AlfalfaGEDB | Msa0157600

M. sativa cultivar zhongmu-4 / Msa0157600

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157600	RHN78770.1	74.576	295	51	4	27	303	16	304	1.66e-137	415
Msa0157600	RHN78770.1	82.807	285	34	4	380	660	43	316	2.05e-155	461

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157600	A0A396JKH3	74.576	295	51	4	27	303	16	304	7.95e-138	415
Msa0157600	A0A396JKH3	82.807	285	34	4	380	660	43	316	9.81e-156	461

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0157600	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157600	MtrunA17_Chr1g0169561	82.807	285	34	4	380	660	43	316	1.89e-159	461
Msa0157600	MtrunA17_Chr1g0169561	74.576	295	51	4	27	303	16	304	1.53e-141	415
Msa0157600	MtrunA17_Chr1g0169521	82.168	286	36	4	379	660	42	316	1.32e-156	454
Msa0157600	MtrunA17_Chr1g0169521	74.828	290	49	4	27	298	16	299	2.51e-140	412
Msa0157600	MtrunA17_Chr1g0174001	72.449	196	47	3	471	660	1	195	2.76e-88	273
Msa0157600	MtrunA17_Chr1g0174001	68.750	176	28	2	148	296	1	176	7.18e-71	228
Msa0157600	MtrunA17_Chr7g0214511	53.469	245	76	10	430	660	67	287	3.45e-55	189
Msa0157600	MtrunA17_Chr1g0174871	38.435	294	123	11	380	659	35	284	5.21e-35	134
Msa0157600	MtrunA17_Chr1g0174871	31.461	267	126	10	53	297	28	259	7.48e-23	99.4
Msa0157600	MtrunA17_Chr1g0172861	37.705	305	107	13	379	660	34	278	2.91e-33	129

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 142 sgRNAs with CRISPR-Local

Find 672 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAGGGTTTGAACTT+AGG	0.336722	1_4:-25414113	None:intergenic
AACAAGGTGTGATGCGAACA+AGG	0.559174	1_4:+25423726	Msa0157600:CDS
AACAAGGTGTGCTGCTAACA+AGG	0.519240	1_4:+25414879	Msa0157600:CDS
AACAGAAAAGAAACACTAAT+TGG	0.288536	1_4:-25423963	None:intergenic
AACTATAGGGTTTGAACTTA+GGG	0.333626	1_4:-25414112	None:intergenic
AAGACCGAGACAATGCTGCA+AGG	0.626612	1_4:+25417400	Msa0157600:CDS
AAGATGGGGCAGTCGGTGAG+TGG	0.586640	1_4:-25414619	None:intergenic
AATGAAATTCAGAAACAACA+AGG	0.709396	1_4:+25414083	Msa0157600:CDS
AATGAGAAGATGAAGGAACA+AGG	0.607433	1_4:+25414863	Msa0157600:CDS
AATGAGAAGATGAAGGAACA+AGG	0.607433	1_4:+25423710	Msa0157600:CDS

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATCACTTGAATGATGAAAA+TGG	-	chr1_4:25414028-25414047	None:intergenic	30.0%
AACTATAGGGTTTGAACTTA+GGG	-	chr1_4:25414115-25414134	None:intergenic	30.0%
AAACTATAGGGTTTGAACTT+AGG	-	chr1_4:25414116-25414135	None:intergenic	30.0%
CACAAACATAATCATGATGA+TGG	+	chr1_4:25414482-25414501	Msa0157600:CDS	30.0%
TGTTACAAACATCAGATGTA+TGG	-	chr1_4:25414520-25414539	None:intergenic	30.0%
TACATCTGATGTTTGTAACA+AGG	+	chr1_4:25414520-25414539	Msa0157600:intron	30.0%
AACAGAAAAGAAACACTAAC+TGG	-	chr1_4:25415119-25415138	None:intergenic	30.0%
CGATGATGACATTATAACTA+AGG	-	chr1_4:25415212-25415231	None:intergenic	30.0%
ATTAAGACAAACACAAAAGG+TGG	-	chr1_4:25415287-25415306	None:intergenic	30.0%
TTGTCTGTGTGAATCTAAAT+AGG	+	chr1_4:25415316-25415335	Msa0157600:intron	30.0%

Showing 1 to 10 of 672 entries

Previous1 2 3 4 5…68Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	25413972	25423970	25413972	ID=Msa0157600;Name=Msa0157600
chr1_4	mRNA	25413972	25423970	25413972	ID=Msa0157600-mRNA-1;Parent=Msa0157600;Name=Msa0157600-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|0.83\|0\|0\|6\|0\|660
chr1_4	exon	25413972	25414131	25413972	ID=Msa0157600-mRNA-1:exon:8588;Parent=Msa0157600-mRNA-1
chr1_4	exon	25414282	25414529	25414282	ID=Msa0157600-mRNA-1:exon:8589;Parent=Msa0157600-mRNA-1
chr1_4	exon	25414542	25414789	25414542	ID=Msa0157600-mRNA-1:exon:8590;Parent=Msa0157600-mRNA-1
chr1_4	exon	25414832	25415063	25414832	ID=Msa0157600-mRNA-1:exon:8591;Parent=Msa0157600-mRNA-1
chr1_4	exon	25417252	25417499	25417252	ID=Msa0157600-mRNA-1:exon:8592;Parent=Msa0157600-mRNA-1
chr1_4	exon	25423124	25423970	25423124	ID=Msa0157600-mRNA-1:exon:8593;Parent=Msa0157600-mRNA-1
chr1_4	CDS	25413972	25414131	25413972	ID=Msa0157600-mRNA-1:cds;Parent=Msa0157600-mRNA-1
chr1_4	CDS	25414282	25414529	25414282	ID=Msa0157600-mRNA-1:cds;Parent=Msa0157600-mRNA-1
chr1_4	CDS	25414542	25414789	25414542	ID=Msa0157600-mRNA-1:cds;Parent=Msa0157600-mRNA-1
chr1_4	CDS	25414832	25415063	25414832	ID=Msa0157600-mRNA-1:cds;Parent=Msa0157600-mRNA-1
chr1_4	CDS	25417252	25417499	25417252	ID=Msa0157600-mRNA-1:cds;Parent=Msa0157600-mRNA-1
chr1_4	CDS	25423124	25423970	25423124	ID=Msa0157600-mRNA-1:cds;Parent=Msa0157600-mRNA-1

Gene Sequence

>Msa0157600

TTCAATTCCACTGCTACATCGATCATGAAGAGTTCTTTCTCATCATCCTATTTCCATTTTCATCATTCAAGTGATCACAAACCCGAAAACAACTATGAATATCATCATGATAATGAAATTCAGAAACAACAAGGTTCAAACCCTAAGTTCAAACCCTATAGTTCAAGAATCTACAGTTGTGAGTTTTGTCACAAAACATTCACCTCTGGTAAATCACTTGGTGGTCACAAAACCATTCACCGCTCCTCTAACACTCTTCCTCAACCTAAAACAAACAAACAGATCCATGATCATGCTGTGAATAACGGCGGCACCTTGAAGAAGACTACAAAAATTACTTGGGTTTTTTCTTCTTCTCTTCACAAACATAATCATGATGATGGGAAACTGAAGAACCATACATCTGATGTTTTTTCATCCAATAGTGGTTTGAATGGACATATGAGATGGCATACTCAAAAGGGTTCGAAGAAGGGTGTTATTATCCACTCACCGACTGCCCCATCTTCCTTGGAACAAAGTCAACTTGAGTTTCTACCATCCACTGACTTGTCAAAGTACTTGCCGCCAATATCATATAAGACCAAAAAACGGAGTCCCAGGAGAAGGCGTATTGCTGATAATGATGAGGAAATTACTATTGCTGCAAAAACATTGCAGAAGATTTCCAGCAATACGGTGGATGATAATGAGAAGATGAAGGAACAAGGTGTGCTGCTAACAAGGTGTGTTTGCCACAACGAAAAAAACTTGGTTCTGAGGTTGAAGATTCCTAAAGACAAGATTTTTCAAACATCGCAAGATTGCAAGGAACCTGCAGGATCTAGCTGTGATATTGAAGGCAAGAAGAATATTAGCGAAGATGAAACTGAATTAGGGTCAAGAGTTCCGCGGACGGGCCCATTGTCTCCTTCATTTGCCGCTGCCACATCCCTCGTGTTACTGGCACATGAAAGCAACTGTTACGGAAGGATGATCATAGAGGAAGGAGGGGTGGGTCCACTTTTGAAGTTGATGAAGGAAGAAGGGAATACTCAAGACCGAGACAATGCTGCAAGGGCCATTCGTATACTCAAACCCATCAACTCTGCCATTATACTCATCACAAACGCCGCAACTATGCGCACAGAAGAAGATTGTGAGTTTTGTCACAAAACATTTACCTCTGGTAAATCACTTGGTGGCCACAAAACCATTCACCGCTCCTTCAACACTCTTCTTAAACCTAAAACAAACAAACAGATCCATGATCATGCTGTGAATAACGGCACCTTGAAGAAGACTACAAAAATTACTTGGGTTTTTTCTTCTTCTCTTCATAATCATGATCATGATGATGGGAAACCGAAGAACCATACATGTGATGTTTGTAACAAGGTTTTTTCATCCAACAACGCTTTGAATGGACATATGAGATTTCATACTCCAAAGGGTTTGAATAAGGGTACTATTATTCACTCACCGACTGCCCCATCTTCCTTGGAACAGAGCCATCTTGAGTTTCTACCAGCAACTGACTTGTCAAAGTACTTGCCGCCAATATCGTATAAGACCAAAAAACGGAGTCCCAGGAGAAGGCATATTCCTGATGATGATGATGAGGAAATTACTCTTGCTGCAAAAACATTGTTATGTATGTCTTATGAGGGATCAACTACCAATCTTGATGTGAATCACCGTCACGGTAAAAGGCAGAAGATTTCCAGCAATACTGTGGATGATAATGAGAAGATGAAGGAACAAGGTGTGATGCGAACAAGGTGTGTTTGCCACAACGAAAAGAACTTGGTGCTGAGGTTGAAGATTCCGAAAGATGCAATTTTTCAAACATCACAAGATTCCAAGGAACCTGCAGTCTCTAACCTTGATATTGAAGGGAAGAAGAATGTTACCGAAGATGAAACCGAATTAGGGCCAAGAGTTGTCAGGAATTTCGATTTGAATGAGCTTCCAAGTGATGATTTTGAAGATGAAACCAATTAG

Protein sequence

>Msa0157600

FNSTATSIMKSSFSSSYFHFHHSSDHKPENNYEYHHDNEIQKQQGSNPKFKPYSSRIYSCEFCHKTFTSGKSLGGHKTIHRSSNTLPQPKTNKQIHDHAVNNGGTLKKTTKITWVFSSSLHKHNHDDGKLKNHTSDVFSSNSGLNGHMRWHTQKGSKKGVIIHSPTAPSSLEQSQLEFLPSTDLSKYLPPISYKTKKRSPRRRRIADNDEEITIAAKTLQKISSNTVDDNEKMKEQGVLLTRCVCHNEKNLVLRLKIPKDKIFQTSQDCKEPAGSSCDIEGKKNISEDETELGSRVPRTGPLSPSFAAATSLVLLAHESNCYGRMIIEEGGVGPLLKLMKEEGNTQDRDNAARAIRILKPINSAIILITNAATMRTEEDCEFCHKTFTSGKSLGGHKTIHRSFNTLLKPKTNKQIHDHAVNNGTLKKTTKITWVFSSSLHNHDHDDGKPKNHTCDVCNKVFSSNNALNGHMRFHTPKGLNKGTIIHSPTAPSSLEQSHLEFLPATDLSKYLPPISYKTKKRSPRRRHIPDDDDEEITLAAKTLLCMSYEGSTTNLDVNHRHGKRQKISSNTVDDNEKMKEQGVMRTRCVCHNEKNLVLRLKIPKDAIFQTSQDSKEPAVSNLDIEGKKNVTEDETELGPRVVRNFDLNELPSDDFEDETN*