AlfalfaGEDB | Msa0157920

M. sativa cultivar zhongmu-4 / Msa0157920

KEGG: K04498
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157920	RHN57311.1	51.087	92	8	1	302	356	867	958	3.55e-13	83.6
Msa0157920	RHN57311.1	59.116	181	48	2	151	305	300	480	1.69e-55	207

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157920	sp\|Q9C5X9\|HAC1_ARATH	40.523	153	63	3	178	303	991	1142	3.73e-24	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157920	A0A396HXK4	51.087	92	8	1	302	356	867	958	1.70e-13	83.6
Msa0157920	A0A396HXK4	59.116	181	48	2	151	305	300	480	8.09e-56	207

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TFs/TRs:

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Gene ID	Type	Classification
Msa0157920	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157920	MtrunA17_Chr5g0438991	59.116	181	48	2	151	305	300	480	1.56e-59	207
Msa0157920	MtrunA17_Chr5g0438991	51.087	92	8	1	302	356	867	958	3.27e-17	83.6
Msa0157920	MtrunA17_Chr3g0138411	63.473	167	34	2	168	307	498	664	2.83e-58	204
Msa0157920	MtrunA17_Chr3g0138411	48.571	105	17	1	303	370	1100	1204	9.08e-20	91.3
Msa0157920	MtrunA17_Chr3g0138411	48.958	96	21	2	1	68	57	152	2.05e-13	72.0
Msa0157920	MtrunA17_Chr3g0133461	59.302	172	36	3	168	305	620	791	4.07e-54	192
Msa0157920	MtrunA17_Chr3g0133461	66.667	99	32	1	66	163	169	267	1.33e-33	132
Msa0157920	MtrunA17_Chr3g0133461	50.476	105	15	1	303	370	1237	1341	2.15e-20	93.2
Msa0157920	MtrunA17_Chr3g0133461	47.674	86	18	1	12	70	16	101	1.42e-14	75.5
Msa0157920	MtrunA17_Chr6g0456861	58.824	170	39	3	160	305	121	283	1.60e-52	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0157920	AT1G79000.2	40.523	153	63	3	178	303	991	1142	3.74e-25	108
Msa0157920	AT1G79000.3	40.523	153	63	3	178	303	967	1118	3.78e-25	108
Msa0157920	AT1G79000.1	40.523	153	63	3	178	303	991	1142	3.79e-25	108
Msa0157920	AT3G12980.2	34.568	162	76	5	178	311	891	1050	1.58e-22	100
Msa0157920	AT3G12980.1	34.568	162	76	5	178	311	972	1131	1.63e-22	100
Msa0157920	AT1G16710.9	38.346	133	54	3	178	283	974	1105	3.09e-20	93.2
Msa0157920	AT1G16710.2	39.869	153	64	3	178	303	971	1122	4.50e-20	92.8
Msa0157920	AT1G16710.3	39.869	153	64	3	178	303	974	1125	4.59e-20	92.8
Msa0157920	AT1G16710.10	39.869	153	64	3	178	303	974	1125	4.59e-20	92.8
Msa0157920	AT1G16710.8	39.869	153	64	3	178	303	974	1125	4.59e-20	92.8

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Find 59 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGATGGATTCAGGTTT+TGG	0.264675	1_4:+26236273	Msa0157920:CDS
AAACAGAAAATGATGGATTC+AGG	0.292391	1_4:+26236267	Msa0157920:CDS
AAATGGTATACAATCGTAAT+TGG	0.256210	1_4:+26235529	None:intergenic
AAGTCTTTCTATTAGAGAAG+TGG	0.536596	1_4:+26237850	Msa0157920:CDS
AATGTGATAAATGCAAAAGA+TGG	0.600930	1_4:+26237368	Msa0157920:CDS
ACAAACCTTTGAAGCAGCAT+CGG	0.591436	1_4:-26235710	None:intergenic
ACACCTATATTAGTAAGTGG+AGG	0.663456	1_4:-26236029	None:intergenic
ACTATCAAAGTTTAGATCAA+TGG	0.450536	1_4:+26236310	Msa0157920:CDS
ACTGAAATTATGGAAAGCGA+TGG	0.587396	1_4:+26238427	Msa0157920:CDS
ACTTACCGATGCTGCTTCAA+AGG	0.495751	1_4:+26235705	Msa0157920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGCATTTGATACTCTTAT+TGG	-	chr1_4:26235794-26235813	None:intergenic	30.0%
TTTCCTCCACTTACTAATAT+AGG	+	chr1_4:26236026-26236045	Msa0157920:CDS	30.0%
TGGATTCAGATTTACTAGAA+GGG	-	chr1_4:26236230-26236249	None:intergenic	30.0%
ATGGATTCAGATTTACTAGA+AGG	-	chr1_4:26236231-26236250	None:intergenic	30.0%
AGCCAAAAAACAGAAAATGA+TGG	+	chr1_4:26236260-26236279	Msa0157920:CDS	30.0%
GTTTAGATCAATGGAATTAC+GGG	+	chr1_4:26236319-26236338	Msa0157920:CDS	30.0%
CCAATAATAGATAGAAGAGA+GGG	-	chr1_4:26236403-26236422	None:intergenic	30.0%
TCCAATAATAGATAGAAGAG+AGG	-	chr1_4:26236404-26236423	None:intergenic	30.0%
ATCATCAACTATCGTATTTG+AGG	-	chr1_4:26236595-26236614	None:intergenic	30.0%
ACATATTTGTAGTCTGAGAA+AGG	+	chr1_4:26236656-26236675	Msa0157920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	26235531	26238468	26235531	ID=Msa0157920;Name=Msa0157920
chr1_4	mRNA	26235531	26238468	26235531	ID=Msa0157920-mRNA-1;Parent=Msa0157920;Name=Msa0157920-mRNA-1;_AED=0.30;_eAED=0.32;_QI=0\|0\|0\|0.9\|1\|1\|10\|0\|372
chr1_4	exon	26235531	26235562	26235531	ID=Msa0157920-mRNA-1:exon:8745;Parent=Msa0157920-mRNA-1
chr1_4	exon	26235654	26235726	26235654	ID=Msa0157920-mRNA-1:exon:8746;Parent=Msa0157920-mRNA-1
chr1_4	exon	26235948	26236047	26235948	ID=Msa0157920-mRNA-1:exon:8747;Parent=Msa0157920-mRNA-1
chr1_4	exon	26236157	26236451	26236157	ID=Msa0157920-mRNA-1:exon:8748;Parent=Msa0157920-mRNA-1
chr1_4	exon	26237141	26237276	26237141	ID=Msa0157920-mRNA-1:exon:8749;Parent=Msa0157920-mRNA-1
chr1_4	exon	26237361	26237459	26237361	ID=Msa0157920-mRNA-1:exon:8750;Parent=Msa0157920-mRNA-1
chr1_4	exon	26237533	26237643	26237533	ID=Msa0157920-mRNA-1:exon:8751;Parent=Msa0157920-mRNA-1
chr1_4	exon	26237836	26237895	26237836	ID=Msa0157920-mRNA-1:exon:8752;Parent=Msa0157920-mRNA-1
chr1_4	exon	26237978	26238093	26237978	ID=Msa0157920-mRNA-1:exon:8753;Parent=Msa0157920-mRNA-1
chr1_4	exon	26238372	26238468	26238372	ID=Msa0157920-mRNA-1:exon:8754;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26235531	26235562	26235531	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26235654	26235726	26235654	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26235948	26236047	26235948	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26236157	26236451	26236157	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26237141	26237276	26237141	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26237361	26237459	26237361	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26237533	26237643	26237533	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26237836	26237895	26237836	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26237978	26238093	26237978	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1
chr1_4	CDS	26238372	26238468	26238372	ID=Msa0157920-mRNA-1:cds;Parent=Msa0157920-mRNA-1

Gene Sequence

>Msa0157920

ATGGTATACAATCGTAATTGGATAAGAGAAATTTTTGAAATCATTCAGAATGAGAAATTTGCACCTATGCTGGAAATATTGCTACTTACCGATGCTGCTTCAAAGTATGGCGTACCAGAAGCAGGACCATCTCAGCCTTCTATTGCTCATGGCCTGCTTTGTTTGCCCGACGATGGTTCATCATTTCCTCCACTTACTAATATAGACCTCAGTGAATATCAACCTCAGAAGTTAGATTTTCAGAGGAATTCCACTATAAGACATGTTAATGATGTCCCTTCTAGTAAATCTGAATCCATACCACGACCAGCCAAAAAACAGAAAATGATGGATTCAGGTTTTGGTGTATCTTCGACTAACTATCAAAGTTTAGATCAATGGAATTACGGGATGGTTCAACCATATTATTTTCAAACACTTCTGGAAGTGCAGAAACAGTCAGAATTTTCCCTCTCTTCTATCTATTATTGGAACAATATGGAGAAATTTCCCCTCTCGGTAAAAGACGAAGAATTTAATGCACAGGGTTGCATTTGCTCAGTGTGTTATAAGACTTCAAAAATCACATTCAATGGAACACCTATTTCTACGAAGAATCTTGAAAAAAGGAATAACATTGAAATACTTGAAGAACCGTGGGTTGAATGTGATAAATGCAAAAGATGGCAGCATCAAATTTGTGCAATCTACAACATCAAAAGAGATTTGGATTGCCATGCTGAGTATATATGTCCTGACTTGTCGATAACTGTGCTAAGTGACCACTTAGAGAAAAGACATTTTGAGAGTCTCATGCAAGAGAGAGAAAACTGGGAAAAAGTTGAAGCGAATGAGAATCTTGACGAGGTTTTTGCATCAGAAAGTCTTTCTATTAGAGAAGTGGTATCTGTCGGCAAGAAACTGAAAATGTTGAAACTGCTGAACGTTTTGAAGCATGCATCCCAATGCCGCGCAGCTAATTCTGAACCATGCTCTCATCCAAACTGTTCTCAAATCAAGAAGTTGTTCTTTCATGCCAGTAATGATCTGAAGAAGCATGTAGAACAAAGATCAATGCATTCCGAGTCTTGCCGTAGAACTGAAATTATGGAAAGCGATGGAGCAGTCGTTGGCAAATAA

Protein sequence

>Msa0157920

MVYNRNWIREIFEIIQNEKFAPMLEILLLTDAASKYGVPEAGPSQPSIAHGLLCLPDDGSSFPPLTNIDLSEYQPQKLDFQRNSTIRHVNDVPSSKSESIPRPAKKQKMMDSGFGVSSTNYQSLDQWNYGMVQPYYFQTLLEVQKQSEFSLSSIYYWNNMEKFPLSVKDEEFNAQGCICSVCYKTSKITFNGTPISTKNLEKRNNIEILEEPWVECDKCKRWQHQICAIYNIKRDLDCHAEYICPDLSITVLSDHLEKRHFESLMQERENWEKVEANENLDEVFASESLSIREVVSVGKKLKMLKLLNVLKHASQCRAANSEPCSHPNCSQIKKLFFHASNDLKKHVEQRSMHSESCRRTEIMESDGAVVGK*