Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0158450 | sp|Q9M1K1|ORG2_ARATH | 41.036 | 251 | 133 | 6 | 1 | 240 | 1 | 247 | 2.67e-53 | 175 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0158450 | A0A072VIS7 | 89.069 | 247 | 27 | 0 | 1 | 247 | 1 | 247 | 4.80e-158 | 447 |
Gene ID | Type | Classification |
---|---|---|
Msa0158450 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0158450 | MtrunA17_Chr1g0170581 | 88.664 | 247 | 28 | 0 | 1 | 247 | 1 | 247 | 2.62e-161 | 446 |
Msa0158450 | MtrunA17_Chr1g0170591 | 86.066 | 244 | 26 | 1 | 1 | 244 | 1 | 236 | 9.39e-153 | 424 |
Msa0158450 | MtrunA17_Chr1g0170571 | 86.066 | 244 | 26 | 1 | 1 | 244 | 1 | 236 | 7.60e-145 | 404 |
Msa0158450 | MtrunA17_Chr7g0256671 | 57.371 | 251 | 88 | 6 | 1 | 241 | 1 | 242 | 9.27e-65 | 202 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0158450 | AT3G56970.1 | 41.036 | 251 | 133 | 6 | 1 | 240 | 1 | 247 | 2.71e-54 | 175 |
Msa0158450 | AT3G56980.1 | 40.076 | 262 | 129 | 6 | 1 | 242 | 1 | 254 | 2.15e-44 | 150 |
Msa0158450 | AT2G41240.1 | 37.603 | 242 | 147 | 2 | 1 | 242 | 1 | 238 | 3.56e-44 | 149 |
Msa0158450 | AT2G41240.2 | 37.190 | 242 | 147 | 3 | 1 | 242 | 1 | 237 | 1.08e-41 | 142 |
Msa0158450 | AT5G04150.2 | 44.654 | 159 | 86 | 1 | 61 | 219 | 82 | 238 | 2.48e-35 | 126 |
Msa0158450 | AT5G04150.1 | 42.541 | 181 | 99 | 3 | 61 | 239 | 82 | 259 | 4.06e-35 | 126 |
Find 38 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCACATGTTTCTGTATTTC+TGG | 0.048296 | 1_4:+27732778 | None:intergenic |
TGATGATGGTTATGGCTTAT+TGG | 0.233335 | 1_4:+27733199 | None:intergenic |
CGAGAAGTTGTTATCAATAA+TGG | 0.272808 | 1_4:-27732333 | Msa0158450:CDS |
GTTTCTTCATCTCAAACCTT+TGG | 0.309294 | 1_4:-27732517 | Msa0158450:CDS |
AGTACTCTTGAAATTGTTGC+TGG | 0.363324 | 1_4:+27732811 | None:intergenic |
TCAATAGTGTCTTTGTAGAA+TGG | 0.399191 | 1_4:+27733172 | None:intergenic |
ATGGCTTATTGGCTCTTCAA+AGG | 0.435523 | 1_4:+27733210 | None:intergenic |
TCTTCCTGTTTCAGATCAAA+TGG | 0.439923 | 1_4:-27732984 | Msa0158450:intron |
ATGGATTCTGATGATGGTTA+TGG | 0.442376 | 1_4:+27733191 | None:intergenic |
TTGTTATGTTTCGAAAATGA+TGG | 0.448403 | 1_4:-27732556 | Msa0158450:CDS |
AGTACCATTTGATCTGAAAC+AGG | 0.450182 | 1_4:+27732980 | None:intergenic |
TCTTCATCTCAAACCTTTGG+AGG | 0.450222 | 1_4:-27732514 | Msa0158450:CDS |
TCGAAACATAACAAAATCTC+AGG | 0.458685 | 1_4:+27732565 | None:intergenic |
GTTGTTATCAATAATGGAAA+AGG | 0.460271 | 1_4:-27732327 | Msa0158450:CDS |
ATCTCAAACCTTTGGAGGGA+GGG | 0.471487 | 1_4:-27732509 | Msa0158450:CDS |
AAGAAACATTTAGCAACAAA+AGG | 0.474589 | 1_4:+27732533 | None:intergenic |
TGGCTTATTGGCTCTTCAAA+GGG | 0.488560 | 1_4:+27733211 | None:intergenic |
TGTAGAATGGATTCTGATGA+TGG | 0.499558 | 1_4:+27733185 | None:intergenic |
ATAATAACTTCATTTACTTG+TGG | 0.512712 | 1_4:+27732712 | None:intergenic |
CATAACAAAATCTCAGGTAG+TGG | 0.513867 | 1_4:+27732571 | None:intergenic |
ACAAATTATTCATCTTCTTG+CGG | 0.523820 | 1_4:+27733026 | None:intergenic |
CTTCATCTCAAACCTTTGGA+GGG | 0.524238 | 1_4:-27732513 | Msa0158450:CDS |
CATGCAAAGGTCACTGCTTG+TGG | 0.541878 | 1_4:+27733087 | None:intergenic |
AAGAAACATAGTTACAACTC+TGG | 0.547575 | 1_4:-27732670 | Msa0158450:CDS |
CATCTCAAACCTTTGGAGGG+AGG | 0.551061 | 1_4:-27732510 | Msa0158450:CDS |
AGTGTAACATGAAATCTGAA+TGG | 0.555088 | 1_4:+27732606 | None:intergenic |
CATCCAATTGTTGAAAACAT+AGG | 0.558093 | 1_4:+27733235 | None:intergenic |
AGGAAGAAGTGAACGAAGAG+AGG | 0.567551 | 1_4:+27733000 | None:intergenic |
GTAGAAGACCCTCCCTCCAA+AGG | 0.574235 | 1_4:+27732501 | None:intergenic |
CCAATTGTTGAAAACATAGG+AGG | 0.582074 | 1_4:+27733238 | None:intergenic |
TCTCAGGTAGTGGAATCTTG+TGG | 0.593592 | 1_4:+27732581 | None:intergenic |
CACAAGCAGTGACCTTTGCA+TGG | 0.598738 | 1_4:-27733086 | Msa0158450:CDS |
TTATCAATAATGGAAAAGGA+AGG | 0.604075 | 1_4:-27732323 | Msa0158450:CDS |
GTCACTGCTTGTGGATTGTG+AGG | 0.612584 | 1_4:+27733096 | None:intergenic |
GAAATACAGAAACATGTGGA+AGG | 0.627895 | 1_4:-27732775 | Msa0158450:CDS |
ACCAGAAATACAGAAACATG+TGG | 0.649518 | 1_4:-27732779 | Msa0158450:CDS |
CAAGCTTCTTGACCATGCAA+AGG | 0.654337 | 1_4:+27733074 | None:intergenic |
TCACTGCTTGTGGATTGTGA+GGG | 0.698792 | 1_4:+27733097 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATTTTCTTAGAACTA+TGG | - | chr1_4:27732672-27732691 | Msa0158450:CDS | 15.0% |
!!! | TTTTAATTTTCTTAGAACTA+TGG | - | chr1_4:27732672-27732691 | Msa0158450:CDS | 15.0% |
!! | ATAATAACTTCATTTACTTG+TGG | + | chr1_4:27732848-27732867 | None:intergenic | 20.0% |
!! | AATGTGTAAATAGTAAATTC+AGG | - | chr1_4:27733125-27733144 | Msa0158450:CDS | 20.0% |
!! | ATAATAACTTCATTTACTTG+TGG | + | chr1_4:27732848-27732867 | None:intergenic | 20.0% |
!! | AATGTGTAAATAGTAAATTC+AGG | - | chr1_4:27733125-27733144 | Msa0158450:CDS | 20.0% |
! | ACAAATTATTCATCTTCTTG+CGG | + | chr1_4:27732534-27732553 | None:intergenic | 25.0% |
! | TTGTTATGTTTCGAAAATGA+TGG | - | chr1_4:27733001-27733020 | Msa0158450:CDS | 25.0% |
! | AAGAAACATTTAGCAACAAA+AGG | + | chr1_4:27733027-27733046 | None:intergenic | 25.0% |
!! | ATTTAACTAAAAGCTCCTTT+TGG | - | chr1_4:27733152-27733171 | Msa0158450:CDS | 25.0% |
!! | TTTAACTAAAAGCTCCTTTT+GGG | - | chr1_4:27733153-27733172 | Msa0158450:CDS | 25.0% |
! | CAACTTCTCGTTTAAAAAAT+CGG | + | chr1_4:27733214-27733233 | None:intergenic | 25.0% |
!! | GTTGTTATCAATAATGGAAA+AGG | - | chr1_4:27733230-27733249 | Msa0158450:CDS | 25.0% |
!! | TTATCAATAATGGAAAAGGA+AGG | - | chr1_4:27733234-27733253 | Msa0158450:CDS | 25.0% |
! | ACAAATTATTCATCTTCTTG+CGG | + | chr1_4:27732534-27732553 | None:intergenic | 25.0% |
! | TTGTTATGTTTCGAAAATGA+TGG | - | chr1_4:27733001-27733020 | Msa0158450:CDS | 25.0% |
! | AAGAAACATTTAGCAACAAA+AGG | + | chr1_4:27733027-27733046 | None:intergenic | 25.0% |
!! | ATTTAACTAAAAGCTCCTTT+TGG | - | chr1_4:27733152-27733171 | Msa0158450:CDS | 25.0% |
!! | TTTAACTAAAAGCTCCTTTT+GGG | - | chr1_4:27733153-27733172 | Msa0158450:CDS | 25.0% |
! | CAACTTCTCGTTTAAAAAAT+CGG | + | chr1_4:27733214-27733233 | None:intergenic | 25.0% |
!! | GTTGTTATCAATAATGGAAA+AGG | - | chr1_4:27733230-27733249 | Msa0158450:CDS | 25.0% |
!! | TTATCAATAATGGAAAAGGA+AGG | - | chr1_4:27733234-27733253 | Msa0158450:CDS | 25.0% |
CATCCAATTGTTGAAAACAT+AGG | + | chr1_4:27732325-27732344 | None:intergenic | 30.0% | |
! | CTATGTTTTCAACAATTGGA+TGG | - | chr1_4:27732323-27732342 | Msa0158450:CDS | 30.0% |
TCAATAGTGTCTTTGTAGAA+TGG | + | chr1_4:27732388-27732407 | None:intergenic | 30.0% | |
!! | TCATTTTGATGATCAAGTAG+AGG | - | chr1_4:27732417-27732436 | Msa0158450:intron | 30.0% |
AAGAAACATAGTTACAACTC+TGG | - | chr1_4:27732887-27732906 | Msa0158450:intron | 30.0% | |
! | GTTTTGTAGTTTCAACAAGT+AGG | - | chr1_4:27732909-27732928 | Msa0158450:intron | 30.0% |
AGTGTAACATGAAATCTGAA+TGG | + | chr1_4:27732954-27732973 | None:intergenic | 30.0% | |
TCGAAACATAACAAAATCTC+AGG | + | chr1_4:27732995-27733014 | None:intergenic | 30.0% | |
! | CTTCTACAATTTGCATTTTC+AGG | - | chr1_4:27733072-27733091 | Msa0158450:CDS | 30.0% |
CGAGAAGTTGTTATCAATAA+TGG | - | chr1_4:27733224-27733243 | Msa0158450:CDS | 30.0% | |
CATCCAATTGTTGAAAACAT+AGG | + | chr1_4:27732325-27732344 | None:intergenic | 30.0% | |
! | CTATGTTTTCAACAATTGGA+TGG | - | chr1_4:27732323-27732342 | Msa0158450:CDS | 30.0% |
TCAATAGTGTCTTTGTAGAA+TGG | + | chr1_4:27732388-27732407 | None:intergenic | 30.0% | |
!! | TCATTTTGATGATCAAGTAG+AGG | - | chr1_4:27732417-27732436 | Msa0158450:intron | 30.0% |
AAGAAACATAGTTACAACTC+TGG | - | chr1_4:27732887-27732906 | Msa0158450:intron | 30.0% | |
! | GTTTTGTAGTTTCAACAAGT+AGG | - | chr1_4:27732909-27732928 | Msa0158450:intron | 30.0% |
AGTGTAACATGAAATCTGAA+TGG | + | chr1_4:27732954-27732973 | None:intergenic | 30.0% | |
TCGAAACATAACAAAATCTC+AGG | + | chr1_4:27732995-27733014 | None:intergenic | 30.0% | |
! | CTTCTACAATTTGCATTTTC+AGG | - | chr1_4:27733072-27733091 | Msa0158450:CDS | 30.0% |
CGAGAAGTTGTTATCAATAA+TGG | - | chr1_4:27733224-27733243 | Msa0158450:CDS | 30.0% | |
CCAATTGTTGAAAACATAGG+AGG | + | chr1_4:27732322-27732341 | None:intergenic | 35.0% | |
! | CCTCCTATGTTTTCAACAAT+TGG | - | chr1_4:27732319-27732338 | Msa0158450:CDS | 35.0% |
!! | TGATGATGGTTATGGCTTAT+TGG | + | chr1_4:27732361-27732380 | None:intergenic | 35.0% |
!! | ATGGATTCTGATGATGGTTA+TGG | + | chr1_4:27732369-27732388 | None:intergenic | 35.0% |
! | TGTAGAATGGATTCTGATGA+TGG | + | chr1_4:27732375-27732394 | None:intergenic | 35.0% |
TCTTCCTGTTTCAGATCAAA+TGG | - | chr1_4:27732573-27732592 | Msa0158450:CDS | 35.0% | |
! | AGTACCATTTGATCTGAAAC+AGG | + | chr1_4:27732580-27732599 | None:intergenic | 35.0% |
AGTACTCTTGAAATTGTTGC+TGG | + | chr1_4:27732749-27732768 | None:intergenic | 35.0% | |
ACCAGAAATACAGAAACATG+TGG | - | chr1_4:27732778-27732797 | Msa0158450:CDS | 35.0% | |
! | TCCACATGTTTCTGTATTTC+TGG | + | chr1_4:27732782-27732801 | None:intergenic | 35.0% |
GAAATACAGAAACATGTGGA+AGG | - | chr1_4:27732782-27732801 | Msa0158450:CDS | 35.0% | |
CATAACAAAATCTCAGGTAG+TGG | + | chr1_4:27732989-27733008 | None:intergenic | 35.0% | |
GTTTCTTCATCTCAAACCTT+TGG | - | chr1_4:27733040-27733059 | Msa0158450:CDS | 35.0% | |
CCAATTGTTGAAAACATAGG+AGG | + | chr1_4:27732322-27732341 | None:intergenic | 35.0% | |
! | CCTCCTATGTTTTCAACAAT+TGG | - | chr1_4:27732319-27732338 | Msa0158450:CDS | 35.0% |
!! | TGATGATGGTTATGGCTTAT+TGG | + | chr1_4:27732361-27732380 | None:intergenic | 35.0% |
!! | ATGGATTCTGATGATGGTTA+TGG | + | chr1_4:27732369-27732388 | None:intergenic | 35.0% |
! | TGTAGAATGGATTCTGATGA+TGG | + | chr1_4:27732375-27732394 | None:intergenic | 35.0% |
TCTTCCTGTTTCAGATCAAA+TGG | - | chr1_4:27732573-27732592 | Msa0158450:CDS | 35.0% | |
! | AGTACCATTTGATCTGAAAC+AGG | + | chr1_4:27732580-27732599 | None:intergenic | 35.0% |
AGTACTCTTGAAATTGTTGC+TGG | + | chr1_4:27732749-27732768 | None:intergenic | 35.0% | |
ACCAGAAATACAGAAACATG+TGG | - | chr1_4:27732778-27732797 | Msa0158450:CDS | 35.0% | |
! | TCCACATGTTTCTGTATTTC+TGG | + | chr1_4:27732782-27732801 | None:intergenic | 35.0% |
GAAATACAGAAACATGTGGA+AGG | - | chr1_4:27732782-27732801 | Msa0158450:CDS | 35.0% | |
CATAACAAAATCTCAGGTAG+TGG | + | chr1_4:27732989-27733008 | None:intergenic | 35.0% | |
GTTTCTTCATCTCAAACCTT+TGG | - | chr1_4:27733040-27733059 | Msa0158450:CDS | 35.0% | |
!! | TGGCTTATTGGCTCTTCAAA+GGG | + | chr1_4:27732349-27732368 | None:intergenic | 40.0% |
!! | ATGGCTTATTGGCTCTTCAA+AGG | + | chr1_4:27732350-27732369 | None:intergenic | 40.0% |
TCTTCATCTCAAACCTTTGG+AGG | - | chr1_4:27733043-27733062 | Msa0158450:CDS | 40.0% | |
CTTCATCTCAAACCTTTGGA+GGG | - | chr1_4:27733044-27733063 | Msa0158450:CDS | 40.0% | |
!! | TGGCTTATTGGCTCTTCAAA+GGG | + | chr1_4:27732349-27732368 | None:intergenic | 40.0% |
!! | ATGGCTTATTGGCTCTTCAA+AGG | + | chr1_4:27732350-27732369 | None:intergenic | 40.0% |
TCTTCATCTCAAACCTTTGG+AGG | - | chr1_4:27733043-27733062 | Msa0158450:CDS | 40.0% | |
CTTCATCTCAAACCTTTGGA+GGG | - | chr1_4:27733044-27733063 | Msa0158450:CDS | 40.0% | |
! | TCACTGCTTGTGGATTGTGA+GGG | + | chr1_4:27732463-27732482 | None:intergenic | 45.0% |
CAAGCTTCTTGACCATGCAA+AGG | + | chr1_4:27732486-27732505 | None:intergenic | 45.0% | |
AGGAAGAAGTGAACGAAGAG+AGG | + | chr1_4:27732560-27732579 | None:intergenic | 45.0% | |
!! | TCTCAGGTAGTGGAATCTTG+TGG | + | chr1_4:27732979-27732998 | None:intergenic | 45.0% |
! | ATCTCAAACCTTTGGAGGGA+GGG | - | chr1_4:27733048-27733067 | Msa0158450:CDS | 45.0% |
! | TCACTGCTTGTGGATTGTGA+GGG | + | chr1_4:27732463-27732482 | None:intergenic | 45.0% |
CAAGCTTCTTGACCATGCAA+AGG | + | chr1_4:27732486-27732505 | None:intergenic | 45.0% | |
AGGAAGAAGTGAACGAAGAG+AGG | + | chr1_4:27732560-27732579 | None:intergenic | 45.0% | |
!! | TCTCAGGTAGTGGAATCTTG+TGG | + | chr1_4:27732979-27732998 | None:intergenic | 45.0% |
! | ATCTCAAACCTTTGGAGGGA+GGG | - | chr1_4:27733048-27733067 | Msa0158450:CDS | 45.0% |
! | GTCACTGCTTGTGGATTGTG+AGG | + | chr1_4:27732464-27732483 | None:intergenic | 50.0% |
CATGCAAAGGTCACTGCTTG+TGG | + | chr1_4:27732473-27732492 | None:intergenic | 50.0% | |
CACAAGCAGTGACCTTTGCA+TGG | - | chr1_4:27732471-27732490 | Msa0158450:intron | 50.0% | |
! | CATCTCAAACCTTTGGAGGG+AGG | - | chr1_4:27733047-27733066 | Msa0158450:CDS | 50.0% |
!!! | GCTCCTTTTGGGTTTTCTGC+AGG | - | chr1_4:27733164-27733183 | Msa0158450:CDS | 50.0% |
CCACCTGCAGAAAACCCAAA+AGG | + | chr1_4:27733170-27733189 | None:intergenic | 50.0% | |
!!! | CCTTTTGGGTTTTCTGCAGG+TGG | - | chr1_4:27733167-27733186 | Msa0158450:CDS | 50.0% |
! | GTCACTGCTTGTGGATTGTG+AGG | + | chr1_4:27732464-27732483 | None:intergenic | 50.0% |
CATGCAAAGGTCACTGCTTG+TGG | + | chr1_4:27732473-27732492 | None:intergenic | 50.0% | |
CACAAGCAGTGACCTTTGCA+TGG | - | chr1_4:27732471-27732490 | Msa0158450:intron | 50.0% | |
! | CATCTCAAACCTTTGGAGGG+AGG | - | chr1_4:27733047-27733066 | Msa0158450:CDS | 50.0% |
!!! | GCTCCTTTTGGGTTTTCTGC+AGG | - | chr1_4:27733164-27733183 | Msa0158450:CDS | 50.0% |
CCACCTGCAGAAAACCCAAA+AGG | + | chr1_4:27733170-27733189 | None:intergenic | 50.0% | |
!!! | CCTTTTGGGTTTTCTGCAGG+TGG | - | chr1_4:27733167-27733186 | Msa0158450:CDS | 50.0% |
GTAGAAGACCCTCCCTCCAA+AGG | + | chr1_4:27733059-27733078 | None:intergenic | 55.0% | |
GTAGAAGACCCTCCCTCCAA+AGG | + | chr1_4:27733059-27733078 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 27732304 | 27733275 | 27732304 | ID=Msa0158450;Name=Msa0158450 |
chr1_4 | mRNA | 27732304 | 27733275 | 27732304 | ID=Msa0158450-mRNA-1;Parent=Msa0158450;Name=Msa0158450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|247 |
chr1_4 | exon | 27732985 | 27733275 | 27732985 | ID=Msa0158450-mRNA-1:exon:9028;Parent=Msa0158450-mRNA-1 |
chr1_4 | exon | 27732486 | 27732848 | 27732486 | ID=Msa0158450-mRNA-1:exon:9027;Parent=Msa0158450-mRNA-1 |
chr1_4 | exon | 27732304 | 27732393 | 27732304 | ID=Msa0158450-mRNA-1:exon:9026;Parent=Msa0158450-mRNA-1 |
chr1_4 | CDS | 27732985 | 27733275 | 27732985 | ID=Msa0158450-mRNA-1:cds;Parent=Msa0158450-mRNA-1 |
chr1_4 | CDS | 27732486 | 27732848 | 27732486 | ID=Msa0158450-mRNA-1:cds;Parent=Msa0158450-mRNA-1 |
chr1_4 | CDS | 27732304 | 27732393 | 27732304 | ID=Msa0158450-mRNA-1:cds;Parent=Msa0158450-mRNA-1 |
Gene Sequence |
Protein sequence |