AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0157920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157920 MtrunA17_Chr5g0438991 59.116 181 48 2 151 305 300 480 1.56e-59 207
Msa0157920 MtrunA17_Chr5g0438991 51.087 92 8 1 302 356 867 958 3.27e-17 83.6
Msa0157920 MtrunA17_Chr3g0138411 63.473 167 34 2 168 307 498 664 2.83e-58 204
Msa0157920 MtrunA17_Chr3g0138411 48.571 105 17 1 303 370 1100 1204 9.08e-20 91.3
Msa0157920 MtrunA17_Chr3g0138411 48.958 96 21 2 1 68 57 152 2.05e-13 72.0
Msa0157920 MtrunA17_Chr3g0133461 59.302 172 36 3 168 305 620 791 4.07e-54 192
Msa0157920 MtrunA17_Chr3g0133461 66.667 99 32 1 66 163 169 267 1.33e-33 132
Msa0157920 MtrunA17_Chr3g0133461 50.476 105 15 1 303 370 1237 1341 2.15e-20 93.2
Msa0157920 MtrunA17_Chr3g0133461 47.674 86 18 1 12 70 16 101 1.42e-14 75.5
Msa0157920 MtrunA17_Chr6g0456861 58.824 170 39 3 160 305 121 283 1.60e-52 186
Msa0157920 MtrunA17_Chr6g0456861 47.059 102 15 2 303 365 671 772 1.12e-17 84.7
Msa0157920 MtrunA17_Chr6g0456851 52.410 166 49 3 168 305 417 580 2.15e-44 163
Msa0157920 MtrunA17_Chr4g0000031 39.216 153 65 3 178 303 1004 1155 7.61e-21 94.7
Msa0157920 MtrunA17_Chr5g0402011 80.645 31 6 0 213 243 21 51 4.81e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0157920 AT1G79000.2 40.523 153 63 3 178 303 991 1142 3.74e-25 108
Msa0157920 AT1G79000.3 40.523 153 63 3 178 303 967 1118 3.78e-25 108
Msa0157920 AT1G79000.1 40.523 153 63 3 178 303 991 1142 3.79e-25 108
Msa0157920 AT3G12980.2 34.568 162 76 5 178 311 891 1050 1.58e-22 100
Msa0157920 AT3G12980.1 34.568 162 76 5 178 311 972 1131 1.63e-22 100
Msa0157920 AT1G16710.9 38.346 133 54 3 178 283 974 1105 3.09e-20 93.2
Msa0157920 AT1G16710.2 39.869 153 64 3 178 303 971 1122 4.50e-20 92.8
Msa0157920 AT1G16710.3 39.869 153 64 3 178 303 974 1125 4.59e-20 92.8
Msa0157920 AT1G16710.10 39.869 153 64 3 178 303 974 1125 4.59e-20 92.8
Msa0157920 AT1G16710.8 39.869 153 64 3 178 303 974 1125 4.59e-20 92.8
Msa0157920 AT1G16710.7 39.869 153 64 3 178 303 974 1125 4.59e-20 92.8
Msa0157920 AT1G16710.1 39.869 153 64 3 178 303 1000 1151 5.09e-20 92.8
Msa0157920 AT1G16710.6 39.869 153 64 3 178 303 935 1086 5.14e-20 92.8
Msa0157920 AT1G16710.4 39.869 153 64 3 178 303 935 1086 5.14e-20 92.8
Msa0157920 AT1G16710.5 39.869 153 64 3 178 303 935 1086 5.14e-20 92.8
Msa0157920 AT1G55970.2 33.333 153 74 3 178 303 766 917 1.89e-19 90.9
Msa0157920 AT1G55970.1 33.333 153 74 3 178 303 766 917 1.95e-19 90.9
Msa0157920 AT1G67220.1 35.088 171 83 4 169 312 681 850 2.98e-17 84.3

Find 59 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCTCTTCTATCTATTAT+TGG 0.115588 1_4:+26236400 Msa0157920:CDS
AAATGGTATACAATCGTAAT+TGG 0.256210 1_4:+26235529 None:intergenic
AAAATGATGGATTCAGGTTT+TGG 0.264675 1_4:+26236273 Msa0157920:CDS
TCAAGATTCTTCGTAGAAAT+AGG 0.266809 1_4:-26237220 None:intergenic
AGAAGTGTTTGAAAATAATA+TGG 0.274421 1_4:-26236351 None:intergenic
TATCTATTATTGGAACAATA+TGG 0.282393 1_4:+26236410 Msa0157920:CDS
AAACAGAAAATGATGGATTC+AGG 0.292391 1_4:+26236267 Msa0157920:CDS
TTGCCGTAGAACTGAAATTA+TGG 0.308379 1_4:+26238417 Msa0157920:CDS
CTACAACATCAAAAGAGATT+TGG 0.310781 1_4:+26237411 Msa0157920:CDS
GGCTGAGATGGTCCTGCTTC+TGG 0.322019 1_4:-26235957 None:intergenic
TTTCCTCCACTTACTAATAT+AGG 0.323638 1_4:+26236026 Msa0157920:CDS
ATGGATTCAGATTTACTAGA+AGG 0.348094 1_4:-26236228 None:intergenic
AGTTTAGATCAATGGAATTA+CGG 0.368731 1_4:+26236318 Msa0157920:CDS
GTTTAGATCAATGGAATTAC+GGG 0.382219 1_4:+26236319 Msa0157920:CDS
CAGAATTAGCTGCGCGGCAT+TGG 0.385942 1_4:-26238013 None:intergenic
CATTGAAATACTTGAAGAAC+CGG 0.413709 1_4:+26237255 Msa0157920:CDS
TGAGAAATTTGCACCTATGC+TGG 0.423508 1_4:+26235672 Msa0157920:CDS
TCATGCAAGAGAGAGAAAAC+TGG 0.430015 1_4:+26237588 Msa0157920:CDS
ATCATTAACATGTCTTATAG+TGG 0.430271 1_4:-26236202 None:intergenic
AGAATTAGCTGCGCGGCATT+GGG 0.434067 1_4:-26238012 None:intergenic
ACTATCAAAGTTTAGATCAA+TGG 0.450536 1_4:+26236310 Msa0157920:CDS
TTTCCATAATTTCAGTTCTA+CGG 0.452548 1_4:-26238420 None:intergenic
TTCTTGATTTGAGAACAGTT+TGG 0.456469 1_4:-26238050 None:intergenic
AGCAGGCCATGAGCAATAGA+AGG 0.474315 1_4:-26235978 None:intergenic
AGACGAAGAATTTAATGCAC+AGG 0.489577 1_4:+26237144 Msa0157920:CDS
ACTTACCGATGCTGCTTCAA+AGG 0.495751 1_4:+26235705 Msa0157920:CDS
TCCAATAATAGATAGAAGAG+AGG 0.523721 1_4:-26236401 None:intergenic
CATCGTCGGGCAAACAAAGC+AGG 0.524987 1_4:-26235995 None:intergenic
TCTCAGCCTTCTATTGCTCA+TGG 0.533552 1_4:+26235972 Msa0157920:CDS
TTCAGTTCTACGGCAAGACT+CGG 0.534719 1_4:-26238410 None:intergenic
AAGTCTTTCTATTAGAGAAG+TGG 0.536596 1_4:+26237850 Msa0157920:CDS
CTGCTTTGTTTGCCCGACGA+TGG 0.540567 1_4:+26235996 Msa0157920:CDS
CTCTGAAAATCTAACTTCTG+AGG 0.541761 1_4:-26236174 None:intergenic
TAGTATGGCGTACCAGAAGC+AGG 0.542587 1_4:+26235945 Msa0157920:intron
GGAAATGATGAACCATCGTC+GGG 0.545770 1_4:-26236008 None:intergenic
TATGGAGAAATTTCCCCTCT+CGG 0.556977 1_4:+26236428 Msa0157920:CDS
CATGCAAGAGAGAGAAAACT+GGG 0.565706 1_4:+26237589 Msa0157920:CDS
GAACAGTTTGGATGAGAGCA+TGG 0.567280 1_4:-26238038 None:intergenic
GACGAAGAATTTAATGCACA+GGG 0.569692 1_4:+26237145 Msa0157920:CDS
AGTAGCAATATTTCCAGCAT+AGG 0.573201 1_4:-26235685 None:intergenic
AGCACACCTATATTAGTAAG+TGG 0.587225 1_4:-26236032 None:intergenic
ACTGAAATTATGGAAAGCGA+TGG 0.587396 1_4:+26238427 Msa0157920:CDS
TGAGCAATAGAAGGCTGAGA+TGG 0.590756 1_4:-26235969 None:intergenic
CCAATAATAGATAGAAGAGA+GGG 0.591142 1_4:-26236400 None:intergenic
ACAAACCTTTGAAGCAGCAT+CGG 0.591436 1_4:-26235710 None:intergenic
GAAAGCGATGGAGCAGTCGT+TGG 0.592154 1_4:+26238439 Msa0157920:CDS
TGGATTCAGATTTACTAGAA+GGG 0.594398 1_4:-26236227 None:intergenic
AATGTGATAAATGCAAAAGA+TGG 0.600930 1_4:+26237368 Msa0157920:CDS
AGGAAATGATGAACCATCGT+CGG 0.601265 1_4:-26236009 None:intergenic
AGATCAATGGAATTACGGGA+TGG 0.604111 1_4:+26236323 Msa0157920:CDS
ATTAGAGAAGTGGTATCTGT+CGG 0.611985 1_4:+26237860 Msa0157920:CDS
TTGTCGACTTACACCGAGAG+GGG 0.649942 1_4:-26236441 None:intergenic
ACACCTATATTAGTAAGTGG+AGG 0.663456 1_4:-26236029 None:intergenic
CAGGACATATATACTCAGCA+TGG 0.677779 1_4:-26237438 None:intergenic
ATTGTCGACTTACACCGAGA+GGG 0.681643 1_4:-26236442 None:intergenic
AGCGAATGAGAATCTTGACG+AGG 0.722253 1_4:+26237622 Msa0157920:CDS
CATTGTCGACTTACACCGAG+AGG 0.723290 1_4:-26236443 None:intergenic
TCTGAGGTTGATATTCACTG+AGG 0.737127 1_4:-26236158 None:intergenic
ATGGTTCAGAATTAGCTGCG+CGG 0.767373 1_4:-26238019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTGTTTTTATACAAATT+TGG + chr1_4:26235841-26235860 Msa0157920:intron 15.0%
!! TAATTGATATTTAAACTTAC+CGG - chr1_4:26237277-26237296 None:intergenic 15.0%
!!! ATTTTCAATTTTGTTTTAAG+TGG - chr1_4:26237468-26237487 None:intergenic 15.0%
!! ACTTAAAACAAAATTGAAAA+TGG + chr1_4:26237467-26237486 Msa0157920:intron 15.0%
!!! TATTACTATTTTCAATTTAC+AGG - chr1_4:26237718-26237737 None:intergenic 15.0%
!!! TTTTCAAAGCAATATATATT+TGG - chr1_4:26237785-26237804 None:intergenic 15.0%
!!! ATATAATTTTCACAGAAATG+TGG + chr1_4:26235576-26235595 Msa0157920:intron 20.0%
!!! AGAAGTGTTTGAAAATAATA+TGG - chr1_4:26236354-26236373 None:intergenic 20.0%
!!! ATATTATTTTCAAACACTTC+TGG + chr1_4:26236353-26236372 Msa0157920:CDS 20.0%
!! TATCTATTATTGGAACAATA+TGG + chr1_4:26236410-26236429 Msa0157920:CDS 20.0%
!!! TACAAATATGTTTTGTTGTT+TGG - chr1_4:26236647-26236666 None:intergenic 20.0%
!!! TGTTTTTATACAAATTTGGC+AGG + chr1_4:26235845-26235864 Msa0157920:intron 25.0%
! TATCCAGTATTATAAGACTT+AGG - chr1_4:26235927-26235946 None:intergenic 25.0%
! TCTTATAATACTGGATAGTA+TGG + chr1_4:26235930-26235949 Msa0157920:intron 25.0%
! ATCATTAACATGTCTTATAG+TGG - chr1_4:26236205-26236224 None:intergenic 25.0%
!!! ATCCATCATTTTCTGTTTTT+TGG - chr1_4:26236265-26236284 None:intergenic 25.0%
! ACTATCAAAGTTTAGATCAA+TGG + chr1_4:26236310-26236329 Msa0157920:CDS 25.0%
! AGTTTAGATCAATGGAATTA+CGG + chr1_4:26236318-26236337 Msa0157920:CDS 25.0%
!!! TGTTAATATTGATGATGAAG+AGG + chr1_4:26236476-26236495 Msa0157920:intron 25.0%
! AGTAATATCTAAACAGATCA+AGG - chr1_4:26236725-26236744 None:intergenic 25.0%
! TATATGTAAATTGCAGGAAT+AGG - chr1_4:26236928-26236947 None:intergenic 25.0%
! TATGCATATATGTAAATTGC+AGG - chr1_4:26236934-26236953 None:intergenic 25.0%
! CACAATATAAGCAAAAAAGT+GGG - chr1_4:26237090-26237109 None:intergenic 25.0%
! TCACAATATAAGCAAAAAAG+TGG - chr1_4:26237091-26237110 None:intergenic 25.0%
! ACTTCAAAAATCACATTCAA+TGG + chr1_4:26237193-26237212 Msa0157920:CDS 25.0%
! AATGTGATAAATGCAAAAGA+TGG + chr1_4:26237368-26237387 Msa0157920:CDS 25.0%
! CTTATTGATCTGAATATTGT+AGG + chr1_4:26237814-26237833 Msa0157920:intron 25.0%
! ACCATATATTCTTACAATGT+TGG - chr1_4:26238124-26238143 None:intergenic 25.0%
!! GAATATCCAAATTTTCTAAG+TGG - chr1_4:26238232-26238251 None:intergenic 25.0%
! TTTCCATAATTTCAGTTCTA+CGG - chr1_4:26238423-26238442 None:intergenic 25.0%
CTTGCATTTGATACTCTTAT+TGG - chr1_4:26235794-26235813 None:intergenic 30.0%
! TTTTATACAAATTTGGCAGG+AGG + chr1_4:26235848-26235867 Msa0157920:intron 30.0%
! GTTCCTAAGTCTTATAATAC+TGG + chr1_4:26235921-26235940 Msa0157920:intron 30.0%
TTTCCTCCACTTACTAATAT+AGG + chr1_4:26236026-26236045 Msa0157920:CDS 30.0%
TGGATTCAGATTTACTAGAA+GGG - chr1_4:26236230-26236249 None:intergenic 30.0%
ATGGATTCAGATTTACTAGA+AGG - chr1_4:26236231-26236250 None:intergenic 30.0%
!!! ATCATTTTCTGTTTTTTGGC+TGG - chr1_4:26236261-26236280 None:intergenic 30.0%
AGCCAAAAAACAGAAAATGA+TGG + chr1_4:26236260-26236279 Msa0157920:CDS 30.0%
!! AAACAGAAAATGATGGATTC+AGG + chr1_4:26236267-26236286 Msa0157920:CDS 30.0%
!!! AAAATGATGGATTCAGGTTT+TGG + chr1_4:26236273-26236292 Msa0157920:CDS 30.0%
GTTTAGATCAATGGAATTAC+GGG + chr1_4:26236319-26236338 Msa0157920:CDS 30.0%
CCAATAATAGATAGAAGAGA+GGG - chr1_4:26236403-26236422 None:intergenic 30.0%
TCCAATAATAGATAGAAGAG+AGG - chr1_4:26236404-26236423 None:intergenic 30.0%
ATCATCAACTATCGTATTTG+AGG - chr1_4:26236595-26236614 None:intergenic 30.0%
ACATATTTGTAGTCTGAGAA+AGG + chr1_4:26236656-26236675 Msa0157920:intron 30.0%
TAATTGAAAACACTAGAAGG+TGG - chr1_4:26236702-26236721 None:intergenic 30.0%
AGGTAATTGAAAACACTAGA+AGG - chr1_4:26236705-26236724 None:intergenic 30.0%
ATATAACATCCAAGGATAGT+TGG - chr1_4:26236768-26236787 None:intergenic 30.0%
ACATGCATATATAACATCCA+AGG - chr1_4:26236776-26236795 None:intergenic 30.0%
! AAGAGTTGTTAGCTTCTATA+TGG - chr1_4:26236985-26237004 None:intergenic 30.0%
TTTAACACAGATTACTTCTG+AGG + chr1_4:26237004-26237023 Msa0157920:intron 30.0%
TATAAGCAAAAAAGTGGGAT+TGG - chr1_4:26237085-26237104 None:intergenic 30.0%
TCAAGATTCTTCGTAGAAAT+AGG - chr1_4:26237223-26237242 None:intergenic 30.0%
CTACGAAGAATCTTGAAAAA+AGG + chr1_4:26237227-26237246 Msa0157920:CDS 30.0%
CATTGAAATACTTGAAGAAC+CGG + chr1_4:26237255-26237274 Msa0157920:CDS 30.0%
CTACAACATCAAAAGAGATT+TGG + chr1_4:26237411-26237430 Msa0157920:CDS 30.0%
!!! TTTTGTTTTAAGTGGCATAC+AGG - chr1_4:26237460-26237479 None:intergenic 30.0%
! CAAAATGTCTTTTCTCTAAG+TGG - chr1_4:26237562-26237581 None:intergenic 30.0%
AAGTCTTTCTATTAGAGAAG+TGG + chr1_4:26237850-26237869 Msa0157920:CDS 30.0%
TTATTCAGTTTCACCATACT+GGG - chr1_4:26237925-26237944 None:intergenic 30.0%
TAAGTCAGTAAGTATGTCTT+TGG - chr1_4:26237953-26237972 None:intergenic 30.0%
! TTCTTGATTTGAGAACAGTT+TGG - chr1_4:26238053-26238072 None:intergenic 30.0%
GCCAACATTGTAAGAATATA+TGG + chr1_4:26238120-26238139 Msa0157920:intron 30.0%
TCTACACCACTTAGAAAATT+TGG + chr1_4:26238223-26238242 Msa0157920:intron 30.0%
AAAAATGACTCTGATGTGAA+AGG - chr1_4:26238303-26238322 None:intergenic 30.0%
!!! TTCACATCAGAGTCATTTTT+TGG + chr1_4:26238303-26238322 Msa0157920:intron 30.0%
AGTAGCAATATTTCCAGCAT+AGG - chr1_4:26235688-26235707 None:intergenic 35.0%
GTGCTTAATTAACAGCATAC+AGG - chr1_4:26235822-26235841 None:intergenic 35.0%
ACACCTATATTAGTAAGTGG+AGG - chr1_4:26236032-26236051 None:intergenic 35.0%
AGCACACCTATATTAGTAAG+TGG - chr1_4:26236035-26236054 None:intergenic 35.0%
CTTAATTCATCAGTCTTCCT+CGG + chr1_4:26236090-26236109 Msa0157920:intron 35.0%
!! AAATTCTGAAGTATTCACCG+AGG - chr1_4:26236110-26236129 None:intergenic 35.0%
! TCCAATAATTTTCCTGCTTG+TGG + chr1_4:26236130-26236149 Msa0157920:intron 35.0%
TCCACAAGCAGGAAAATTAT+TGG - chr1_4:26236134-26236153 None:intergenic 35.0%
! CTCTGAAAATCTAACTTCTG+AGG - chr1_4:26236177-26236196 None:intergenic 35.0%
! CTCAGAAGTTAGATTTTCAG+AGG + chr1_4:26236175-26236194 Msa0157920:CDS 35.0%
CCCTCTCTTCTATCTATTAT+TGG + chr1_4:26236400-26236419 Msa0157920:CDS 35.0%
GAAATTAGATTCAACCACGA+GGG + chr1_4:26236510-26236529 Msa0157920:intron 35.0%
AAATTAGATTCAACCACGAG+GGG + chr1_4:26236511-26236530 Msa0157920:intron 35.0%
ACGTGTGAACAAATCAATCA+AGG - chr1_4:26236622-26236641 None:intergenic 35.0%
ACATGTGTTTGCATCTATTC+CGG - chr1_4:26237036-26237055 None:intergenic 35.0%
AGACGAAGAATTTAATGCAC+AGG + chr1_4:26237144-26237163 Msa0157920:CDS 35.0%
GACGAAGAATTTAATGCACA+GGG + chr1_4:26237145-26237164 Msa0157920:CDS 35.0%
AGAAACAACAGTCATAGAGT+TGG - chr1_4:26237336-26237355 None:intergenic 35.0%
!! ATGACTGTTGTTTCTTCTAG+TGG + chr1_4:26237341-26237360 Msa0157920:intron 35.0%
!! TGACTGTTGTTTCTTCTAGT+GGG + chr1_4:26237342-26237361 Msa0157920:intron 35.0%
AAATTAGCAGCCATTGGTAA+GGG - chr1_4:26237503-26237522 None:intergenic 35.0%
AAAATTAGCAGCCATTGGTA+AGG - chr1_4:26237504-26237523 None:intergenic 35.0%
! TTACCAATGGCTGCTAATTT+TGG + chr1_4:26237503-26237522 Msa0157920:intron 35.0%
ATTAGAGAAGTGGTATCTGT+CGG + chr1_4:26237860-26237879 Msa0157920:CDS 35.0%
GAAAGTGAATAAGCAGTTTC+TGG + chr1_4:26237892-26237911 Msa0157920:intron 35.0%
CTTATTCAGTTTCACCATAC+TGG - chr1_4:26237926-26237945 None:intergenic 35.0%
TCAGTAAGTATGTCTTTGGA+AGG - chr1_4:26237949-26237968 None:intergenic 35.0%
AGTGCGAAATTTGAGTGAAT+CGG + chr1_4:26238093-26238112 Msa0157920:intron 35.0%
TTGCCGTAGAACTGAAATTA+TGG + chr1_4:26238417-26238436 Msa0157920:CDS 35.0%
ACTGAAATTATGGAAAGCGA+TGG + chr1_4:26238427-26238446 Msa0157920:CDS 35.0%
TGAGAAATTTGCACCTATGC+TGG + chr1_4:26235672-26235691 Msa0157920:CDS 40.0%
!! ACAAACCTTTGAAGCAGCAT+CGG - chr1_4:26235713-26235732 None:intergenic 40.0%
GCAGGAGGAATATATGAACT+TGG + chr1_4:26235863-26235882 Msa0157920:intron 40.0%
ATGAACTTGGAGACGTTGAA+TGG + chr1_4:26235876-26235895 Msa0157920:intron 40.0%
TGAACTTGGAGACGTTGAAT+GGG + chr1_4:26235877-26235896 Msa0157920:intron 40.0%
AGGAAATGATGAACCATCGT+CGG - chr1_4:26236012-26236031 None:intergenic 40.0%
!! TCTGAGGTTGATATTCACTG+AGG - chr1_4:26236161-26236180 None:intergenic 40.0%
AGATCAATGGAATTACGGGA+TGG + chr1_4:26236323-26236342 Msa0157920:CDS 40.0%
TATGGAGAAATTTCCCCTCT+CGG + chr1_4:26236428-26236447 Msa0157920:CDS 40.0%
CGAAATTAGATTCAACCACG+AGG + chr1_4:26236509-26236528 Msa0157920:intron 40.0%
TGCTTCTATTGATCAGCTTG+TGG - chr1_4:26236564-26236583 None:intergenic 40.0%
TCTGAGAAAGGAATCTGTTC+AGG + chr1_4:26236668-26236687 Msa0157920:intron 40.0%
TGTCATGAACCAACTATCCT+TGG + chr1_4:26236756-26236775 Msa0157920:intron 40.0%
! ATTACTTCTGAGGATGAAGC+CGG + chr1_4:26237014-26237033 Msa0157920:intron 40.0%
GATGCAAACACATGTGTGAA+AGG + chr1_4:26237041-26237060 Msa0157920:intron 40.0%
CAGGACATATATACTCAGCA+TGG - chr1_4:26237441-26237460 None:intergenic 40.0%
AATGCATGTTCCCTTACCAA+TGG + chr1_4:26237490-26237509 Msa0157920:intron 40.0%
TCATGCAAGAGAGAGAAAAC+TGG + chr1_4:26237588-26237607 Msa0157920:CDS 40.0%
CATGCAAGAGAGAGAAAACT+GGG + chr1_4:26237589-26237608 Msa0157920:CDS 40.0%
CACTCAAATTTCGCACTTAC+TGG - chr1_4:26238090-26238109 None:intergenic 40.0%
GTGCGAAATTTGAGTGAATC+GGG + chr1_4:26238094-26238113 Msa0157920:intron 40.0%
TGCGAAATTTGAGTGAATCG+GGG + chr1_4:26238095-26238114 Msa0157920:intron 40.0%
CTCAAGGAATTGCAAAGACT+CGG + chr1_4:26238160-26238179 Msa0157920:intron 40.0%
! ACTTACCGATGCTGCTTCAA+AGG + chr1_4:26235705-26235724 Msa0157920:CDS 45.0%
TGAGCAATAGAAGGCTGAGA+TGG - chr1_4:26235972-26235991 None:intergenic 45.0%
TCTCAGCCTTCTATTGCTCA+TGG + chr1_4:26235972-26235991 Msa0157920:CDS 45.0%
GGAAATGATGAACCATCGTC+GGG - chr1_4:26236011-26236030 None:intergenic 45.0%
! TGTGCTTCATAACTTGCCTG+TGG + chr1_4:26236049-26236068 Msa0157920:intron 45.0%
!!! TTTTTTGGCTGGTCGTGGTA+TGG - chr1_4:26236250-26236269 None:intergenic 45.0%
!!! TTCTGTTTTTTGGCTGGTCG+TGG - chr1_4:26236255-26236274 None:intergenic 45.0%
!! ATTGTCGACTTACACCGAGA+GGG - chr1_4:26236445-26236464 None:intergenic 45.0%
GCACCAAAATTAGCAGCCAT+TGG - chr1_4:26237509-26237528 None:intergenic 45.0%
!!! GGCTGCTAATTTTGGTGCTA+AGG + chr1_4:26237511-26237530 Msa0157920:intron 45.0%
AGCGAATGAGAATCTTGACG+AGG + chr1_4:26237622-26237641 Msa0157920:CDS 45.0%
GTGCAAACATGCAGATGTCT+CGG - chr1_4:26237653-26237672 None:intergenic 45.0%
TTCTGGACAACATCCCAGTA+TGG + chr1_4:26237909-26237928 Msa0157920:intron 45.0%
ATGGTTCAGAATTAGCTGCG+CGG - chr1_4:26238022-26238041 None:intergenic 45.0%
GAACAGTTTGGATGAGAGCA+TGG - chr1_4:26238041-26238060 None:intergenic 45.0%
GAATACTAACTGCTCGCTCA+AGG + chr1_4:26238144-26238163 Msa0157920:intron 45.0%
ATTGTAACACACATGCAGCG+TGG - chr1_4:26238197-26238216 None:intergenic 45.0%
TTCAGTTCTACGGCAAGACT+CGG - chr1_4:26238413-26238432 None:intergenic 45.0%
TGGGTGTGTGCAAGCTCTAT+TGG + chr1_4:26235896-26235915 Msa0157920:intron 50.0%
GGGTGTGTGCAAGCTCTATT+GGG + chr1_4:26235897-26235916 Msa0157920:intron 50.0%
TAGTATGGCGTACCAGAAGC+AGG + chr1_4:26235945-26235964 Msa0157920:intron 50.0%
AGCAGGCCATGAGCAATAGA+AGG - chr1_4:26235981-26236000 None:intergenic 50.0%
ACTTGCCTGTGGAAGCAATC+TGG + chr1_4:26236060-26236079 Msa0157920:intron 50.0%
AGCATCCAGATTGCTTCCAC+AGG - chr1_4:26236068-26236087 None:intergenic 50.0%
ACTGAGGTCTATCCACAAGC+AGG - chr1_4:26236145-26236164 None:intergenic 50.0%
!! TTGTCGACTTACACCGAGAG+GGG - chr1_4:26236444-26236463 None:intergenic 50.0%
!! CATTGTCGACTTACACCGAG+AGG - chr1_4:26236446-26236465 None:intergenic 50.0%
AGAATTAGCTGCGCGGCATT+GGG - chr1_4:26238015-26238034 None:intergenic 50.0%
CATCGTCGGGCAAACAAAGC+AGG - chr1_4:26235998-26236017 None:intergenic 55.0%
!! CTGCTTTGTTTGCCCGACGA+TGG + chr1_4:26235996-26236015 Msa0157920:CDS 55.0%
CATTAGCATCTGTCCCCTCG+TGG - chr1_4:26236527-26236546 None:intergenic 55.0%
CAGAATTAGCTGCGCGGCAT+TGG - chr1_4:26238016-26238035 None:intergenic 55.0%
GAAAGCGATGGAGCAGTCGT+TGG + chr1_4:26238439-26238458 Msa0157920:CDS 55.0%
GGCTGAGATGGTCCTGCTTC+TGG - chr1_4:26235960-26235979 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 26235531 26238468 26235531 ID=Msa0157920;Name=Msa0157920
chr1_4 mRNA 26235531 26238468 26235531 ID=Msa0157920-mRNA-1;Parent=Msa0157920;Name=Msa0157920-mRNA-1;_AED=0.30;_eAED=0.32;_QI=0|0|0|0.9|1|1|10|0|372
chr1_4 exon 26235531 26235562 26235531 ID=Msa0157920-mRNA-1:exon:8745;Parent=Msa0157920-mRNA-1
chr1_4 exon 26235654 26235726 26235654 ID=Msa0157920-mRNA-1:exon:8746;Parent=Msa0157920-mRNA-1
chr1_4 exon 26235948 26236047 26235948 ID=Msa0157920-mRNA-1:exon:8747;Parent=Msa0157920-mRNA-1
chr1_4 exon 26236157 26236451 26236157 ID=Msa0157920-mRNA-1:exon:8748;Parent=Msa0157920-mRNA-1
chr1_4 exon 26237141 26237276 26237141 ID=Msa0157920-mRNA-1:exon:8749;Parent=Msa0157920-mRNA-1
chr1_4 exon 26237361 26237459 26237361 ID=Msa0157920-mRNA-1:exon:8750;Parent=Msa0157920-mRNA-1
chr1_4 exon 26237533 26237643 26237533 ID=Msa0157920-mRNA-1:exon:8751;Parent=Msa0157920-mRNA-1
chr1_4 exon 26237836 26237895 26237836 ID=Msa0157920-mRNA-1:exon:8752;Parent=Msa0157920-mRNA-1
chr1_4 exon 26237978 26238093 26237978 ID=Msa0157920-mRNA-1:exon:8753;Parent=Msa0157920-mRNA-1
chr1_4 exon 26238372 26238468 26238372 ID=Msa0157920-mRNA-1:exon:8754;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26235531 26235562 26235531 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26235654 26235726 26235654 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26235948 26236047 26235948 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26236157 26236451 26236157 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26237141 26237276 26237141 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26237361 26237459 26237361 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26237533 26237643 26237533 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26237836 26237895 26237836 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26237978 26238093 26237978 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4 CDS 26238372 26238468 26238372 ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
Gene Sequence

>Msa0157920

ATGGTATACAATCGTAATTGGATAAGAGAAATTTTTGAAATCATTCAGAATGAGAAATTTGCACCTATGCTGGAAATATTGCTACTTACCGATGCTGCTTCAAAGTATGGCGTACCAGAAGCAGGACCATCTCAGCCTTCTATTGCTCATGGCCTGCTTTGTTTGCCCGACGATGGTTCATCATTTCCTCCACTTACTAATATAGACCTCAGTGAATATCAACCTCAGAAGTTAGATTTTCAGAGGAATTCCACTATAAGACATGTTAATGATGTCCCTTCTAGTAAATCTGAATCCATACCACGACCAGCCAAAAAACAGAAAATGATGGATTCAGGTTTTGGTGTATCTTCGACTAACTATCAAAGTTTAGATCAATGGAATTACGGGATGGTTCAACCATATTATTTTCAAACACTTCTGGAAGTGCAGAAACAGTCAGAATTTTCCCTCTCTTCTATCTATTATTGGAACAATATGGAGAAATTTCCCCTCTCGGTAAAAGACGAAGAATTTAATGCACAGGGTTGCATTTGCTCAGTGTGTTATAAGACTTCAAAAATCACATTCAATGGAACACCTATTTCTACGAAGAATCTTGAAAAAAGGAATAACATTGAAATACTTGAAGAACCGTGGGTTGAATGTGATAAATGCAAAAGATGGCAGCATCAAATTTGTGCAATCTACAACATCAAAAGAGATTTGGATTGCCATGCTGAGTATATATGTCCTGACTTGTCGATAACTGTGCTAAGTGACCACTTAGAGAAAAGACATTTTGAGAGTCTCATGCAAGAGAGAGAAAACTGGGAAAAAGTTGAAGCGAATGAGAATCTTGACGAGGTTTTTGCATCAGAAAGTCTTTCTATTAGAGAAGTGGTATCTGTCGGCAAGAAACTGAAAATGTTGAAACTGCTGAACGTTTTGAAGCATGCATCCCAATGCCGCGCAGCTAATTCTGAACCATGCTCTCATCCAAACTGTTCTCAAATCAAGAAGTTGTTCTTTCATGCCAGTAATGATCTGAAGAAGCATGTAGAACAAAGATCAATGCATTCCGAGTCTTGCCGTAGAACTGAAATTATGGAAAGCGATGGAGCAGTCGTTGGCAAATAA

Protein sequence

>Msa0157920

MVYNRNWIREIFEIIQNEKFAPMLEILLLTDAASKYGVPEAGPSQPSIAHGLLCLPDDGSSFPPLTNIDLSEYQPQKLDFQRNSTIRHVNDVPSSKSESIPRPAKKQKMMDSGFGVSSTNYQSLDQWNYGMVQPYYFQTLLEVQKQSEFSLSSIYYWNNMEKFPLSVKDEEFNAQGCICSVCYKTSKITFNGTPISTKNLEKRNNIEILEEPWVECDKCKRWQHQICAIYNIKRDLDCHAEYICPDLSITVLSDHLEKRHFESLMQERENWEKVEANENLDEVFASESLSIREVVSVGKKLKMLKLLNVLKHASQCRAANSEPCSHPNCSQIKKLFFHASNDLKKHVEQRSMHSESCRRTEIMESDGAVVGK*