Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157920 | RHN57311.1 | 51.087 | 92 | 8 | 1 | 302 | 356 | 867 | 958 | 3.55e-13 | 83.6 |
| Msa0157920 | RHN57311.1 | 59.116 | 181 | 48 | 2 | 151 | 305 | 300 | 480 | 1.69e-55 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157920 | sp|Q9C5X9|HAC1_ARATH | 40.523 | 153 | 63 | 3 | 178 | 303 | 991 | 1142 | 3.73e-24 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157920 | A0A396HXK4 | 51.087 | 92 | 8 | 1 | 302 | 356 | 867 | 958 | 1.70e-13 | 83.6 |
| Msa0157920 | A0A396HXK4 | 59.116 | 181 | 48 | 2 | 151 | 305 | 300 | 480 | 8.09e-56 | 207 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0157920 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157920 | MtrunA17_Chr5g0438991 | 59.116 | 181 | 48 | 2 | 151 | 305 | 300 | 480 | 1.56e-59 | 207 |
| Msa0157920 | MtrunA17_Chr5g0438991 | 51.087 | 92 | 8 | 1 | 302 | 356 | 867 | 958 | 3.27e-17 | 83.6 |
| Msa0157920 | MtrunA17_Chr3g0138411 | 63.473 | 167 | 34 | 2 | 168 | 307 | 498 | 664 | 2.83e-58 | 204 |
| Msa0157920 | MtrunA17_Chr3g0138411 | 48.571 | 105 | 17 | 1 | 303 | 370 | 1100 | 1204 | 9.08e-20 | 91.3 |
| Msa0157920 | MtrunA17_Chr3g0138411 | 48.958 | 96 | 21 | 2 | 1 | 68 | 57 | 152 | 2.05e-13 | 72.0 |
| Msa0157920 | MtrunA17_Chr3g0133461 | 59.302 | 172 | 36 | 3 | 168 | 305 | 620 | 791 | 4.07e-54 | 192 |
| Msa0157920 | MtrunA17_Chr3g0133461 | 66.667 | 99 | 32 | 1 | 66 | 163 | 169 | 267 | 1.33e-33 | 132 |
| Msa0157920 | MtrunA17_Chr3g0133461 | 50.476 | 105 | 15 | 1 | 303 | 370 | 1237 | 1341 | 2.15e-20 | 93.2 |
| Msa0157920 | MtrunA17_Chr3g0133461 | 47.674 | 86 | 18 | 1 | 12 | 70 | 16 | 101 | 1.42e-14 | 75.5 |
| Msa0157920 | MtrunA17_Chr6g0456861 | 58.824 | 170 | 39 | 3 | 160 | 305 | 121 | 283 | 1.60e-52 | 186 |
| Msa0157920 | MtrunA17_Chr6g0456861 | 47.059 | 102 | 15 | 2 | 303 | 365 | 671 | 772 | 1.12e-17 | 84.7 |
| Msa0157920 | MtrunA17_Chr6g0456851 | 52.410 | 166 | 49 | 3 | 168 | 305 | 417 | 580 | 2.15e-44 | 163 |
| Msa0157920 | MtrunA17_Chr4g0000031 | 39.216 | 153 | 65 | 3 | 178 | 303 | 1004 | 1155 | 7.61e-21 | 94.7 |
| Msa0157920 | MtrunA17_Chr5g0402011 | 80.645 | 31 | 6 | 0 | 213 | 243 | 21 | 51 | 4.81e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0157920 | AT1G79000.2 | 40.523 | 153 | 63 | 3 | 178 | 303 | 991 | 1142 | 3.74e-25 | 108 |
| Msa0157920 | AT1G79000.3 | 40.523 | 153 | 63 | 3 | 178 | 303 | 967 | 1118 | 3.78e-25 | 108 |
| Msa0157920 | AT1G79000.1 | 40.523 | 153 | 63 | 3 | 178 | 303 | 991 | 1142 | 3.79e-25 | 108 |
| Msa0157920 | AT3G12980.2 | 34.568 | 162 | 76 | 5 | 178 | 311 | 891 | 1050 | 1.58e-22 | 100 |
| Msa0157920 | AT3G12980.1 | 34.568 | 162 | 76 | 5 | 178 | 311 | 972 | 1131 | 1.63e-22 | 100 |
| Msa0157920 | AT1G16710.9 | 38.346 | 133 | 54 | 3 | 178 | 283 | 974 | 1105 | 3.09e-20 | 93.2 |
| Msa0157920 | AT1G16710.2 | 39.869 | 153 | 64 | 3 | 178 | 303 | 971 | 1122 | 4.50e-20 | 92.8 |
| Msa0157920 | AT1G16710.3 | 39.869 | 153 | 64 | 3 | 178 | 303 | 974 | 1125 | 4.59e-20 | 92.8 |
| Msa0157920 | AT1G16710.10 | 39.869 | 153 | 64 | 3 | 178 | 303 | 974 | 1125 | 4.59e-20 | 92.8 |
| Msa0157920 | AT1G16710.8 | 39.869 | 153 | 64 | 3 | 178 | 303 | 974 | 1125 | 4.59e-20 | 92.8 |
| Msa0157920 | AT1G16710.7 | 39.869 | 153 | 64 | 3 | 178 | 303 | 974 | 1125 | 4.59e-20 | 92.8 |
| Msa0157920 | AT1G16710.1 | 39.869 | 153 | 64 | 3 | 178 | 303 | 1000 | 1151 | 5.09e-20 | 92.8 |
| Msa0157920 | AT1G16710.6 | 39.869 | 153 | 64 | 3 | 178 | 303 | 935 | 1086 | 5.14e-20 | 92.8 |
| Msa0157920 | AT1G16710.4 | 39.869 | 153 | 64 | 3 | 178 | 303 | 935 | 1086 | 5.14e-20 | 92.8 |
| Msa0157920 | AT1G16710.5 | 39.869 | 153 | 64 | 3 | 178 | 303 | 935 | 1086 | 5.14e-20 | 92.8 |
| Msa0157920 | AT1G55970.2 | 33.333 | 153 | 74 | 3 | 178 | 303 | 766 | 917 | 1.89e-19 | 90.9 |
| Msa0157920 | AT1G55970.1 | 33.333 | 153 | 74 | 3 | 178 | 303 | 766 | 917 | 1.95e-19 | 90.9 |
| Msa0157920 | AT1G67220.1 | 35.088 | 171 | 83 | 4 | 169 | 312 | 681 | 850 | 2.98e-17 | 84.3 |
Find 59 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCTCTTCTATCTATTAT+TGG | 0.115588 | 1_4:+26236400 | Msa0157920:CDS |
| AAATGGTATACAATCGTAAT+TGG | 0.256210 | 1_4:+26235529 | None:intergenic |
| AAAATGATGGATTCAGGTTT+TGG | 0.264675 | 1_4:+26236273 | Msa0157920:CDS |
| TCAAGATTCTTCGTAGAAAT+AGG | 0.266809 | 1_4:-26237220 | None:intergenic |
| AGAAGTGTTTGAAAATAATA+TGG | 0.274421 | 1_4:-26236351 | None:intergenic |
| TATCTATTATTGGAACAATA+TGG | 0.282393 | 1_4:+26236410 | Msa0157920:CDS |
| AAACAGAAAATGATGGATTC+AGG | 0.292391 | 1_4:+26236267 | Msa0157920:CDS |
| TTGCCGTAGAACTGAAATTA+TGG | 0.308379 | 1_4:+26238417 | Msa0157920:CDS |
| CTACAACATCAAAAGAGATT+TGG | 0.310781 | 1_4:+26237411 | Msa0157920:CDS |
| GGCTGAGATGGTCCTGCTTC+TGG | 0.322019 | 1_4:-26235957 | None:intergenic |
| TTTCCTCCACTTACTAATAT+AGG | 0.323638 | 1_4:+26236026 | Msa0157920:CDS |
| ATGGATTCAGATTTACTAGA+AGG | 0.348094 | 1_4:-26236228 | None:intergenic |
| AGTTTAGATCAATGGAATTA+CGG | 0.368731 | 1_4:+26236318 | Msa0157920:CDS |
| GTTTAGATCAATGGAATTAC+GGG | 0.382219 | 1_4:+26236319 | Msa0157920:CDS |
| CAGAATTAGCTGCGCGGCAT+TGG | 0.385942 | 1_4:-26238013 | None:intergenic |
| CATTGAAATACTTGAAGAAC+CGG | 0.413709 | 1_4:+26237255 | Msa0157920:CDS |
| TGAGAAATTTGCACCTATGC+TGG | 0.423508 | 1_4:+26235672 | Msa0157920:CDS |
| TCATGCAAGAGAGAGAAAAC+TGG | 0.430015 | 1_4:+26237588 | Msa0157920:CDS |
| ATCATTAACATGTCTTATAG+TGG | 0.430271 | 1_4:-26236202 | None:intergenic |
| AGAATTAGCTGCGCGGCATT+GGG | 0.434067 | 1_4:-26238012 | None:intergenic |
| ACTATCAAAGTTTAGATCAA+TGG | 0.450536 | 1_4:+26236310 | Msa0157920:CDS |
| TTTCCATAATTTCAGTTCTA+CGG | 0.452548 | 1_4:-26238420 | None:intergenic |
| TTCTTGATTTGAGAACAGTT+TGG | 0.456469 | 1_4:-26238050 | None:intergenic |
| AGCAGGCCATGAGCAATAGA+AGG | 0.474315 | 1_4:-26235978 | None:intergenic |
| AGACGAAGAATTTAATGCAC+AGG | 0.489577 | 1_4:+26237144 | Msa0157920:CDS |
| ACTTACCGATGCTGCTTCAA+AGG | 0.495751 | 1_4:+26235705 | Msa0157920:CDS |
| TCCAATAATAGATAGAAGAG+AGG | 0.523721 | 1_4:-26236401 | None:intergenic |
| CATCGTCGGGCAAACAAAGC+AGG | 0.524987 | 1_4:-26235995 | None:intergenic |
| TCTCAGCCTTCTATTGCTCA+TGG | 0.533552 | 1_4:+26235972 | Msa0157920:CDS |
| TTCAGTTCTACGGCAAGACT+CGG | 0.534719 | 1_4:-26238410 | None:intergenic |
| AAGTCTTTCTATTAGAGAAG+TGG | 0.536596 | 1_4:+26237850 | Msa0157920:CDS |
| CTGCTTTGTTTGCCCGACGA+TGG | 0.540567 | 1_4:+26235996 | Msa0157920:CDS |
| CTCTGAAAATCTAACTTCTG+AGG | 0.541761 | 1_4:-26236174 | None:intergenic |
| TAGTATGGCGTACCAGAAGC+AGG | 0.542587 | 1_4:+26235945 | Msa0157920:intron |
| GGAAATGATGAACCATCGTC+GGG | 0.545770 | 1_4:-26236008 | None:intergenic |
| TATGGAGAAATTTCCCCTCT+CGG | 0.556977 | 1_4:+26236428 | Msa0157920:CDS |
| CATGCAAGAGAGAGAAAACT+GGG | 0.565706 | 1_4:+26237589 | Msa0157920:CDS |
| GAACAGTTTGGATGAGAGCA+TGG | 0.567280 | 1_4:-26238038 | None:intergenic |
| GACGAAGAATTTAATGCACA+GGG | 0.569692 | 1_4:+26237145 | Msa0157920:CDS |
| AGTAGCAATATTTCCAGCAT+AGG | 0.573201 | 1_4:-26235685 | None:intergenic |
| AGCACACCTATATTAGTAAG+TGG | 0.587225 | 1_4:-26236032 | None:intergenic |
| ACTGAAATTATGGAAAGCGA+TGG | 0.587396 | 1_4:+26238427 | Msa0157920:CDS |
| TGAGCAATAGAAGGCTGAGA+TGG | 0.590756 | 1_4:-26235969 | None:intergenic |
| CCAATAATAGATAGAAGAGA+GGG | 0.591142 | 1_4:-26236400 | None:intergenic |
| ACAAACCTTTGAAGCAGCAT+CGG | 0.591436 | 1_4:-26235710 | None:intergenic |
| GAAAGCGATGGAGCAGTCGT+TGG | 0.592154 | 1_4:+26238439 | Msa0157920:CDS |
| TGGATTCAGATTTACTAGAA+GGG | 0.594398 | 1_4:-26236227 | None:intergenic |
| AATGTGATAAATGCAAAAGA+TGG | 0.600930 | 1_4:+26237368 | Msa0157920:CDS |
| AGGAAATGATGAACCATCGT+CGG | 0.601265 | 1_4:-26236009 | None:intergenic |
| AGATCAATGGAATTACGGGA+TGG | 0.604111 | 1_4:+26236323 | Msa0157920:CDS |
| ATTAGAGAAGTGGTATCTGT+CGG | 0.611985 | 1_4:+26237860 | Msa0157920:CDS |
| TTGTCGACTTACACCGAGAG+GGG | 0.649942 | 1_4:-26236441 | None:intergenic |
| ACACCTATATTAGTAAGTGG+AGG | 0.663456 | 1_4:-26236029 | None:intergenic |
| CAGGACATATATACTCAGCA+TGG | 0.677779 | 1_4:-26237438 | None:intergenic |
| ATTGTCGACTTACACCGAGA+GGG | 0.681643 | 1_4:-26236442 | None:intergenic |
| AGCGAATGAGAATCTTGACG+AGG | 0.722253 | 1_4:+26237622 | Msa0157920:CDS |
| CATTGTCGACTTACACCGAG+AGG | 0.723290 | 1_4:-26236443 | None:intergenic |
| TCTGAGGTTGATATTCACTG+AGG | 0.737127 | 1_4:-26236158 | None:intergenic |
| ATGGTTCAGAATTAGCTGCG+CGG | 0.767373 | 1_4:-26238019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTGTTTTTATACAAATT+TGG | + | chr1_4:26235841-26235860 | Msa0157920:intron | 15.0% |
| !! | TAATTGATATTTAAACTTAC+CGG | - | chr1_4:26237277-26237296 | None:intergenic | 15.0% |
| !!! | ATTTTCAATTTTGTTTTAAG+TGG | - | chr1_4:26237468-26237487 | None:intergenic | 15.0% |
| !! | ACTTAAAACAAAATTGAAAA+TGG | + | chr1_4:26237467-26237486 | Msa0157920:intron | 15.0% |
| !!! | TATTACTATTTTCAATTTAC+AGG | - | chr1_4:26237718-26237737 | None:intergenic | 15.0% |
| !!! | TTTTCAAAGCAATATATATT+TGG | - | chr1_4:26237785-26237804 | None:intergenic | 15.0% |
| !!! | ATATAATTTTCACAGAAATG+TGG | + | chr1_4:26235576-26235595 | Msa0157920:intron | 20.0% |
| !!! | AGAAGTGTTTGAAAATAATA+TGG | - | chr1_4:26236354-26236373 | None:intergenic | 20.0% |
| !!! | ATATTATTTTCAAACACTTC+TGG | + | chr1_4:26236353-26236372 | Msa0157920:CDS | 20.0% |
| !! | TATCTATTATTGGAACAATA+TGG | + | chr1_4:26236410-26236429 | Msa0157920:CDS | 20.0% |
| !!! | TACAAATATGTTTTGTTGTT+TGG | - | chr1_4:26236647-26236666 | None:intergenic | 20.0% |
| !!! | TGTTTTTATACAAATTTGGC+AGG | + | chr1_4:26235845-26235864 | Msa0157920:intron | 25.0% |
| ! | TATCCAGTATTATAAGACTT+AGG | - | chr1_4:26235927-26235946 | None:intergenic | 25.0% |
| ! | TCTTATAATACTGGATAGTA+TGG | + | chr1_4:26235930-26235949 | Msa0157920:intron | 25.0% |
| ! | ATCATTAACATGTCTTATAG+TGG | - | chr1_4:26236205-26236224 | None:intergenic | 25.0% |
| !!! | ATCCATCATTTTCTGTTTTT+TGG | - | chr1_4:26236265-26236284 | None:intergenic | 25.0% |
| ! | ACTATCAAAGTTTAGATCAA+TGG | + | chr1_4:26236310-26236329 | Msa0157920:CDS | 25.0% |
| ! | AGTTTAGATCAATGGAATTA+CGG | + | chr1_4:26236318-26236337 | Msa0157920:CDS | 25.0% |
| !!! | TGTTAATATTGATGATGAAG+AGG | + | chr1_4:26236476-26236495 | Msa0157920:intron | 25.0% |
| ! | AGTAATATCTAAACAGATCA+AGG | - | chr1_4:26236725-26236744 | None:intergenic | 25.0% |
| ! | TATATGTAAATTGCAGGAAT+AGG | - | chr1_4:26236928-26236947 | None:intergenic | 25.0% |
| ! | TATGCATATATGTAAATTGC+AGG | - | chr1_4:26236934-26236953 | None:intergenic | 25.0% |
| ! | CACAATATAAGCAAAAAAGT+GGG | - | chr1_4:26237090-26237109 | None:intergenic | 25.0% |
| ! | TCACAATATAAGCAAAAAAG+TGG | - | chr1_4:26237091-26237110 | None:intergenic | 25.0% |
| ! | ACTTCAAAAATCACATTCAA+TGG | + | chr1_4:26237193-26237212 | Msa0157920:CDS | 25.0% |
| ! | AATGTGATAAATGCAAAAGA+TGG | + | chr1_4:26237368-26237387 | Msa0157920:CDS | 25.0% |
| ! | CTTATTGATCTGAATATTGT+AGG | + | chr1_4:26237814-26237833 | Msa0157920:intron | 25.0% |
| ! | ACCATATATTCTTACAATGT+TGG | - | chr1_4:26238124-26238143 | None:intergenic | 25.0% |
| !! | GAATATCCAAATTTTCTAAG+TGG | - | chr1_4:26238232-26238251 | None:intergenic | 25.0% |
| ! | TTTCCATAATTTCAGTTCTA+CGG | - | chr1_4:26238423-26238442 | None:intergenic | 25.0% |
| CTTGCATTTGATACTCTTAT+TGG | - | chr1_4:26235794-26235813 | None:intergenic | 30.0% | |
| ! | TTTTATACAAATTTGGCAGG+AGG | + | chr1_4:26235848-26235867 | Msa0157920:intron | 30.0% |
| ! | GTTCCTAAGTCTTATAATAC+TGG | + | chr1_4:26235921-26235940 | Msa0157920:intron | 30.0% |
| TTTCCTCCACTTACTAATAT+AGG | + | chr1_4:26236026-26236045 | Msa0157920:CDS | 30.0% | |
| TGGATTCAGATTTACTAGAA+GGG | - | chr1_4:26236230-26236249 | None:intergenic | 30.0% | |
| ATGGATTCAGATTTACTAGA+AGG | - | chr1_4:26236231-26236250 | None:intergenic | 30.0% | |
| !!! | ATCATTTTCTGTTTTTTGGC+TGG | - | chr1_4:26236261-26236280 | None:intergenic | 30.0% |
| AGCCAAAAAACAGAAAATGA+TGG | + | chr1_4:26236260-26236279 | Msa0157920:CDS | 30.0% | |
| !! | AAACAGAAAATGATGGATTC+AGG | + | chr1_4:26236267-26236286 | Msa0157920:CDS | 30.0% |
| !!! | AAAATGATGGATTCAGGTTT+TGG | + | chr1_4:26236273-26236292 | Msa0157920:CDS | 30.0% |
| GTTTAGATCAATGGAATTAC+GGG | + | chr1_4:26236319-26236338 | Msa0157920:CDS | 30.0% | |
| CCAATAATAGATAGAAGAGA+GGG | - | chr1_4:26236403-26236422 | None:intergenic | 30.0% | |
| TCCAATAATAGATAGAAGAG+AGG | - | chr1_4:26236404-26236423 | None:intergenic | 30.0% | |
| ATCATCAACTATCGTATTTG+AGG | - | chr1_4:26236595-26236614 | None:intergenic | 30.0% | |
| ACATATTTGTAGTCTGAGAA+AGG | + | chr1_4:26236656-26236675 | Msa0157920:intron | 30.0% | |
| TAATTGAAAACACTAGAAGG+TGG | - | chr1_4:26236702-26236721 | None:intergenic | 30.0% | |
| AGGTAATTGAAAACACTAGA+AGG | - | chr1_4:26236705-26236724 | None:intergenic | 30.0% | |
| ATATAACATCCAAGGATAGT+TGG | - | chr1_4:26236768-26236787 | None:intergenic | 30.0% | |
| ACATGCATATATAACATCCA+AGG | - | chr1_4:26236776-26236795 | None:intergenic | 30.0% | |
| ! | AAGAGTTGTTAGCTTCTATA+TGG | - | chr1_4:26236985-26237004 | None:intergenic | 30.0% |
| TTTAACACAGATTACTTCTG+AGG | + | chr1_4:26237004-26237023 | Msa0157920:intron | 30.0% | |
| TATAAGCAAAAAAGTGGGAT+TGG | - | chr1_4:26237085-26237104 | None:intergenic | 30.0% | |
| TCAAGATTCTTCGTAGAAAT+AGG | - | chr1_4:26237223-26237242 | None:intergenic | 30.0% | |
| CTACGAAGAATCTTGAAAAA+AGG | + | chr1_4:26237227-26237246 | Msa0157920:CDS | 30.0% | |
| CATTGAAATACTTGAAGAAC+CGG | + | chr1_4:26237255-26237274 | Msa0157920:CDS | 30.0% | |
| CTACAACATCAAAAGAGATT+TGG | + | chr1_4:26237411-26237430 | Msa0157920:CDS | 30.0% | |
| !!! | TTTTGTTTTAAGTGGCATAC+AGG | - | chr1_4:26237460-26237479 | None:intergenic | 30.0% |
| ! | CAAAATGTCTTTTCTCTAAG+TGG | - | chr1_4:26237562-26237581 | None:intergenic | 30.0% |
| AAGTCTTTCTATTAGAGAAG+TGG | + | chr1_4:26237850-26237869 | Msa0157920:CDS | 30.0% | |
| TTATTCAGTTTCACCATACT+GGG | - | chr1_4:26237925-26237944 | None:intergenic | 30.0% | |
| TAAGTCAGTAAGTATGTCTT+TGG | - | chr1_4:26237953-26237972 | None:intergenic | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr1_4:26238053-26238072 | None:intergenic | 30.0% |
| GCCAACATTGTAAGAATATA+TGG | + | chr1_4:26238120-26238139 | Msa0157920:intron | 30.0% | |
| TCTACACCACTTAGAAAATT+TGG | + | chr1_4:26238223-26238242 | Msa0157920:intron | 30.0% | |
| AAAAATGACTCTGATGTGAA+AGG | - | chr1_4:26238303-26238322 | None:intergenic | 30.0% | |
| !!! | TTCACATCAGAGTCATTTTT+TGG | + | chr1_4:26238303-26238322 | Msa0157920:intron | 30.0% |
| AGTAGCAATATTTCCAGCAT+AGG | - | chr1_4:26235688-26235707 | None:intergenic | 35.0% | |
| GTGCTTAATTAACAGCATAC+AGG | - | chr1_4:26235822-26235841 | None:intergenic | 35.0% | |
| ACACCTATATTAGTAAGTGG+AGG | - | chr1_4:26236032-26236051 | None:intergenic | 35.0% | |
| AGCACACCTATATTAGTAAG+TGG | - | chr1_4:26236035-26236054 | None:intergenic | 35.0% | |
| CTTAATTCATCAGTCTTCCT+CGG | + | chr1_4:26236090-26236109 | Msa0157920:intron | 35.0% | |
| !! | AAATTCTGAAGTATTCACCG+AGG | - | chr1_4:26236110-26236129 | None:intergenic | 35.0% |
| ! | TCCAATAATTTTCCTGCTTG+TGG | + | chr1_4:26236130-26236149 | Msa0157920:intron | 35.0% |
| TCCACAAGCAGGAAAATTAT+TGG | - | chr1_4:26236134-26236153 | None:intergenic | 35.0% | |
| ! | CTCTGAAAATCTAACTTCTG+AGG | - | chr1_4:26236177-26236196 | None:intergenic | 35.0% |
| ! | CTCAGAAGTTAGATTTTCAG+AGG | + | chr1_4:26236175-26236194 | Msa0157920:CDS | 35.0% |
| CCCTCTCTTCTATCTATTAT+TGG | + | chr1_4:26236400-26236419 | Msa0157920:CDS | 35.0% | |
| GAAATTAGATTCAACCACGA+GGG | + | chr1_4:26236510-26236529 | Msa0157920:intron | 35.0% | |
| AAATTAGATTCAACCACGAG+GGG | + | chr1_4:26236511-26236530 | Msa0157920:intron | 35.0% | |
| ACGTGTGAACAAATCAATCA+AGG | - | chr1_4:26236622-26236641 | None:intergenic | 35.0% | |
| ACATGTGTTTGCATCTATTC+CGG | - | chr1_4:26237036-26237055 | None:intergenic | 35.0% | |
| AGACGAAGAATTTAATGCAC+AGG | + | chr1_4:26237144-26237163 | Msa0157920:CDS | 35.0% | |
| GACGAAGAATTTAATGCACA+GGG | + | chr1_4:26237145-26237164 | Msa0157920:CDS | 35.0% | |
| AGAAACAACAGTCATAGAGT+TGG | - | chr1_4:26237336-26237355 | None:intergenic | 35.0% | |
| !! | ATGACTGTTGTTTCTTCTAG+TGG | + | chr1_4:26237341-26237360 | Msa0157920:intron | 35.0% |
| !! | TGACTGTTGTTTCTTCTAGT+GGG | + | chr1_4:26237342-26237361 | Msa0157920:intron | 35.0% |
| AAATTAGCAGCCATTGGTAA+GGG | - | chr1_4:26237503-26237522 | None:intergenic | 35.0% | |
| AAAATTAGCAGCCATTGGTA+AGG | - | chr1_4:26237504-26237523 | None:intergenic | 35.0% | |
| ! | TTACCAATGGCTGCTAATTT+TGG | + | chr1_4:26237503-26237522 | Msa0157920:intron | 35.0% |
| ATTAGAGAAGTGGTATCTGT+CGG | + | chr1_4:26237860-26237879 | Msa0157920:CDS | 35.0% | |
| GAAAGTGAATAAGCAGTTTC+TGG | + | chr1_4:26237892-26237911 | Msa0157920:intron | 35.0% | |
| CTTATTCAGTTTCACCATAC+TGG | - | chr1_4:26237926-26237945 | None:intergenic | 35.0% | |
| TCAGTAAGTATGTCTTTGGA+AGG | - | chr1_4:26237949-26237968 | None:intergenic | 35.0% | |
| AGTGCGAAATTTGAGTGAAT+CGG | + | chr1_4:26238093-26238112 | Msa0157920:intron | 35.0% | |
| TTGCCGTAGAACTGAAATTA+TGG | + | chr1_4:26238417-26238436 | Msa0157920:CDS | 35.0% | |
| ACTGAAATTATGGAAAGCGA+TGG | + | chr1_4:26238427-26238446 | Msa0157920:CDS | 35.0% | |
| TGAGAAATTTGCACCTATGC+TGG | + | chr1_4:26235672-26235691 | Msa0157920:CDS | 40.0% | |
| !! | ACAAACCTTTGAAGCAGCAT+CGG | - | chr1_4:26235713-26235732 | None:intergenic | 40.0% |
| GCAGGAGGAATATATGAACT+TGG | + | chr1_4:26235863-26235882 | Msa0157920:intron | 40.0% | |
| ATGAACTTGGAGACGTTGAA+TGG | + | chr1_4:26235876-26235895 | Msa0157920:intron | 40.0% | |
| TGAACTTGGAGACGTTGAAT+GGG | + | chr1_4:26235877-26235896 | Msa0157920:intron | 40.0% | |
| AGGAAATGATGAACCATCGT+CGG | - | chr1_4:26236012-26236031 | None:intergenic | 40.0% | |
| !! | TCTGAGGTTGATATTCACTG+AGG | - | chr1_4:26236161-26236180 | None:intergenic | 40.0% |
| AGATCAATGGAATTACGGGA+TGG | + | chr1_4:26236323-26236342 | Msa0157920:CDS | 40.0% | |
| TATGGAGAAATTTCCCCTCT+CGG | + | chr1_4:26236428-26236447 | Msa0157920:CDS | 40.0% | |
| CGAAATTAGATTCAACCACG+AGG | + | chr1_4:26236509-26236528 | Msa0157920:intron | 40.0% | |
| TGCTTCTATTGATCAGCTTG+TGG | - | chr1_4:26236564-26236583 | None:intergenic | 40.0% | |
| TCTGAGAAAGGAATCTGTTC+AGG | + | chr1_4:26236668-26236687 | Msa0157920:intron | 40.0% | |
| TGTCATGAACCAACTATCCT+TGG | + | chr1_4:26236756-26236775 | Msa0157920:intron | 40.0% | |
| ! | ATTACTTCTGAGGATGAAGC+CGG | + | chr1_4:26237014-26237033 | Msa0157920:intron | 40.0% |
| GATGCAAACACATGTGTGAA+AGG | + | chr1_4:26237041-26237060 | Msa0157920:intron | 40.0% | |
| CAGGACATATATACTCAGCA+TGG | - | chr1_4:26237441-26237460 | None:intergenic | 40.0% | |
| AATGCATGTTCCCTTACCAA+TGG | + | chr1_4:26237490-26237509 | Msa0157920:intron | 40.0% | |
| TCATGCAAGAGAGAGAAAAC+TGG | + | chr1_4:26237588-26237607 | Msa0157920:CDS | 40.0% | |
| CATGCAAGAGAGAGAAAACT+GGG | + | chr1_4:26237589-26237608 | Msa0157920:CDS | 40.0% | |
| CACTCAAATTTCGCACTTAC+TGG | - | chr1_4:26238090-26238109 | None:intergenic | 40.0% | |
| GTGCGAAATTTGAGTGAATC+GGG | + | chr1_4:26238094-26238113 | Msa0157920:intron | 40.0% | |
| TGCGAAATTTGAGTGAATCG+GGG | + | chr1_4:26238095-26238114 | Msa0157920:intron | 40.0% | |
| CTCAAGGAATTGCAAAGACT+CGG | + | chr1_4:26238160-26238179 | Msa0157920:intron | 40.0% | |
| ! | ACTTACCGATGCTGCTTCAA+AGG | + | chr1_4:26235705-26235724 | Msa0157920:CDS | 45.0% |
| TGAGCAATAGAAGGCTGAGA+TGG | - | chr1_4:26235972-26235991 | None:intergenic | 45.0% | |
| TCTCAGCCTTCTATTGCTCA+TGG | + | chr1_4:26235972-26235991 | Msa0157920:CDS | 45.0% | |
| GGAAATGATGAACCATCGTC+GGG | - | chr1_4:26236011-26236030 | None:intergenic | 45.0% | |
| ! | TGTGCTTCATAACTTGCCTG+TGG | + | chr1_4:26236049-26236068 | Msa0157920:intron | 45.0% |
| !!! | TTTTTTGGCTGGTCGTGGTA+TGG | - | chr1_4:26236250-26236269 | None:intergenic | 45.0% |
| !!! | TTCTGTTTTTTGGCTGGTCG+TGG | - | chr1_4:26236255-26236274 | None:intergenic | 45.0% |
| !! | ATTGTCGACTTACACCGAGA+GGG | - | chr1_4:26236445-26236464 | None:intergenic | 45.0% |
| GCACCAAAATTAGCAGCCAT+TGG | - | chr1_4:26237509-26237528 | None:intergenic | 45.0% | |
| !!! | GGCTGCTAATTTTGGTGCTA+AGG | + | chr1_4:26237511-26237530 | Msa0157920:intron | 45.0% |
| AGCGAATGAGAATCTTGACG+AGG | + | chr1_4:26237622-26237641 | Msa0157920:CDS | 45.0% | |
| GTGCAAACATGCAGATGTCT+CGG | - | chr1_4:26237653-26237672 | None:intergenic | 45.0% | |
| TTCTGGACAACATCCCAGTA+TGG | + | chr1_4:26237909-26237928 | Msa0157920:intron | 45.0% | |
| ATGGTTCAGAATTAGCTGCG+CGG | - | chr1_4:26238022-26238041 | None:intergenic | 45.0% | |
| GAACAGTTTGGATGAGAGCA+TGG | - | chr1_4:26238041-26238060 | None:intergenic | 45.0% | |
| GAATACTAACTGCTCGCTCA+AGG | + | chr1_4:26238144-26238163 | Msa0157920:intron | 45.0% | |
| ATTGTAACACACATGCAGCG+TGG | - | chr1_4:26238197-26238216 | None:intergenic | 45.0% | |
| TTCAGTTCTACGGCAAGACT+CGG | - | chr1_4:26238413-26238432 | None:intergenic | 45.0% | |
| TGGGTGTGTGCAAGCTCTAT+TGG | + | chr1_4:26235896-26235915 | Msa0157920:intron | 50.0% | |
| GGGTGTGTGCAAGCTCTATT+GGG | + | chr1_4:26235897-26235916 | Msa0157920:intron | 50.0% | |
| TAGTATGGCGTACCAGAAGC+AGG | + | chr1_4:26235945-26235964 | Msa0157920:intron | 50.0% | |
| AGCAGGCCATGAGCAATAGA+AGG | - | chr1_4:26235981-26236000 | None:intergenic | 50.0% | |
| ACTTGCCTGTGGAAGCAATC+TGG | + | chr1_4:26236060-26236079 | Msa0157920:intron | 50.0% | |
| AGCATCCAGATTGCTTCCAC+AGG | - | chr1_4:26236068-26236087 | None:intergenic | 50.0% | |
| ACTGAGGTCTATCCACAAGC+AGG | - | chr1_4:26236145-26236164 | None:intergenic | 50.0% | |
| !! | TTGTCGACTTACACCGAGAG+GGG | - | chr1_4:26236444-26236463 | None:intergenic | 50.0% |
| !! | CATTGTCGACTTACACCGAG+AGG | - | chr1_4:26236446-26236465 | None:intergenic | 50.0% |
| AGAATTAGCTGCGCGGCATT+GGG | - | chr1_4:26238015-26238034 | None:intergenic | 50.0% | |
| CATCGTCGGGCAAACAAAGC+AGG | - | chr1_4:26235998-26236017 | None:intergenic | 55.0% | |
| !! | CTGCTTTGTTTGCCCGACGA+TGG | + | chr1_4:26235996-26236015 | Msa0157920:CDS | 55.0% |
| CATTAGCATCTGTCCCCTCG+TGG | - | chr1_4:26236527-26236546 | None:intergenic | 55.0% | |
| CAGAATTAGCTGCGCGGCAT+TGG | - | chr1_4:26238016-26238035 | None:intergenic | 55.0% | |
| GAAAGCGATGGAGCAGTCGT+TGG | + | chr1_4:26238439-26238458 | Msa0157920:CDS | 55.0% | |
| GGCTGAGATGGTCCTGCTTC+TGG | - | chr1_4:26235960-26235979 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 26235531 | 26238468 | 26235531 | ID=Msa0157920;Name=Msa0157920 |
| chr1_4 | mRNA | 26235531 | 26238468 | 26235531 | ID=Msa0157920-mRNA-1;Parent=Msa0157920;Name=Msa0157920-mRNA-1;_AED=0.30;_eAED=0.32;_QI=0|0|0|0.9|1|1|10|0|372 |
| chr1_4 | exon | 26235531 | 26235562 | 26235531 | ID=Msa0157920-mRNA-1:exon:8745;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26235654 | 26235726 | 26235654 | ID=Msa0157920-mRNA-1:exon:8746;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26235948 | 26236047 | 26235948 | ID=Msa0157920-mRNA-1:exon:8747;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26236157 | 26236451 | 26236157 | ID=Msa0157920-mRNA-1:exon:8748;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26237141 | 26237276 | 26237141 | ID=Msa0157920-mRNA-1:exon:8749;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26237361 | 26237459 | 26237361 | ID=Msa0157920-mRNA-1:exon:8750;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26237533 | 26237643 | 26237533 | ID=Msa0157920-mRNA-1:exon:8751;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26237836 | 26237895 | 26237836 | ID=Msa0157920-mRNA-1:exon:8752;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26237978 | 26238093 | 26237978 | ID=Msa0157920-mRNA-1:exon:8753;Parent=Msa0157920-mRNA-1 |
| chr1_4 | exon | 26238372 | 26238468 | 26238372 | ID=Msa0157920-mRNA-1:exon:8754;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26235531 | 26235562 | 26235531 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26235654 | 26235726 | 26235654 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26235948 | 26236047 | 26235948 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26236157 | 26236451 | 26236157 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26237141 | 26237276 | 26237141 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26237361 | 26237459 | 26237361 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26237533 | 26237643 | 26237533 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26237836 | 26237895 | 26237836 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26237978 | 26238093 | 26237978 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| chr1_4 | CDS | 26238372 | 26238468 | 26238372 | ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
