Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159260 | KEH40808.1 | 37.833 | 526 | 165 | 15 | 1 | 425 | 1 | 465 | 1.80e-68 | 247 |
| Msa0159260 | KEH40808.1 | 78.865 | 511 | 51 | 2 | 423 | 933 | 12 | 465 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159260 | A0A072VHA4 | 37.833 | 526 | 165 | 15 | 1 | 425 | 1 | 465 | 8.61e-69 | 247 |
| Msa0159260 | A0A072VHA4 | 78.865 | 511 | 51 | 2 | 423 | 933 | 12 | 465 | 0.0 | 791 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0159260 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159260 | MtrunA17_Chr1g0163251 | 81.311 | 412 | 45 | 1 | 423 | 834 | 12 | 391 | 0.0 | 670 |
| Msa0159260 | MtrunA17_Chr1g0163251 | 49.425 | 261 | 65 | 7 | 1 | 207 | 1 | 248 | 6.55e-61 | 213 |
| Msa0159260 | MtrunA17_Chr1g0163251 | 52.688 | 93 | 41 | 2 | 238 | 330 | 157 | 246 | 9.79e-21 | 95.9 |
| Msa0159260 | MtrunA17_Chr1g0163181 | 53.191 | 329 | 126 | 5 | 423 | 731 | 12 | 332 | 3.74e-107 | 338 |
| Msa0159260 | MtrunA17_Chr1g0163181 | 40.892 | 269 | 89 | 6 | 1 | 207 | 1 | 261 | 3.13e-49 | 181 |
| Msa0159260 | MtrunA17_Chr1g0163181 | 66.667 | 111 | 37 | 0 | 322 | 432 | 327 | 437 | 1.80e-38 | 149 |
| Msa0159260 | MtrunA17_Chr1g0163181 | 53.793 | 145 | 60 | 3 | 790 | 933 | 292 | 430 | 1.94e-38 | 149 |
| Msa0159260 | MtrunA17_Chr1g0163181 | 36.458 | 96 | 55 | 2 | 231 | 326 | 168 | 257 | 2.13e-11 | 67.4 |
| Msa0159260 | MtrunA17_Chr1g0163201 | 54.915 | 295 | 102 | 4 | 425 | 701 | 14 | 295 | 1.13e-95 | 307 |
| Msa0159260 | MtrunA17_Chr1g0163201 | 48.133 | 241 | 77 | 4 | 243 | 436 | 165 | 404 | 1.07e-56 | 201 |
| Msa0159260 | MtrunA17_Chr1g0163201 | 41.393 | 244 | 79 | 7 | 20 | 207 | 18 | 253 | 4.51e-40 | 153 |
| Msa0159260 | MtrunA17_Chr1g0163201 | 68.041 | 97 | 31 | 0 | 837 | 933 | 297 | 393 | 3.70e-34 | 135 |
| Msa0159260 | MtrunA17_Chr1g0163261 | 51.246 | 281 | 128 | 2 | 426 | 702 | 19 | 294 | 1.71e-86 | 279 |
| Msa0159260 | MtrunA17_Chr1g0163261 | 37.200 | 250 | 113 | 7 | 1 | 206 | 1 | 250 | 1.02e-33 | 132 |
| Msa0159260 | MtrunA17_Chr1g0163261 | 35.260 | 173 | 99 | 6 | 210 | 370 | 126 | 297 | 3.59e-15 | 77.4 |
| Msa0159260 | MtrunA17_Chr1g0163231 | 53.558 | 267 | 109 | 7 | 431 | 692 | 24 | 280 | 9.23e-84 | 271 |
| Msa0159260 | MtrunA17_Chr1g0163231 | 37.838 | 259 | 97 | 9 | 1 | 207 | 1 | 247 | 1.16e-34 | 134 |
| Msa0159260 | MtrunA17_Chr1g0163231 | 51.250 | 80 | 33 | 4 | 242 | 319 | 159 | 234 | 1.49e-12 | 69.7 |
| Msa0159260 | MtrunA17_Chr1g0171611 | 55.263 | 266 | 94 | 6 | 431 | 692 | 24 | 268 | 2.91e-83 | 270 |
| Msa0159260 | MtrunA17_Chr1g0171611 | 38.235 | 238 | 113 | 10 | 1 | 207 | 1 | 235 | 1.91e-29 | 119 |
| Msa0159260 | MtrunA17_Chr1g0163241 | 68.627 | 153 | 42 | 3 | 420 | 567 | 11 | 162 | 4.13e-58 | 196 |
| Msa0159260 | MtrunA17_Chr1g0163241 | 55.333 | 150 | 17 | 3 | 1 | 108 | 7 | 148 | 7.65e-37 | 136 |
| Msa0159260 | MtrunA17_Chr1g0163151 | 45.175 | 228 | 74 | 4 | 243 | 425 | 1 | 222 | 8.95e-49 | 172 |
| Msa0159260 | MtrunA17_Chr1g0163151 | 59.794 | 97 | 39 | 0 | 837 | 933 | 126 | 222 | 5.26e-33 | 127 |
| Msa0159260 | MtrunA17_Chr1g0163151 | 46.875 | 128 | 63 | 1 | 574 | 701 | 2 | 124 | 7.40e-32 | 124 |
| Msa0159260 | MtrunA17_Chr1g0163151 | 41.860 | 86 | 45 | 1 | 122 | 207 | 2 | 82 | 6.72e-14 | 72.0 |
| Msa0159260 | MtrunA17_Chr1g0163191 | 59.864 | 147 | 45 | 1 | 423 | 555 | 12 | 158 | 1.77e-47 | 166 |
| Msa0159260 | MtrunA17_Chr1g0163191 | 47.899 | 119 | 20 | 1 | 1 | 77 | 1 | 119 | 4.62e-23 | 96.7 |
| Msa0159260 | MtrunA17_Chr1g0163111 | 41.841 | 239 | 75 | 5 | 243 | 426 | 1 | 230 | 2.04e-46 | 166 |
| Msa0159260 | MtrunA17_Chr1g0163111 | 41.558 | 154 | 79 | 3 | 590 | 742 | 10 | 153 | 4.83e-32 | 125 |
| Msa0159260 | MtrunA17_Chr1g0163111 | 48.000 | 125 | 48 | 3 | 810 | 933 | 121 | 229 | 6.55e-26 | 107 |
| Msa0159260 | MtrunA17_Chr1g0163111 | 43.023 | 86 | 41 | 1 | 122 | 207 | 2 | 79 | 3.64e-14 | 73.2 |
| Msa0159260 | MtrunA17_Chr1g0163091 | 50.769 | 130 | 64 | 0 | 575 | 704 | 3 | 132 | 8.63e-38 | 139 |
| Msa0159260 | MtrunA17_Chr1g0163091 | 39.130 | 138 | 77 | 3 | 243 | 375 | 1 | 136 | 2.55e-19 | 86.3 |
| Msa0159260 | MtrunA17_Chr1g0163091 | 48.864 | 88 | 45 | 0 | 123 | 210 | 3 | 90 | 1.06e-18 | 84.3 |
| Msa0159260 | MtrunA17_Chr1g0162151 | 50.769 | 130 | 64 | 0 | 575 | 704 | 3 | 132 | 1.42e-34 | 131 |
| Msa0159260 | MtrunA17_Chr1g0162151 | 37.619 | 210 | 98 | 6 | 243 | 423 | 1 | 206 | 2.06e-25 | 105 |
| Msa0159260 | MtrunA17_Chr1g0162151 | 46.000 | 100 | 50 | 1 | 123 | 218 | 3 | 102 | 3.37e-17 | 81.6 |
| Msa0159260 | MtrunA17_Chr7g0233561 | 30.872 | 298 | 166 | 11 | 423 | 689 | 22 | 310 | 6.12e-30 | 121 |
| Msa0159260 | MtrunA17_Chr1g0163131 | 30.208 | 288 | 163 | 11 | 432 | 693 | 34 | 309 | 5.16e-28 | 115 |
| Msa0159260 | MtrunA17_Chr1g0163131 | 53.165 | 79 | 33 | 2 | 350 | 426 | 232 | 308 | 1.98e-16 | 81.3 |
| Msa0159260 | MtrunA17_Chr1g0163131 | 38.849 | 139 | 77 | 4 | 800 | 932 | 170 | 306 | 1.52e-15 | 78.6 |
| Msa0159260 | MtrunA17_Chr3g0103171 | 28.464 | 267 | 176 | 6 | 431 | 689 | 5 | 264 | 6.78e-28 | 114 |
| Msa0159260 | MtrunA17_Chr1g0162161 | 39.597 | 149 | 80 | 4 | 429 | 570 | 1 | 146 | 4.43e-27 | 108 |
| Msa0159260 | MtrunA17_Chr7g0233521 | 32.014 | 278 | 167 | 9 | 432 | 697 | 2 | 269 | 4.61e-27 | 112 |
| Msa0159260 | MtrunA17_Chr3g0103181 | 29.008 | 262 | 175 | 5 | 431 | 689 | 25 | 278 | 5.51e-27 | 111 |
| Msa0159260 | MtrunA17_Chr8g0390841 | 29.787 | 282 | 169 | 8 | 431 | 689 | 54 | 329 | 1.58e-26 | 115 |
| Msa0159260 | MtrunA17_Chr1g0208771 | 28.319 | 339 | 192 | 13 | 427 | 726 | 8 | 334 | 2.88e-26 | 113 |
| Msa0159260 | MtrunA17_Chr6g0476181 | 44.286 | 140 | 73 | 3 | 432 | 570 | 2 | 137 | 3.83e-26 | 105 |
| Msa0159260 | MtrunA17_Chr1g0163071 | 26.974 | 304 | 184 | 8 | 432 | 703 | 2 | 299 | 1.41e-25 | 108 |
| Msa0159260 | MtrunA17_Chr1g0163101 | 53.933 | 89 | 40 | 1 | 432 | 520 | 33 | 120 | 4.70e-25 | 103 |
| Msa0159260 | MtrunA17_Chr7g0233541 | 29.066 | 289 | 178 | 7 | 432 | 697 | 2 | 286 | 1.65e-24 | 105 |
| Msa0159260 | MtrunA17_Chr1g0163121 | 39.286 | 140 | 78 | 3 | 429 | 568 | 8 | 140 | 3.52e-24 | 99.4 |
| Msa0159260 | MtrunA17_Chr6g0476171 | 44.444 | 135 | 68 | 4 | 575 | 702 | 12 | 146 | 5.85e-24 | 102 |
| Msa0159260 | MtrunA17_Chr6g0476171 | 32.099 | 243 | 109 | 10 | 237 | 424 | 4 | 245 | 3.46e-20 | 91.3 |
| Msa0159260 | MtrunA17_Chr6g0476171 | 49.180 | 61 | 31 | 0 | 872 | 932 | 185 | 245 | 8.76e-11 | 63.5 |
| Msa0159260 | MtrunA17_Chr3g0131891 | 31.047 | 277 | 162 | 9 | 432 | 689 | 35 | 301 | 7.51e-24 | 103 |
| Msa0159260 | MtrunA17_Chr1g0163221 | 28.819 | 288 | 167 | 12 | 432 | 696 | 27 | 299 | 1.75e-23 | 103 |
| Msa0159260 | MtrunA17_Chr1g0163081 | 48.913 | 92 | 46 | 1 | 429 | 520 | 3 | 93 | 4.32e-23 | 96.3 |
| Msa0159260 | MtrunA17_Chr4g0067431 | 27.839 | 273 | 170 | 10 | 431 | 679 | 30 | 299 | 2.07e-22 | 99.4 |
| Msa0159260 | MtrunA17_Chr1g0163141 | 37.838 | 148 | 80 | 3 | 432 | 571 | 11 | 154 | 1.70e-21 | 93.2 |
| Msa0159260 | MtrunA17_Chr7g0233531 | 28.058 | 278 | 178 | 7 | 432 | 697 | 2 | 269 | 3.43e-21 | 94.7 |
| Msa0159260 | MtrunA17_Chr3g0103191 | 30.043 | 233 | 143 | 6 | 431 | 651 | 25 | 249 | 1.54e-20 | 92.0 |
| Msa0159260 | MtrunA17_Chr5g0419201 | 36.029 | 136 | 75 | 3 | 432 | 555 | 32 | 167 | 1.14e-19 | 88.2 |
| Msa0159260 | MtrunA17_Chr7g0233571 | 34.591 | 159 | 95 | 3 | 432 | 588 | 26 | 177 | 1.96e-19 | 88.2 |
| Msa0159260 | MtrunA17_Chr3g0103151 | 40.000 | 110 | 63 | 2 | 431 | 537 | 25 | 134 | 6.88e-19 | 84.7 |
| Msa0159260 | MtrunA17_Chr1g0163161 | 38.346 | 133 | 70 | 4 | 444 | 568 | 1 | 129 | 6.12e-18 | 81.3 |
| Msa0159260 | MtrunA17_Chr6g0467351 | 26.768 | 198 | 128 | 5 | 431 | 612 | 30 | 226 | 2.99e-14 | 73.2 |
| Msa0159260 | MtrunA17_Chr5g0419211 | 34.021 | 97 | 63 | 1 | 610 | 705 | 8 | 104 | 7.07e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159260 | AT3G18990.2 | 24.169 | 331 | 188 | 9 | 416 | 688 | 8 | 333 | 3.18e-17 | 85.1 |
| Msa0159260 | AT3G18990.1 | 24.169 | 331 | 188 | 9 | 416 | 688 | 8 | 333 | 4.89e-17 | 84.0 |
Find 165 sgRNAs with CRISPR-Local
Find 707 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTCAACAAGAAATATTT+TGG | 0.149501 | 1_4:-29396680 | Msa0159260:CDS |
| TAAAGGTTGGATAAAATTTA+TGG | 0.171908 | 1_4:-29392781 | Msa0159260:CDS |
| TATTTCAAGGTTAAGATATT+TGG | 0.184615 | 1_4:-29396555 | Msa0159260:CDS |
| TTTGGAAATTTAAGAAATAT+TGG | 0.199105 | 1_4:+29396705 | None:intergenic |
| AAAGAAGGGATTCTCATTAT+TGG | 0.209323 | 1_4:+29396124 | None:intergenic |
| CCATGGGAAGCATGCTCTTT+TGG | 0.216932 | 1_4:+29394477 | None:intergenic |
| TTTGCAAAGTCTCTCAAATA+TGG | 0.220809 | 1_4:-29396612 | Msa0159260:CDS |
| CCTTGAAGAGCTTGCACTTT+TGG | 0.221116 | 1_4:+29395165 | None:intergenic |
| CCCTGAAGAGCATGCACTTT+TGG | 0.222036 | 1_4:+29394975 | None:intergenic |
| TCCAAAAGTGCATGCTCTTC+AGG | 0.235087 | 1_4:-29394976 | Msa0159260:CDS |
| CCAAAGAGAAAGGGATTTAA+AGG | 0.249801 | 1_4:-29401743 | Msa0159260:CDS |
| CTTAGGGTTTGGTCCCTTGA+TGG | 0.254887 | 1_4:+29395731 | None:intergenic |
| GCATGCACCAAAGAGATTTA+TGG | 0.255225 | 1_4:-29392904 | Msa0159260:CDS |
| GAAAATATGGCAAGAGAAAA+AGG | 0.262154 | 1_4:-29403469 | Msa0159260:CDS |
| CCTTTAAATCCCTTTCTCTT+TGG | 0.263381 | 1_4:+29401743 | None:intergenic |
| GCACACTTGAACAAATTTAA+AGG | 0.264956 | 1_4:-29399459 | Msa0159260:CDS |
| GCACACTTGAACAAATTTAA+AGG | 0.264956 | 1_4:-29402156 | Msa0159260:CDS |
| ACACAATACATTCAAGGTTT+TGG | 0.281549 | 1_4:-29393043 | Msa0159260:CDS |
| AGAAATATGTGGAGAAATAT+TGG | 0.283749 | 1_4:-29396743 | Msa0159260:CDS |
| CCTCTTTCCATAAATCTCTT+TGG | 0.284821 | 1_4:+29392897 | None:intergenic |
| ACGATAGTATTCATGGTTAT+AGG | 0.290213 | 1_4:-29398320 | Msa0159260:CDS |
| TTCTTCAACAGATTTGATAT+TGG | 0.294104 | 1_4:+29403595 | None:intergenic |
| GAAGAAAGCAAAGTGGAAAT+TGG | 0.294808 | 1_4:-29392759 | Msa0159260:CDS |
| TGGAGAATAATGGTGATATT+TGG | 0.299993 | 1_4:-29396656 | Msa0159260:CDS |
| ATATTTCTCCACATATTTCT+TGG | 0.307927 | 1_4:+29396746 | None:intergenic |
| ATATTTCTCCACATACTTCT+TGG | 0.308080 | 1_4:+29403825 | None:intergenic |
| ATTTCTTGTTGAACACCATT+TGG | 0.331479 | 1_4:+29396687 | None:intergenic |
| TTGGAAATTTAAGAAATATT+GGG | 0.332062 | 1_4:+29396706 | None:intergenic |
| AGAAGTATGTGGAGAAATAT+TGG | 0.333437 | 1_4:-29403822 | Msa0159260:CDS |
| GCTCAAAAGACAAGAAAATA+TGG | 0.333444 | 1_4:-29403482 | Msa0159260:CDS |
| CCTTGCAACTTCTTAGGGTT+TGG | 0.347894 | 1_4:+29395720 | None:intergenic |
| AATTATTACGATAGTATTCA+TGG | 0.354510 | 1_4:-29398327 | Msa0159260:CDS |
| GTTATCATTTGAGCTTCCTT+TGG | 0.355140 | 1_4:+29396423 | None:intergenic |
| AGGGATTTAAAGGAACTTCT+AGG | 0.360588 | 1_4:-29401733 | Msa0159260:CDS |
| TTTGGGAATTCAAGGAATAT+CGG | 0.361862 | 1_4:+29403784 | None:intergenic |
| GTGTTTGATGTTTCAATTGT+TGG | 0.364550 | 1_4:-29398207 | Msa0159260:CDS |
| CACACTTGAACAAATTTAAA+GGG | 0.370401 | 1_4:-29399458 | Msa0159260:CDS |
| TATAAAGAAGGGATCTCTTC+TGG | 0.374152 | 1_4:-29395588 | Msa0159260:CDS |
| TATTTCTCCACATACTTCTT+GGG | 0.374393 | 1_4:+29403826 | None:intergenic |
| TATTTCTCCACATATTTCTT+GGG | 0.381095 | 1_4:+29396747 | None:intergenic |
| AATTAACCCTACCGGGTGTT+TGG | 0.385019 | 1_4:+29393014 | None:intergenic |
| TATAAAGAAGGGATCTCTTA+TGG | 0.386855 | 1_4:-29395240 | Msa0159260:CDS |
| CCAAAAGTGCAAGCTCTTCA+AGG | 0.388417 | 1_4:-29395165 | Msa0159260:intron |
| TTTGGTATTTCACTCTCATC+AGG | 0.395950 | 1_4:+29396441 | None:intergenic |
| GAAGCTCAAATGATAACAAA+TGG | 0.398449 | 1_4:-29396417 | Msa0159260:CDS |
| CACACTTGAACAAATTTAAA+GGG | 0.400117 | 1_4:-29402155 | Msa0159260:CDS |
| ATTCATGGTTATAGGTTCTC+TGG | 0.402055 | 1_4:-29398312 | Msa0159260:CDS |
| CTCTCATTAACAACTTCAAC+TGG | 0.412647 | 1_4:+29400716 | None:intergenic |
| TGTCATTAAAACTTCAAAGA+AGG | 0.419675 | 1_4:+29396109 | None:intergenic |
| AAAATTGTGGAGTTGAAAAT+GGG | 0.422112 | 1_4:-29392864 | Msa0159260:CDS |
| GAACACCATTTGGGAATTCA+AGG | 0.431111 | 1_4:+29403776 | None:intergenic |
| GTGTTTAAAGTTTCCATTGT+GGG | 0.433176 | 1_4:-29392696 | Msa0159260:CDS |
| TTGGGAATTCAAGGAATATC+GGG | 0.437720 | 1_4:+29403785 | None:intergenic |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.438669 | 1_4:-29398408 | Msa0159260:CDS |
| AGTTGGTGAGGACAAGACTA+TGG | 0.440819 | 1_4:-29402118 | Msa0159260:CDS |
| GATGAAACACAATACATTCA+AGG | 0.445828 | 1_4:-29393049 | Msa0159260:CDS |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.446068 | 1_4:-29398270 | Msa0159260:CDS |
| AGGAAGTCATGAAAACTCTC+TGG | 0.451275 | 1_4:-29398388 | Msa0159260:CDS |
| CTTTCAAGAAGATGATTTGT+TGG | 0.452264 | 1_4:+29401704 | None:intergenic |
| CCAAAAGTGCATGCTCTTCA+GGG | 0.454566 | 1_4:-29394975 | Msa0159260:intron |
| GACTTACCATCCTGCATCCA+TGG | 0.454683 | 1_4:+29402292 | None:intergenic |
| TATTGGTGGATCATATTTCA+AGG | 0.456312 | 1_4:-29396568 | Msa0159260:CDS |
| AGTTGGTGAGGACAAGACTA+TGG | 0.466718 | 1_4:-29399421 | Msa0159260:CDS |
| CGTGGTTGTCAGTTCAGTAA+AGG | 0.468915 | 1_4:-29392798 | Msa0159260:CDS |
| TTTCAAGAAGATGATTTGTT+GGG | 0.470648 | 1_4:+29401705 | None:intergenic |
| AACTGACAACCACGAATACT+AGG | 0.474382 | 1_4:+29392807 | None:intergenic |
| ATTTATTATCCTAGTATTCG+TGG | 0.474870 | 1_4:-29392816 | Msa0159260:CDS |
| GTTATAGGTTCTCTGGAGGT+TGG | 0.476039 | 1_4:-29398305 | Msa0159260:CDS |
| TCTTCTAATTCTATGACTAC+TGG | 0.476068 | 1_4:-29395858 | Msa0159260:CDS |
| TACTATTACTAAAGCCATCA+AGG | 0.479367 | 1_4:-29395745 | Msa0159260:CDS |
| GTCATTAAAACTTCAAAGAA+GGG | 0.479979 | 1_4:+29396110 | None:intergenic |
| TGGTGATAATCCAAAGAGAA+AGG | 0.485025 | 1_4:-29401753 | Msa0159260:CDS |
| TTACGCCCATGGTCATATCT+TGG | 0.485636 | 1_4:-29396081 | Msa0159260:intron |
| GGGATTGCAAATTTACGAGT+TGG | 0.487005 | 1_4:-29399438 | Msa0159260:CDS |
| GAGACACTGGAGAAACTTGT+AGG | 0.490241 | 1_4:-29395542 | Msa0159260:CDS |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_4:-29395062 | Msa0159260:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_4:-29395252 | Msa0159260:intron |
| CCATGACAAGGTTATAAAGA+AGG | 0.491612 | 1_4:-29395600 | Msa0159260:intron |
| AATCTTACGCCCATGGATGC+AGG | 0.492072 | 1_4:-29402302 | Msa0159260:CDS |
| ATATTTCTTAAATTTCCAAA+TGG | 0.500935 | 1_4:-29396702 | Msa0159260:CDS |
| AACAATAGAACAAACAGCTA+AGG | 0.501698 | 1_4:+29398176 | None:intergenic |
| TGAAAATGAGGGGACGATCA+TGG | 0.504241 | 1_4:-29398362 | Msa0159260:CDS |
| GGGATAGCAAACTTAAGAGT+TGG | 0.506773 | 1_4:-29402135 | Msa0159260:CDS |
| ATAGTAATAGTGAATAAAAG+TGG | 0.509655 | 1_4:+29395762 | None:intergenic |
| CCATGACAAGGTTATAAAGA+AGG | 0.510696 | 1_4:-29394564 | Msa0159260:intron |
| ATATTCCTTGAATTCCCAAA+TGG | 0.511521 | 1_4:-29403781 | Msa0159260:CDS |
| CCAAAGAGATTTATGGAAAG+AGG | 0.511759 | 1_4:-29392897 | Msa0159260:CDS |
| AAGATGCCGGAGAAACTTGT+AGG | 0.513621 | 1_4:-29395194 | Msa0159260:CDS |
| AAGCTCAAATGATAACAAAT+GGG | 0.514121 | 1_4:-29396416 | Msa0159260:CDS |
| AAGACATTGGAGAAACTTGT+AGG | 0.516345 | 1_4:-29395004 | Msa0159260:CDS |
| CAATTACCAGGTTATAAAGA+AGG | 0.517705 | 1_4:-29401788 | Msa0159260:intron |
| AAGACATTGGAGAAACATCT+AGG | 0.517707 | 1_4:-29394506 | Msa0159260:CDS |
| TCATACTTGAACAAATTTGA+AGG | 0.519341 | 1_4:-29395948 | Msa0159260:CDS |
| CATACTTGAACAAATTTGAA+GGG | 0.523429 | 1_4:-29395947 | Msa0159260:CDS |
| AAGGGTCCTACAAGTTTCTC+CGG | 0.528798 | 1_4:+29395188 | None:intergenic |
| GGGATTGCAAGCTTAAGAGT+TGG | 0.529065 | 1_4:-29395927 | Msa0159260:CDS |
| ACAATAGAACAAACAGCTAA+GGG | 0.530051 | 1_4:+29398177 | None:intergenic |
| ATATTATCCTATGAAAATCA+AGG | 0.530953 | 1_4:+29403985 | None:intergenic |
| GTTGAAGTTGTTAAAGAGAG+TGG | 0.533320 | 1_4:-29402363 | Msa0159260:CDS |
| ATGATCATGATATTCTAAAG+AGG | 0.534079 | 1_4:-29395028 | Msa0159260:CDS |
| ATTCTAAAGAGGAGAGACAC+TGG | 0.536518 | 1_4:-29395555 | Msa0159260:CDS |
| GTTGTCAGTTCAGTAAAGGT+TGG | 0.536590 | 1_4:-29392794 | Msa0159260:CDS |
| GGCATGGTTAAGACTTAAGA+AGG | 0.537774 | 1_4:-29402403 | Msa0159260:CDS |
| GTGATAAAGATGTTCTAAAG+AGG | 0.539402 | 1_4:-29395218 | Msa0159260:CDS |
| TAACCAACATATTGCTGCCA+TGG | 0.540173 | 1_4:+29400642 | None:intergenic |
| TGCAAATTTACGAGTTGGTG+AGG | 0.540428 | 1_4:-29399433 | Msa0159260:CDS |
| TGCAAGCTTAAGAGTTGGAG+AGG | 0.542791 | 1_4:-29395922 | Msa0159260:CDS |
| CTCTCTGGAGTTGAAAATGA+GGG | 0.543251 | 1_4:-29398373 | Msa0159260:CDS |
| CATCCATGGGCGTAAGATTG+TGG | 0.545061 | 1_4:+29402306 | None:intergenic |
| CGTCCATGGCAGCAATATGT+TGG | 0.549161 | 1_4:-29400645 | Msa0159260:intron |
| ATTCTAAAGAGGAAAGACAT+TGG | 0.551775 | 1_4:-29395017 | Msa0159260:CDS |
| TACTTTGCAGGTGGGGACAG+AGG | 0.553424 | 1_4:-29402427 | Msa0159260:intron |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_4:-29395061 | Msa0159260:intron |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_4:-29395251 | Msa0159260:intron |
| CATGACAAGGTTATAAAGAA+GGG | 0.554767 | 1_4:-29395599 | Msa0159260:intron |
| GGTGATAATCCAAAGAGAAA+GGG | 0.555110 | 1_4:-29401752 | Msa0159260:CDS |
| TGGATTATCACCACAAGAAG+AGG | 0.557132 | 1_4:+29401763 | None:intergenic |
| ACTCTCTGGAGTTGAAAATG+AGG | 0.560078 | 1_4:-29398374 | Msa0159260:CDS |
| CTAATTCTATGACTACTGGT+TGG | 0.561386 | 1_4:-29395854 | Msa0159260:CDS |
| GAGAATTCCCAAGAAATATG+TGG | 0.561715 | 1_4:-29396754 | Msa0159260:CDS |
| CATGGTTATAGGTTCTCTGG+AGG | 0.568382 | 1_4:-29398309 | Msa0159260:CDS |
| CAGTGGAGGCATGATTAAGA+AGG | 0.573799 | 1_4:-29400753 | Msa0159260:CDS |
| TTGTCAAAATCTTACGTCCA+TGG | 0.576626 | 1_4:-29400659 | Msa0159260:CDS |
| AGAGGAGACAGCTATGAAAG+TGG | 0.577915 | 1_4:-29395904 | Msa0159260:CDS |
| TGTGTTTCTCCAGATTCAGA+AGG | 0.578280 | 1_4:-29398590 | Msa0159260:intron |
| TATGATCTTGAAAAGTTGCA+TGG | 0.578670 | 1_4:+29395966 | None:intergenic |
| TACTTTGCAGGTAGGGACAG+TGG | 0.579327 | 1_4:-29400770 | Msa0159260:intron |
| AGGTGGGGACAGAGGAGGCA+TGG | 0.580810 | 1_4:-29402419 | Msa0159260:CDS |
| AATTACCAGGTTATAAAGAA+GGG | 0.583013 | 1_4:-29401787 | Msa0159260:intron |
| TTGCCACAATCTTACGCCCA+TGG | 0.586417 | 1_4:-29402309 | Msa0159260:CDS |
| ACTTACCATCCTGCATCCAT+GGG | 0.587612 | 1_4:+29402293 | None:intergenic |
| ATTCTACCGTGGAAAGACAT+TGG | 0.588028 | 1_4:-29394519 | Msa0159260:CDS |
| CCAAAAGAGCATGCTTCCCA+TGG | 0.588789 | 1_4:-29394477 | Msa0159260:intron |
| GAAATACTTGTCTCCTAGAG+CGG | 0.589908 | 1_4:-29392737 | Msa0159260:CDS |
| CCAAACCCTAAGAAGTTGCA+AGG | 0.590895 | 1_4:-29395720 | Msa0159260:intron |
| GAGGATTCCCAAGAAGTATG+TGG | 0.591680 | 1_4:-29403833 | Msa0159260:CDS |
| GTGATCGTGATATTCTAAAG+AGG | 0.591830 | 1_4:-29395566 | Msa0159260:CDS |
| ATGACACAAACTTACGCCCA+TGG | 0.594951 | 1_4:-29396092 | Msa0159260:CDS |
| ATATTTGCAGAATGTTCCAA+AGG | 0.598638 | 1_4:-29398424 | Msa0159260:intron |
| AAAGAAGGAGTTGAAGTGAG+TGG | 0.599535 | 1_4:-29403548 | Msa0159260:CDS |
| AGCAAACTTAAGAGTTGGTG+AGG | 0.601023 | 1_4:-29402130 | Msa0159260:CDS |
| GTTCTAAAGAGGAAAGATGC+CGG | 0.601662 | 1_4:-29395207 | Msa0159260:CDS |
| ATTCATAAAAGAATGCAAAG+TGG | 0.613826 | 1_4:-29398277 | Msa0159260:CDS |
| GTTTCTCCAATGTCTTTCCA+CGG | 0.615143 | 1_4:+29394513 | None:intergenic |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1_4:-29396738 | Msa0159260:CDS |
| ACTATTACTAAAGCCATCAA+GGG | 0.618938 | 1_4:-29395744 | Msa0159260:CDS |
| ATTTATGGAAGAAAGCAAAG+TGG | 0.622753 | 1_4:-29392766 | Msa0159260:CDS |
| AAATTGTGGAGTTGAAAATG+GGG | 0.628496 | 1_4:-29392863 | Msa0159260:CDS |
| AAAGAAGGGACCTCTTCTTG+TGG | 0.632268 | 1_4:-29401773 | Msa0159260:CDS |
| AATTGTGGAGTTGAAAATGG+GGG | 0.632867 | 1_4:-29392862 | Msa0159260:CDS |
| TTTGGTAAATTCCAAACACC+CGG | 0.637463 | 1_4:-29393025 | Msa0159260:intron |
| TTTGCAGGTGGGGACAGAGG+AGG | 0.643905 | 1_4:-29402424 | Msa0159260:intron |
| TGATGAGAGTGAAATACCAA+AGG | 0.651200 | 1_4:-29396439 | Msa0159260:CDS |
| ACTCACAAGAGATCTTCTAT+CGG | 0.653227 | 1_4:+29399374 | None:intergenic |
| ATTGTGGAGTTGAAAATGGG+GGG | 0.654265 | 1_4:-29392861 | Msa0159260:CDS |
| TGATGTGTATTCAAAATACC+CGG | 0.654603 | 1_4:-29398534 | Msa0159260:intron |
| TGTGTTTAAAGTTTCCATTG+TGG | 0.655197 | 1_4:-29392697 | Msa0159260:CDS |
| TCTCTGGAGTTGAAAATGAG+GGG | 0.665410 | 1_4:-29398372 | Msa0159260:CDS |
| TTACGCCCATGGATGCAGGA+TGG | 0.665735 | 1_4:-29402298 | Msa0159260:intron |
| CAATAGAACAAACAGCTAAG+GGG | 0.667474 | 1_4:+29398178 | None:intergenic |
| ACTTACCAAGATATGACCAT+GGG | 0.667874 | 1_4:+29396076 | None:intergenic |
| TATAAGGTTCTATCCCACAA+TGG | 0.669677 | 1_4:+29392683 | None:intergenic |
| TACTTACCAAGATATGACCA+TGG | 0.678715 | 1_4:+29396075 | None:intergenic |
| GTGATAAGCATATTCTACCG+TGG | 0.706198 | 1_4:-29394530 | Msa0159260:CDS |
| TTTGCAGGTAGGGACAGTGG+AGG | 0.713017 | 1_4:-29400767 | Msa0159260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATATATTTTTATA+GGG | + | chr1_4:29403328-29403347 | None:intergenic | 0.0% |
| !!! | ATTTTATAATATATTTTTAT+AGG | + | chr1_4:29403329-29403348 | None:intergenic | 0.0% |
| !! | ATAAAAATATATTATAAAAT+AGG | - | chr1_4:29403329-29403348 | Msa0159260:intron | 0.0% |
| !! | AAAAAATCGTAAAAAAAATT+CGG | + | chr1_4:29393485-29393504 | None:intergenic | 10.0% |
| !! | AATTAAAACTGAAAAATTTA+CGG | + | chr1_4:29393509-29393528 | None:intergenic | 10.0% |
| !! | ATTAAAAGTCAAAAAAATTT+CGG | + | chr1_4:29393545-29393564 | None:intergenic | 10.0% |
| !!! | TTTGAAAATTTTTTTTTTGA+AGG | - | chr1_4:29393599-29393618 | Msa0159260:intron | 10.0% |
| !!! | AAACTTTTAGTTTTTTAATT+TGG | - | chr1_4:29395031-29395050 | Msa0159260:CDS | 10.0% |
| !! | ACTAATATTTAATCAATTAT+TGG | + | chr1_4:29395069-29395088 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAATAAACCAAA+TGG | - | chr1_4:29395223-29395242 | Msa0159260:CDS | 10.0% |
| !! | TTTAAAAAAATAAACCAAAT+GGG | - | chr1_4:29395224-29395243 | Msa0159260:CDS | 10.0% |
| !!! | ATCATTTTATATTTATTTTG+GGG | + | chr1_4:29395272-29395291 | None:intergenic | 10.0% |
| !!! | CTATCATTTTATATTTATTT+TGG | + | chr1_4:29395274-29395293 | None:intergenic | 10.0% |
| !! | TTTAAAAAAAAATGACTAAT+AGG | + | chr1_4:29395335-29395354 | None:intergenic | 10.0% |
| !! | TCAAAGTAAAAAATATTAAA+GGG | + | chr1_4:29398680-29398699 | None:intergenic | 10.0% |
| !! | TTCAAAGTAAAAAATATTAA+AGG | + | chr1_4:29398681-29398700 | None:intergenic | 10.0% |
| !!! | ATATTTTTTACTTTGAAATT+CGG | - | chr1_4:29398684-29398703 | Msa0159260:intron | 10.0% |
| !!! | TTAATTTTTAAATATATTGG+TGG | - | chr1_4:29400112-29400131 | Msa0159260:intron | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | + | chr1_4:29401239-29401258 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | + | chr1_4:29401239-29401258 | None:intergenic | 10.0% |
| !! | TTAACTAAATAAAGAAATTA+AGG | + | chr1_4:29401239-29401258 | None:intergenic | 10.0% |
| !!! | AATTAAAATTGTTATTAATC+TGG | - | chr1_4:29402323-29402342 | Msa0159260:CDS | 10.0% |
| !!! | CTATTTAAAATTAATGTTTA+AGG | + | chr1_4:29402454-29402473 | None:intergenic | 10.0% |
| !! | TAAAATTTCTTTCAAATTTA+TGG | + | chr1_4:29402477-29402496 | None:intergenic | 10.0% |
| !! | ATAAAAATAATAATCTAAAG+AGG | - | chr1_4:29402887-29402906 | Msa0159260:intron | 10.0% |
| !!! | GAATTATTAAATATTTTGTA+AGG | + | chr1_4:29403183-29403202 | None:intergenic | 10.0% |
| !! | ACAAAATATTTAATAATTCA+AGG | - | chr1_4:29403184-29403203 | Msa0159260:intron | 10.0% |
| !!! | AAAATTAGAGATTTTTAAAT+AGG | + | chr1_4:29403297-29403316 | None:intergenic | 10.0% |
| !!! | TAAAAATCTCTAATTTTTTT+TGG | - | chr1_4:29403300-29403319 | Msa0159260:intron | 10.0% |
| !!! | AAAAATCTCTAATTTTTTTT+GGG | - | chr1_4:29403301-29403320 | Msa0159260:intron | 10.0% |
| !!! | TAAAATCTCTAATTTTTTTT+TGG | - | chr1_4:29403358-29403377 | Msa0159260:intron | 10.0% |
| !!! | AAAATCTCTAATTTTTTTTT+GGG | - | chr1_4:29403359-29403378 | Msa0159260:intron | 10.0% |
| !! | ATAAAAAATATATAACCATT+TGG | - | chr1_4:29403431-29403450 | Msa0159260:intron | 10.0% |
| !!! | ATAATGTATAAATGTTATTT+TGG | - | chr1_4:29403755-29403774 | Msa0159260:CDS | 10.0% |
| !!! | TGTTCAACAAAAAATATTTT+GGG | - | chr1_4:29392936-29392955 | Msa0159260:intron | 15.0% |
| !!! | ATATTTGGTTTCAAAAATAT+TGG | - | chr1_4:29392974-29392993 | Msa0159260:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAATATT+GGG | - | chr1_4:29392975-29392994 | Msa0159260:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1_4:29393078-29393097 | None:intergenic | 15.0% |
| !!! | AAAACTGAATTTTTTTTTGA+AGG | + | chr1_4:29393459-29393478 | None:intergenic | 15.0% |
| !! | AAAAATCGTAAAAAAAATTC+GGG | + | chr1_4:29393484-29393503 | None:intergenic | 15.0% |
| !! | ATTAAAACTGAAAAATTTAC+GGG | + | chr1_4:29393508-29393527 | None:intergenic | 15.0% |
| !! | TTAAAAAAAATGAGAATCTT+AGG | - | chr1_4:29394091-29394110 | Msa0159260:intron | 15.0% |
| !! | ATTTATTCATGATGATAAAT+AGG | + | chr1_4:29394164-29394183 | None:intergenic | 15.0% |
| !! | ATCAATTATTGGTAAATTAA+GGG | + | chr1_4:29395058-29395077 | None:intergenic | 15.0% |
| !! | AATCAATTATTGGTAAATTA+AGG | + | chr1_4:29395059-29395078 | None:intergenic | 15.0% |
| !! | TATAAAATGATAGAAACAAA+AGG | - | chr1_4:29395281-29395300 | Msa0159260:intron | 15.0% |
| !!! | CATTTTTTTTTAAATATACG+CGG | - | chr1_4:29395341-29395360 | Msa0159260:intron | 15.0% |
| !!! | ATCATCAAGATTTAAAATAA+CGG | + | chr1_4:29395784-29395803 | None:intergenic | 15.0% |
| !!! | TATTTTTGGAAACAATATAT+TGG | + | chr1_4:29396124-29396143 | None:intergenic | 15.0% |
| !! | AAATAAAAGTTTAGATAAGT+TGG | + | chr1_4:29397721-29397740 | None:intergenic | 15.0% |
| !! | ATCAATTATTGATAAATTCA+TGG | + | chr1_4:29397755-29397774 | None:intergenic | 15.0% |
| !! | ACATTATTTCAAAATCATTA+GGG | + | chr1_4:29397853-29397872 | None:intergenic | 15.0% |
| !! | AACATTATTTCAAAATCATT+AGG | + | chr1_4:29397854-29397873 | None:intergenic | 15.0% |
| !!! | ACTTATCAATAATTTGAAAT+AGG | + | chr1_4:29397958-29397977 | None:intergenic | 15.0% |
| !! | ACGATTAATTACATAAAATA+TGG | - | chr1_4:29398184-29398203 | Msa0159260:intron | 15.0% |
| !! | TATAATCCATATTTCATAAA+TGG | + | chr1_4:29398726-29398745 | None:intergenic | 15.0% |
| !!! | TATGAAATATGGATTATATT+TGG | - | chr1_4:29398728-29398747 | Msa0159260:intron | 15.0% |
| !! | ATAAGTTGTAAGTAAAATTA+TGG | + | chr1_4:29399313-29399332 | None:intergenic | 15.0% |
| !! | AAACTATATTGTATGAAAAA+AGG | - | chr1_4:29399413-29399432 | Msa0159260:CDS | 15.0% |
| !!! | TCAATAGTATTAAAACATTT+TGG | - | chr1_4:29399664-29399683 | Msa0159260:intron | 15.0% |
| !! | AATATTATCTTATGAAAATC+GGG | + | chr1_4:29399799-29399818 | None:intergenic | 15.0% |
| !! | CAATATTATCTTATGAAAAT+CGG | + | chr1_4:29399800-29399819 | None:intergenic | 15.0% |
| !! | AAAGAAATTAACGTTTATAA+AGG | + | chr1_4:29399902-29399921 | None:intergenic | 15.0% |
| !! | TTGGAAATTTAAGAAATATT+GGG | + | chr1_4:29399991-29400010 | None:intergenic | 15.0% |
| !! | TTTGGAAATTTAAGAAATAT+TGG | + | chr1_4:29399992-29400011 | None:intergenic | 15.0% |
| !! | ATATTTCTTAAATTTCCAAA+TGG | - | chr1_4:29399992-29400011 | Msa0159260:intron | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | - | chr1_4:29400053-29400072 | Msa0159260:intron | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | - | chr1_4:29400054-29400073 | Msa0159260:intron | 15.0% |
| !!! | ATAAGTAAATTCATTTTCAA+AGG | + | chr1_4:29400392-29400411 | None:intergenic | 15.0% |
| !!! | TTGATAATAATATTCTAAAG+AGG | - | chr1_4:29401857-29401876 | Msa0159260:intron | 15.0% |
| !! | TAAATTATTGATAAGTTTAG+AGG | + | chr1_4:29402349-29402368 | None:intergenic | 15.0% |
| !!! | TTTAAGGATACATTTTTTTA+GGG | + | chr1_4:29402413-29402432 | None:intergenic | 15.0% |
| !!! | TTTAAGGATACATTTTTTTA+GGG | + | chr1_4:29402413-29402432 | None:intergenic | 15.0% |
| !! | CAAAATATTAAATAGTTCAA+GGG | - | chr1_4:29402739-29402758 | Msa0159260:intron | 15.0% |
| !! | TTTCTAATATATAAGTTTAG+AGG | + | chr1_4:29403068-29403087 | None:intergenic | 15.0% |
| !!! | AGAAAAATCCATTTTTATAT+TGG | - | chr1_4:29403083-29403102 | Msa0159260:intron | 15.0% |
| !!! | GAAAAATCCATTTTTATATT+GGG | - | chr1_4:29403084-29403103 | Msa0159260:intron | 15.0% |
| !!! | ACTTTTAAATAATTTGTGAA+TGG | - | chr1_4:29403156-29403175 | Msa0159260:intron | 15.0% |
| !!! | CTTTTAAATAATTTGTGAAT+GGG | - | chr1_4:29403157-29403176 | Msa0159260:intron | 15.0% |
| !!! | CATATCAATAGTTTTTATAT+AGG | + | chr1_4:29403237-29403256 | None:intergenic | 15.0% |
| !! | AAAAACTATTGATATGTTTA+AGG | - | chr1_4:29403241-29403260 | Msa0159260:intron | 15.0% |
| !! | AAAACTATTGATATGTTTAA+GGG | - | chr1_4:29403242-29403261 | Msa0159260:intron | 15.0% |
| !!! | AAAGATTTAGAGATTTTTAA+AGG | + | chr1_4:29403387-29403406 | None:intergenic | 15.0% |
| !!! | AAAATATCCTTGATTTTCAT+AGG | - | chr1_4:29392702-29392721 | Msa0159260:CDS | 20.0% |
| !! | ATATTATCCTATGAAAATCA+AGG | + | chr1_4:29392712-29392731 | None:intergenic | 20.0% |
| !!! | GTGTTCAACAAAAAATATTT+TGG | - | chr1_4:29392935-29392954 | Msa0159260:intron | 20.0% |
| !!! | TTTGCAAAGTTTCTAAAATA+TGG | - | chr1_4:29393003-29393022 | Msa0159260:intron | 20.0% |
| !!! | CTCTTAACTTTTAAATACAT+AGG | - | chr1_4:29393030-29393049 | Msa0159260:CDS | 20.0% |
| !! | TAAATGATTAAACTTTGCAA+GGG | + | chr1_4:29393719-29393738 | None:intergenic | 20.0% |
| !! | TTAAATGATTAAACTTTGCA+AGG | + | chr1_4:29393718-29393737 | None:intergenic | 20.0% |
| !! | ACAAAAAAAAAAAATAAGCC+AGG | + | chr1_4:29393429-29393448 | None:intergenic | 20.0% |
| !! | TTAAATGATTAAACTTTGCA+AGG | - | chr1_4:29393718-29393737 | Msa0159260:intron | 20.0% |
| !! | TAAATGATTAAACTTTGCAA+GGG | - | chr1_4:29393719-29393738 | Msa0159260:intron | 20.0% |
| !! | AATCTATAACATGCATAAAT+TGG | - | chr1_4:29394116-29394135 | Msa0159260:intron | 20.0% |
| !! | ATCTATAACATGCATAAATT+GGG | - | chr1_4:29394117-29394136 | Msa0159260:intron | 20.0% |
| !! | TATTAACTAATGCCAAAATT+AGG | + | chr1_4:29394446-29394465 | None:intergenic | 20.0% |
| !!! | CAACTTGTAAGTTATATTTT+TGG | + | chr1_4:29394669-29394688 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTACAAGT+TGG | - | chr1_4:29394667-29394686 | Msa0159260:intron | 20.0% |
| !! | GATATTAATTTCTTTAAGCT+TGG | + | chr1_4:29394770-29394789 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTAATATCGCA+AGG | - | chr1_4:29394773-29394792 | Msa0159260:intron | 20.0% |
| !!! | TTTTATATTTATTTTGGGGT+TGG | + | chr1_4:29395268-29395287 | None:intergenic | 20.0% |
| !! | ATTTAAACTAGAGAAACATT+TGG | + | chr1_4:29395636-29395655 | None:intergenic | 20.0% |
| !! | GACAATGTAACATAAAAAAA+GGG | + | chr1_4:29396020-29396039 | None:intergenic | 20.0% |
| !! | TGACAATGTAACATAAAAAA+AGG | + | chr1_4:29396021-29396040 | None:intergenic | 20.0% |
| !!! | AATTAGTAGACATTTTTAGA+TGG | + | chr1_4:29396085-29396104 | None:intergenic | 20.0% |
| !!! | CTAAAAATGTCTACTAATTT+TGG | - | chr1_4:29396086-29396105 | Msa0159260:CDS | 20.0% |
| !!! | AGATTAGTGGATTTTATTTT+TGG | + | chr1_4:29396138-29396157 | None:intergenic | 20.0% |
| !! | AACAAATTATTAGAGATTAG+TGG | + | chr1_4:29396151-29396170 | None:intergenic | 20.0% |
| !! | ACTAGTAAGTGTTTATATAA+GGG | + | chr1_4:29397066-29397085 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+AGG | + | chr1_4:29397067-29397086 | None:intergenic | 20.0% |
| !! | TTATATAAACACTTACTAGT+TGG | - | chr1_4:29397066-29397085 | Msa0159260:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | - | chr1_4:29397067-29397086 | Msa0159260:intron | 20.0% |
| !!! | CAACTTGTAAGTTATATTTT+TGG | + | chr1_4:29394669-29394688 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTACAAGT+TGG | - | chr1_4:29394667-29394686 | Msa0159260:intron | 20.0% |
| !! | GATATTAATTTCTTTAAGCT+TGG | + | chr1_4:29394770-29394789 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTAATATCGCA+AGG | - | chr1_4:29394773-29394792 | Msa0159260:intron | 20.0% |
| !!! | GTTTTTTGTTCTTTCTTATT+TGG | - | chr1_4:29397498-29397517 | Msa0159260:intron | 20.0% |
| !! | TCAAAGAGAATAGAATTTAA+AGG | - | chr1_4:29397652-29397671 | Msa0159260:intron | 20.0% |
| !!! | TAGAATTTAAAGGATTTTCT+AGG | - | chr1_4:29397662-29397681 | Msa0159260:intron | 20.0% |
| !! | TCAAATTATTGATAAGTTCA+AGG | - | chr1_4:29397961-29397980 | Msa0159260:intron | 20.0% |
| !!! | TTTTATGTAATTAATCGTAC+CGG | + | chr1_4:29398182-29398201 | None:intergenic | 20.0% |
| !! | AATTATTACGATAGTATTCA+TGG | - | chr1_4:29398367-29398386 | Msa0159260:CDS | 20.0% |
| !!! | TTTAAGTTTGAAGTTTGTTT+CGG | - | chr1_4:29399006-29399025 | Msa0159260:intron | 20.0% |
| !! | TTGTTCTCAAAAAAAAAGAA+AGG | - | chr1_4:29399445-29399464 | Msa0159260:CDS | 20.0% |
| !! | TGTTCTCAAAAAAAAAGAAA+GGG | - | chr1_4:29399446-29399465 | Msa0159260:CDS | 20.0% |
| !! | ATATTATCTTATGAAAATCG+GGG | + | chr1_4:29399798-29399817 | None:intergenic | 20.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | - | chr1_4:29400015-29400034 | Msa0159260:intron | 20.0% |
| !! | TATTTCAAGGTTAAGATATT+TGG | - | chr1_4:29400139-29400158 | Msa0159260:intron | 20.0% |
| !!! | TTCATCAACAGATTTTATAT+TGG | + | chr1_4:29400191-29400210 | None:intergenic | 20.0% |
| !! | AAGGAAACATGATATTAAAA+AGG | + | chr1_4:29400373-29400392 | None:intergenic | 20.0% |
| !! | TCTAAAAATGTCTACTAATT+TGG | - | chr1_4:29396085-29396104 | Msa0159260:CDS | 20.0% |
| !! | CAGTAATCTATAATAAAATG+TGG | - | chr1_4:29400682-29400701 | Msa0159260:CDS | 20.0% |
| !!! | CAACTTCTAAGTTATATTTT+TGG | + | chr1_4:29400877-29400896 | None:intergenic | 20.0% |
| !! | CAAAAATATAACTTAGAAGT+TGG | - | chr1_4:29400875-29400894 | Msa0159260:intron | 20.0% |
| !! | ATAGTAATAGTGAATAAAAG+TGG | + | chr1_4:29400935-29400954 | None:intergenic | 20.0% |
| !!! | ACATTTTTTTAGGGAATTTA+AGG | + | chr1_4:29402404-29402423 | None:intergenic | 20.0% |
| !!! | GTTTAAGGATACATTTTTTT+AGG | + | chr1_4:29402414-29402433 | None:intergenic | 20.0% |
| !!! | GTTTAAGGATACATTTTTTT+AGG | + | chr1_4:29402414-29402433 | None:intergenic | 20.0% |
| !! | TTGAACCTTAGAAAATATTT+AGG | - | chr1_4:29402536-29402555 | Msa0159260:intron | 20.0% |
| !!! | GAATTCCTAAATATTTTCTA+AGG | + | chr1_4:29402544-29402563 | None:intergenic | 20.0% |
| !!! | CACATCAATAATTTGTATAT+AGG | + | chr1_4:29402592-29402611 | None:intergenic | 20.0% |
| !! | ACAAATTATTGATGTGTTTA+AGG | - | chr1_4:29402596-29402615 | Msa0159260:intron | 20.0% |
| !! | GCAAAATATTAAATAGTTCA+AGG | - | chr1_4:29402738-29402757 | Msa0159260:intron | 20.0% |
| !!! | CATCTTTTTGAATTGTTATT+TGG | - | chr1_4:29402800-29402819 | Msa0159260:intron | 20.0% |
| !!! | TTTAGATTTTACTATTGTGA+AGG | - | chr1_4:29402990-29403009 | Msa0159260:intron | 20.0% |
| !!! | TCATTTTCCCAATATAAAAA+TGG | + | chr1_4:29403094-29403113 | None:intergenic | 20.0% |
| !!! | TTTTTATATTGGGAAAATGA+AGG | - | chr1_4:29403094-29403113 | Msa0159260:intron | 20.0% |
| !!! | TCAGTAAATTAATTTTTCGT+TGG | - | chr1_4:29403209-29403228 | Msa0159260:intron | 20.0% |
| !! | AAAATATATAACCATTTGGT+TGG | - | chr1_4:29403435-29403454 | Msa0159260:intron | 20.0% |
| !! | AGGGTTAATTACATAAAATA+TGG | - | chr1_4:29403693-29403712 | Msa0159260:intron | 20.0% |
| !! | TAAAGGTTGGATAAAATTTA+TGG | - | chr1_4:29403913-29403932 | Msa0159260:intron | 20.0% |
| ! | GCAAACACACATAAATAAAA+CGG | + | chr1_4:29392802-29392821 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGAACACCATTT+GGG | + | chr1_4:29392930-29392949 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTGAACACCATT+TGG | + | chr1_4:29392931-29392950 | None:intergenic | 25.0% |
| !!! | TCAACAAAAAATATTTTGGG+TGG | - | chr1_4:29392939-29392958 | Msa0159260:intron | 25.0% |
| !! | CTTTTAAATACATAGGTGTA+AGG | - | chr1_4:29393037-29393056 | Msa0159260:CDS | 25.0% |
| ! | TTCTTCAACAGATTTGATAT+TGG | + | chr1_4:29393102-29393121 | None:intergenic | 25.0% |
| !!! | ATTTTGTTAATTTGATGACG+TGG | + | chr1_4:29393382-29393401 | None:intergenic | 25.0% |
| ! | ACGTCATCAAATTAACAAAA+TGG | - | chr1_4:29393381-29393400 | Msa0159260:intron | 25.0% |
| ! | AAGGAAAAAAAAATTAACCC+AGG | - | chr1_4:29393618-29393637 | Msa0159260:intron | 25.0% |
| ! | AGGAAAAAAAAATTAACCCA+GGG | - | chr1_4:29393619-29393638 | Msa0159260:intron | 25.0% |
| ! | AAATGGAAAAGGAAGTTAAA+AGG | + | chr1_4:29393878-29393897 | None:intergenic | 25.0% |
| !! | CTAAAAATGTCTCCTAATTT+TGG | - | chr1_4:29394431-29394450 | Msa0159260:intron | 25.0% |
| ! | CACACTTGAACAAATTTAAA+GGG | - | chr1_4:29394539-29394558 | Msa0159260:CDS | 25.0% |
| !!! | ATTAATATCGCAAGGTTTTT+TGG | - | chr1_4:29394781-29394800 | Msa0159260:intron | 25.0% |
| !!! | GTTTTTTGGTCTTTCTTATT+TGG | - | chr1_4:29394795-29394814 | Msa0159260:intron | 25.0% |
| ! | TTCTTTATAACCTGGTAATT+GGG | + | chr1_4:29394907-29394926 | None:intergenic | 25.0% |
| ! | AATTACCAGGTTATAAAGAA+GGG | - | chr1_4:29394907-29394926 | Msa0159260:intron | 25.0% |
| !!! | TTTCAAGAAGATGATTTGTT+GGG | + | chr1_4:29394992-29395011 | None:intergenic | 25.0% |
| ! | AAAAAAATAAACCAAATGGG+TGG | - | chr1_4:29395227-29395246 | Msa0159260:CDS | 25.0% |
| ! | AAAATGATAGAAACAAAAGG+AGG | - | chr1_4:29395284-29395303 | Msa0159260:intron | 25.0% |
| ! | AAATGATAGAAACAAAAGGA+GGG | - | chr1_4:29395285-29395304 | Msa0159260:intron | 25.0% |
| !!! | ATATACGCGGTTTTAAAAAA+CGG | - | chr1_4:29395354-29395373 | Msa0159260:intron | 25.0% |
| !!! | TTTTGTTTACTCCGTAAAAA+CGG | + | chr1_4:29395432-29395451 | None:intergenic | 25.0% |
| !!! | GATATTTTTTGCAATTGAGA+TGG | - | chr1_4:29395538-29395557 | Msa0159260:CDS | 25.0% |
| ! | GTTTCTTAATTGGAAATATC+CGG | - | chr1_4:29396795-29396814 | Msa0159260:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | - | chr1_4:29397068-29397087 | Msa0159260:intron | 25.0% |
| ! | GTTAATTCTAGTGAGAAAAT+TGG | + | chr1_4:29397165-29397184 | None:intergenic | 25.0% |
| ! | CACACTTGAACAAATTTAAA+GGG | - | chr1_4:29394539-29394558 | Msa0159260:CDS | 25.0% |
| !! | ACATCAATCTTGAATGTTTT+AGG | + | chr1_4:29398146-29398165 | None:intergenic | 25.0% |
| ! | TTTATGTAATTAATCGTACC+GGG | + | chr1_4:29398181-29398200 | None:intergenic | 25.0% |
| ! | ATTCATAAAAGAATGCAAAG+TGG | - | chr1_4:29398417-29398436 | Msa0159260:CDS | 25.0% |
| ! | GTTTGTTCTATTGTTCTTTA+AGG | - | chr1_4:29398526-29398545 | Msa0159260:intron | 25.0% |
| ! | ACACAGATGTATATGTTTAT+AGG | + | chr1_4:29398614-29398633 | None:intergenic | 25.0% |
| !!! | CTGTGTTTTTTTTCTTTTTG+AGG | - | chr1_4:29398628-29398647 | Msa0159260:intron | 25.0% |
| !! | TTTTCCTCAATAGAAACAAA+AGG | - | chr1_4:29398772-29398791 | Msa0159260:intron | 25.0% |
| ! | CTATAATGGTACGAATTATT+AGG | + | chr1_4:29398804-29398823 | None:intergenic | 25.0% |
| ! | TATGTTGAAACAAATTGATC+TGG | + | chr1_4:29398912-29398931 | None:intergenic | 25.0% |
| ! | GAAACAAACATGAAACTTAA+AGG | + | chr1_4:29398947-29398966 | None:intergenic | 25.0% |
| !! | ATAGATCCTTTAAGTTTCTA+AGG | - | chr1_4:29398969-29398988 | Msa0159260:intron | 25.0% |
| ! | AAAACAAACTCGAAACTTAA+AGG | + | chr1_4:29399067-29399086 | None:intergenic | 25.0% |
| !!! | AAGTTTTTAAGGTTTCAGAT+AGG | + | chr1_4:29399236-29399255 | None:intergenic | 25.0% |
| ! | CTGAAACCTTAAAAACTTAA+AGG | - | chr1_4:29399238-29399257 | Msa0159260:intron | 25.0% |
| !!! | ATAGGTCCTTTAAGTTTTTA+AGG | + | chr1_4:29399247-29399266 | None:intergenic | 25.0% |
| !! | TCATACAATATAGTTTGTGT+TGG | + | chr1_4:29399409-29399428 | None:intergenic | 25.0% |
| !!! | CATAAATTTTGTTTGACTGT+TGG | + | chr1_4:29399544-29399563 | None:intergenic | 25.0% |
| ! | AATTGGGAAGTGAAAATATT+GGG | + | chr1_4:29399579-29399598 | None:intergenic | 25.0% |
| ! | TAATTGGGAAGTGAAAATAT+TGG | + | chr1_4:29399580-29399599 | None:intergenic | 25.0% |
| ! | AGTGGACAAATCAAATAATT+GGG | + | chr1_4:29399595-29399614 | None:intergenic | 25.0% |
| !! | TAGTGGACAAATCAAATAAT+TGG | + | chr1_4:29399596-29399615 | None:intergenic | 25.0% |
| ! | TTTCATTGGGAAATAATTAG+TGG | + | chr1_4:29399613-29399632 | None:intergenic | 25.0% |
| !!! | AGTATTAAAACATTTTGGCA+TGG | - | chr1_4:29399669-29399688 | Msa0159260:intron | 25.0% |
| ! | TATTTCTCCACATATTTCTT+GGG | + | chr1_4:29399950-29399969 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACATATTTCT+TGG | + | chr1_4:29399951-29399970 | None:intergenic | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | - | chr1_4:29399951-29399970 | Msa0159260:intron | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | - | chr1_4:29400014-29400033 | Msa0159260:intron | 25.0% |
| ! | AAGCTCAAATGATAACAAAT+GGG | - | chr1_4:29400278-29400297 | Msa0159260:intron | 25.0% |
| ! | GTCATTAAAACTTCAAAGAA+GGG | + | chr1_4:29400587-29400606 | None:intergenic | 25.0% |
| ! | TGTCATTAAAACTTCAAAGA+AGG | + | chr1_4:29400588-29400607 | None:intergenic | 25.0% |
| ! | TCATACTTGAACAAATTTGA+AGG | - | chr1_4:29400746-29400765 | Msa0159260:CDS | 25.0% |
| ! | CATACTTGAACAAATTTGAA+GGG | - | chr1_4:29400747-29400766 | Msa0159260:CDS | 25.0% |
| ! | GTTATGGATCAAAGAAATTA+AGG | + | chr1_4:29401272-29401291 | None:intergenic | 25.0% |
| ! | AATTTCTTTGATCCATAACA+AGG | - | chr1_4:29401273-29401292 | Msa0159260:intron | 25.0% |
| ! | TCTTCTTTATAACCTTGTTA+TGG | + | chr1_4:29401288-29401307 | None:intergenic | 25.0% |
| ! | GTCATGGATCAAAAAATTTA+AGG | + | chr1_4:29401429-29401448 | None:intergenic | 25.0% |
| !!! | AAATTTTTTGATCCATGACA+AGG | - | chr1_4:29401430-29401449 | Msa0159260:intron | 25.0% |
| !! | ATGATCATGATATTCTAAAG+AGG | - | chr1_4:29401666-29401685 | Msa0159260:intron | 25.0% |
| ! | ACTTCTTTATAACCTTGTAA+GGG | + | chr1_4:29401826-29401845 | None:intergenic | 25.0% |
| ! | AACTTCTTTATAACCTTGTA+AGG | + | chr1_4:29401827-29401846 | None:intergenic | 25.0% |
| ! | AAGTTTGAAGATTATACCAT+GGG | + | chr1_4:29402236-29402255 | None:intergenic | 25.0% |
| ! | AAAGTTTGAAGATTATACCA+TGG | + | chr1_4:29402237-29402256 | None:intergenic | 25.0% |
| !!! | ACATTTTTTTAGGGAGTTTA+AGG | + | chr1_4:29402429-29402448 | None:intergenic | 25.0% |
| ! | CATAAATAATAACTGAACAC+TGG | + | chr1_4:29402566-29402585 | None:intergenic | 25.0% |
| ! | CAGTGTTCAGTTATTATTTA+TGG | - | chr1_4:29402564-29402583 | Msa0159260:intron | 25.0% |
| !! | ATTTTGTGTGTAGAATCAAA+GGG | - | chr1_4:29403613-29403632 | Msa0159260:intron | 25.0% |
| !! | TTTTATGTAATTAACCCTAC+CGG | + | chr1_4:29403691-29403710 | None:intergenic | 25.0% |
| ! | AAAAATTGTGGAGTTGAAAA+TGG | - | chr1_4:29403829-29403848 | Msa0159260:CDS | 25.0% |
| ! | AAAATTGTGGAGTTGAAAAT+GGG | - | chr1_4:29403830-29403849 | Msa0159260:CDS | 25.0% |
| ! | ATTTATTATCCTAGTATTCG+TGG | - | chr1_4:29403878-29403897 | Msa0159260:intron | 25.0% |
| TATTTCTCCACATACTTCTT+GGG | + | chr1_4:29392871-29392890 | None:intergenic | 30.0% | |
| ATATTTCTCCACATACTTCT+TGG | + | chr1_4:29392872-29392891 | None:intergenic | 30.0% | |
| ! | AGAAGTATGTGGAGAAATAT+TGG | - | chr1_4:29392872-29392891 | Msa0159260:CDS | 30.0% |
| TTTGGGAATTCAAGGAATAT+CGG | + | chr1_4:29392913-29392932 | None:intergenic | 30.0% | |
| ATATTCCTTGAATTCCCAAA+TGG | - | chr1_4:29392913-29392932 | Msa0159260:intron | 30.0% | |
| AGGTGTAAGGTTAAGATATT+TGG | - | chr1_4:29393050-29393069 | Msa0159260:CDS | 30.0% | |
| GCTCAAAAGACAAGAAAATA+TGG | - | chr1_4:29393212-29393231 | Msa0159260:intron | 30.0% | |
| GAAAATATGGCAAGAGAAAA+AGG | - | chr1_4:29393225-29393244 | Msa0159260:intron | 30.0% | |
| GGAAAAAAAAATTAACCCAG+GGG | - | chr1_4:29393620-29393639 | Msa0159260:intron | 30.0% | |
| !! | CTAATTTTTCTCTGGCTTAA+TGG | + | chr1_4:29393814-29393833 | None:intergenic | 30.0% |
| ! | AATCCACACTAATTTTTCTC+TGG | + | chr1_4:29393822-29393841 | None:intergenic | 30.0% |
| GAGAAAAATTAGTGTGGATT+TGG | - | chr1_4:29393822-29393841 | Msa0159260:intron | 30.0% | |
| AAACAAACGTGAAATGGAAA+AGG | + | chr1_4:29393889-29393908 | None:intergenic | 30.0% | |
| AGTACAAAACAAACGTGAAA+TGG | + | chr1_4:29393895-29393914 | None:intergenic | 30.0% | |
| ATAACATGCATAAATTGGGA+AGG | - | chr1_4:29394121-29394140 | Msa0159260:intron | 30.0% | |
| !! | TAGCAAATGAACTCTAAAAC+TGG | - | chr1_4:29394222-29394241 | Msa0159260:intron | 30.0% |
| TGATGAGTATATTACTTTGC+AGG | - | chr1_4:29394255-29394274 | Msa0159260:intron | 30.0% | |
| TCATCTGTTTCAATTCATCA+TGG | + | chr1_4:29394498-29394517 | None:intergenic | 30.0% | |
| ! | TGATACCAAGTGATTTTTCA+AGG | - | chr1_4:29394515-29394534 | Msa0159260:CDS | 30.0% |
| !! | GATACCAAGTGATTTTTCAA+GGG | - | chr1_4:29394516-29394535 | Msa0159260:CDS | 30.0% |
| GCACACTTGAACAAATTTAA+AGG | - | chr1_4:29394538-29394557 | Msa0159260:CDS | 30.0% | |
| CTTCTTTATAACCTGGTAAT+TGG | + | chr1_4:29394908-29394927 | None:intergenic | 30.0% | |
| CAATTACCAGGTTATAAAGA+AGG | - | chr1_4:29394906-29394925 | Msa0159260:intron | 30.0% | |
| ! | CTTTCAAGAAGATGATTTGT+TGG | + | chr1_4:29394993-29395012 | None:intergenic | 30.0% |
| AATGATAGAAACAAAAGGAG+GGG | - | chr1_4:29395286-29395305 | Msa0159260:intron | 30.0% | |
| !!! | TCATAAACGGCAATTTTTTG+CGG | + | chr1_4:29395500-29395519 | None:intergenic | 30.0% |
| TCTATGTCTGTTGTCATAAA+CGG | + | chr1_4:29395513-29395532 | None:intergenic | 30.0% | |
| !! | TTGGAGTTCTAAACTAGATA+AGG | + | chr1_4:29395617-29395636 | None:intergenic | 30.0% |
| TGATGAGTATATTACTTTGC+AGG | - | chr1_4:29394255-29394274 | Msa0159260:intron | 30.0% | |
| AGTATATTACTTTGCAGGTA+GGG | - | chr1_4:29395917-29395936 | Msa0159260:CDS | 30.0% | |
| ATTATACCGAACGAAATTAC+TGG | - | chr1_4:29396205-29396224 | Msa0159260:intron | 30.0% | |
| TTATACCGAACGAAATTACT+GGG | - | chr1_4:29396206-29396225 | Msa0159260:intron | 30.0% | |
| ATTATACCGAACGAAATTAC+TGG | - | chr1_4:29396205-29396224 | Msa0159260:intron | 30.0% | |
| TTATACCGAACGAAATTACT+GGG | - | chr1_4:29396206-29396225 | Msa0159260:intron | 30.0% | |
| TATACTCGTAACAGTGATTT+GGG | + | chr1_4:29396416-29396435 | None:intergenic | 30.0% | |
| GAGAATTACACCTCAAAATA+TGG | - | chr1_4:29396459-29396478 | Msa0159260:CDS | 30.0% | |
| ! | AACGATTGAACCATATTTTG+AGG | + | chr1_4:29396472-29396491 | None:intergenic | 30.0% |
| AATGATTCGTTAACACGAAT+CGG | - | chr1_4:29396568-29396587 | Msa0159260:CDS | 30.0% | |
| !!! | AACGCGTTTTGTTTCTTAAT+TGG | - | chr1_4:29396785-29396804 | Msa0159260:intron | 30.0% |
| TAAGTGTTTATATAAGGGTG+GGG | + | chr1_4:29397061-29397080 | None:intergenic | 30.0% | |
| GTAAGTGTTTATATAAGGGT+GGG | + | chr1_4:29397062-29397081 | None:intergenic | 30.0% | |
| AGTAAGTGTTTATATAAGGG+TGG | + | chr1_4:29397063-29397082 | None:intergenic | 30.0% | |
| TGTGCTCTTGAAAAATTACT+TGG | + | chr1_4:29397220-29397239 | None:intergenic | 30.0% | |
| GCACACTTGAACAAATTTAA+AGG | - | chr1_4:29394538-29394557 | Msa0159260:CDS | 30.0% | |
| TTCCTTATAACCTGGTAATT+GGG | + | chr1_4:29397608-29397627 | None:intergenic | 30.0% | |
| AATTACCAGGTTATAAGGAA+GGG | - | chr1_4:29397608-29397627 | Msa0159260:intron | 30.0% | |
| ! | ATCATTTCAAAGTTCTAGCT+AGG | - | chr1_4:29397899-29397918 | Msa0159260:intron | 30.0% |
| ! | TCATTTCAAAGTTCTAGCTA+GGG | - | chr1_4:29397900-29397919 | Msa0159260:intron | 30.0% |
| TGATGTGTATTCAAAATACC+CGG | - | chr1_4:29398160-29398179 | Msa0159260:intron | 30.0% | |
| ATATTTGCAGAATGTTCCAA+AGG | - | chr1_4:29398270-29398289 | Msa0159260:CDS | 30.0% | |
| ACGATAGTATTCATGGTTAT+AGG | - | chr1_4:29398374-29398393 | Msa0159260:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+TGG | - | chr1_4:29398487-29398506 | Msa0159260:intron | 30.0% | |
| ACAATAGAACAAACAGCTAA+GGG | + | chr1_4:29398520-29398539 | None:intergenic | 30.0% | |
| AACAATAGAACAAACAGCTA+AGG | + | chr1_4:29398521-29398540 | None:intergenic | 30.0% | |
| TCCAGACCATTTATGAAATA+TGG | - | chr1_4:29398717-29398736 | Msa0159260:intron | 30.0% | |
| TCCATATTTCATAAATGGTC+TGG | + | chr1_4:29398721-29398740 | None:intergenic | 30.0% | |
| !!! | CAAACCTTTTGTTTCTATTG+AGG | + | chr1_4:29398779-29398798 | None:intergenic | 30.0% |
| CAAATCAGGTAAATGTGATA+TGG | + | chr1_4:29398841-29398860 | None:intergenic | 30.0% | |
| CATATCACATTTACCTGATT+TGG | - | chr1_4:29398839-29398858 | Msa0159260:intron | 30.0% | |
| AAACATGAAACTTAAAGGAC+CGG | + | chr1_4:29398942-29398961 | None:intergenic | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr1_4:29398978-29398997 | None:intergenic | 30.0% | |
| !! | CTTTAAGTTTCTAAGGTTTC+AGG | - | chr1_4:29398976-29398995 | Msa0159260:intron | 30.0% |
| ! | TCAAATCAACTTTGGCTTAA+CGG | + | chr1_4:29399113-29399132 | None:intergenic | 30.0% |
| CCTTTCTATCAAATCAACTT+TGG | + | chr1_4:29399121-29399140 | None:intergenic | 30.0% | |
| !! | CCAAAGTTGATTTGATAGAA+AGG | - | chr1_4:29399118-29399137 | Msa0159260:intron | 30.0% |
| GAAACAAACTCGAAACTTAA+AGG | - | chr1_4:29399149-29399168 | Msa0159260:intron | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr1_4:29399176-29399195 | None:intergenic | 30.0% |
| ! | ATATGTCCTTCAAGTTTCTA+AGG | + | chr1_4:29399187-29399206 | None:intergenic | 30.0% |
| ! | TTTAAGCTTCGAGTTTGTTT+CGG | + | chr1_4:29399210-29399229 | None:intergenic | 30.0% |
| GAAACAAACGTGAAACTTAA+AGG | - | chr1_4:29399269-29399288 | Msa0159260:intron | 30.0% | |
| CATAGTCTAGTTGGATAATT+TGG | + | chr1_4:29399491-29399510 | None:intergenic | 30.0% | |
| AATTATCCAACTAGACTATG+AGG | - | chr1_4:29399491-29399510 | Msa0159260:intron | 30.0% | |
| ATTATCCAACTAGACTATGA+GGG | - | chr1_4:29399492-29399511 | Msa0159260:intron | 30.0% | |
| GAAGTGAAAATATTGGGATA+TGG | + | chr1_4:29399573-29399592 | None:intergenic | 30.0% | |
| GACTATTGAATGAATACTGA+TGG | + | chr1_4:29399646-29399665 | None:intergenic | 30.0% | |
| AAGTGTCTATAGAGTCATAT+AGG | + | chr1_4:29399707-29399726 | None:intergenic | 30.0% | |
| TTCTCTGCAACAAAGAAATT+CGG | + | chr1_4:29399925-29399944 | None:intergenic | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1_4:29392877-29392896 | Msa0159260:CDS | 30.0% | |
| ATTTCTTGTTGAACACCATT+TGG | + | chr1_4:29400010-29400029 | None:intergenic | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | - | chr1_4:29400018-29400037 | Msa0159260:intron | 30.0% |
| !! | ATATTTTGGGTGGAGAATAA+TGG | - | chr1_4:29400028-29400047 | Msa0159260:intron | 30.0% |
| TGGAGAATAATGGTGATATT+TGG | - | chr1_4:29400038-29400057 | Msa0159260:intron | 30.0% | |
| TTTGCAAAGTCTCTCAAATA+TGG | - | chr1_4:29400082-29400101 | Msa0159260:intron | 30.0% | |
| ! | TATTGGTGGATCATATTTCA+AGG | - | chr1_4:29400126-29400145 | Msa0159260:intron | 30.0% |
| GAAGCTCAAATGATAACAAA+TGG | - | chr1_4:29400277-29400296 | Msa0159260:intron | 30.0% | |
| !! | TAACAAATGAACTCTAAAGC+AGG | - | chr1_4:29400479-29400498 | Msa0159260:intron | 30.0% |
| AAAGAAGGGATTCTCATTAT+TGG | + | chr1_4:29400573-29400592 | None:intergenic | 30.0% | |
| TGTGGTTCATGAATTGAAAT+AGG | - | chr1_4:29400700-29400719 | Msa0159260:CDS | 30.0% | |
| TATGATCTTGAAAAGTTGCA+TGG | + | chr1_4:29400731-29400750 | None:intergenic | 30.0% | |
| TCTTCTAATTCTATGACTAC+TGG | - | chr1_4:29400836-29400855 | Msa0159260:intron | 30.0% | |
| TACTATTACTAAAGCCATCA+AGG | - | chr1_4:29400949-29400968 | Msa0159260:intron | 30.0% | |
| ACTATTACTAAAGCCATCAA+GGG | - | chr1_4:29400950-29400969 | Msa0159260:intron | 30.0% | |
| AAAAACCTTGCAACTTCTTA+GGG | + | chr1_4:29400982-29401001 | None:intergenic | 30.0% | |
| AAAAAACCTTGCAACTTCTT+AGG | + | chr1_4:29400983-29401002 | None:intergenic | 30.0% | |
| TGTCATGGATCAAAGAAAAT+AGG | + | chr1_4:29401082-29401101 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTGATCCATGACA+AGG | - | chr1_4:29401082-29401101 | Msa0159260:intron | 30.0% |
| CATGACAAGGTTATAAAGAA+GGG | - | chr1_4:29401095-29401114 | Msa0159260:intron | 30.0% | |
| AGTTAGAAAAATACCCTGAA+GGG | + | chr1_4:29401197-29401216 | None:intergenic | 30.0% | |
| AAGTTAGAAAAATACCCTGA+AGG | + | chr1_4:29401198-29401217 | None:intergenic | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | - | chr1_4:29401095-29401114 | Msa0159260:intron | 30.0% | |
| TATAAAGAAGGGATCTCTTA+TGG | - | chr1_4:29401454-29401473 | Msa0159260:intron | 30.0% | |
| !! | GTGATAAAGATGTTCTAAAG+AGG | - | chr1_4:29401476-29401495 | Msa0159260:intron | 30.0% |
| GTCATGGATCAAAGAAATTA+AGG | + | chr1_4:29401619-29401638 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | - | chr1_4:29401620-29401639 | Msa0159260:intron | 30.0% | |
| CATGACAAGGTTATAAAGAA+GGG | - | chr1_4:29401095-29401114 | Msa0159260:intron | 30.0% | |
| ! | ATTCTAAAGAGGAAAGACAT+TGG | - | chr1_4:29401677-29401696 | Msa0159260:intron | 30.0% |
| GTAAGGGATCAAAGAAATTA+AGG | + | chr1_4:29401810-29401829 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCCTTACA+AGG | - | chr1_4:29401811-29401830 | Msa0159260:intron | 30.0% | |
| AAGAATTTAGAAGAATACCC+TGG | + | chr1_4:29401930-29401949 | None:intergenic | 30.0% | |
| GTCATGGATCAAAGAAATTA+AGG | + | chr1_4:29401619-29401638 | None:intergenic | 30.0% | |
| AATTTCTTTGATCCATGACA+AGG | - | chr1_4:29401620-29401639 | Msa0159260:intron | 30.0% | |
| CTTTCTTTATAACCTTGACA+TGG | + | chr1_4:29402856-29402875 | None:intergenic | 30.0% | |
| CATGTCAAGGTTATAAAGAA+AGG | - | chr1_4:29402854-29402873 | Msa0159260:intron | 30.0% | |
| AATCTAAAGAGGAAATTCGT+TGG | - | chr1_4:29402898-29402917 | Msa0159260:intron | 30.0% | |
| ! | TCTCAAGTGTCAATTTTTGT+AGG | - | chr1_4:29403494-29403513 | Msa0159260:CDS | 30.0% |
| ! | TCTCAAGTGTCAATTTTTGT+AGG | - | chr1_4:29403494-29403513 | Msa0159260:CDS | 30.0% |
| ! | CATTTTGTGTGTAGAATCAA+AGG | - | chr1_4:29403612-29403631 | Msa0159260:intron | 30.0% |
| GATGAAACACAATACATTCA+AGG | - | chr1_4:29403645-29403664 | Msa0159260:intron | 30.0% | |
| ! | ACACAATACATTCAAGGTTT+TGG | - | chr1_4:29403651-29403670 | Msa0159260:intron | 30.0% |
| TTTATGTAATTAACCCTACC+GGG | + | chr1_4:29403690-29403709 | None:intergenic | 30.0% | |
| AAATTGTGGAGTTGAAAATG+GGG | - | chr1_4:29403831-29403850 | Msa0159260:CDS | 30.0% | |
| ATTTATGGAAGAAAGCAAAG+TGG | - | chr1_4:29403928-29403947 | Msa0159260:intron | 30.0% | |
| ! | TGTGTTTAAAGTTTCCATTG+TGG | - | chr1_4:29403997-29404016 | Msa0159260:CDS | 30.0% |
| ! | GTGTTTAAAGTTTCCATTGT+GGG | - | chr1_4:29403998-29404017 | Msa0159260:CDS | 30.0% |
| !! | TTCTGAAATTCTTGTTGCAG+AGG | - | chr1_4:29392842-29392861 | Msa0159260:CDS | 35.0% |
| TTGGGAATTCAAGGAATATC+GGG | + | chr1_4:29392912-29392931 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | - | chr1_4:29392949-29392968 | Msa0159260:intron | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | - | chr1_4:29392959-29392978 | Msa0159260:intron | 35.0% | |
| GCTACAGAAAAAGCTAAAGA+AGG | - | chr1_4:29393131-29393150 | Msa0159260:intron | 35.0% | |
| AATAGGCGGCGTTTAAAAAT+TGG | - | chr1_4:29393273-29393292 | Msa0159260:intron | 35.0% | |
| !!! | AAATTAACCCAGGGGTATTT+TGG | - | chr1_4:29393628-29393647 | Msa0159260:intron | 35.0% |
| AATAGGCGGCGTTTAAAAAT+TGG | + | chr1_4:29393273-29393292 | None:intergenic | 35.0% | |
| AAGCCAGAGAAAAATTAGTG+TGG | - | chr1_4:29393816-29393835 | Msa0159260:intron | 35.0% | |
| TGAGTATATTACTTTGCAGG+TGG | - | chr1_4:29394258-29394277 | Msa0159260:intron | 35.0% | |
| GAGTATATTACTTTGCAGGT+GGG | - | chr1_4:29394259-29394278 | Msa0159260:intron | 35.0% | |
| AGTATATTACTTTGCAGGTG+GGG | - | chr1_4:29394260-29394279 | Msa0159260:intron | 35.0% | |
| GTTGAAGTTGTTAAAGAGAG+TGG | - | chr1_4:29394331-29394350 | Msa0159260:intron | 35.0% | |
| GGCAATGTGACATCAAAAAA+GGG | + | chr1_4:29394370-29394389 | None:intergenic | 35.0% | |
| TGGCAATGTGACATCAAAAA+AGG | + | chr1_4:29394371-29394390 | None:intergenic | 35.0% | |
| !!! | AGAAGATCTGTTTTGACTAC+TGG | - | chr1_4:29394628-29394647 | Msa0159260:intron | 35.0% |
| ATAGTAACGGTGAATGAAAC+TGG | + | chr1_4:29394728-29394747 | None:intergenic | 35.0% | |
| CCTTGATGGAGTAATAGTAA+CGG | + | chr1_4:29394741-29394760 | None:intergenic | 35.0% | |
| CGTTACTATTACTCCATCAA+GGG | - | chr1_4:29394739-29394758 | Msa0159260:intron | 35.0% | |
| GGGATCAAAGAAAAAGAAGT+TGG | + | chr1_4:29394887-29394906 | None:intergenic | 35.0% | |
| TTTCTTTGATCCCAATTACC+AGG | - | chr1_4:29394894-29394913 | Msa0159260:intron | 35.0% | |
| TGGTGATAATCCAAAGAGAA+AGG | - | chr1_4:29394941-29394960 | Msa0159260:intron | 35.0% | |
| GGTGATAATCCAAAGAGAAA+GGG | - | chr1_4:29394942-29394961 | Msa0159260:intron | 35.0% | |
| CCTTTAAATCCCTTTCTCTT+TGG | + | chr1_4:29394954-29394973 | None:intergenic | 35.0% | |
| CCAAAGAGAAAGGGATTTAA+AGG | - | chr1_4:29394951-29394970 | Msa0159260:intron | 35.0% | |
| AGGGATTTAAAGGAACTTCT+AGG | - | chr1_4:29394961-29394980 | Msa0159260:intron | 35.0% | |
| ATGATAGAAACAAAAGGAGG+GGG | - | chr1_4:29395287-29395306 | Msa0159260:intron | 35.0% | |
| !!! | TTTGTCGCGGCTTTTTTTAT+CGG | + | chr1_4:29395387-29395406 | None:intergenic | 35.0% |
| ! | CTACCTATAACTTTTTGTCG+CGG | + | chr1_4:29395400-29395419 | None:intergenic | 35.0% |
| TTACTCCGTAAAAACGGTAA+CGG | + | chr1_4:29395426-29395445 | None:intergenic | 35.0% | |
| ATGACAACAGACATAGAATC+TGG | - | chr1_4:29395516-29395535 | Msa0159260:CDS | 35.0% | |
| !! | TTGCAAACGAACTCTAAAGT+AGG | - | chr1_4:29395879-29395898 | Msa0159260:CDS | 35.0% |
| GAGTATATTACTTTGCAGGT+AGG | - | chr1_4:29394259-29394278 | Msa0159260:intron | 35.0% | |
| CTCTCATTAACAACTTCAAC+TGG | + | chr1_4:29395981-29396000 | None:intergenic | 35.0% | |
| TTGTCAAAATCTTACGTCCA+TGG | - | chr1_4:29396035-29396054 | Msa0159260:intron | 35.0% | |
| GTATACTCGTAACAGTGATT+TGG | + | chr1_4:29396417-29396436 | None:intergenic | 35.0% | |
| ! | ATTTGGTGAGAAGAATGAGT+GGG | - | chr1_4:29396632-29396651 | Msa0159260:CDS | 35.0% |
| TTACGAACTCTGCCTATAAA+AGG | + | chr1_4:29396667-29396686 | None:intergenic | 35.0% | |
| AAACAAAACGCGTTTGCTTA+AGG | + | chr1_4:29396779-29396798 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTCAACCCAAGCC+CGG | - | chr1_4:29396938-29396957 | Msa0159260:intron | 35.0% |
| GTTCACCCTTTCTCAAAAAT+GGG | - | chr1_4:29397007-29397026 | Msa0159260:intron | 35.0% | |
| GACTTAAAAATGTCCCACAT+TGG | + | chr1_4:29397101-29397120 | None:intergenic | 35.0% | |
| ACTATGAGAAACTAGTGTGT+GGG | + | chr1_4:29397129-29397148 | None:intergenic | 35.0% | |
| GTTCCAACATGAATTGAAAC+AGG | - | chr1_4:29397189-29397208 | Msa0159260:intron | 35.0% | |
| TCACCTGTTTCAATTCATGT+TGG | + | chr1_4:29397195-29397214 | None:intergenic | 35.0% | |
| ACTCACAAGAGATCTTCTAT+CGG | + | chr1_4:29397323-29397342 | None:intergenic | 35.0% | |
| ATAGTAACGGTGAATGAAAG+TGG | + | chr1_4:29397431-29397450 | None:intergenic | 35.0% | |
| CCTTGATGGAGTAATAGTAA+CGG | + | chr1_4:29394741-29394760 | None:intergenic | 35.0% | |
| CGTTACTATTACTCCATCAA+GGG | - | chr1_4:29394739-29394758 | Msa0159260:intron | 35.0% | |
| ATTCTTTGATCCCAATTACC+AGG | - | chr1_4:29397595-29397614 | Msa0159260:intron | 35.0% | |
| ATCCCAATTACCAGGTTATA+AGG | - | chr1_4:29394902-29394921 | Msa0159260:intron | 35.0% | |
| CTTCCTTATAACCTGGTAAT+TGG | + | chr1_4:29397609-29397628 | None:intergenic | 35.0% | |
| CAATTACCAGGTTATAAGGA+AGG | - | chr1_4:29397607-29397626 | Msa0159260:intron | 35.0% | |
| TGAATTATCACCACAAGAAG+AGG | + | chr1_4:29397635-29397654 | None:intergenic | 35.0% | |
| ACATTATCACCTTCTGAATC+TGG | + | chr1_4:29398116-29398135 | None:intergenic | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1_4:29398289-29398308 | None:intergenic | 35.0% |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1_4:29398286-29398305 | Msa0159260:CDS | 35.0% | |
| ATTCATGGTTATAGGTTCTC+TGG | - | chr1_4:29398382-29398401 | Msa0159260:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | - | chr1_4:29398424-29398443 | Msa0159260:intron | 35.0% | |
| CAATAGAACAAACAGCTAAG+GGG | + | chr1_4:29398519-29398538 | None:intergenic | 35.0% | |
| CACTCAAATTTCACCAAATC+AGG | + | chr1_4:29398855-29398874 | None:intergenic | 35.0% | |
| ! | GAGTGTTGTCTATTCAAAGT+TGG | - | chr1_4:29398870-29398889 | Msa0159260:intron | 35.0% |
| !! | AAGTTTCTAAGGTTTCAGGT+AGG | - | chr1_4:29398980-29398999 | Msa0159260:intron | 35.0% |
| ! | GTTTGAAGTTTGTTTCGGAT+AGG | - | chr1_4:29399011-29399030 | Msa0159260:intron | 35.0% |
| !! | CTTAACGGAAGTTGATAGAA+AGG | + | chr1_4:29399098-29399117 | None:intergenic | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr1_4:29399145-29399164 | None:intergenic | 35.0% |
| CTGAAACCTTAGAAACTTGA+AGG | - | chr1_4:29399178-29399197 | Msa0159260:intron | 35.0% | |
| GAAACAAACTCGAAGCTTAA+AGG | - | chr1_4:29399209-29399228 | Msa0159260:intron | 35.0% | |
| GTTTCACGTTTGTTTCAGAT+AGG | + | chr1_4:29399265-29399284 | None:intergenic | 35.0% | |
| AAAGGACCAAGGGAAATATT+TGG | - | chr1_4:29399287-29399306 | Msa0159260:intron | 35.0% | |
| TTATGGCCAAATATTTCCCT+TGG | + | chr1_4:29399296-29399315 | None:intergenic | 35.0% | |
| ! | TTTGTGTTGGTGTGTATGTT+CGG | + | chr1_4:29399396-29399415 | None:intergenic | 35.0% |
| TTTCCCAATGAAATACACAC+CGG | - | chr1_4:29399620-29399639 | Msa0159260:intron | 35.0% | |
| ATTGAATGAATACTGATGGC+CGG | + | chr1_4:29399642-29399661 | None:intergenic | 35.0% | |
| CATGAAGAGATTAGAAACAG+TGG | + | chr1_4:29399744-29399763 | None:intergenic | 35.0% | |
| GAGAATTCCCAAGAAATATG+TGG | - | chr1_4:29399940-29399959 | Msa0159260:intron | 35.0% | |
| TTTGGTATTTCACTCTCATC+AGG | + | chr1_4:29400256-29400275 | None:intergenic | 35.0% | |
| TGATGAGAGTGAAATACCAA+AGG | - | chr1_4:29400255-29400274 | Msa0159260:intron | 35.0% | |
| GTTATCATTTGAGCTTCCTT+TGG | + | chr1_4:29400274-29400293 | None:intergenic | 35.0% | |
| ACTCTTAAGCAAAAATTCCC+AGG | - | chr1_4:29400328-29400347 | Msa0159260:intron | 35.0% | |
| ATCAAATGAAGTTCTCACCT+GGG | + | chr1_4:29400348-29400367 | None:intergenic | 35.0% | |
| AATCAAATGAAGTTCTCACC+TGG | + | chr1_4:29400349-29400368 | None:intergenic | 35.0% | |
| !! | AAATGAACTCTAAAGCAGGT+AGG | - | chr1_4:29400483-29400502 | Msa0159260:intron | 35.0% |
| ACTTACCAAGATATGACCAT+GGG | + | chr1_4:29400621-29400640 | None:intergenic | 35.0% | |
| TACTTACCAAGATATGACCA+TGG | + | chr1_4:29400622-29400641 | None:intergenic | 35.0% | |
| CTAATTCTATGACTACTGGT+TGG | - | chr1_4:29400840-29400859 | Msa0159260:intron | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | + | chr1_4:29401097-29401116 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | - | chr1_4:29401094-29401113 | Msa0159260:intron | 35.0% | |
| TATAAAGAAGGGATCTCTTC+TGG | - | chr1_4:29401106-29401125 | Msa0159260:intron | 35.0% | |
| ! | GTGATCGTGATATTCTAAAG+AGG | - | chr1_4:29401128-29401147 | Msa0159260:intron | 35.0% |
| ! | GTGATCGTGATATTCTAAAG+TGG | - | chr1_4:29401128-29401147 | Msa0159260:intron | 35.0% |
| CCTTCTTTATAACCTTGTCA+TGG | + | chr1_4:29401097-29401116 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | - | chr1_4:29401094-29401113 | Msa0159260:intron | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | + | chr1_4:29401097-29401116 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | - | chr1_4:29401094-29401113 | Msa0159260:intron | 35.0% | |
| AAGACATTGGAGAAACTTGT+AGG | - | chr1_4:29401690-29401709 | Msa0159260:intron | 35.0% | |
| CCTTCTTTATAACCTTGTCA+TGG | + | chr1_4:29401097-29401116 | None:intergenic | 35.0% | |
| CCATGACAAGGTTATAAAGA+AGG | - | chr1_4:29401094-29401113 | Msa0159260:intron | 35.0% | |
| AAGACATTGGAGAAACATCT+AGG | - | chr1_4:29402188-29402207 | Msa0159260:intron | 35.0% | |
| GACATGGATCAAAGAAATCA+AGG | + | chr1_4:29402840-29402859 | None:intergenic | 35.0% | |
| GATTTCTTTGATCCATGTCA+AGG | - | chr1_4:29402841-29402860 | Msa0159260:intron | 35.0% | |
| AATTCGTTGGAGAATCTTGT+AGG | - | chr1_4:29402911-29402930 | Msa0159260:intron | 35.0% | |
| TTTGGTAAATTCCAAACACC+CGG | - | chr1_4:29403669-29403688 | Msa0159260:intron | 35.0% | |
| CCTCTTTCCATAAATCTCTT+TGG | + | chr1_4:29403800-29403819 | None:intergenic | 35.0% | |
| CCAAAGAGATTTATGGAAAG+AGG | - | chr1_4:29403797-29403816 | Msa0159260:CDS | 35.0% | |
| AGGATGTCGTGAAAAAATTG+TGG | - | chr1_4:29403817-29403836 | Msa0159260:CDS | 35.0% | |
| AATTGTGGAGTTGAAAATGG+GGG | - | chr1_4:29403832-29403851 | Msa0159260:CDS | 35.0% | |
| GAAGAAAGCAAAGTGGAAAT+TGG | - | chr1_4:29403935-29403954 | Msa0159260:intron | 35.0% | |
| GAACACCATTTGGGAATTCA+AGG | + | chr1_4:29392921-29392940 | None:intergenic | 40.0% | |
| AAAGAAGGAGTTGAAGTGAG+TGG | - | chr1_4:29393146-29393165 | Msa0159260:intron | 40.0% | |
| ! | CTTGTCTTTTGAGCTTGAGT+AGG | + | chr1_4:29393206-29393225 | None:intergenic | 40.0% |
| GGCAAGAGAAAAAGGCTTAA+TGG | - | chr1_4:29393233-29393252 | Msa0159260:intron | 40.0% | |
| TGCTAGGATTAACGATTGCA+AGG | + | chr1_4:29393300-29393319 | None:intergenic | 40.0% | |
| CGAATTGACGAAAATACTCC+TGG | - | chr1_4:29393408-29393427 | Msa0159260:intron | 40.0% | |
| GAATTGACCAAAATACCCCT+GGG | + | chr1_4:29393638-29393657 | None:intergenic | 40.0% | |
| CCAGATTAGCAAAATGGCAT+GGG | + | chr1_4:29393660-29393679 | None:intergenic | 40.0% | |
| ACCAGATTAGCAAAATGGCA+TGG | + | chr1_4:29393661-29393680 | None:intergenic | 40.0% | |
| ACGTCACCAGATTAGCAAAA+TGG | + | chr1_4:29393666-29393685 | None:intergenic | 40.0% | |
| !! | ATTTTGCTAATCTGGTGACG+TGG | - | chr1_4:29393665-29393684 | Msa0159260:intron | 40.0% |
| !! | GCAGTGATTAAGTTGGTCAA+AGG | - | chr1_4:29393687-29393706 | Msa0159260:intron | 40.0% |
| ! | AAGGACTCACCTGAGAATTT+TGG | + | chr1_4:29393859-29393878 | None:intergenic | 40.0% |
| GGCATGGTTAAGACTTAAGA+AGG | - | chr1_4:29394291-29394310 | Msa0159260:intron | 40.0% | |
| TGTGCCCTTGAAAAATCACT+TGG | + | chr1_4:29394523-29394542 | None:intergenic | 40.0% | |
| GGGATAGCAAACTTAAGAGT+TGG | - | chr1_4:29394559-29394578 | Msa0159260:intron | 40.0% | |
| !! | AGCAAACTTAAGAGTTGGTG+AGG | - | chr1_4:29394564-29394583 | Msa0159260:intron | 40.0% |
| !!! | GATCTGTTTTGACTACTGGT+TGG | - | chr1_4:29394632-29394651 | Msa0159260:intron | 40.0% |
| CCGTTACTATTACTCCATCA+AGG | - | chr1_4:29394738-29394757 | Msa0159260:intron | 40.0% | |
| TGGATTATCACCACAAGAAG+AGG | + | chr1_4:29394934-29394953 | None:intergenic | 40.0% | |
| !!! | GCGGCTTTTTTTATCGGTAA+CGG | + | chr1_4:29395381-29395400 | None:intergenic | 40.0% |
| AAGCCGCGACAAAAAGTTAT+AGG | - | chr1_4:29395394-29395413 | Msa0159260:intron | 40.0% | |
| !! | AGTGACCGTTACCGTTTTTA+CGG | - | chr1_4:29395418-29395437 | Msa0159260:intron | 40.0% |
| CGTATAGGATTTCCCGATTT+CGG | + | chr1_4:29395752-29395771 | None:intergenic | 40.0% | |
| TAACCAACATATTGCTGCCA+TGG | + | chr1_4:29396055-29396074 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr1_4:29396214-29396233 | None:intergenic | 40.0% | |
| TGTACAACAAATTAGCGACC+TGG | + | chr1_4:29396242-29396261 | None:intergenic | 40.0% | |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr1_4:29396214-29396233 | None:intergenic | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr1_4:29396332-29396351 | Msa0159260:intron | 40.0% |
| AGTCTACCTTGCACAAACTA+GGG | + | chr1_4:29396363-29396382 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAAACT+AGG | + | chr1_4:29396364-29396383 | None:intergenic | 40.0% | |
| !! | TGATTTGGGCTGTTTTATCC+TGG | + | chr1_4:29396402-29396421 | None:intergenic | 40.0% |
| TGTTACGAGTATACACTGCA+CGG | - | chr1_4:29396423-29396442 | Msa0159260:CDS | 40.0% | |
| ATTCGTTAACACGAATCGGA+GGG | - | chr1_4:29396572-29396591 | Msa0159260:CDS | 40.0% | |
| !! | GAAGCATCGACTTTGAGATT+TGG | - | chr1_4:29396615-29396634 | Msa0159260:CDS | 40.0% |
| !! | GATTTGGTGAGAAGAATGAG+TGG | - | chr1_4:29396631-29396650 | Msa0159260:CDS | 40.0% |
| TTTGGTGAGAAGAATGAGTG+GGG | - | chr1_4:29396633-29396652 | Msa0159260:CDS | 40.0% | |
| AACAAAAAAACCGCGTGACT+TGG | - | chr1_4:29396685-29396704 | Msa0159260:CDS | 40.0% | |
| ACAAAAAAACCGCGTGACTT+GGG | - | chr1_4:29396686-29396705 | Msa0159260:CDS | 40.0% | |
| TGGAAATATCCGGAAGTTTC+TGG | - | chr1_4:29396805-29396824 | Msa0159260:intron | 40.0% | |
| ! | ATATCCGGAAGTTTCTGGAT+CGG | - | chr1_4:29396810-29396829 | Msa0159260:intron | 40.0% |
| CGTTCACCCTTTCTCAAAAA+TGG | - | chr1_4:29397006-29397025 | Msa0159260:intron | 40.0% | |
| !! | GGGTACCCATTTTTGAGAAA+GGG | + | chr1_4:29397015-29397034 | None:intergenic | 40.0% |
| CACTATGAGAAACTAGTGTG+TGG | + | chr1_4:29397130-29397149 | None:intergenic | 40.0% | |
| GGGATTGCAAATTTACGAGT+TGG | - | chr1_4:29397256-29397275 | Msa0159260:intron | 40.0% | |
| !! | TGCAAATTTACGAGTTGGTG+AGG | - | chr1_4:29397261-29397280 | Msa0159260:intron | 40.0% |
| CCGTTACTATTACTCCATCA+AGG | - | chr1_4:29394738-29394757 | Msa0159260:intron | 40.0% | |
| ! | TTCAAAGTTCTAGCTAGGGT+AGG | - | chr1_4:29397904-29397923 | Msa0159260:intron | 40.0% |
| ! | TCAAAGTTCTAGCTAGGGTA+GGG | - | chr1_4:29397905-29397924 | Msa0159260:intron | 40.0% |
| TGTGTTTCTCCAGATTCAGA+AGG | - | chr1_4:29398104-29398123 | Msa0159260:intron | 40.0% | |
| AGGAAGTCATGAAAACTCTC+TGG | - | chr1_4:29398306-29398325 | Msa0159260:CDS | 40.0% | |
| !! | ACTCTCTGGAGTTGAAAATG+AGG | - | chr1_4:29398320-29398339 | Msa0159260:CDS | 40.0% |
| !! | CTCTCTGGAGTTGAAAATGA+GGG | - | chr1_4:29398321-29398340 | Msa0159260:CDS | 40.0% |
| !! | TCTCTGGAGTTGAAAATGAG+GGG | - | chr1_4:29398322-29398341 | Msa0159260:CDS | 40.0% |
| !!! | CTTGTTTTGAAGGAGTCTAG+AGG | + | chr1_4:29398564-29398583 | None:intergenic | 40.0% |
| CTCTAGACTCCTTCAAAACA+AGG | - | chr1_4:29398562-29398581 | Msa0159260:CDS | 40.0% | |
| !!! | TTCTCAACGCCTTGTTTTGA+AGG | + | chr1_4:29398574-29398593 | None:intergenic | 40.0% |
| CGCGATCAATTTGGCTATAA+TGG | + | chr1_4:29398818-29398837 | None:intergenic | 40.0% | |
| TGTTTCAACATACTATCCGC+CGG | - | chr1_4:29398920-29398939 | Msa0159260:intron | 40.0% | |
| ACGTGAAACTTAAAGGACCA+AGG | - | chr1_4:29399276-29399295 | Msa0159260:intron | 40.0% | |
| CGTGAAACTTAAAGGACCAA+GGG | - | chr1_4:29399277-29399296 | Msa0159260:intron | 40.0% | |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | - | chr1_4:29401139-29401158 | Msa0159260:intron | 40.0% |
| !! | AAGGGCATGCATTTTTGGAA+GGG | + | chr1_4:29401179-29401198 | None:intergenic | 40.0% |
| AAGACACTCGAGAAACTTGT+AGG | - | chr1_4:29401343-29401362 | Msa0159260:intron | 40.0% | |
| !! | GTTCTAAAGAGGAAAGATGC+CGG | - | chr1_4:29401487-29401506 | Msa0159260:intron | 40.0% |
| !! | AAGAGCTTGCACTTTTGGAA+GGG | + | chr1_4:29401527-29401546 | None:intergenic | 40.0% |
| !! | AAGAGCATGCACTTTTGGAA+GGG | + | chr1_4:29401369-29401388 | None:intergenic | 40.0% |
| ! | ATTCTAAAGAGGAGAGACAC+TGG | - | chr1_4:29401139-29401158 | Msa0159260:intron | 40.0% |
| GAGACACTGGAGAAATTTGT+CGG | - | chr1_4:29401881-29401900 | Msa0159260:intron | 40.0% | |
| GTGATAAGCATATTCTACCG+TGG | - | chr1_4:29402164-29402183 | Msa0159260:CDS | 40.0% | |
| ATTCTACCGTGGAAAGACAT+TGG | - | chr1_4:29402175-29402194 | Msa0159260:CDS | 40.0% | |
| GTTTCTCCAATGTCTTTCCA+CGG | + | chr1_4:29402184-29402203 | None:intergenic | 40.0% | |
| !!! | GTAGATCATGCAGTTTTGGA+CGG | + | chr1_4:29402939-29402958 | None:intergenic | 40.0% |
| ! | CTCTGTAGATCATGCAGTTT+TGG | + | chr1_4:29402943-29402962 | None:intergenic | 40.0% |
| AGACTGTCAAACCAACCAAA+TGG | + | chr1_4:29403449-29403468 | None:intergenic | 40.0% | |
| !! | TTTGGTTGGTTTGACAGTCT+TGG | - | chr1_4:29403449-29403468 | Msa0159260:intron | 40.0% |
| TAAATTCCAAACACCCGGTA+GGG | - | chr1_4:29403674-29403693 | Msa0159260:intron | 40.0% | |
| GCATGCACCAAAGAGATTTA+TGG | - | chr1_4:29403790-29403809 | Msa0159260:CDS | 40.0% | |
| ATTGTGGAGTTGAAAATGGG+GGG | - | chr1_4:29403833-29403852 | Msa0159260:CDS | 40.0% | |
| AACTGACAACCACGAATACT+AGG | + | chr1_4:29403890-29403909 | None:intergenic | 40.0% | |
| GTTGTCAGTTCAGTAAAGGT+TGG | - | chr1_4:29403900-29403919 | Msa0159260:intron | 40.0% | |
| GAAATACTTGTCTCCTAGAG+CGG | - | chr1_4:29403957-29403976 | Msa0159260:intron | 40.0% | |
| ! | TTTTCTCATCAATCCGCTCT+AGG | + | chr1_4:29403973-29403992 | None:intergenic | 40.0% |
| ! | GAGGATTCCCAAGAAGTATG+TGG | - | chr1_4:29392861-29392880 | Msa0159260:CDS | 45.0% |
| TGTGTTTCACCCCTGCAAAT+AGG | - | chr1_4:29393256-29393275 | Msa0159260:intron | 45.0% | |
| TTAAACGCCGCCTATTTGCA+GGG | + | chr1_4:29393778-29393797 | None:intergenic | 45.0% | |
| TTTAAACGCCGCCTATTTGC+AGG | + | chr1_4:29393777-29393796 | None:intergenic | 45.0% | |
| ! | CTTTGCAAGGGCAATTTGCT+AGG | + | chr1_4:29393316-29393335 | None:intergenic | 45.0% |
| TGACGTGGCAGTGATTAAGT+TGG | + | chr1_4:29393680-29393699 | None:intergenic | 45.0% | |
| GGAATTGACCAAAATACCCC+TGG | + | chr1_4:29393639-29393658 | None:intergenic | 45.0% | |
| !!! | CCCATGCCATTTTGCTAATC+TGG | - | chr1_4:29393657-29393676 | Msa0159260:intron | 45.0% |
| TGACGTGGCAGTGATTAAGT+TGG | - | chr1_4:29393680-29393699 | Msa0159260:intron | 45.0% | |
| TTTAAACGCCGCCTATTTGC+AGG | - | chr1_4:29393777-29393796 | Msa0159260:intron | 45.0% | |
| TTAAACGCCGCCTATTTGCA+GGG | - | chr1_4:29393778-29393797 | Msa0159260:intron | 45.0% | |
| TGTGTTTCACCCCTGCAAAT+AGG | + | chr1_4:29393256-29393275 | None:intergenic | 45.0% | |
| ACTACCCAGCCAAAATTCTC+AGG | - | chr1_4:29393847-29393866 | Msa0159260:intron | 45.0% | |
| !!! | CTCACCTGAGAATTTTGGCT+GGG | + | chr1_4:29393854-29393873 | None:intergenic | 45.0% |
| !! | ACTCACCTGAGAATTTTGGC+TGG | + | chr1_4:29393855-29393874 | None:intergenic | 45.0% |
| ACTTACCATCCTGCATCCAT+GGG | + | chr1_4:29394404-29394423 | None:intergenic | 45.0% | |
| !! | AGTTGGTGAGGACAAGACTA+TGG | - | chr1_4:29394576-29394595 | Msa0159260:intron | 45.0% |
| GAGGTCCCTTCTTTATAACC+TGG | + | chr1_4:29394915-29394934 | None:intergenic | 45.0% | |
| AAAGAAGGGACCTCTTCTTG+TGG | - | chr1_4:29394921-29394940 | Msa0159260:intron | 45.0% | |
| AACCAAATGGGTGGTAGCAA+AGG | - | chr1_4:29395236-29395255 | Msa0159260:CDS | 45.0% | |
| TAGAAACAAAAGGAGGGGGA+AGG | - | chr1_4:29395291-29395310 | Msa0159260:intron | 45.0% | |
| AGAAACAAAAGGAGGGGGAA+GGG | - | chr1_4:29395292-29395311 | Msa0159260:intron | 45.0% | |
| !!! | GCAATTTTTTGCGGCCGTAA+CGG | + | chr1_4:29395491-29395510 | None:intergenic | 45.0% |
| TAACGGTCGCATTCACGTAT+AGG | + | chr1_4:29395767-29395786 | None:intergenic | 45.0% | |
| ! | CAGTGGAGGCATGATTAAGA+AGG | - | chr1_4:29395941-29395960 | Msa0159260:CDS | 45.0% |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr1_4:29396328-29396347 | None:intergenic | 45.0% | |
| ! | CCTTTCGGTTTTGCATAGAG+CGG | + | chr1_4:29396524-29396543 | None:intergenic | 45.0% |
| CGCTCTATGCAAAACCGAAA+GGG | - | chr1_4:29396522-29396541 | Msa0159260:CDS | 45.0% | |
| CAAAACCGAAAGGGACAGAA+AGG | - | chr1_4:29396531-29396550 | Msa0159260:CDS | 45.0% | |
| CTACTCCTTTCTGTCCCTTT+CGG | + | chr1_4:29396539-29396558 | None:intergenic | 45.0% | |
| GATTCGTTAACACGAATCGG+AGG | - | chr1_4:29396571-29396590 | Msa0159260:CDS | 45.0% | |
| CAAAAAAACCGCGTGACTTG+GGG | - | chr1_4:29396687-29396706 | Msa0159260:CDS | 45.0% | |
| GCGTAAAACGCGTTTGCTTA+AGG | + | chr1_4:29396729-29396748 | None:intergenic | 45.0% | |
| ! | TATCCGGAAGTTTCTGGATC+GGG | - | chr1_4:29396811-29396830 | Msa0159260:intron | 45.0% |
| !! | GGGGTACCCATTTTTGAGAA+AGG | + | chr1_4:29397016-29397035 | None:intergenic | 45.0% |
| TCTCAAAAATGGGTACCCCA+AGG | - | chr1_4:29397017-29397036 | Msa0159260:intron | 45.0% | |
| CTCAAAAATGGGTACCCCAA+GGG | - | chr1_4:29397018-29397037 | Msa0159260:intron | 45.0% | |
| !! | AGTTGGTGAGGACAAGACTA+TGG | - | chr1_4:29394576-29394595 | Msa0159260:intron | 45.0% |
| CTCTTGTGAGTTGTGACTAC+TGG | - | chr1_4:29397332-29397351 | Msa0159260:intron | 45.0% | |
| TGTGAGTTGTGACTACTGGT+TGG | - | chr1_4:29397336-29397355 | Msa0159260:intron | 45.0% | |
| TGAAAATGAGGGGACGATCA+TGG | - | chr1_4:29398332-29398351 | Msa0159260:CDS | 45.0% | |
| CATGGTTATAGGTTCTCTGG+AGG | - | chr1_4:29398385-29398404 | Msa0159260:CDS | 45.0% | |
| ! | GTTATAGGTTCTCTGGAGGT+TGG | - | chr1_4:29398389-29398408 | Msa0159260:CDS | 45.0% |
| GTGATATGGCGCGATCAATT+TGG | + | chr1_4:29398827-29398846 | None:intergenic | 45.0% | |
| CATGAAACTTAAAGGACCGG+CGG | + | chr1_4:29398939-29398958 | None:intergenic | 45.0% | |
| ! | GTGTGTATGTTCGGTTCTAG+AGG | + | chr1_4:29399387-29399406 | None:intergenic | 45.0% |
| TGTTGCCCTCATAGTCTAGT+TGG | + | chr1_4:29399500-29399519 | None:intergenic | 45.0% | |
| TGGCCGGTGTGTATTTCATT+GGG | + | chr1_4:29399626-29399645 | None:intergenic | 45.0% | |
| ATGGCCGGTGTGTATTTCAT+TGG | + | chr1_4:29399627-29399646 | None:intergenic | 45.0% | |
| ATGACACAAACTTACGCCCA+TGG | - | chr1_4:29400602-29400621 | Msa0159260:intron | 45.0% | |
| TTACGCCCATGGTCATATCT+TGG | - | chr1_4:29400613-29400632 | Msa0159260:intron | 45.0% | |
| GGGATTGCAAGCTTAAGAGT+TGG | - | chr1_4:29400767-29400786 | Msa0159260:intron | 45.0% | |
| TGCAAGCTTAAGAGTTGGAG+AGG | - | chr1_4:29400772-29400791 | Msa0159260:intron | 45.0% | |
| AGAGGAGACAGCTATGAAAG+TGG | - | chr1_4:29400790-29400809 | Msa0159260:intron | 45.0% | |
| CCTTGCAACTTCTTAGGGTT+TGG | + | chr1_4:29400977-29400996 | None:intergenic | 45.0% | |
| CCAAACCCTAAGAAGTTGCA+AGG | - | chr1_4:29400974-29400993 | Msa0159260:intron | 45.0% | |
| GAGACACTGGAGAAACTTGT+AGG | - | chr1_4:29401152-29401171 | Msa0159260:intron | 45.0% | |
| !! | GAAGGGCATGCATTTTTGGA+AGG | + | chr1_4:29401180-29401199 | None:intergenic | 45.0% |
| TCCAAAAATGCATGCCCTTC+AGG | - | chr1_4:29401180-29401199 | Msa0159260:intron | 45.0% | |
| CCAAAAATGCATGCCCTTCA+GGG | - | chr1_4:29401181-29401200 | Msa0159260:intron | 45.0% | |
| !! | GAAGAGCATGCACTTTTGGA+AGG | + | chr1_4:29401370-29401389 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | - | chr1_4:29401370-29401389 | Msa0159260:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | - | chr1_4:29401371-29401390 | Msa0159260:intron | 45.0% |
| AAGATGCCGGAGAAACTTGT+AGG | - | chr1_4:29401500-29401519 | Msa0159260:intron | 45.0% | |
| AAGGGTCCTACAAGTTTCTC+CGG | + | chr1_4:29401161-29401180 | None:intergenic | 45.0% | |
| ! | GAAGAGCTTGCACTTTTGGA+AGG | + | chr1_4:29401528-29401547 | None:intergenic | 45.0% |
| ! | CCTTGAAGAGCTTGCACTTT+TGG | + | chr1_4:29401532-29401551 | None:intergenic | 45.0% |
| ! | CCAAAAGTGCAAGCTCTTCA+AGG | - | chr1_4:29401529-29401548 | Msa0159260:intron | 45.0% |
| !! | GAAGAGCATGCACTTTTGGA+AGG | + | chr1_4:29401370-29401389 | None:intergenic | 45.0% |
| ! | TCCAAAAGTGCATGCTCTTC+AGG | - | chr1_4:29401370-29401389 | Msa0159260:intron | 45.0% |
| ! | CCAAAAGTGCATGCTCTTCA+GGG | - | chr1_4:29401371-29401390 | Msa0159260:intron | 45.0% |
| GTAAATTCCAAACACCCGGT+AGG | - | chr1_4:29403673-29403692 | Msa0159260:intron | 45.0% | |
| AATTAACCCTACCGGGTGTT+TGG | + | chr1_4:29403683-29403702 | None:intergenic | 45.0% | |
| TGAAAATGGGGGGACAATCA+TGG | - | chr1_4:29403843-29403862 | Msa0159260:intron | 45.0% | |
| CGTGGTTGTCAGTTCAGTAA+AGG | - | chr1_4:29403896-29403915 | Msa0159260:intron | 45.0% | |
| !!! | TTTTATTTATTAAATATTAG+TGG | + | chr1_4:29394469-29394488 | None:intergenic | 5.0% |
| !! | AATATTTAATAAATAAAATG+TGG | - | chr1_4:29394471-29394490 | Msa0159260:intron | 5.0% |
| !!! | TATCATTTTATATTTATTTT+GGG | + | chr1_4:29395273-29395292 | None:intergenic | 5.0% |
| !! | ATATAAATTTATTTAAGAAA+AGG | + | chr1_4:29398046-29398065 | None:intergenic | 5.0% |
| !!! | CTTTTAATTTTTAAATATAT+TGG | - | chr1_4:29400109-29400128 | Msa0159260:intron | 5.0% |
| !!! | ATTTATTTGTAATTTTTTTA+TGG | - | chr1_4:29402052-29402071 | Msa0159260:intron | 5.0% |
| GTTTCACCCCTGCAAATAGG+CGG | - | chr1_4:29393259-29393278 | Msa0159260:intron | 50.0% | |
| TAAACGCCGCCTATTTGCAG+GGG | + | chr1_4:29393779-29393798 | None:intergenic | 50.0% | |
| CTTTGCAAGGGCAATTTGCC+AGG | - | chr1_4:29393731-29393750 | Msa0159260:intron | 50.0% | |
| ! | TGCCAGGATTAGCGATTGCA+AGG | - | chr1_4:29393747-29393766 | Msa0159260:intron | 50.0% |
| GTCCTTGCAATCGCTAATCC+TGG | + | chr1_4:29393752-29393771 | None:intergenic | 50.0% | |
| TAAACGCCGCCTATTTGCAG+GGG | - | chr1_4:29393779-29393798 | Msa0159260:intron | 50.0% | |
| GTTTCACCCCTGCAAATAGG+CGG | + | chr1_4:29393259-29393278 | None:intergenic | 50.0% | |
| TTGCCACAATCTTACGCCCA+TGG | - | chr1_4:29394385-29394404 | Msa0159260:intron | 50.0% | |
| CATCCATGGGCGTAAGATTG+TGG | + | chr1_4:29394391-29394410 | None:intergenic | 50.0% | |
| AATCTTACGCCCATGGATGC+AGG | - | chr1_4:29394392-29394411 | Msa0159260:intron | 50.0% | |
| GACTTACCATCCTGCATCCA+TGG | + | chr1_4:29394405-29394424 | None:intergenic | 50.0% | |
| AAGCTTGGTTGCTCCCTTGA+TGG | + | chr1_4:29394755-29394774 | None:intergenic | 50.0% | |
| CACCTTTGCTACCACCCATT+TGG | + | chr1_4:29395241-29395260 | None:intergenic | 50.0% | |
| AGCTGTTGCGGTAAGGATTG+CGG | + | chr1_4:29395722-29395741 | None:intergenic | 50.0% | |
| CCTTACCGCAACAGCTGTAA+CGG | - | chr1_4:29395726-29395745 | Msa0159260:CDS | 50.0% | |
| ACAGCTGTAACGGCCGAAAT+CGG | - | chr1_4:29395736-29395755 | Msa0159260:CDS | 50.0% | |
| TACTTTGCAGGTAGGGACAG+TGG | - | chr1_4:29395924-29395943 | Msa0159260:CDS | 50.0% | |
| CGTCCATGGCAGCAATATGT+TGG | - | chr1_4:29396049-29396068 | Msa0159260:intron | 50.0% | |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr1_4:29396354-29396373 | Msa0159260:intron | 50.0% |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr1_4:29396396-29396415 | None:intergenic | 50.0% |
| CGGTTACGTAACGTATCGAG+TGG | + | chr1_4:29396504-29396523 | None:intergenic | 50.0% | |
| CCGCTCTATGCAAAACCGAA+AGG | - | chr1_4:29396521-29396540 | Msa0159260:CDS | 50.0% | |
| CAAAGTCGATGCTTCCTGTG+CGG | + | chr1_4:29396610-29396629 | None:intergenic | 50.0% | |
| GACTTAATCCCCAAGTCACG+CGG | + | chr1_4:29396698-29396717 | None:intergenic | 50.0% | |
| ! | AACGCGTTTTACGCGTGACT+TGG | - | chr1_4:29396735-29396754 | Msa0159260:CDS | 50.0% |
| ! | ACGCGTTTTACGCGTGACTT+GGG | - | chr1_4:29396736-29396755 | Msa0159260:CDS | 50.0% |
| TTGGGGTGACTCTCCAATGT+GGG | - | chr1_4:29397085-29397104 | Msa0159260:intron | 50.0% | |
| AAGCTTGGTTGCTCCCTTGA+TGG | + | chr1_4:29394755-29394774 | None:intergenic | 50.0% | |
| GAGGTCCCTTCCTTATAACC+TGG | + | chr1_4:29397616-29397635 | None:intergenic | 50.0% | |
| AAGGAAGGGACCTCTTCTTG+TGG | - | chr1_4:29397622-29397641 | Msa0159260:intron | 50.0% | |
| GACTATGAGGGCAACATGTG+TGG | - | chr1_4:29399504-29399523 | Msa0159260:intron | 50.0% | |
| ! | CTTAGGGTTTGGTCCCTTGA+TGG | + | chr1_4:29400966-29400985 | None:intergenic | 50.0% |
| !! | CCCTGAAGGGCATGCATTTT+TGG | + | chr1_4:29401184-29401203 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | + | chr1_4:29401374-29401393 | None:intergenic | 50.0% |
| !! | CCCTGAAGAGCATGCACTTT+TGG | + | chr1_4:29401374-29401393 | None:intergenic | 50.0% |
| !! | GGAGAGCATGCACTTTTGGA+CGG | + | chr1_4:29401909-29401928 | None:intergenic | 50.0% |
| ! | TCCAAAAGTGCATGCTCTCC+AGG | - | chr1_4:29401909-29401928 | Msa0159260:intron | 50.0% |
| ! | CCAAAAGTGCATGCTCTCCA+GGG | - | chr1_4:29401910-29401929 | Msa0159260:intron | 50.0% |
| !! | CCATGGGAAGCATGCTCTTT+TGG | + | chr1_4:29402220-29402239 | None:intergenic | 50.0% |
| ! | CCAAAAGAGCATGCTTCCCA+TGG | - | chr1_4:29402217-29402236 | Msa0159260:intron | 50.0% |
| TACTTTGCAGGTGGGGACAG+AGG | - | chr1_4:29394267-29394286 | Msa0159260:intron | 55.0% | |
| TTACGCCCATGGATGCAGGA+TGG | - | chr1_4:29394396-29394415 | Msa0159260:intron | 55.0% | |
| ! | ATGGGTGGTAGCAAAGGTGC+TGG | - | chr1_4:29395242-29395261 | Msa0159260:CDS | 55.0% |
| GCCGCGATGAAACACCGTTA+CGG | - | chr1_4:29395474-29395493 | Msa0159260:intron | 55.0% | |
| GCCGTAACGGTGTTTCATCG+CGG | + | chr1_4:29395478-29395497 | None:intergenic | 55.0% | |
| GGTAAGGATTGCGGTTGTCG+CGG | + | chr1_4:29395713-29395732 | None:intergenic | 55.0% | |
| CCGTTACAGCTGTTGCGGTA+AGG | + | chr1_4:29395729-29395748 | None:intergenic | 55.0% | |
| TTCGGCCGTTACAGCTGTTG+CGG | + | chr1_4:29395734-29395753 | None:intergenic | 55.0% | |
| CAGCTGTAACGGCCGAAATC+GGG | - | chr1_4:29395737-29395756 | Msa0159260:CDS | 55.0% | |
| TTTGCAGGTAGGGACAGTGG+AGG | - | chr1_4:29395927-29395946 | Msa0159260:CDS | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr1_4:29396221-29396240 | Msa0159260:intron | 55.0% | |
| TTACTGGGTGAGTCACGACC+AGG | - | chr1_4:29396221-29396240 | Msa0159260:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr1_4:29396391-29396410 | None:intergenic | 55.0% |
| GGAGAAGAGAGAAACCGCAC+AGG | - | chr1_4:29396593-29396612 | Msa0159260:CDS | 55.0% | |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | - | chr1_4:29396652-29396671 | Msa0159260:CDS | 55.0% |
| ! | CGCGTTTTACGCGTGACTTG+GGG | - | chr1_4:29396737-29396756 | Msa0159260:CDS | 55.0% |
| CGACCCGATCCAGAAACTTC+CGG | + | chr1_4:29396817-29396836 | None:intergenic | 55.0% | |
| ! | CGGAAGTTTCTGGATCGGGT+CGG | - | chr1_4:29396815-29396834 | Msa0159260:intron | 55.0% |
| GTTGGGGTGACTCTCCAATG+TGG | - | chr1_4:29397084-29397103 | Msa0159260:intron | 55.0% | |
| !! | CCCTGGAGAGCATGCACTTT+TGG | + | chr1_4:29401913-29401932 | None:intergenic | 55.0% |
| TTTGCAGGTGGGGACAGAGG+AGG | - | chr1_4:29394270-29394289 | Msa0159260:intron | 60.0% | |
| CTATCAACCACGCCGTCTCC+AGG | - | chr1_4:29396381-29396400 | Msa0159260:CDS | 60.0% | |
| ! | ACCTCCAAGGGTGTGCCCTT+GGG | + | chr1_4:29397036-29397055 | None:intergenic | 60.0% |
| AAGGGTGGGGTGACCTCCAA+GGG | + | chr1_4:29397048-29397067 | None:intergenic | 60.0% | |
| TAAGGGTGGGGTGACCTCCA+AGG | + | chr1_4:29397049-29397068 | None:intergenic | 60.0% | |
| GAGGGCAACATGTGTGGCTC+TGG | - | chr1_4:29399510-29399529 | Msa0159260:intron | 60.0% | |
| AGGTGGGGACAGAGGAGGCA+TGG | - | chr1_4:29394275-29394294 | Msa0159260:intron | 65.0% | |
| ! | GTACCCCAAGGGCACACCCT+TGG | - | chr1_4:29397029-29397048 | Msa0159260:intron | 65.0% |
| ! | CCTCCAAGGGTGTGCCCTTG+GGG | + | chr1_4:29397035-29397054 | None:intergenic | 65.0% |
| ! | GACCTCCAAGGGTGTGCCCT+TGG | + | chr1_4:29397037-29397056 | None:intergenic | 65.0% |
| ! | CCCCAAGGGCACACCCTTGG+AGG | - | chr1_4:29397032-29397051 | Msa0159260:intron | 70.0% |
| CAACCCAAGCCCGGCCCAGC+CGG | - | chr1_4:29396947-29396966 | Msa0159260:intron | 75.0% | |
| AACCCAAGCCCGGCCCAGCC+GGG | - | chr1_4:29396948-29396967 | Msa0159260:intron | 75.0% | |
| ! | CGCCCGGCTGGGCCGGGCTT+GGG | + | chr1_4:29396953-29396972 | None:intergenic | 85.0% |
| ! | CCAAGCCCGGCCCAGCCGGG+CGG | - | chr1_4:29396951-29396970 | Msa0159260:intron | 85.0% |
| ! | ACGCCACCGCCCGGCTGGGC+CGG | + | chr1_4:29396960-29396979 | None:intergenic | 85.0% |
| ! | CGCGACGCCACCGCCCGGCT+GGG | + | chr1_4:29396964-29396983 | None:intergenic | 85.0% |
| ! | TCGCGCGCGACGCCACCGCC+CGG | + | chr1_4:29396969-29396988 | None:intergenic | 85.0% |
| ! | CCGCCCGGCTGGGCCGGGCT+TGG | + | chr1_4:29396954-29396973 | None:intergenic | 90.0% |
| ! | AGCCCGGCCCAGCCGGGCGG+TGG | - | chr1_4:29396954-29396973 | Msa0159260:intron | 90.0% |
| ! | CGCCACCGCCCGGCTGGGCC+GGG | + | chr1_4:29396959-29396978 | None:intergenic | 90.0% |
| ! | GCGCGACGCCACCGCCCGGC+TGG | + | chr1_4:29396965-29396984 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 29392692 | 29404024 | 29392692 | ID=Msa0159260;Name=Msa0159260 |
| chr1_4 | mRNA | 29392692 | 29404024 | 29392692 | ID=Msa0159260-mRNA-1;Parent=Msa0159260;Name=Msa0159260-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0.16|0.15|0.94|1|1|19|0|933 |
| chr1_4 | exon | 29403968 | 29404024 | 29403968 | ID=Msa0159260-mRNA-1:exon:9511;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29403746 | 29403854 | 29403746 | ID=Msa0159260-mRNA-1:exon:9510;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29403460 | 29403629 | 29403460 | ID=Msa0159260-mRNA-1:exon:9509;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29402299 | 29402439 | 29402299 | ID=Msa0159260-mRNA-1:exon:9508;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29402067 | 29402202 | 29402067 | ID=Msa0159260-mRNA-1:exon:9507;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29401705 | 29401800 | 29401705 | ID=Msa0159260-mRNA-1:exon:9506;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29400646 | 29400782 | 29400646 | ID=Msa0159260-mRNA-1:exon:9505;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29399373 | 29399505 | 29399373 | ID=Msa0159260-mRNA-1:exon:9504;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29398535 | 29398599 | 29398535 | ID=Msa0159260-mRNA-1:exon:9503;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29398191 | 29398436 | 29398191 | ID=Msa0159260-mRNA-1:exon:9502;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29396367 | 29396775 | 29396367 | ID=Msa0159260-mRNA-1:exon:9501;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29396082 | 29396215 | 29396082 | ID=Msa0159260-mRNA-1:exon:9500;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29395721 | 29395994 | 29395721 | ID=Msa0159260-mRNA-1:exon:9499;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29395514 | 29395612 | 29395514 | ID=Msa0159260-mRNA-1:exon:9498;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29395166 | 29395264 | 29395166 | ID=Msa0159260-mRNA-1:exon:9497;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29394976 | 29395074 | 29394976 | ID=Msa0159260-mRNA-1:exon:9496;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29394478 | 29394576 | 29394478 | ID=Msa0159260-mRNA-1:exon:9495;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29393026 | 29393090 | 29393026 | ID=Msa0159260-mRNA-1:exon:9494;Parent=Msa0159260-mRNA-1 |
| chr1_4 | exon | 29392692 | 29392925 | 29392692 | ID=Msa0159260-mRNA-1:exon:9493;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29403968 | 29404024 | 29403968 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29403746 | 29403854 | 29403746 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29403460 | 29403629 | 29403460 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29402299 | 29402439 | 29402299 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29402067 | 29402202 | 29402067 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29401705 | 29401800 | 29401705 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29400646 | 29400782 | 29400646 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29399373 | 29399505 | 29399373 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29398535 | 29398599 | 29398535 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29398191 | 29398436 | 29398191 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29396367 | 29396775 | 29396367 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29396082 | 29396215 | 29396082 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29395721 | 29395994 | 29395721 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29395514 | 29395612 | 29395514 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29395166 | 29395264 | 29395166 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29394976 | 29395074 | 29394976 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29394478 | 29394576 | 29394478 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29393026 | 29393090 | 29393026 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| chr1_4 | CDS | 29392692 | 29392925 | 29392692 | ID=Msa0159260-mRNA-1:cds;Parent=Msa0159260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
