Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158530 | RHN78877.1 | 88.384 | 198 | 19 | 1 | 1 | 194 | 1 | 198 | 2.59e-108 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158530 | sp|Q9ZWS9|ARR3_ARATH | 59.406 | 202 | 59 | 5 | 4 | 186 | 29 | 226 | 3.14e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158530 | A0A396JVZ4 | 88.384 | 198 | 19 | 1 | 1 | 194 | 1 | 198 | 1.24e-108 | 318 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0158530 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158530 | MtrunA17_Chr1g0170741 | 88.384 | 198 | 19 | 1 | 1 | 194 | 1 | 198 | 2.38e-112 | 318 |
| Msa0158530 | MtrunA17_Chr5g0414931 | 66.245 | 237 | 37 | 4 | 1 | 194 | 1 | 237 | 7.86e-90 | 263 |
| Msa0158530 | MtrunA17_Chr4g0059571 | 61.538 | 169 | 62 | 1 | 3 | 171 | 21 | 186 | 1.01e-63 | 196 |
| Msa0158530 | MtrunA17_Chr3g0118211 | 61.006 | 159 | 56 | 2 | 7 | 162 | 22 | 177 | 1.60e-60 | 187 |
| Msa0158530 | MtrunA17_Chr7g0256551 | 62.044 | 137 | 46 | 1 | 7 | 137 | 8 | 144 | 1.94e-54 | 173 |
| Msa0158530 | MtrunA17_Chr3g0082861 | 56.129 | 155 | 59 | 2 | 7 | 152 | 3 | 157 | 2.19e-52 | 165 |
| Msa0158530 | MtrunA17_Chr8g0352871 | 61.029 | 136 | 48 | 2 | 7 | 137 | 8 | 143 | 1.05e-50 | 161 |
| Msa0158530 | MtrunA17_Chr3g0128691 | 59.559 | 136 | 48 | 3 | 4 | 136 | 14 | 145 | 1.72e-49 | 157 |
| Msa0158530 | MtrunA17_Chr3g0124861 | 51.020 | 147 | 56 | 3 | 6 | 137 | 20 | 165 | 9.85e-43 | 143 |
| Msa0158530 | MtrunA17_Chr4g0021731 | 59.756 | 82 | 30 | 2 | 7 | 88 | 10 | 88 | 4.17e-25 | 93.6 |
| Msa0158530 | MtrunA17_Chr3g0127941 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 1.04e-16 | 77.4 |
| Msa0158530 | MtrunA17_Chr7g0276361 | 31.757 | 148 | 87 | 3 | 14 | 161 | 22 | 155 | 8.53e-16 | 74.7 |
| Msa0158530 | MtrunA17_Chr4g0030271 | 36.220 | 127 | 69 | 2 | 8 | 134 | 89 | 203 | 5.33e-15 | 72.8 |
| Msa0158530 | MtrunA17_Chr8g0345901 | 30.882 | 136 | 82 | 1 | 8 | 143 | 36 | 159 | 6.62e-14 | 69.3 |
| Msa0158530 | MtrunA17_Chr1g0181811 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 3.18e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158530 | AT1G59940.1 | 59.406 | 202 | 59 | 5 | 4 | 186 | 29 | 226 | 3.19e-71 | 216 |
| Msa0158530 | AT1G10470.3 | 55.752 | 226 | 55 | 6 | 6 | 190 | 18 | 239 | 6.96e-70 | 213 |
| Msa0158530 | AT1G59940.2 | 59.406 | 202 | 59 | 5 | 4 | 186 | 121 | 318 | 1.24e-69 | 215 |
| Msa0158530 | AT1G10470.1 | 55.752 | 226 | 55 | 6 | 6 | 190 | 32 | 253 | 2.00e-69 | 212 |
| Msa0158530 | AT3G48100.1 | 65.563 | 151 | 50 | 1 | 8 | 158 | 25 | 173 | 2.25e-63 | 194 |
| Msa0158530 | AT5G62920.1 | 72.656 | 128 | 32 | 1 | 8 | 135 | 25 | 149 | 2.65e-61 | 189 |
| Msa0158530 | AT1G74890.1 | 71.318 | 129 | 34 | 1 | 7 | 135 | 17 | 142 | 3.61e-59 | 184 |
| Msa0158530 | AT1G19050.1 | 68.217 | 129 | 38 | 1 | 7 | 135 | 23 | 148 | 2.65e-58 | 182 |
| Msa0158530 | AT2G40670.1 | 59.701 | 134 | 54 | 0 | 4 | 137 | 25 | 158 | 1.95e-54 | 171 |
| Msa0158530 | AT3G56380.1 | 61.654 | 133 | 47 | 2 | 6 | 137 | 18 | 147 | 4.68e-53 | 167 |
| Msa0158530 | AT2G40670.2 | 59.259 | 135 | 54 | 1 | 4 | 137 | 25 | 159 | 1.30e-52 | 166 |
| Msa0158530 | AT3G57040.2 | 58.696 | 138 | 50 | 2 | 7 | 137 | 8 | 145 | 1.32e-52 | 168 |
| Msa0158530 | AT3G57040.1 | 58.696 | 138 | 50 | 2 | 7 | 137 | 8 | 145 | 1.32e-52 | 168 |
| Msa0158530 | AT2G41310.1 | 59.155 | 142 | 52 | 2 | 1 | 137 | 3 | 143 | 4.01e-52 | 167 |
| Msa0158530 | AT3G56380.2 | 61.194 | 134 | 47 | 3 | 6 | 137 | 18 | 148 | 3.36e-51 | 162 |
| Msa0158530 | AT1G10470.2 | 42.771 | 166 | 45 | 9 | 70 | 190 | 17 | 177 | 1.63e-23 | 92.4 |
| Msa0158530 | AT2G46790.3 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 3.54e-15 | 73.2 |
| Msa0158530 | AT5G24470.1 | 30.216 | 139 | 83 | 3 | 8 | 146 | 52 | 176 | 3.64e-15 | 73.6 |
| Msa0158530 | AT2G46790.1 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 4.74e-15 | 72.8 |
| Msa0158530 | AT5G60100.7 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.21e-14 | 70.9 |
| Msa0158530 | AT5G60100.6 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.21e-14 | 70.9 |
| Msa0158530 | AT5G60100.4 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 2.21e-14 | 70.9 |
| Msa0158530 | AT5G60100.2 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 4.35e-14 | 70.1 |
| Msa0158530 | AT5G60100.5 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 5.21e-14 | 70.1 |
| Msa0158530 | AT5G60100.3 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 5.21e-14 | 70.1 |
| Msa0158530 | AT5G60100.1 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 5.21e-14 | 70.1 |
| Msa0158530 | AT2G07440.1 | 59.184 | 49 | 20 | 0 | 89 | 137 | 9 | 57 | 1.20e-12 | 62.8 |
| Msa0158530 | AT5G02810.1 | 28.358 | 134 | 84 | 1 | 8 | 141 | 78 | 199 | 1.60e-12 | 65.9 |
Find 39 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGATTACATGCTTCTTC+TGG | 0.290924 | 1_4:+27999672 | None:intergenic |
| ATTGAAAATATTCAGATGTT+TGG | 0.307010 | 1_4:-27999808 | Msa0158530:intron |
| AACTCATAACCAGTCATTTC+TGG | 0.328147 | 1_4:+28000597 | None:intergenic |
| TTTGTTGCCTTAGCCTTTGA+AGG | 0.366124 | 1_4:-28000649 | Msa0158530:intron |
| CTCAAAATTTCTGCTTGTAA+AGG | 0.386939 | 1_4:-28001055 | Msa0158530:intron |
| TTCTGAAGAGGTTCATGTAT+TGG | 0.402386 | 1_4:-28001122 | Msa0158530:CDS |
| TACTGGAATTTCCTTAAAAG+TGG | 0.438337 | 1_4:+28000440 | None:intergenic |
| TTAGTTACTGCTGTGGATAG+TGG | 0.438893 | 1_4:-28000828 | Msa0158530:intron |
| TTCACATCACATAATTTCAC+TGG | 0.453732 | 1_4:+27999756 | None:intergenic |
| TGATGAAGGTGATGATGAAA+TGG | 0.459647 | 1_4:+27999635 | None:intergenic |
| ATAACAGTACCTGTCTATGC+GGG | 0.487586 | 1_4:+28000389 | None:intergenic |
| TCAGAAGACATAATCACTAC+TGG | 0.489512 | 1_4:+28000423 | None:intergenic |
| ATATTCTGCCCCGCATAGAC+AGG | 0.510615 | 1_4:-28000398 | Msa0158530:intron |
| ATATTCAGATGTTTGGAAGA+AGG | 0.511460 | 1_4:-27999801 | Msa0158530:intron |
| TATTGCATGCCAGAAATGAC+TGG | 0.520879 | 1_4:-28000606 | Msa0158530:CDS |
| TTGATCGGAAAGTTATTGAA+AGG | 0.524082 | 1_4:-28001081 | Msa0158530:CDS |
| TGACAACCCAAATAGTCATT+CGG | 0.532453 | 1_4:+27999551 | None:intergenic |
| ATAACAAGATCCACCTTCAA+AGG | 0.539532 | 1_4:+28000636 | None:intergenic |
| GTTGCCTTAGCCTTTGAAGG+TGG | 0.539999 | 1_4:-28000646 | Msa0158530:intron |
| TACACGACAACAAGGGAGGT+TGG | 0.568414 | 1_4:-27999720 | Msa0158530:CDS |
| TGCTTGAGTCTCCAATCAGA+CGG | 0.583623 | 1_4:-27999590 | Msa0158530:CDS |
| CATCACCTTCATCATCTCCA+TGG | 0.584093 | 1_4:-27999626 | Msa0158530:CDS |
| TGAAGGGTTACACGACAACA+AGG | 0.592154 | 1_4:-27999728 | Msa0158530:CDS |
| ATGTTTGGAAGAAGGTGCAA+AGG | 0.598645 | 1_4:-27999793 | Msa0158530:CDS |
| AGAGAGAAGTCTGAATCTGA+TGG | 0.604808 | 1_4:-28000768 | Msa0158530:CDS |
| GATGGAGACAAATTCTGAAG+AGG | 0.610289 | 1_4:-28001134 | Msa0158530:CDS |
| TTGATGATAGTCTCATTGAT+CGG | 0.612021 | 1_4:-28001096 | Msa0158530:CDS |
| AGCACACTAGATGCAGACCA+TGG | 0.620424 | 1_4:+27999609 | None:intergenic |
| ACAACAAGGGAGGTTGGAGT+AGG | 0.621263 | 1_4:-27999714 | Msa0158530:CDS |
| GTGAACTTTAGTTACTGCTG+TGG | 0.629072 | 1_4:-28000835 | Msa0158530:intron |
| GCAGACCATGGAGATGATGA+AGG | 0.631715 | 1_4:+27999621 | None:intergenic |
| ATGTGATGTGAAACGACTGA+AGG | 0.650404 | 1_4:-27999745 | Msa0158530:CDS |
| TATAACAGTACCTGTCTATG+CGG | 0.670864 | 1_4:+28000388 | None:intergenic |
| TGTGATGTGAAACGACTGAA+GGG | 0.672931 | 1_4:-27999744 | Msa0158530:CDS |
| GGTGATGATGAAATGGAAGG+TGG | 0.683783 | 1_4:+27999642 | None:intergenic |
| GAAGGTGATGATGAAATGGA+AGG | 0.689447 | 1_4:+27999639 | None:intergenic |
| TAACAGTACCTGTCTATGCG+GGG | 0.697429 | 1_4:+28000390 | None:intergenic |
| GGGTTACACGACAACAAGGG+AGG | 0.704271 | 1_4:-27999724 | Msa0158530:CDS |
| GAAGGGTTACACGACAACAA+GGG | 0.729875 | 1_4:-27999727 | Msa0158530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAGTAATGATTTTTTCAA+TGG | + | chr1_4:28000166-28000185 | None:intergenic | 15.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | - | chr1_4:28000349-28000368 | Msa0158530:intron | 15.0% |
| !!! | AACAATTTTTGAAAAATAGT+TGG | + | chr1_4:28000811-28000830 | None:intergenic | 15.0% |
| !!! | TATAGTAATGATTTTTTCAA+TGG | + | chr1_4:28000166-28000185 | None:intergenic | 15.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | - | chr1_4:28000349-28000368 | Msa0158530:intron | 15.0% |
| !!! | AACAATTTTTGAAAAATAGT+TGG | + | chr1_4:28000811-28000830 | None:intergenic | 15.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | - | chr1_4:28000476-28000495 | Msa0158530:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | - | chr1_4:28000477-28000496 | Msa0158530:intron | 20.0% |
| !!! | TCATTAAAAAGTATAACCAT+TGG | + | chr1_4:28000545-28000564 | None:intergenic | 20.0% |
| !!! | ATTTAAGTGTCTTTTTTCTT+TGG | + | chr1_4:28000634-28000653 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | - | chr1_4:28000891-28000910 | Msa0158530:intron | 20.0% |
| !!! | TACGAAATAGATGTTTTTAA+AGG | - | chr1_4:28000476-28000495 | Msa0158530:intron | 20.0% |
| !!! | ACGAAATAGATGTTTTTAAA+GGG | - | chr1_4:28000477-28000496 | Msa0158530:intron | 20.0% |
| !!! | TCATTAAAAAGTATAACCAT+TGG | + | chr1_4:28000545-28000564 | None:intergenic | 20.0% |
| !!! | ATTTAAGTGTCTTTTTTCTT+TGG | + | chr1_4:28000634-28000653 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | - | chr1_4:28000891-28000910 | Msa0158530:intron | 20.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | - | chr1_4:28000119-28000138 | Msa0158530:intron | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | - | chr1_4:28000478-28000497 | Msa0158530:intron | 25.0% |
| ! | TTTCAATTGTAACAAACCAA+TGG | - | chr1_4:28000526-28000545 | Msa0158530:intron | 25.0% |
| !! | TTATTGTTATTAGTTACCGT+TGG | - | chr1_4:28000829-28000848 | Msa0158530:intron | 25.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | - | chr1_4:28000119-28000138 | Msa0158530:intron | 25.0% |
| !!! | CGAAATAGATGTTTTTAAAG+GGG | - | chr1_4:28000478-28000497 | Msa0158530:intron | 25.0% |
| ! | TTTCAATTGTAACAAACCAA+TGG | - | chr1_4:28000526-28000545 | Msa0158530:intron | 25.0% |
| !! | TTATTGTTATTAGTTACCGT+TGG | - | chr1_4:28000829-28000848 | Msa0158530:intron | 25.0% |
| ! | TTGATGATAGTCTCATTGAT+CGG | - | chr1_4:27999603-27999622 | Msa0158530:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | - | chr1_4:27999618-27999637 | Msa0158530:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | - | chr1_4:27999644-27999663 | Msa0158530:CDS | 30.0% | |
| TGAAGATATTCTCATTTGTG+AGG | - | chr1_4:27999732-27999751 | Msa0158530:CDS | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | + | chr1_4:28000233-28000252 | None:intergenic | 30.0% | |
| TACTGGAATTTCCTTAAAAG+TGG | + | chr1_4:28000262-28000281 | None:intergenic | 30.0% | |
| AACTTCATCTCAATTTCCAA+CGG | + | chr1_4:28000848-28000867 | None:intergenic | 30.0% | |
| ATATTCAGATGTTTGGAAGA+AGG | - | chr1_4:28000898-28000917 | Msa0158530:intron | 30.0% | |
| TTCACATCACATAATTTCAC+TGG | + | chr1_4:28000946-28000965 | None:intergenic | 30.0% | |
| ! | TTGATGATAGTCTCATTGAT+CGG | - | chr1_4:27999603-27999622 | Msa0158530:CDS | 30.0% |
| TTGATCGGAAAGTTATTGAA+AGG | - | chr1_4:27999618-27999637 | Msa0158530:CDS | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | - | chr1_4:27999644-27999663 | Msa0158530:CDS | 30.0% | |
| TGAAGATATTCTCATTTGTG+AGG | - | chr1_4:27999732-27999751 | Msa0158530:CDS | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | + | chr1_4:28000233-28000252 | None:intergenic | 30.0% | |
| TACTGGAATTTCCTTAAAAG+TGG | + | chr1_4:28000262-28000281 | None:intergenic | 30.0% | |
| AACTTCATCTCAATTTCCAA+CGG | + | chr1_4:28000848-28000867 | None:intergenic | 30.0% | |
| ATATTCAGATGTTTGGAAGA+AGG | - | chr1_4:28000898-28000917 | Msa0158530:intron | 30.0% | |
| TTCACATCACATAATTTCAC+TGG | + | chr1_4:28000946-28000965 | None:intergenic | 30.0% | |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | - | chr1_4:27999577-27999596 | Msa0158530:CDS | 35.0% |
| GTAAAGGTGAGTTTGTGATT+TGG | - | chr1_4:27999660-27999679 | Msa0158530:CDS | 35.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | - | chr1_4:27999894-27999913 | Msa0158530:intron | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | - | chr1_4:27999895-27999914 | Msa0158530:intron | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | - | chr1_4:27999946-27999965 | Msa0158530:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | + | chr1_4:28000066-28000085 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | + | chr1_4:28000105-28000124 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | - | chr1_4:28000230-28000249 | Msa0158530:intron | 35.0% |
| TCAGAAGACATAATCACTAC+TGG | + | chr1_4:28000279-28000298 | None:intergenic | 35.0% | |
| TATAACAGTACCTGTCTATG+CGG | + | chr1_4:28000314-28000333 | None:intergenic | 35.0% | |
| ! | TGATGAAGGTGATGATGAAA+TGG | + | chr1_4:28001067-28001086 | None:intergenic | 35.0% |
| !! | GTCATTTTAAACCGTCTGAT+TGG | + | chr1_4:28001123-28001142 | None:intergenic | 35.0% |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | - | chr1_4:27999577-27999596 | Msa0158530:CDS | 35.0% |
| GTAAAGGTGAGTTTGTGATT+TGG | - | chr1_4:27999660-27999679 | Msa0158530:CDS | 35.0% | |
| !!! | AATCAGAGCACTGCAATTTT+TGG | - | chr1_4:27999894-27999913 | Msa0158530:intron | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | - | chr1_4:27999895-27999914 | Msa0158530:intron | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | - | chr1_4:27999946-27999965 | Msa0158530:intron | 35.0% |
| ATAACAAGATCCACCTTCAA+AGG | + | chr1_4:28000066-28000085 | None:intergenic | 35.0% | |
| AACTCATAACCAGTCATTTC+TGG | + | chr1_4:28000105-28000124 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | - | chr1_4:28000230-28000249 | Msa0158530:intron | 35.0% |
| TCAGAAGACATAATCACTAC+TGG | + | chr1_4:28000279-28000298 | None:intergenic | 35.0% | |
| TATAACAGTACCTGTCTATG+CGG | + | chr1_4:28000314-28000333 | None:intergenic | 35.0% | |
| ! | TGATGAAGGTGATGATGAAA+TGG | + | chr1_4:28001067-28001086 | None:intergenic | 35.0% |
| !! | GTCATTTTAAACCGTCTGAT+TGG | + | chr1_4:28001123-28001142 | None:intergenic | 35.0% |
| GTGAACTTTAGTTACTGCTG+TGG | - | chr1_4:27999864-27999883 | Msa0158530:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | - | chr1_4:27999871-27999890 | Msa0158530:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | - | chr1_4:27999896-27999915 | Msa0158530:intron | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | - | chr1_4:27999931-27999950 | Msa0158530:intron | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | - | chr1_4:28000050-28000069 | Msa0158530:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | - | chr1_4:28000093-28000112 | Msa0158530:intron | 40.0% | |
| ATAACAGTACCTGTCTATGC+GGG | + | chr1_4:28000313-28000332 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | - | chr1_4:28000906-28000925 | Msa0158530:intron | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | - | chr1_4:28000954-28000973 | Msa0158530:intron | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | - | chr1_4:28000955-28000974 | Msa0158530:intron | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | + | chr1_4:28001030-28001049 | None:intergenic | 40.0% | |
| ! | GAAGGTGATGATGAAATGGA+AGG | + | chr1_4:28001063-28001082 | None:intergenic | 40.0% |
| GTGAACTTTAGTTACTGCTG+TGG | - | chr1_4:27999864-27999883 | Msa0158530:intron | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | - | chr1_4:27999871-27999890 | Msa0158530:intron | 40.0% | |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | - | chr1_4:27999896-27999915 | Msa0158530:intron | 40.0% |
| AGAGAGAAGTCTGAATCTGA+TGG | - | chr1_4:27999931-27999950 | Msa0158530:intron | 40.0% | |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | - | chr1_4:28000050-28000069 | Msa0158530:intron | 40.0% |
| TATTGCATGCCAGAAATGAC+TGG | - | chr1_4:28000093-28000112 | Msa0158530:intron | 40.0% | |
| ATAACAGTACCTGTCTATGC+GGG | + | chr1_4:28000313-28000332 | None:intergenic | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | - | chr1_4:28000906-28000925 | Msa0158530:intron | 40.0% |
| ATGTGATGTGAAACGACTGA+AGG | - | chr1_4:28000954-28000973 | Msa0158530:intron | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | - | chr1_4:28000955-28000974 | Msa0158530:intron | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | + | chr1_4:28001030-28001049 | None:intergenic | 40.0% | |
| ! | GAAGGTGATGATGAAATGGA+AGG | + | chr1_4:28001063-28001082 | None:intergenic | 40.0% |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | - | chr1_4:27999900-27999919 | Msa0158530:intron | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | + | chr1_4:28000060-28000079 | None:intergenic | 45.0% | |
| !! | GCAGGAATCGTCCACTTTTA+AGG | - | chr1_4:28000248-28000267 | Msa0158530:intron | 45.0% |
| TAACAGTACCTGTCTATGCG+GGG | + | chr1_4:28000312-28000331 | None:intergenic | 45.0% | |
| TGAAGGGTTACACGACAACA+AGG | - | chr1_4:28000971-28000990 | Msa0158530:intron | 45.0% | |
| GAAGGGTTACACGACAACAA+GGG | - | chr1_4:28000972-28000991 | Msa0158530:intron | 45.0% | |
| ! | GGTGATGATGAAATGGAAGG+TGG | + | chr1_4:28001060-28001079 | None:intergenic | 45.0% |
| CATCACCTTCATCATCTCCA+TGG | - | chr1_4:28001073-28001092 | Msa0158530:CDS | 45.0% | |
| TGCTTGAGTCTCCAATCAGA+CGG | - | chr1_4:28001109-28001128 | Msa0158530:CDS | 45.0% | |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | - | chr1_4:27999900-27999919 | Msa0158530:intron | 45.0% |
| AGATCCACCTTCAAAGGCTA+AGG | + | chr1_4:28000060-28000079 | None:intergenic | 45.0% | |
| !! | GCAGGAATCGTCCACTTTTA+AGG | - | chr1_4:28000248-28000267 | Msa0158530:intron | 45.0% |
| TAACAGTACCTGTCTATGCG+GGG | + | chr1_4:28000312-28000331 | None:intergenic | 45.0% | |
| TGAAGGGTTACACGACAACA+AGG | - | chr1_4:28000971-28000990 | Msa0158530:intron | 45.0% | |
| GAAGGGTTACACGACAACAA+GGG | - | chr1_4:28000972-28000991 | Msa0158530:intron | 45.0% | |
| ! | GGTGATGATGAAATGGAAGG+TGG | + | chr1_4:28001060-28001079 | None:intergenic | 45.0% |
| CATCACCTTCATCATCTCCA+TGG | - | chr1_4:28001073-28001092 | Msa0158530:CDS | 45.0% | |
| TGCTTGAGTCTCCAATCAGA+CGG | - | chr1_4:28001109-28001128 | Msa0158530:CDS | 45.0% | |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | - | chr1_4:28000333-28000352 | Msa0158530:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | - | chr1_4:28000334-28000353 | Msa0158530:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | + | chr1_4:28000668-28000687 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | - | chr1_4:28000333-28000352 | Msa0158530:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | - | chr1_4:28000334-28000353 | Msa0158530:intron | 5.0% |
| !! | TAATTTATACTTATATATAA+TGG | + | chr1_4:28000668-28000687 | None:intergenic | 5.0% |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | - | chr1_4:28000053-28000072 | Msa0158530:intron | 50.0% |
| ATATTCTGCCCCGCATAGAC+AGG | - | chr1_4:28000301-28000320 | Msa0158530:intron | 50.0% | |
| TACACGACAACAAGGGAGGT+TGG | - | chr1_4:28000979-28000998 | Msa0158530:intron | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | - | chr1_4:28000985-28001004 | Msa0158530:intron | 50.0% | |
| GCAGACCATGGAGATGATGA+AGG | + | chr1_4:28001081-28001100 | None:intergenic | 50.0% | |
| AGCACACTAGATGCAGACCA+TGG | + | chr1_4:28001093-28001112 | None:intergenic | 50.0% | |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | - | chr1_4:28000053-28000072 | Msa0158530:intron | 50.0% |
| ATATTCTGCCCCGCATAGAC+AGG | - | chr1_4:28000301-28000320 | Msa0158530:intron | 50.0% | |
| TACACGACAACAAGGGAGGT+TGG | - | chr1_4:28000979-28000998 | Msa0158530:intron | 50.0% | |
| ACAACAAGGGAGGTTGGAGT+AGG | - | chr1_4:28000985-28001004 | Msa0158530:intron | 50.0% | |
| GCAGACCATGGAGATGATGA+AGG | + | chr1_4:28001081-28001100 | None:intergenic | 50.0% | |
| AGCACACTAGATGCAGACCA+TGG | + | chr1_4:28001093-28001112 | None:intergenic | 50.0% | |
| GGGTTACACGACAACAAGGG+AGG | - | chr1_4:28000975-28000994 | Msa0158530:intron | 55.0% | |
| GGGTTACACGACAACAAGGG+AGG | - | chr1_4:28000975-28000994 | Msa0158530:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 27999566 | 28001155 | 27999566 | ID=Msa0158530;Name=Msa0158530 |
| chr1_4 | mRNA | 27999566 | 28001155 | 27999566 | ID=Msa0158530-mRNA-1;Parent=Msa0158530;Name=Msa0158530-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|5|0|194 |
| chr1_4 | exon | 28001056 | 28001155 | 28001056 | ID=Msa0158530-mRNA-1:exon:9081;Parent=Msa0158530-mRNA-1 |
| chr1_4 | exon | 28000761 | 28000846 | 28000761 | ID=Msa0158530-mRNA-1:exon:9080;Parent=Msa0158530-mRNA-1 |
| chr1_4 | exon | 28000581 | 28000658 | 28000581 | ID=Msa0158530-mRNA-1:exon:9079;Parent=Msa0158530-mRNA-1 |
| chr1_4 | exon | 28000399 | 28000469 | 28000399 | ID=Msa0158530-mRNA-1:exon:9078;Parent=Msa0158530-mRNA-1 |
| chr1_4 | exon | 27999566 | 27999815 | 27999566 | ID=Msa0158530-mRNA-1:exon:9077;Parent=Msa0158530-mRNA-1 |
| chr1_4 | CDS | 28001056 | 28001155 | 28001056 | ID=Msa0158530-mRNA-1:cds;Parent=Msa0158530-mRNA-1 |
| chr1_4 | CDS | 28000761 | 28000846 | 28000761 | ID=Msa0158530-mRNA-1:cds;Parent=Msa0158530-mRNA-1 |
| chr1_4 | CDS | 28000581 | 28000658 | 28000581 | ID=Msa0158530-mRNA-1:cds;Parent=Msa0158530-mRNA-1 |
| chr1_4 | CDS | 28000399 | 28000469 | 28000399 | ID=Msa0158530-mRNA-1:cds;Parent=Msa0158530-mRNA-1 |
| chr1_4 | CDS | 27999566 | 27999815 | 27999566 | ID=Msa0158530-mRNA-1:cds;Parent=Msa0158530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
