AlfalfaGEDB | Msa0159130

M. sativa cultivar zhongmu-4 / Msa0159130

KEGG: K14510
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF14381.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159130	XP_024631703.1	92.263	685	11	2	1	652	1	676	0.0	1288

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159130	sp\|Q05609\|CTR1_ARATH	52.148	675	240	11	37	651	161	812	0.0	612

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159130	A0A396JW60	92.263	685	11	2	1	652	1	676	0.0	1288

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159130	MtrunA17_Chr1g0171451	92.263	685	11	2	1	652	1	676	0.0	1288
Msa0159130	MtrunA17_Chr1g0179331	50.501	699	251	9	32	648	128	813	0.0	638
Msa0159130	MtrunA17_Chr5g0427651	39.492	709	308	13	35	648	222	904	1.21e-152	464
Msa0159130	MtrunA17_Chr3g0132791	48.797	291	107	2	391	648	630	911	1.56e-84	285
Msa0159130	MtrunA17_Chr3g0132791	40.065	307	160	6	19	320	179	466	1.68e-56	206
Msa0159130	MtrunA17_Chr8g0392871	45.223	314	121	6	370	647	696	994	2.28e-79	272
Msa0159130	MtrunA17_Chr8g0392871	32.028	281	165	6	40	309	102	367	6.45e-32	132
Msa0159130	MtrunA17_Chr1g0191171	48.239	284	100	4	401	648	676	948	3.19e-79	271
Msa0159130	MtrunA17_Chr1g0191171	35.088	285	148	8	41	307	88	353	1.86e-36	146
Msa0159130	MtrunA17_Chr6g0482711	46.831	284	104	4	406	653	652	924	4.41e-77	265

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0159130	AT5G03730.2	52.148	675	240	11	37	651	161	812	0.0	612
Msa0159130	AT5G03730.1	52.148	675	240	11	37	651	161	812	0.0	612
Msa0159130	AT4G24480.3	48.780	287	105	2	395	648	650	927	1.15e-85	288
Msa0159130	AT4G24480.3	41.176	306	158	4	10	310	217	505	5.71e-59	214
Msa0159130	AT4G24480.2	48.780	287	105	2	395	648	650	927	1.49e-85	288
Msa0159130	AT4G24480.2	41.176	306	158	4	10	310	217	505	7.15e-59	214
Msa0159130	AT4G24480.1	47.945	292	105	3	395	648	650	932	2.80e-83	282
Msa0159130	AT4G24480.1	41.176	306	158	4	10	310	217	505	6.91e-59	214
Msa0159130	AT1G08720.1	48.214	280	101	3	401	647	656	924	4.06e-79	270
Msa0159130	AT1G08720.1	33.882	304	169	8	41	330	76	361	1.50e-35	144

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Find 176 sgRNAs with CRISPR-Local

Find 1037 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTGTGAAAGTGATT+GGG	0.450277	1_4:-29090951	None:intergenic
AAACGGTGTGAAAGTGATTG+GGG	0.595140	1_4:-29090950	None:intergenic
AAACTCTAAATCAGCCTGAA+TGG	0.449450	1_4:+29101302	Msa0159130:intron
AAATCTTGTTTGTAGTAGGA+TGG	0.484748	1_4:+29091823	Msa0159130:CDS
AAATGCGATGTATTCAGCTT+TGG	0.489589	1_4:+29101364	Msa0159130:CDS
AAATTTAGGTGCGCGCTGGA+AGG	0.579154	1_4:+29091956	Msa0159130:CDS
AACGGTGTGAAAGTGATTGG+GGG	0.678641	1_4:-29090949	None:intergenic
AAGTATTGTAGAAAGGACAT+GGG	0.708862	1_4:+29092398	Msa0159130:CDS
AATCTTGTTTGTAGTAGGAT+GGG	0.552756	1_4:+29091824	Msa0159130:CDS
AATGGCCCAATTGTATTTCT+TGG	0.265818	1_4:+29094436	Msa0159130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAGTAGTTAAGTTAAAAG+AGG	+	chr1_4:29090611-29090630	Msa0159130:five_prime_UTR	30.0%
TCAAATAAGTCAATCCATAC+AGG	+	chr1_4:29091218-29091237	Msa0159130:intron	30.0%
AGTTGTTAAGTACAATACGA+CGG	-	chr1_4:29091313-29091332	None:intergenic	30.0%
CAAAGCTAATTTACACTATC+AGG	-	chr1_4:29091395-29091414	None:intergenic	30.0%
GACATTAGTGATTCAAATGA+TGG	-	chr1_4:29091662-29091681	None:intergenic	30.0%
ATGGGTCAAAAATAACGAAT+CGG	-	chr1_4:29092094-29092113	None:intergenic	30.0%
AAATGTTCTGACCAGAAAAT+GGG	-	chr1_4:29092112-29092131	None:intergenic	30.0%
AAAATGTTCTGACCAGAAAA+TGG	-	chr1_4:29092113-29092132	None:intergenic	30.0%
ATAAAACTGGCCACATTATA+CGG	+	chr1_4:29092641-29092660	Msa0159130:intron	30.0%
CTATGAGTTAGTAACAATAC+AGG	-	chr1_4:29093365-29093384	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	29090570	29104820	29090570	ID=Msa0159130;Name=Msa0159130
chr1_4	mRNA	29090570	29104820	29090570	ID=Msa0159130-mRNA-1;Parent=Msa0159130;Name=Msa0159130-mRNA-1;_AED=0.23;_eAED=0.23;_QI=122\|0.86\|0.93\|1\|0.93\|0.93\|16\|345\|653
chr1_4	exon	29090570	29090976	29090570	ID=Msa0159130-mRNA-1:exon:9414;Parent=Msa0159130-mRNA-1
chr1_4	exon	29091545	29091846	29091545	ID=Msa0159130-mRNA-1:exon:9415;Parent=Msa0159130-mRNA-1
chr1_4	exon	29091935	29092076	29091935	ID=Msa0159130-mRNA-1:exon:9416;Parent=Msa0159130-mRNA-1
chr1_4	exon	29092350	29092453	29092350	ID=Msa0159130-mRNA-1:exon:9417;Parent=Msa0159130-mRNA-1
chr1_4	exon	29094292	29094497	29094292	ID=Msa0159130-mRNA-1:exon:9418;Parent=Msa0159130-mRNA-1
chr1_4	exon	29096511	29096597	29096511	ID=Msa0159130-mRNA-1:exon:9419;Parent=Msa0159130-mRNA-1
chr1_4	exon	29096782	29096922	29096782	ID=Msa0159130-mRNA-1:exon:9420;Parent=Msa0159130-mRNA-1
chr1_4	exon	29097051	29097091	29097051	ID=Msa0159130-mRNA-1:exon:9421;Parent=Msa0159130-mRNA-1
chr1_4	exon	29099125	29099193	29099125	ID=Msa0159130-mRNA-1:exon:9422;Parent=Msa0159130-mRNA-1
chr1_4	exon	29099344	29099444	29099344	ID=Msa0159130-mRNA-1:exon:9423;Parent=Msa0159130-mRNA-1
chr1_4	exon	29099543	29099627	29099543	ID=Msa0159130-mRNA-1:exon:9424;Parent=Msa0159130-mRNA-1
chr1_4	exon	29101147	29101242	29101147	ID=Msa0159130-mRNA-1:exon:9425;Parent=Msa0159130-mRNA-1
chr1_4	exon	29101316	29101447	29101316	ID=Msa0159130-mRNA-1:exon:9426;Parent=Msa0159130-mRNA-1
chr1_4	exon	29103094	29103188	29103094	ID=Msa0159130-mRNA-1:exon:9427;Parent=Msa0159130-mRNA-1
chr1_4	exon	29103489	29103630	29103489	ID=Msa0159130-mRNA-1:exon:9428;Parent=Msa0159130-mRNA-1
chr1_4	exon	29104542	29104820	29104542	ID=Msa0159130-mRNA-1:exon:9429;Parent=Msa0159130-mRNA-1
chr1_4	five_prime_UTR	29090570	29090691	29090570	ID=Msa0159130-mRNA-1:five_prime_utr;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29090692	29090976	29090692	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29091545	29091846	29091545	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29091935	29092076	29091935	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29092350	29092453	29092350	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29094292	29094497	29094292	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29096511	29096597	29096511	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29096782	29096922	29096782	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29097051	29097091	29097051	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29099125	29099193	29099125	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29099344	29099444	29099344	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29099543	29099627	29099543	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29101147	29101242	29101147	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29101316	29101447	29101316	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29103094	29103188	29103094	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	CDS	29103489	29103564	29103489	ID=Msa0159130-mRNA-1:cds;Parent=Msa0159130-mRNA-1
chr1_4	three_prime_UTR	29103565	29103630	29103565	ID=Msa0159130-mRNA-1:three_prime_utr;Parent=Msa0159130-mRNA-1
chr1_4	three_prime_UTR	29104542	29104820	29104542	ID=Msa0159130-mRNA-1:three_prime_utr;Parent=Msa0159130-mRNA-1

Gene Sequence

>Msa0159130

ATGTACGGCGGTGGTGAGCGTGAATGCGAATCTGAGAGCACGATGATGATTATGCAGAACGATGAAGATGAAGAAGACGAAGAAGGTTCTTCTTCTTCTTTCAAGAGCTGGGCAAAGCAAACAGAAGAGAGCTATCAATTGCAGCTCGCACTTGCTCTTCGCATTTCATCTCACTCTGCTTCTTCCGCTCAATCTAATCGCTTCTTGGATTTGGAACCTACCTCCTCTCCTTCTCCTTCTTCTTCTTCTTCCGATTCCCCCCAATCACTTTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAGTTCTAGACGGATTTTACCTAATTCATGGGATGGATGCATATACATGGACTATAAGTACCGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTAATGTCGGTGAAACCGTGTGATAACTCGTCAGTTGTAGTGGTTGCTATTGACAAATCTAGAGACCCTACCTTGAGAGAACTGCTAACTGGGGTATTAAGTCTTTCAAGTAACTGGATTACCATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTGTAGTAGGATGGGGGGAGGATCTTCCGACGAGGAAAATTTAGGTGCGCGCTGGAAGGAATGCTCTGATATTCTTAAAAGCTGTCTACAGTGTATCATTCTTCCAATTGGAAGCTTACCCATTGGCCTTTGTGTCCATCGAGCATTGCTCTTTAAAGTGTTAGCGGATTTAATCAACCTACCGTGTCGAATCGCTAAGGGATGCAAGTATTGTAGAAAGGACATGGGTGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCCGGGGATACATGCCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTTGATCCCTTCTCCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACAATGGCCCAATTGTATTTCTTGGACAATCAAGCACTGCATCTTGTGTTTGATACCACGTCAGGAGGTACTGTTGATTGTAGGGACAAAGTGGATCTTCAGCAAACTGAAATGTTTGGTGCAAACTATGCTGGTGGGAACAACCATATAGGTCCTGGTACCGAGGAACACGTGTCTTTCAATGAAGCAAACCAATCAGTAGTGAATTATTCGAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTACTTCGTGCGGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCCGGACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGTCTACGTCATCCAAACATTGTACTTCTAATGGGCGCTGTTATCCAACCACCAAAATTATCAATAGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAGGTGTTGGTTCCTCAATCAGTGAGAAGCGTCGTTTAAGTATGGCATATGACGTGGTATGTGACTTTGGCCTTTCACGTACAAAGGCAAATACATATCTTTCATCTAAAACAGCTGCTGGAACTGTAAGTTCTACTCCTCAACTGAAAAGCCCTGAATGGATGGCACCAGAAGTCATCAAAGGTGAACTATCAAATGAAAAATGCGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAAATTCCGAGGCATGTGAATCCTCAAGTGGCTGCCTTAATTGAGCTCTGCTGGTCTACGGAACCAAGGAGGCGGCCTTCTTTCTCCTACATTATGAAATGTTTGCAGCAAATAATTGCCAATGCTAAAGTGTGA

Protein sequence

>Msa0159130

MYGGGERECESESTMMIMQNDEDEEDEEGSSSSFKSWAKQTEESYQLQLALALRISSHSASSAQSNRFLDLEPTSSPSPSSSSSDSPQSLSHRFWVNGCLQYSDKVLDGFYLIHGMDAYTWTISTDMQNVGMIPSFESLMSVKPCDNSSVVVVAIDKSRDPTLRELLTGVLSLSSNWITIKDATDQLANLVCSRMGGGSSDEENLGARWKECSDILKSCLQCIILPIGSLPIGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDMGASCIVQFGSDREYMIDLVGRPGDTCQPDSSVNSASSMLIPSPLCHPRFKPVETAEYTKTMAQLYFLDNQALHLVFDTTSGGTVDCRDKVDLQQTEMFGANYAGGNNHIGPGTEEHVSFNEANQSVVNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSGRFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPGVGSSISEKRRLSMAYDVVCDFGLSRTKANTYLSSKTAAGTVSSTPQLKSPEWMAPEVIKGELSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPRHVNPQVAALIELCWSTEPRRRPSFSYIMKCLQQIIANAKV*