | 1_4:-25331762 | Msa0157580:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1_4:-25332242 | Msa0157580:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1_4:+25331939 | None:intergenic |
ATTTCTAAAGGTATTCGTAC+AGG | 0.485637 | 1_4:-25331396 | Msa0157580:CDS |
GATCATGATCTTCAAAACTT+GGG | 0.487945 | 1_4:+25331776 | None:intergenic |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1_4:-25331925 | Msa0157580:CDS |
GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 1_4:+25331557 | None:intergenic |
CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 1_4:-25331341 | Msa0157580:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1_4:-25332101 | Msa0157580:CDS |
CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 1_4:-25333908 | Msa0157580:CDS |
TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 1_4:+25331979 | None:intergenic |
TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 1_4:+25331312 | None:intergenic |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 1_4:+25333633 | None:intergenic |
AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 1_4:-25333610 | Msa0157580:CDS |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1_4:-25332082 | Msa0157580:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 1_4:-25333778 | Msa0157580:CDS |
CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 1_4:+25333522 | None:intergenic |
GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 1_4:+25331980 | None:intergenic |
GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 1_4:+25333947 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 1_4:-25333733 | Msa0157580:CDS |
TAAGATATATAGATGGGATG+TGG | 0.528498 | 1_4:-25333568 | Msa0157580:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1_4:+25331944 | None:intergenic |
TTTGAAGACTTAGATGGTGT+CGG | 0.532725 | 1_4:+25331372 | None:intergenic |
TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 1_4:-25332451 | Msa0157580:CDS |
GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 1_4:+25333534 | None:intergenic |
CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 1_4:+25333908 | None:intergenic |
TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 1_4:+25333946 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1_4:-25331924 | Msa0157580:CDS |
AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 1_4:+25332138 | None:intergenic |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1_4:-25333732 | Msa0157580:CDS |
AACACAATAACGCACTAGCC+TGG | 0.552106 | 1_4:+25332505 | None:intergenic |
CTGAAATCGACCGTCAATGT+TGG | 0.564487 | 1_4:-25331567 | Msa0157580:CDS |
GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 1_4:-25332287 | Msa0157580:CDS |
TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 1_4:-25331357 | Msa0157580:CDS |
GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 1_4:+25332020 | None:intergenic |
AGTTCTTAGAAGACAATACC+TGG | 0.571336 | 1_4:-25331642 | Msa0157580:intron |
ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 1_4:+25331777 | None:intergenic |
TTTACAAACTCAATAACCTG+TGG | 0.584554 | 1_4:+25333669 | None:intergenic |
ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 1_4:-25332023 | Msa0157580:CDS |
CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 1_4:-25332254 | Msa0157580:CDS |
TATGATGATGCTGATAATGA+CGG | 0.599988 | 1_4:-25331847 | Msa0157580:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 1_4:-25333574 | Msa0157580:CDS |
TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 1_4:-25333987 | Msa0157580:CDS |
TCCAAAACATCAACATTCGA+AGG | 0.607058 | 1_4:+25331823 | None:intergenic |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1_4:-25331938 | Msa0157580:CDS |
GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 1_4:-25333685 | Msa0157580:CDS |
ATGATGATGCTGATAATGAC+GGG | 0.620534 | 1_4:-25331846 | Msa0157580:CDS |
ACATCAACTTCATCTGAGAG+TGG | 0.622661 | 1_4:-25334032 | Msa0157580:CDS |
TGAAGCTTTATCAGTGATTG+TGG | 0.633753 | 1_4:-25331184 | Msa0157580:CDS |
TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 1_4:-25331340 | Msa0157580:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1_4:-25332100 | Msa0157580:CDS |
TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 1_4:+25332525 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 1_4:+25331582 | None:intergenic |
GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 1_4:+25332281 | None:intergenic |
TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 1_4:+25332133 | None:intergenic |
TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 1_4:+25331308 | None:intergenic |
AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 1_4:+25331981 | None:intergenic |
TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 1_4:+25333948 | None:intergenic |
AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 1_4:+25332285 | None:intergenic |
AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 1_4:+25331999 | None:intergenic |
ACAGACGATTTATACAGACC+AGG | 0.720235 | 1_4:-25332523 | Msa0157580:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGATGAGTTAAATAATT+TGG | - | chr1_4:25332832-25332851 | Msa0157580:intron | 15.0% |
!!! | ATGATGATAAATTATTTTGA+TGG | - | chr1_4:25332902-25332921 | Msa0157580:intron | 15.0% |
!!! | TTTAGTCTTTCAATCTATTA+AGG | - | chr1_4:25331334-25331353 | Msa0157580:CDS | 20.0% |
!!! | ATAACACTGAATTTTCTATT+AGG | - | chr1_4:25331387-25331406 | Msa0157580:CDS | 20.0% |
!! | ATGTGTATAAGATATATAGA+TGG | - | chr1_4:25331639-25331658 | Msa0157580:intron | 20.0% |
!! | TGTGTATAAGATATATAGAT+GGG | - | chr1_4:25331640-25331659 | Msa0157580:intron | 20.0% |
!! | TGAATATCATAGTAAAAAGA+TGG | + | chr1_4:25331953-25331972 | None:intergenic | 20.0% |
!!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr1_4:25332143-25332162 | Msa0157580:CDS | 20.0% |
!! | ACATACTTATTAGAATACTT+AGG | - | chr1_4:25332373-25332392 | Msa0157580:CDS | 20.0% |
!!! | TTCTTATAATTTGTGATTAC+AGG | - | chr1_4:25332436-25332455 | Msa0157580:CDS | 20.0% |
!!! | AATCAGATTTTGACTATAAT+TGG | - | chr1_4:25332873-25332892 | Msa0157580:intron | 20.0% |
!!! | ATCAGATTTTGACTATAATT+GGG | - | chr1_4:25332874-25332893 | Msa0157580:intron | 20.0% |
!!! | TGATAAATTATTTTGATGGA+AGG | - | chr1_4:25332906-25332925 | Msa0157580:intron | 20.0% |
!! | AAGGAGATTGAAGATTTTTA+TGG | - | chr1_4:25331353-25331372 | Msa0157580:CDS | 25.0% |
! | ACAAAACAAGAAATCTGATA+AGG | - | chr1_4:25331436-25331455 | Msa0157580:CDS | 25.0% |
! | TTTAAGTCTGAAAACTGAAA+AGG | + | chr1_4:25331839-25331858 | None:intergenic | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1_4:25331987-25332006 | Msa0157580:CDS | 25.0% |
! | CAACTAGATTATTCTCTATT+CGG | - | chr1_4:25332025-25332044 | Msa0157580:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | - | chr1_4:25332074-25332093 | Msa0157580:CDS | 25.0% |
! | AGTAAAAAACACTAACCTAA+TGG | + | chr1_4:25332100-25332119 | None:intergenic | 25.0% |
! | TCTTACTTATTTGAACTACA+CGG | - | chr1_4:25332219-25332238 | Msa0157580:CDS | 25.0% |
!! | TTTAACCATGTTGTTTGTTT+AGG | - | chr1_4:25332243-25332262 | Msa0157580:CDS | 25.0% |
!! | TTAACCATGTTGTTTGTTTA+GGG | - | chr1_4:25332244-25332263 | Msa0157580:CDS | 25.0% |
! | CAAACTTAAATGATGTTGAT+TGG | - | chr1_4:25332297-25332316 | Msa0157580:CDS | 25.0% |
!!! | ATTTATATTTTGAACTGCCT+AGG | - | chr1_4:25332321-25332340 | Msa0157580:CDS | 25.0% |
!! | TGTTGTATTTTGTTCTGATA+TGG | - | chr1_4:25332522-25332541 | Msa0157580:CDS | 25.0% |
! | ATGATTGTCAAAACCAATAA+AGG | + | chr1_4:25332567-25332586 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | - | chr1_4:25333099-25333118 | Msa0157580:intron | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | + | chr1_4:25333273-25333292 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | - | chr1_4:25333273-25333292 | Msa0157580:CDS | 25.0% |
!! | AACTTTGAAAAACTTCTCAA+AGG | + | chr1_4:25333320-25333339 | None:intergenic | 25.0% |
!! | AGAAAAATTTTAGATGACTC+TGG | + | chr1_4:25333755-25333774 | None:intergenic | 25.0% |
!!! | TCATCTAAAATTTTTCTCGA+CGG | - | chr1_4:25333758-25333777 | Msa0157580:CDS | 25.0% |
!! | TTCTTTGACTTAATTGGATT+TGG | + | chr1_4:25333932-25333951 | None:intergenic | 25.0% |
! | ATTATGAAAAAGCTAGAGAA+AGG | - | chr1_4:25333966-25333985 | Msa0157580:CDS | 25.0% |
TCCATGATTCTTTATTGCTA+GGG | + | chr1_4:25331310-25331329 | None:intergenic | 30.0% | |
TTCCATGATTCTTTATTGCT+AGG | + | chr1_4:25331311-25331330 | None:intergenic | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | - | chr1_4:25331470-25331489 | Msa0157580:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | - | chr1_4:25331481-25331500 | Msa0157580:CDS | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | - | chr1_4:25331482-25331501 | Msa0157580:CDS | 30.0% | |
GTTTACTTAATCCTAACAAC+AGG | - | chr1_4:25331507-25331526 | Msa0157580:CDS | 30.0% | |
TTTACAAACTCAATAACCTG+TGG | + | chr1_4:25331548-25331567 | None:intergenic | 30.0% | |
AAAAGTGAAAGAAAAACCTG+AGG | - | chr1_4:25331565-25331584 | Msa0157580:CDS | 30.0% | |
TAAGATATATAGATGGGATG+TGG | - | chr1_4:25331646-25331665 | Msa0157580:intron | 30.0% | |
TTACTTCTCGAAATGATCTA+AGG | + | chr1_4:25331712-25331731 | None:intergenic | 30.0% | |
!! | GCTCTTATAAATTCTAAAGC+TGG | - | chr1_4:25331752-25331771 | Msa0157580:intron | 30.0% |
! | AGAACGTCTTATGAAGTTTT+GGG | - | chr1_4:25331785-25331804 | Msa0157580:CDS | 30.0% |
GCCGATATTTATTGTTTGTT+CGG | + | chr1_4:25332078-25332097 | None:intergenic | 30.0% | |
AACAATAAATATCGGCCATT+AGG | - | chr1_4:25332082-25332101 | Msa0157580:CDS | 30.0% | |
!!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr1_4:25332106-25332125 | Msa0157580:CDS | 30.0% |
CTTACTTATTTGAACTACAC+GGG | - | chr1_4:25332220-25332239 | Msa0157580:CDS | 30.0% | |
AAATCCCTAAACAAACAACA+TGG | + | chr1_4:25332251-25332270 | None:intergenic | 30.0% | |
TAAGTTTGTCTCAAACCAAA+TGG | + | chr1_4:25332285-25332304 | None:intergenic | 30.0% | |
! | ATTTAGTTTATGCATTGCTG+AGG | - | chr1_4:25332407-25332426 | Msa0157580:CDS | 30.0% |
TAAATTTCAGCTGCCTTTAT+TGG | - | chr1_4:25332551-25332570 | Msa0157580:CDS | 30.0% | |
AAAACACCTGGAAAACTATT+CGG | + | chr1_4:25332740-25332759 | None:intergenic | 30.0% | |
GAGAATGCAAAGAAAAATCT+TGG | - | chr1_4:25332788-25332807 | Msa0157580:intron | 30.0% | |
! | TATTTCAATGCTTTTCTTCG+TGG | - | chr1_4:25333043-25333062 | Msa0157580:intron | 30.0% |
AATAAATGCAAAGCAAGAAG+GGG | + | chr1_4:25333236-25333255 | None:intergenic | 30.0% | |
GAATAAATGCAAAGCAAGAA+GGG | + | chr1_4:25333237-25333256 | None:intergenic | 30.0% | |
TGAATAAATGCAAAGCAAGA+AGG | + | chr1_4:25333238-25333257 | None:intergenic | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | + | chr1_4:25333278-25333297 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | - | chr1_4:25333276-25333295 | Msa0157580:CDS | 30.0% | |
! | TATGATGATGCTGATAATGA+CGG | - | chr1_4:25333367-25333386 | Msa0157580:CDS | 30.0% |
ATCATGATCTTCAAAACTTG+GGG | + | chr1_4:25333440-25333459 | None:intergenic | 30.0% | |
GATCATGATCTTCAAAACTT+GGG | + | chr1_4:25333441-25333460 | None:intergenic | 30.0% | |
!! | ATCATGATCGATTTGATGAA+AGG | - | chr1_4:25333452-25333471 | Msa0157580:CDS | 30.0% |
!!! | GACAATATGTTTTAAAGCGT+TGG | - | chr1_4:25333594-25333613 | Msa0157580:CDS | 30.0% |
!! | ATTTCTAAAGGTATTCGTAC+AGG | - | chr1_4:25333818-25333837 | Msa0157580:CDS | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr1_4:25333914-25333933 | None:intergenic | 30.0% |
! | TTTGTTTCTTCCGATTGATA+AGG | + | chr1_4:25334000-25334019 | None:intergenic | 30.0% |
CCATGATTCTTTATTGCTAG+GGG | + | chr1_4:25331309-25331328 | None:intergenic | 35.0% | |
TGAAAGAAAAACCTGAGGAA+AGG | - | chr1_4:25331570-25331589 | Msa0157580:CDS | 35.0% | |
GAAAGAAAAACCTGAGGAAA+GGG | - | chr1_4:25331571-25331590 | Msa0157580:CDS | 35.0% | |
! | AGCTGGAATATATTTGAAGC+TGG | - | chr1_4:25331604-25331623 | Msa0157580:CDS | 35.0% |
! | GAATGCTCTGGTTTATGTAA+TGG | + | chr1_4:25331683-25331702 | None:intergenic | 35.0% |
CGAGAAGTAAATGAAGTTCA+AGG | - | chr1_4:25331722-25331741 | Msa0157580:intron | 35.0% | |
! | GAGAACGTCTTATGAAGTTT+TGG | - | chr1_4:25331784-25331803 | Msa0157580:CDS | 35.0% |
!!! | TCTTATGAAGTTTTGGGTCA+GGG | - | chr1_4:25331791-25331810 | Msa0157580:CDS | 35.0% |
GACAATTCGTCAAAAAGAGA+TGG | - | chr1_4:25331871-25331890 | Msa0157580:CDS | 35.0% | |
AATTCGTCAAAAAGAGATGG+TGG | - | chr1_4:25331874-25331893 | Msa0157580:CDS | 35.0% | |
GTAAAAAGATGGTTTCGAGA+GGG | + | chr1_4:25331942-25331961 | None:intergenic | 35.0% | |
AGTAAAAAGATGGTTTCGAG+AGG | + | chr1_4:25331943-25331962 | None:intergenic | 35.0% | |
!!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr1_4:25331995-25332014 | Msa0157580:CDS | 35.0% |
TAAGACCTATAGTCAATCCT+AGG | + | chr1_4:25332204-25332223 | None:intergenic | 35.0% | |
! | ATTTTCTCGCTTCTACCATT+TGG | - | chr1_4:25332267-25332286 | Msa0157580:CDS | 35.0% |
!!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr1_4:25332584-25332603 | Msa0157580:CDS | 35.0% |
AATCGTCTGTGGTTTCTTAT+TGG | + | chr1_4:25332681-25332700 | None:intergenic | 35.0% | |
! | TCAATTCCGAATAGTTTTCC+AGG | - | chr1_4:25332731-25332750 | Msa0157580:intron | 35.0% |
! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr1_4:25332743-25332762 | Msa0157580:intron | 35.0% |
! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr1_4:25332744-25332763 | Msa0157580:intron | 35.0% |
!!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr1_4:25332756-25332775 | Msa0157580:intron | 35.0% |
TAAAGAATCGAACAAGTGAG+TGG | + | chr1_4:25333084-25333103 | None:intergenic | 35.0% | |
ACATTATGGTTCAGAGAATG+AGG | - | chr1_4:25333113-25333132 | Msa0157580:intron | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | - | chr1_4:25333114-25333133 | Msa0157580:intron | 35.0% | |
CTTGCTTTGCATTTATTCAC+AGG | - | chr1_4:25333239-25333258 | Msa0157580:CDS | 35.0% | |
! | ATGATGATGCTGATAATGAC+GGG | - | chr1_4:25333368-25333387 | Msa0157580:CDS | 35.0% |
TCCAAAACATCAACATTCGA+AGG | + | chr1_4:25333394-25333413 | None:intergenic | 35.0% | |
CGATCATGATCTTCAAAACT+TGG | + | chr1_4:25333442-25333461 | None:intergenic | 35.0% | |
ATGTCGTATGTTTGAGAACA+GGG | - | chr1_4:25333516-25333535 | Msa0157580:CDS | 35.0% | |
!!! | TCGACATGTTTTGAAGATCT+TGG | - | chr1_4:25333549-25333568 | Msa0157580:CDS | 35.0% |
AGTTCTTAGAAGACAATACC+TGG | - | chr1_4:25333572-25333591 | Msa0157580:CDS | 35.0% | |
!! | CGCTTTAAAACATATTGTCC+AGG | + | chr1_4:25333593-25333612 | None:intergenic | 35.0% |
TGTTCTTGAAGCTGGAAAAA+AGG | - | chr1_4:25333781-25333800 | Msa0157580:CDS | 35.0% | |
!! | GAGGAGTTGCTTATTTCTAA+AGG | - | chr1_4:25333806-25333825 | Msa0157580:CDS | 35.0% |
TTTGAAGACTTAGATGGTGT+CGG | + | chr1_4:25333845-25333864 | None:intergenic | 35.0% | |
!!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr1_4:25333851-25333870 | None:intergenic | 35.0% |
TCTTTCTTTGAACTTTGGTG+CGG | + | chr1_4:25333909-25333928 | None:intergenic | 35.0% | |
! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr1_4:25333938-25333957 | None:intergenic | 35.0% |
GGCAGAAATTCCTTATCAAT+CGG | - | chr1_4:25333987-25334006 | Msa0157580:CDS | 35.0% | |
! | TGAAGCTTTATCAGTGATTG+TGG | - | chr1_4:25334030-25334049 | Msa0157580:CDS | 35.0% |
ACATCAACTTCATCTGAGAG+TGG | - | chr1_4:25331182-25331201 | Msa0157580:CDS | 40.0% | |
TCAGCATGAATCATTGCTAG+GGG | + | chr1_4:25331269-25331288 | None:intergenic | 40.0% | |
GTCAGCATGAATCATTGCTA+GGG | + | chr1_4:25331270-25331289 | None:intergenic | 40.0% | |
TGTCAGCATGAATCATTGCT+AGG | + | chr1_4:25331271-25331290 | None:intergenic | 40.0% | |
CCCCTAGCAATAAAGAATCA+TGG | - | chr1_4:25331306-25331325 | Msa0157580:CDS | 40.0% | |
!!! | GTCTTATGAAGTTTTGGGTC+AGG | - | chr1_4:25331790-25331809 | Msa0157580:CDS | 40.0% |
! | CAGTACATTTTGAACTGCCT+AGG | - | chr1_4:25332184-25332203 | Msa0157580:CDS | 40.0% |
AACTGCCTAGGATTGACTAT+AGG | - | chr1_4:25332196-25332215 | Msa0157580:CDS | 40.0% | |
TCACACAAGACAAAATGCCT+AGG | + | chr1_4:25332341-25332360 | None:intergenic | 40.0% | |
!!! | AGACAGCAGCTACTTTTGAT+TGG | - | chr1_4:25332627-25332646 | Msa0157580:CDS | 40.0% |
TGGTCTGTATAAATCGTCTG+TGG | + | chr1_4:25332692-25332711 | None:intergenic | 40.0% | |
ACAGACGATTTATACAGACC+AGG | - | chr1_4:25332691-25332710 | Msa0157580:intron | 40.0% | |
GCATACGATTTGCGTAAGTT+TGG | + | chr1_4:25332958-25332977 | None:intergenic | 40.0% | |
CTTACGCAAATCGTATGCAT+TGG | - | chr1_4:25332960-25332979 | Msa0157580:intron | 40.0% | |
!! | TATGCATTGGTCTTCAGCTT+GGG | - | chr1_4:25332973-25332992 | Msa0157580:intron | 40.0% |
! | GTCAAGTCACATTTTACAGC+TGG | - | chr1_4:25332995-25333014 | Msa0157580:intron | 40.0% |
! | TCATGCTGAGTTGGACTTTA+AGG | - | chr1_4:25333141-25333160 | Msa0157580:CDS | 40.0% |
! | AGGGGTGTACTTGTTTACAA+CGG | + | chr1_4:25333218-25333237 | None:intergenic | 40.0% |
TATGAGGAGGACACAACAAA+AGG | - | chr1_4:25333289-25333308 | Msa0157580:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | - | chr1_4:25333290-25333309 | Msa0157580:CDS | 40.0% | |
! | GCCTTCGAATGTTGATGTTT+TGG | - | chr1_4:25333390-25333409 | Msa0157580:CDS | 40.0% |
CATGTCGTATGTTTGAGAAC+AGG | - | chr1_4:25333515-25333534 | Msa0157580:CDS | 40.0% | |
TGTCGTATGTTTGAGAACAG+GGG | - | chr1_4:25333517-25333536 | Msa0157580:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | + | chr1_4:25333635-25333654 | None:intergenic | 40.0% | |
TTGATATCGTTGTGCTTGAC+TGG | + | chr1_4:25333684-25333703 | None:intergenic | 40.0% | |
TTGAAGACTTAGATGGTGTC+GGG | + | chr1_4:25333844-25333863 | None:intergenic | 40.0% | |
TCTTCAAAAGTAGCTGCTGT+TGG | - | chr1_4:25333857-25333876 | Msa0157580:CDS | 40.0% | |
!! | TCACTGATTCATGCTGAGAG+TGG | - | chr1_4:25331227-25331246 | Msa0157580:CDS | 45.0% |
! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr1_4:25331521-25331540 | None:intergenic | 45.0% |
GAAAAACCTGAGGAAAGGGT+TGG | - | chr1_4:25331575-25331594 | Msa0157580:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+AGG | + | chr1_4:25331584-25331603 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1_4:25331587-25331606 | Msa0157580:CDS | 45.0% |
CTAAGGTAACACGAATGCTC+TGG | + | chr1_4:25331695-25331714 | None:intergenic | 45.0% | |
! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr1_4:25331878-25331897 | Msa0157580:CDS | 45.0% |
AACACAATAACGCACTAGCC+TGG | + | chr1_4:25332712-25332731 | None:intergenic | 45.0% | |
CAAAGCCCATGAAAAACACC+TGG | + | chr1_4:25332752-25332771 | None:intergenic | 45.0% | |
!! | GTATGCATTGGTCTTCAGCT+TGG | - | chr1_4:25332972-25332991 | Msa0157580:intron | 45.0% |
AATCGAACAAGTGAGTGGTC+TGG | + | chr1_4:25333079-25333098 | None:intergenic | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | - | chr1_4:25333132-25333151 | Msa0157580:intron | 45.0% | |
CTGAAATCGACCGTCAATGT+TGG | - | chr1_4:25333647-25333666 | Msa0157580:CDS | 45.0% | |
GTCTTCAGTGCCAACATTGA+CGG | + | chr1_4:25333660-25333679 | None:intergenic | 45.0% | |
TGAAGCTGGAAAAAAGGCAG+AGG | - | chr1_4:25333787-25333806 | Msa0157580:CDS | 45.0% | |
! | CTGTTGGTGAAACATCTGCT+GGG | - | chr1_4:25333873-25333892 | Msa0157580:CDS | 45.0% |
! | TGTTGGTGAAACATCTGCTG+GGG | - | chr1_4:25333874-25333893 | Msa0157580:CDS | 45.0% |
! | TCTTTGAACTTTGGTGCGGT+GGG | + | chr1_4:25333905-25333924 | None:intergenic | 45.0% |
! | TTCTTTGAACTTTGGTGCGG+TGG | + | chr1_4:25333906-25333925 | None:intergenic | 45.0% |
! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr1_4:25331533-25331552 | None:intergenic | 50.0% |
!!! | GAAGTTTTGGGTCAGGGAGT+TGG | - | chr1_4:25331797-25331816 | Msa0157580:CDS | 50.0% |
!! | TGGGCTTTGTTCATGGCACA+TGG | - | chr1_4:25332763-25332782 | Msa0157580:intron | 50.0% |
GAAGGCCTACCTCAGACTTT+AGG | - | chr1_4:25332924-25332943 | Msa0157580:intron | 50.0% | |
! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr1_4:25332932-25332951 | None:intergenic | 50.0% |
GACAAGCCACCTAAAGTCTG+AGG | + | chr1_4:25332936-25332955 | None:intergenic | 50.0% | |
ATCCCAACAGTCAGCTGATG+CGG | - | chr1_4:25333191-25333210 | Msa0157580:CDS | 50.0% | |
! | GCTGTTGGTGAAACATCTGC+TGG | - | chr1_4:25333872-25333891 | Msa0157580:CDS | 50.0% |
GCCAACAACAGACAGTCCAC+AGG | - | chr1_4:25331529-25331548 | Msa0157580:CDS | 55.0% | |
!! | GTTTTGGGTCAGGGAGTTGG+AGG | - | chr1_4:25331800-25331819 | Msa0157580:CDS | 55.0% |
GGCCTACCTCAGACTTTAGG+TGG | - | chr1_4:25332927-25332946 | Msa0157580:intron | 55.0% | |
GACCGCATCAGCTGACTGTT+GGG | + | chr1_4:25333196-25333215 | None:intergenic | 55.0% | |
CTCGACGGTGTTCTTGAAGC+TGG | - | chr1_4:25333773-25333792 | Msa0157580:CDS | 55.0% | |
GGACCGCATCAGCTGACTGT+TGG | + | chr1_4:25333197-25333216 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 25331173 | 25334063 | 25331173 | ID=Msa0157580;Name=Msa0157580 |
chr1_4 | mRNA | 25331173 | 25334063 | 25331173 | ID=Msa0157580-mRNA-1;Parent=Msa0157580;Name=Msa0157580-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|778 |
chr1_4 | exon | 25333133 | 25334063 | 25333133 | ID=Msa0157580-mRNA-1:exon:8573;Parent=Msa0157580-mRNA-1 |
chr1_4 | exon | 25331753 | 25332675 | 25331753 | ID=Msa0157580-mRNA-1:exon:8572;Parent=Msa0157580-mRNA-1 |
chr1_4 | exon | 25331173 | 25331655 | 25331173 | ID=Msa0157580-mRNA-1:exon:8571;Parent=Msa0157580-mRNA-1 |
chr1_4 | CDS | 25333133 | 25334063 | 25333133 | ID=Msa0157580-mRNA-1:cds;Parent=Msa0157580-mRNA-1 |
chr1_4 | CDS | 25331753 | 25332675 | 25331753 | ID=Msa0157580-mRNA-1:cds;Parent=Msa0157580-mRNA-1 |
chr1_4 | CDS | 25331173 | 25331655 | 25331173 | ID=Msa0157580-mRNA-1:cds;Parent=Msa0157580-mRNA-1 |
Gene Sequence |
Protein sequence |