Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159270 | A0A072VG97 | 87.290 | 417 | 48 | 5 | 1 | 416 | 1 | 413 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0159270 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159270 | MtrunA17_Chr1g0163231 | 89.619 | 289 | 28 | 2 | 1 | 289 | 1 | 287 | 0.0 | 535 |
| Msa0159270 | MtrunA17_Chr1g0171611 | 85.324 | 293 | 27 | 2 | 1 | 292 | 1 | 278 | 6.45e-176 | 492 |
| Msa0159270 | MtrunA17_Chr1g0163181 | 44.018 | 443 | 201 | 12 | 1 | 411 | 1 | 428 | 3.63e-109 | 328 |
| Msa0159270 | MtrunA17_Chr1g0163201 | 46.699 | 409 | 162 | 13 | 24 | 411 | 18 | 391 | 3.64e-106 | 319 |
| Msa0159270 | MtrunA17_Chr1g0163261 | 57.047 | 298 | 100 | 8 | 1 | 283 | 1 | 285 | 9.63e-102 | 304 |
| Msa0159270 | MtrunA17_Chr1g0163251 | 49.080 | 326 | 138 | 8 | 1 | 308 | 1 | 316 | 2.05e-95 | 291 |
| Msa0159270 | MtrunA17_Chr1g0163111 | 44.048 | 252 | 114 | 11 | 162 | 411 | 1 | 227 | 2.07e-51 | 172 |
| Msa0159270 | MtrunA17_Chr1g0163151 | 39.841 | 251 | 119 | 8 | 162 | 411 | 1 | 220 | 2.33e-45 | 156 |
| Msa0159270 | MtrunA17_Chr1g0163241 | 59.375 | 128 | 48 | 2 | 24 | 148 | 22 | 148 | 4.25e-44 | 151 |
| Msa0159270 | MtrunA17_Chr1g0163191 | 55.285 | 123 | 51 | 1 | 1 | 123 | 1 | 119 | 1.72e-40 | 141 |
| Msa0159270 | MtrunA17_Chr1g0162151 | 42.745 | 255 | 94 | 11 | 162 | 412 | 1 | 207 | 3.96e-40 | 142 |
| Msa0159270 | MtrunA17_Chr6g0476171 | 35.496 | 262 | 136 | 6 | 159 | 411 | 7 | 244 | 1.12e-39 | 142 |
| Msa0159270 | MtrunA17_Chr3g0131891 | 31.250 | 288 | 182 | 8 | 6 | 279 | 16 | 301 | 4.66e-32 | 124 |
| Msa0159270 | MtrunA17_Chr7g0233561 | 30.405 | 296 | 184 | 7 | 6 | 279 | 15 | 310 | 8.67e-32 | 123 |
| Msa0159270 | MtrunA17_Chr8g0390841 | 25.049 | 511 | 260 | 17 | 2 | 413 | 32 | 518 | 2.70e-30 | 122 |
| Msa0159270 | MtrunA17_Chr1g0163131 | 47.059 | 153 | 71 | 4 | 268 | 411 | 154 | 305 | 1.01e-29 | 117 |
| Msa0159270 | MtrunA17_Chr1g0163131 | 27.815 | 302 | 183 | 8 | 5 | 280 | 14 | 306 | 1.52e-27 | 111 |
| Msa0159270 | MtrunA17_Chr1g0162161 | 43.151 | 146 | 63 | 5 | 25 | 156 | 4 | 143 | 3.10e-29 | 111 |
| Msa0159270 | MtrunA17_Chr1g0163101 | 36.095 | 169 | 93 | 4 | 2 | 156 | 3 | 170 | 1.69e-27 | 107 |
| Msa0159270 | MtrunA17_Chr1g0163091 | 49.600 | 125 | 56 | 4 | 162 | 283 | 1 | 121 | 1.96e-27 | 107 |
| Msa0159270 | MtrunA17_Chr1g0208771 | 25.376 | 465 | 254 | 19 | 24 | 413 | 12 | 458 | 2.81e-26 | 110 |
| Msa0159270 | MtrunA17_Chr7g0233521 | 28.881 | 277 | 158 | 8 | 25 | 279 | 2 | 261 | 3.30e-25 | 103 |
| Msa0159270 | MtrunA17_Chr1g0163121 | 39.416 | 137 | 80 | 2 | 20 | 156 | 6 | 139 | 8.20e-25 | 99.4 |
| Msa0159270 | MtrunA17_Chr7g0233531 | 30.072 | 276 | 156 | 9 | 25 | 279 | 2 | 261 | 9.37e-24 | 100 |
| Msa0159270 | MtrunA17_Chr1g0163141 | 36.923 | 130 | 73 | 2 | 23 | 144 | 9 | 137 | 1.45e-22 | 94.4 |
| Msa0159270 | MtrunA17_Chr7g0233541 | 26.712 | 292 | 162 | 6 | 25 | 279 | 2 | 278 | 1.45e-22 | 97.1 |
| Msa0159270 | MtrunA17_Chr1g0163081 | 41.304 | 138 | 72 | 4 | 25 | 156 | 6 | 140 | 1.92e-22 | 92.8 |
| Msa0159270 | MtrunA17_Chr5g0419201 | 34.444 | 180 | 92 | 4 | 3 | 156 | 10 | 189 | 6.90e-22 | 92.8 |
| Msa0159270 | MtrunA17_Chr1g0163221 | 27.241 | 290 | 181 | 8 | 9 | 279 | 11 | 289 | 8.33e-22 | 95.9 |
| Msa0159270 | MtrunA17_Chr6g0476181 | 39.669 | 121 | 71 | 2 | 25 | 144 | 2 | 121 | 4.69e-21 | 89.4 |
| Msa0159270 | MtrunA17_Chr7g0233571 | 30.857 | 175 | 112 | 3 | 6 | 176 | 7 | 176 | 1.50e-20 | 89.7 |
| Msa0159270 | MtrunA17_Chr4g0067431 | 25.902 | 305 | 183 | 11 | 9 | 279 | 15 | 310 | 6.79e-20 | 90.1 |
| Msa0159270 | MtrunA17_Chr3g0103181 | 25.086 | 291 | 180 | 11 | 6 | 279 | 9 | 278 | 1.31e-18 | 85.5 |
| Msa0159270 | MtrunA17_Chr1g0163071 | 24.749 | 299 | 166 | 11 | 25 | 279 | 2 | 285 | 2.21e-18 | 85.5 |
| Msa0159270 | MtrunA17_Chr3g0103151 | 32.639 | 144 | 87 | 3 | 6 | 147 | 9 | 144 | 4.13e-18 | 81.3 |
| Msa0159270 | MtrunA17_Chr6g0467351 | 39.831 | 118 | 64 | 3 | 9 | 123 | 15 | 128 | 4.98e-18 | 82.8 |
| Msa0159270 | MtrunA17_Chr3g0103171 | 25.556 | 270 | 177 | 7 | 24 | 279 | 5 | 264 | 1.03e-17 | 82.8 |
| Msa0159270 | MtrunA17_Chr3g0103191 | 27.230 | 213 | 131 | 5 | 6 | 203 | 9 | 212 | 1.99e-17 | 81.6 |
| Msa0159270 | MtrunA17_Chr1g0163161 | 35.878 | 131 | 70 | 5 | 37 | 156 | 1 | 128 | 4.45e-15 | 71.6 |
| Msa0159270 | MtrunA17_Chr1g0163061 | 37.000 | 100 | 60 | 2 | 9 | 105 | 15 | 114 | 1.38e-13 | 70.5 |
| Msa0159270 | MtrunA17_Chr3g0077451 | 24.060 | 266 | 162 | 8 | 23 | 285 | 10 | 238 | 5.26e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159270 | AT3G18990.2 | 23.370 | 368 | 189 | 11 | 9 | 304 | 6 | 352 | 1.60e-11 | 65.9 |
| Msa0159270 | AT1G49475.1 | 33.898 | 118 | 69 | 5 | 9 | 123 | 34 | 145 | 3.86e-11 | 62.4 |
| Msa0159270 | AT3G18990.1 | 22.923 | 349 | 183 | 9 | 9 | 285 | 6 | 340 | 5.97e-11 | 63.9 |
Find 69 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_4:-29573247 | None:intergenic |
| GTGCTCAAAAGGAAATATTT+TGG | 0.171981 | 1_4:+29572501 | Msa0159270:CDS |
| AAAATCTTAACCTTAAAATA+TGG | 0.178478 | 1_4:-29572623 | None:intergenic |
| TCTTCTTATGATGATGATAT+TGG | 0.197327 | 1_4:+29573591 | Msa0159270:CDS |
| ATTATCAGTCAACAGGATTT+AGG | 0.220407 | 1_4:+29574323 | Msa0159270:CDS |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.235240 | 1_4:+29572540 | Msa0159270:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_4:+29572438 | Msa0159270:CDS |
| TTTGGAAGTCTAAGAATTAC+TGG | 0.251892 | 1_4:-29572476 | None:intergenic |
| GCTTTAGTATTCAAATATTT+AGG | 0.260785 | 1_4:+29572596 | Msa0159270:CDS |
| TATTTGAATGAGAACCTTAA+AGG | 0.282945 | 1_4:+29573233 | Msa0159270:CDS |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_4:-29572470 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_4:-29572435 | None:intergenic |
| ACTATCTTCAAGAACTCTTC+TGG | 0.329140 | 1_4:-29572180 | None:intergenic |
| AAGAAGCATAAAGAGCTTCA+TGG | 0.346703 | 1_4:+29574247 | Msa0159270:CDS |
| CTTCTTATGATGATGATATT+GGG | 0.358933 | 1_4:+29573592 | Msa0159270:CDS |
| TGGAGCGTGAAGGTGATATT+TGG | 0.370024 | 1_4:+29572525 | Msa0159270:CDS |
| GGGAAGAGAAGAGGCATTGA+AGG | 0.377729 | 1_4:+29573612 | Msa0159270:CDS |
| GAAGATTGCAAATTGAAGAT+TGG | 0.386030 | 1_4:+29574373 | Msa0159270:CDS |
| AACATCACCTTCACTTTCAT+AGG | 0.386187 | 1_4:-29573290 | None:intergenic |
| TCGAAATCATGAACTACATA+AGG | 0.397577 | 1_4:+29572203 | Msa0159270:CDS |
| TTTGGCTTGGGTAATAGTTA+TGG | 0.402099 | 1_4:-29573441 | None:intergenic |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_4:-29572434 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_4:+29573257 | Msa0159270:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1_4:+29572569 | Msa0159270:CDS |
| CATTGTGTTTCAGCAGACTT+AGG | 0.419879 | 1_4:+29574066 | Msa0159270:intron |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_4:-29572993 | None:intergenic |
| ATTTGAATGAGAACCTTAAA+GGG | 0.440321 | 1_4:+29573234 | Msa0159270:CDS |
| GTGACATATTATCAGTCAAC+AGG | 0.441169 | 1_4:+29574316 | Msa0159270:CDS |
| AAATTTGTGGAGTTGACAAA+TGG | 0.443876 | 1_4:+29574271 | Msa0159270:CDS |
| ACTTCCAAATGGTGCTCAAA+AGG | 0.444677 | 1_4:+29572490 | Msa0159270:CDS |
| AAATCTTAACCTTAAAATAT+GGG | 0.446492 | 1_4:-29572622 | None:intergenic |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1_4:+29573561 | Msa0159270:intron |
| AGAGCTTCATGGAAAATTTG+TGG | 0.455759 | 1_4:+29574258 | Msa0159270:CDS |
| GGCAAATGGCTTCCAACCAC+TGG | 0.462531 | 1_4:-29573348 | None:intergenic |
| AATTTGTGGAGTTGACAAAT+GGG | 0.465975 | 1_4:+29574272 | Msa0159270:CDS |
| TATTTGGTTTAAGAGAAATT+GGG | 0.488183 | 1_4:+29572541 | Msa0159270:CDS |
| TTACGCCCATGGCTATACTT+TGG | 0.489114 | 1_4:+29573022 | Msa0159270:CDS |
| AACAACTAGTACTCTAGTAG+TGG | 0.499577 | 1_4:-29574465 | None:intergenic |
| GAGGGTTCCCAAGAAATTTG+TGG | 0.503049 | 1_4:+29572427 | Msa0159270:intron |
| CGAAATCATGAACTACATAA+GGG | 0.505471 | 1_4:+29572204 | Msa0159270:CDS |
| ACAGGATTTAGGTTCTATGC+AGG | 0.511151 | 1_4:+29574334 | Msa0159270:CDS |
| GAGAGGAGGTATGATTAAGA+AGG | 0.513052 | 1_4:+29572926 | Msa0159270:CDS |
| TTCATTGATGAAAGTTGTGA+AGG | 0.513828 | 1_4:+29572686 | Msa0159270:CDS |
| TACTTTGCAGGTAGTAAGAG+AGG | 0.516159 | 1_4:+29572909 | Msa0159270:intron |
| TTTGTGGAGTTGACAAATGG+GGG | 0.523569 | 1_4:+29574274 | Msa0159270:CDS |
| GATTTAGGTTCTATGCAGGT+TGG | 0.523741 | 1_4:+29574338 | Msa0159270:CDS |
| GACTTACCAAAGTATAGCCA+TGG | 0.533080 | 1_4:-29573028 | None:intergenic |
| GTAATTCTTAGACTTCCAAA+TGG | 0.548786 | 1_4:+29572479 | Msa0159270:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.552649 | 1_4:+29573622 | Msa0159270:CDS |
| ACACGAATCTCGATTGTGAT+CGG | 0.556178 | 1_4:-29574105 | None:intergenic |
| GACAATGTTACTAATAGTGC+TGG | 0.567424 | 1_4:+29572746 | Msa0159270:CDS |
| ATAGTTATGGTGAATGAAAG+TGG | 0.568370 | 1_4:-29573428 | None:intergenic |
| ACAACTAGTACTCTAGTAGT+GGG | 0.569352 | 1_4:-29574464 | None:intergenic |
| ATTTGTGGAGTTGACAAATG+GGG | 0.577541 | 1_4:+29574273 | Msa0159270:CDS |
| GATGATATTGGGAAGAGAAG+AGG | 0.582027 | 1_4:+29573603 | Msa0159270:CDS |
| TCGTGTGAATTCTACTTACC+CGG | 0.582737 | 1_4:+29574122 | Msa0159270:CDS |
| TTAGTATTCAAATATTTAGG+TGG | 0.586781 | 1_4:+29572599 | Msa0159270:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1_4:-29573212 | None:intergenic |
| ATAGTGCTGGCACATCTCAA+AGG | 0.602521 | 1_4:+29572759 | Msa0159270:CDS |
| CTTGCATTGTGACCAGTGGT+TGG | 0.607128 | 1_4:+29573336 | Msa0159270:CDS |
| AGTACATACTCGAAAGAACA+TGG | 0.608206 | 1_4:-29573650 | None:intergenic |
| TTGTCACAATCTTACGCCCA+TGG | 0.612713 | 1_4:+29573011 | Msa0159270:CDS |
| TGTGTTTCAGCAGACTTAGG+TGG | 0.616192 | 1_4:+29574069 | Msa0159270:intron |
| ATAACTATTACCCAAGCCAA+AGG | 0.622711 | 1_4:+29573443 | Msa0159270:CDS |
| TTTGCAGGTAGTAAGAGAGG+AGG | 0.644007 | 1_4:+29572912 | Msa0159270:intron |
| ACTTACCAAAGTATAGCCAT+GGG | 0.659069 | 1_4:-29573027 | None:intergenic |
| AGAACTTGCATTGTGACCAG+TGG | 0.689771 | 1_4:+29573332 | Msa0159270:CDS |
| CAACTAGTACTCTAGTAGTG+GGG | 0.703552 | 1_4:-29574463 | None:intergenic |
| GAACATGCCTATGAAAGTGA+AGG | 0.707159 | 1_4:+29573283 | Msa0159270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAAATAAAGTAAGA+AGG | - | chr1_4:29573474-29573493 | None:intergenic | 10.0% |
| !!! | AGTTTTTAGATTTTTTAAAT+AGG | + | chr1_4:29573680-29573699 | Msa0159270:intron | 10.0% |
| !!! | CTTTTTAAAAAATTATAACT+AGG | + | chr1_4:29573736-29573755 | Msa0159270:intron | 10.0% |
| !! | ATAAATTATTTAAAAGTTCA+AGG | + | chr1_4:29573876-29573895 | Msa0159270:intron | 10.0% |
| !!! | TTTTTTTAAATAAAGTAAGA+AGG | - | chr1_4:29573474-29573493 | None:intergenic | 10.0% |
| !!! | AGTTTTTAGATTTTTTAAAT+AGG | + | chr1_4:29573680-29573699 | Msa0159270:intron | 10.0% |
| !!! | CTTTTTAAAAAATTATAACT+AGG | + | chr1_4:29573736-29573755 | Msa0159270:intron | 10.0% |
| !! | ATAAATTATTTAAAAGTTCA+AGG | + | chr1_4:29573876-29573895 | Msa0159270:intron | 10.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | - | chr1_4:29572329-29572348 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | - | chr1_4:29572399-29572418 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | - | chr1_4:29572625-29572644 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | - | chr1_4:29572626-29572645 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | + | chr1_4:29572626-29572645 | Msa0159270:CDS | 15.0% |
| !!! | TTCATCAATGAATTTTATAT+TGG | - | chr1_4:29572678-29572697 | None:intergenic | 15.0% |
| !!! | GTTCAAATATTATTTTTTGA+AGG | + | chr1_4:29573074-29573093 | Msa0159270:intron | 15.0% |
| !!! | GTTCTAAATTATTAGTTATT+TGG | + | chr1_4:29573104-29573123 | Msa0159270:intron | 15.0% |
| !!! | TATAAGTTACTAGTAAATTT+TGG | + | chr1_4:29573144-29573163 | Msa0159270:intron | 15.0% |
| !!! | AACATGTAAGTTATATTTTT+TGG | - | chr1_4:29573372-29573391 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACATGT+TGG | + | chr1_4:29573371-29573390 | Msa0159270:CDS | 15.0% |
| !! | CAATTGATATTAAACAAATT+TGG | - | chr1_4:29573523-29573542 | None:intergenic | 15.0% |
| !!! | TGAACTAGTTTTTTTTTAAT+TGG | - | chr1_4:29573903-29573922 | None:intergenic | 15.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | - | chr1_4:29572329-29572348 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGAATA+AGG | - | chr1_4:29572399-29572418 | None:intergenic | 15.0% |
| !! | AAATCTTAACCTTAAAATAT+GGG | - | chr1_4:29572625-29572644 | None:intergenic | 15.0% |
| !! | AAAATCTTAACCTTAAAATA+TGG | - | chr1_4:29572626-29572645 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATTTT+TGG | + | chr1_4:29572626-29572645 | Msa0159270:CDS | 15.0% |
| !!! | TTCATCAATGAATTTTATAT+TGG | - | chr1_4:29572678-29572697 | None:intergenic | 15.0% |
| !!! | GTTCAAATATTATTTTTTGA+AGG | + | chr1_4:29573074-29573093 | Msa0159270:intron | 15.0% |
| !!! | GTTCTAAATTATTAGTTATT+TGG | + | chr1_4:29573104-29573123 | Msa0159270:intron | 15.0% |
| !!! | TATAAGTTACTAGTAAATTT+TGG | + | chr1_4:29573144-29573163 | Msa0159270:intron | 15.0% |
| !!! | AACATGTAAGTTATATTTTT+TGG | - | chr1_4:29573372-29573391 | None:intergenic | 15.0% |
| !! | AAAAAATATAACTTACATGT+TGG | + | chr1_4:29573371-29573390 | Msa0159270:CDS | 15.0% |
| !! | CAATTGATATTAAACAAATT+TGG | - | chr1_4:29573523-29573542 | None:intergenic | 15.0% |
| !!! | TGAACTAGTTTTTTTTTAAT+TGG | - | chr1_4:29573903-29573922 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | + | chr1_4:29572540-29572559 | Msa0159270:CDS | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | + | chr1_4:29572541-29572560 | Msa0159270:CDS | 20.0% |
| !! | GCTTTAGTATTCAAATATTT+AGG | + | chr1_4:29572596-29572615 | Msa0159270:CDS | 20.0% |
| !! | TTAGTATTCAAATATTTAGG+TGG | + | chr1_4:29572599-29572618 | Msa0159270:CDS | 20.0% |
| !!! | TTGTTATTCTACCTTATATA+TGG | + | chr1_4:29572861-29572880 | Msa0159270:intron | 20.0% |
| !!! | ATCTATTTTAGCCATATATA+AGG | - | chr1_4:29572875-29572894 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTTTTACTTTGC+AGG | + | chr1_4:29572897-29572916 | Msa0159270:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_4:29573365-29573384 | None:intergenic | 20.0% |
| !! | TTTAACATAATTAATCCTAC+CGG | - | chr1_4:29574144-29574163 | None:intergenic | 20.0% |
| !! | AGGATTAATTATGTTAAATG+TGG | + | chr1_4:29574146-29574165 | Msa0159270:intron | 20.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | + | chr1_4:29572540-29572559 | Msa0159270:CDS | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | + | chr1_4:29572541-29572560 | Msa0159270:CDS | 20.0% |
| !! | GCTTTAGTATTCAAATATTT+AGG | + | chr1_4:29572596-29572615 | Msa0159270:CDS | 20.0% |
| !! | TTAGTATTCAAATATTTAGG+TGG | + | chr1_4:29572599-29572618 | Msa0159270:CDS | 20.0% |
| !!! | TTGTTATTCTACCTTATATA+TGG | + | chr1_4:29572861-29572880 | Msa0159270:intron | 20.0% |
| !!! | ATCTATTTTAGCCATATATA+AGG | - | chr1_4:29572875-29572894 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTTTTTACTTTGC+AGG | + | chr1_4:29572897-29572916 | Msa0159270:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | - | chr1_4:29573365-29573384 | None:intergenic | 20.0% |
| !! | TTTAACATAATTAATCCTAC+CGG | - | chr1_4:29574144-29574163 | None:intergenic | 20.0% |
| !! | AGGATTAATTATGTTAAATG+TGG | + | chr1_4:29574146-29574165 | Msa0159270:intron | 20.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | - | chr1_4:29572307-29572326 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_4:29572437-29572456 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_4:29572438-29572457 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_4:29572438-29572457 | Msa0159270:CDS | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1_4:29572502-29572521 | Msa0159270:CDS | 25.0% |
| ! | ATTATTCAGCAAAAAATCAC+AGG | + | chr1_4:29572803-29572822 | Msa0159270:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_4:29573186-29573205 | Msa0159270:intron | 25.0% |
| ! | TATTTGAATGAGAACCTTAA+AGG | + | chr1_4:29573233-29573252 | Msa0159270:CDS | 25.0% |
| ! | ATTTGAATGAGAACCTTAAA+GGG | + | chr1_4:29573234-29573253 | Msa0159270:CDS | 25.0% |
| !! | TCTTCTTATGATGATGATAT+TGG | + | chr1_4:29573591-29573610 | Msa0159270:CDS | 25.0% |
| !! | CTTCTTATGATGATGATATT+GGG | + | chr1_4:29573592-29573611 | Msa0159270:CDS | 25.0% |
| !! | TAACTAGGTTTTCTAACATT+AGG | + | chr1_4:29573751-29573770 | Msa0159270:intron | 25.0% |
| ! | ATTTATAATTTAAGAGGGAG+AGG | - | chr1_4:29573862-29573881 | None:intergenic | 25.0% |
| ! | TTAACATAATTAATCCTACC+GGG | - | chr1_4:29574143-29574162 | None:intergenic | 25.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | - | chr1_4:29572307-29572326 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | - | chr1_4:29572437-29572456 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | - | chr1_4:29572438-29572457 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | + | chr1_4:29572438-29572457 | Msa0159270:CDS | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | + | chr1_4:29572502-29572521 | Msa0159270:CDS | 25.0% |
| ! | ATTATTCAGCAAAAAATCAC+AGG | + | chr1_4:29572803-29572822 | Msa0159270:CDS | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | + | chr1_4:29573186-29573205 | Msa0159270:intron | 25.0% |
| ! | TATTTGAATGAGAACCTTAA+AGG | + | chr1_4:29573233-29573252 | Msa0159270:CDS | 25.0% |
| ! | ATTTGAATGAGAACCTTAAA+GGG | + | chr1_4:29573234-29573253 | Msa0159270:CDS | 25.0% |
| !! | TCTTCTTATGATGATGATAT+TGG | + | chr1_4:29573591-29573610 | Msa0159270:CDS | 25.0% |
| !! | CTTCTTATGATGATGATATT+GGG | + | chr1_4:29573592-29573611 | Msa0159270:CDS | 25.0% |
| !! | TAACTAGGTTTTCTAACATT+AGG | + | chr1_4:29573751-29573770 | Msa0159270:intron | 25.0% |
| ! | ATTTATAATTTAAGAGGGAG+AGG | - | chr1_4:29573862-29573881 | None:intergenic | 25.0% |
| ! | TTAACATAATTAATCCTACC+GGG | - | chr1_4:29574143-29574162 | None:intergenic | 25.0% |
| TCGAAATCATGAACTACATA+AGG | + | chr1_4:29572203-29572222 | Msa0159270:CDS | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | + | chr1_4:29572204-29572223 | Msa0159270:CDS | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | - | chr1_4:29572382-29572401 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_4:29572473-29572492 | None:intergenic | 30.0% | |
| TTTGGAAGTCTAAGAATTAC+TGG | - | chr1_4:29572479-29572498 | None:intergenic | 30.0% | |
| GTAATTCTTAGACTTCCAAA+TGG | + | chr1_4:29572479-29572498 | Msa0159270:CDS | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1_4:29572501-29572520 | Msa0159270:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | + | chr1_4:29572505-29572524 | Msa0159270:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1_4:29572569-29572588 | Msa0159270:CDS | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | + | chr1_4:29572640-29572659 | Msa0159270:CDS | 30.0% |
| TTCATTGATGAAAGTTGTGA+AGG | + | chr1_4:29572686-29572705 | Msa0159270:CDS | 30.0% | |
| ACATCTCAAAGGAGAAAAAA+CGG | + | chr1_4:29572770-29572789 | Msa0159270:CDS | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_4:29572996-29573015 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_4:29573193-29573212 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_4:29573431-29573450 | None:intergenic | 30.0% | |
| AAGTAAGAAGGAAAAACCTT+TGG | - | chr1_4:29573462-29573481 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_4:29573552-29573571 | Msa0159270:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_4:29573559-29573578 | None:intergenic | 30.0% | |
| AAATTTGTGGAGTTGACAAA+TGG | + | chr1_4:29574271-29574290 | Msa0159270:CDS | 30.0% | |
| AATTTGTGGAGTTGACAAAT+GGG | + | chr1_4:29574272-29574291 | Msa0159270:CDS | 30.0% | |
| ATTATCAGTCAACAGGATTT+AGG | + | chr1_4:29574323-29574342 | Msa0159270:CDS | 30.0% | |
| GAAGATTGCAAATTGAAGAT+TGG | + | chr1_4:29574373-29574392 | Msa0159270:CDS | 30.0% | |
| TCGAAATCATGAACTACATA+AGG | + | chr1_4:29572203-29572222 | Msa0159270:CDS | 30.0% | |
| CGAAATCATGAACTACATAA+GGG | + | chr1_4:29572204-29572223 | Msa0159270:CDS | 30.0% | |
| ATAAGGATATGTAATGCAAC+AGG | - | chr1_4:29572382-29572401 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | - | chr1_4:29572473-29572492 | None:intergenic | 30.0% | |
| TTTGGAAGTCTAAGAATTAC+TGG | - | chr1_4:29572479-29572498 | None:intergenic | 30.0% | |
| GTAATTCTTAGACTTCCAAA+TGG | + | chr1_4:29572479-29572498 | Msa0159270:CDS | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | + | chr1_4:29572501-29572520 | Msa0159270:CDS | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | + | chr1_4:29572505-29572524 | Msa0159270:CDS | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | + | chr1_4:29572569-29572588 | Msa0159270:CDS | 30.0% |
| !!! | GATTTTTGGTCACAATACAT+TGG | + | chr1_4:29572640-29572659 | Msa0159270:CDS | 30.0% |
| TTCATTGATGAAAGTTGTGA+AGG | + | chr1_4:29572686-29572705 | Msa0159270:CDS | 30.0% | |
| ACATCTCAAAGGAGAAAAAA+CGG | + | chr1_4:29572770-29572789 | Msa0159270:CDS | 30.0% | |
| ! | GACAATTCAAGTTCAAAACT+TGG | - | chr1_4:29572996-29573015 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | - | chr1_4:29573193-29573212 | None:intergenic | 30.0% | |
| ATAGTTATGGTGAATGAAAG+TGG | - | chr1_4:29573431-29573450 | None:intergenic | 30.0% | |
| AAGTAAGAAGGAAAAACCTT+TGG | - | chr1_4:29573462-29573481 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | + | chr1_4:29573552-29573571 | Msa0159270:intron | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | - | chr1_4:29573559-29573578 | None:intergenic | 30.0% | |
| AAATTTGTGGAGTTGACAAA+TGG | + | chr1_4:29574271-29574290 | Msa0159270:CDS | 30.0% | |
| AATTTGTGGAGTTGACAAAT+GGG | + | chr1_4:29574272-29574291 | Msa0159270:CDS | 30.0% | |
| ATTATCAGTCAACAGGATTT+AGG | + | chr1_4:29574323-29574342 | Msa0159270:CDS | 30.0% | |
| GAAGATTGCAAATTGAAGAT+TGG | + | chr1_4:29574373-29574392 | Msa0159270:CDS | 30.0% | |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_4:29572183-29572202 | None:intergenic | 35.0% | |
| ATGATTATTGTCTGTTGCAG+AGG | + | chr1_4:29572408-29572427 | Msa0159270:intron | 35.0% | |
| TGATTATTGTCTGTTGCAGA+GGG | + | chr1_4:29572409-29572428 | Msa0159270:intron | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1_4:29572497-29572516 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_4:29572613-29572632 | Msa0159270:CDS | 35.0% |
| GACAATGTTACTAATAGTGC+TGG | + | chr1_4:29572746-29572765 | Msa0159270:CDS | 35.0% | |
| ACTTACCAAAGTATAGCCAT+GGG | - | chr1_4:29573030-29573049 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | - | chr1_4:29573215-29573234 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_4:29573257-29573276 | Msa0159270:CDS | 35.0% | |
| AACATCACCTTCACTTTCAT+AGG | - | chr1_4:29573293-29573312 | None:intergenic | 35.0% | |
| !! | TTTGGCTTGGGTAATAGTTA+TGG | - | chr1_4:29573444-29573463 | None:intergenic | 35.0% |
| ATAACTATTACCCAAGCCAA+AGG | + | chr1_4:29573443-29573462 | Msa0159270:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_4:29573561-29573580 | Msa0159270:intron | 35.0% | |
| AGTACATACTCGAAAGAACA+TGG | - | chr1_4:29573653-29573672 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAAAGAGCTTCA+TGG | + | chr1_4:29574247-29574266 | Msa0159270:CDS | 35.0% |
| AGAGCTTCATGGAAAATTTG+TGG | + | chr1_4:29574258-29574277 | Msa0159270:CDS | 35.0% | |
| ATTTGTGGAGTTGACAAATG+GGG | + | chr1_4:29574273-29574292 | Msa0159270:CDS | 35.0% | |
| GTGACATATTATCAGTCAAC+AGG | + | chr1_4:29574316-29574335 | Msa0159270:CDS | 35.0% | |
| ! | TGCAGGTTGGCAAAAATTTA+AGG | + | chr1_4:29574351-29574370 | Msa0159270:CDS | 35.0% |
| ACTATCTTCAAGAACTCTTC+TGG | - | chr1_4:29572183-29572202 | None:intergenic | 35.0% | |
| ATGATTATTGTCTGTTGCAG+AGG | + | chr1_4:29572408-29572427 | Msa0159270:intron | 35.0% | |
| TGATTATTGTCTGTTGCAGA+GGG | + | chr1_4:29572409-29572428 | Msa0159270:intron | 35.0% | |
| ! | ATTTCCTTTTGAGCACCATT+TGG | - | chr1_4:29572497-29572516 | None:intergenic | 35.0% |
| ! | TTTAGGTGGCCCATATTTTA+AGG | + | chr1_4:29572613-29572632 | Msa0159270:CDS | 35.0% |
| GACAATGTTACTAATAGTGC+TGG | + | chr1_4:29572746-29572765 | Msa0159270:CDS | 35.0% | |
| ACTTACCAAAGTATAGCCAT+GGG | - | chr1_4:29573030-29573049 | None:intergenic | 35.0% | |
| TATGCTCTTGAAAAGTCACT+TGG | - | chr1_4:29573215-29573234 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | + | chr1_4:29573257-29573276 | Msa0159270:CDS | 35.0% | |
| AACATCACCTTCACTTTCAT+AGG | - | chr1_4:29573293-29573312 | None:intergenic | 35.0% | |
| !! | TTTGGCTTGGGTAATAGTTA+TGG | - | chr1_4:29573444-29573463 | None:intergenic | 35.0% |
| ATAACTATTACCCAAGCCAA+AGG | + | chr1_4:29573443-29573462 | Msa0159270:CDS | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | + | chr1_4:29573561-29573580 | Msa0159270:intron | 35.0% | |
| AGTACATACTCGAAAGAACA+TGG | - | chr1_4:29573653-29573672 | None:intergenic | 35.0% | |
| ! | AAGAAGCATAAAGAGCTTCA+TGG | + | chr1_4:29574247-29574266 | Msa0159270:CDS | 35.0% |
| AGAGCTTCATGGAAAATTTG+TGG | + | chr1_4:29574258-29574277 | Msa0159270:CDS | 35.0% | |
| ATTTGTGGAGTTGACAAATG+GGG | + | chr1_4:29574273-29574292 | Msa0159270:CDS | 35.0% | |
| GTGACATATTATCAGTCAAC+AGG | + | chr1_4:29574316-29574335 | Msa0159270:CDS | 35.0% | |
| ! | TGCAGGTTGGCAAAAATTTA+AGG | + | chr1_4:29574351-29574370 | Msa0159270:CDS | 35.0% |
| ACTTCCAAATGGTGCTCAAA+AGG | + | chr1_4:29572490-29572509 | Msa0159270:CDS | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | + | chr1_4:29572909-29572928 | Msa0159270:intron | 40.0% | |
| ! | GAGAGGAGGTATGATTAAGA+AGG | + | chr1_4:29572926-29572945 | Msa0159270:CDS | 40.0% |
| GACTTACCAAAGTATAGCCA+TGG | - | chr1_4:29573031-29573050 | None:intergenic | 40.0% | |
| GAACATGCCTATGAAAGTGA+AGG | + | chr1_4:29573283-29573302 | Msa0159270:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_4:29573456-29573475 | None:intergenic | 40.0% |
| AGAAGGAAAAACCTTTGGCT+TGG | - | chr1_4:29573457-29573476 | None:intergenic | 40.0% | |
| GATGATATTGGGAAGAGAAG+AGG | + | chr1_4:29573603-29573622 | Msa0159270:CDS | 40.0% | |
| CATTGTGTTTCAGCAGACTT+AGG | + | chr1_4:29574066-29574085 | Msa0159270:intron | 40.0% | |
| ACACGAATCTCGATTGTGAT+CGG | - | chr1_4:29574108-29574127 | None:intergenic | 40.0% | |
| TCGTGTGAATTCTACTTACC+CGG | + | chr1_4:29574122-29574141 | Msa0159270:CDS | 40.0% | |
| TTTGTGGAGTTGACAAATGG+GGG | + | chr1_4:29574274-29574293 | Msa0159270:CDS | 40.0% | |
| TGACAAATGGGGGAAAATCA+TGG | + | chr1_4:29574284-29574303 | Msa0159270:CDS | 40.0% | |
| AAATGGGGGAAAATCATGGT+TGG | + | chr1_4:29574288-29574307 | Msa0159270:CDS | 40.0% | |
| ! | ACAGGATTTAGGTTCTATGC+AGG | + | chr1_4:29574334-29574353 | Msa0159270:CDS | 40.0% |
| ! | GATTTAGGTTCTATGCAGGT+TGG | + | chr1_4:29574338-29574357 | Msa0159270:CDS | 40.0% |
| ACTTCCAAATGGTGCTCAAA+AGG | + | chr1_4:29572490-29572509 | Msa0159270:CDS | 40.0% | |
| TACTTTGCAGGTAGTAAGAG+AGG | + | chr1_4:29572909-29572928 | Msa0159270:intron | 40.0% | |
| ! | GAGAGGAGGTATGATTAAGA+AGG | + | chr1_4:29572926-29572945 | Msa0159270:CDS | 40.0% |
| GACTTACCAAAGTATAGCCA+TGG | - | chr1_4:29573031-29573050 | None:intergenic | 40.0% | |
| GAACATGCCTATGAAAGTGA+AGG | + | chr1_4:29573283-29573302 | Msa0159270:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | - | chr1_4:29573456-29573475 | None:intergenic | 40.0% |
| AGAAGGAAAAACCTTTGGCT+TGG | - | chr1_4:29573457-29573476 | None:intergenic | 40.0% | |
| GATGATATTGGGAAGAGAAG+AGG | + | chr1_4:29573603-29573622 | Msa0159270:CDS | 40.0% | |
| CATTGTGTTTCAGCAGACTT+AGG | + | chr1_4:29574066-29574085 | Msa0159270:intron | 40.0% | |
| ACACGAATCTCGATTGTGAT+CGG | - | chr1_4:29574108-29574127 | None:intergenic | 40.0% | |
| TCGTGTGAATTCTACTTACC+CGG | + | chr1_4:29574122-29574141 | Msa0159270:CDS | 40.0% | |
| TTTGTGGAGTTGACAAATGG+GGG | + | chr1_4:29574274-29574293 | Msa0159270:CDS | 40.0% | |
| TGACAAATGGGGGAAAATCA+TGG | + | chr1_4:29574284-29574303 | Msa0159270:CDS | 40.0% | |
| AAATGGGGGAAAATCATGGT+TGG | + | chr1_4:29574288-29574307 | Msa0159270:CDS | 40.0% | |
| ! | ACAGGATTTAGGTTCTATGC+AGG | + | chr1_4:29574334-29574353 | Msa0159270:CDS | 40.0% |
| ! | GATTTAGGTTCTATGCAGGT+TGG | + | chr1_4:29574338-29574357 | Msa0159270:CDS | 40.0% |
| GAGGGTTCCCAAGAAATTTG+TGG | + | chr1_4:29572427-29572446 | Msa0159270:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+AGG | + | chr1_4:29572515-29572534 | Msa0159270:CDS | 45.0% |
| TGGAGCGTGAAGGTGATATT+TGG | + | chr1_4:29572525-29572544 | Msa0159270:CDS | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_4:29572759-29572778 | Msa0159270:CDS | 45.0% |
| TTTGCAGGTAGTAAGAGAGG+AGG | + | chr1_4:29572912-29572931 | Msa0159270:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | + | chr1_4:29573011-29573030 | Msa0159270:CDS | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | + | chr1_4:29573022-29573041 | Msa0159270:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_4:29573250-29573269 | None:intergenic | 45.0% | |
| AGAACTTGCATTGTGACCAG+TGG | + | chr1_4:29573332-29573351 | Msa0159270:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_4:29573622-29573641 | Msa0159270:CDS | 45.0% |
| TGTGTTTCAGCAGACTTAGG+TGG | + | chr1_4:29574069-29574088 | Msa0159270:intron | 45.0% | |
| GTGAATTCTACTTACCCGGT+AGG | + | chr1_4:29574126-29574145 | Msa0159270:intron | 45.0% | |
| GAGGGTTCCCAAGAAATTTG+TGG | + | chr1_4:29572427-29572446 | Msa0159270:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+AGG | + | chr1_4:29572515-29572534 | Msa0159270:CDS | 45.0% |
| TGGAGCGTGAAGGTGATATT+TGG | + | chr1_4:29572525-29572544 | Msa0159270:CDS | 45.0% | |
| !! | ATAGTGCTGGCACATCTCAA+AGG | + | chr1_4:29572759-29572778 | Msa0159270:CDS | 45.0% |
| TTTGCAGGTAGTAAGAGAGG+AGG | + | chr1_4:29572912-29572931 | Msa0159270:intron | 45.0% | |
| TTGTCACAATCTTACGCCCA+TGG | + | chr1_4:29573011-29573030 | Msa0159270:CDS | 45.0% | |
| TTACGCCCATGGCTATACTT+TGG | + | chr1_4:29573022-29573041 | Msa0159270:CDS | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | - | chr1_4:29573250-29573269 | None:intergenic | 45.0% | |
| AGAACTTGCATTGTGACCAG+TGG | + | chr1_4:29573332-29573351 | Msa0159270:CDS | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | + | chr1_4:29573622-29573641 | Msa0159270:CDS | 45.0% |
| TGTGTTTCAGCAGACTTAGG+TGG | + | chr1_4:29574069-29574088 | Msa0159270:intron | 45.0% | |
| GTGAATTCTACTTACCCGGT+AGG | + | chr1_4:29574126-29574145 | Msa0159270:intron | 45.0% | |
| !!! | TTTTGAATTTATAATAATTT+AGG | + | chr1_4:29573812-29573831 | Msa0159270:intron | 5.0% |
| !! | AAATAATTTATAATTTAAGA+GGG | - | chr1_4:29573867-29573886 | None:intergenic | 5.0% |
| !! | TAAATAATTTATAATTTAAG+AGG | - | chr1_4:29573868-29573887 | None:intergenic | 5.0% |
| !!! | TTTTGAATTTATAATAATTT+AGG | + | chr1_4:29573812-29573831 | Msa0159270:intron | 5.0% |
| !! | AAATAATTTATAATTTAAGA+GGG | - | chr1_4:29573867-29573886 | None:intergenic | 5.0% |
| !! | TAAATAATTTATAATTTAAG+AGG | - | chr1_4:29573868-29573887 | None:intergenic | 5.0% |
| CTTGCATTGTGACCAGTGGT+TGG | + | chr1_4:29573336-29573355 | Msa0159270:CDS | 50.0% | |
| !! | GGGAAGAGAAGAGGCATTGA+AGG | + | chr1_4:29573612-29573631 | Msa0159270:CDS | 50.0% |
| CTTGCATTGTGACCAGTGGT+TGG | + | chr1_4:29573336-29573355 | Msa0159270:CDS | 50.0% | |
| !! | GGGAAGAGAAGAGGCATTGA+AGG | + | chr1_4:29573612-29573631 | Msa0159270:CDS | 50.0% |
| GGCAAATGGCTTCCAACCAC+TGG | - | chr1_4:29573351-29573370 | None:intergenic | 55.0% | |
| GGCAAATGGCTTCCAACCAC+TGG | - | chr1_4:29573351-29573370 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 29572165 | 29574474 | 29572165 | ID=Msa0159270;Name=Msa0159270 |
| chr1_4 | mRNA | 29572165 | 29574474 | 29572165 | ID=Msa0159270-mRNA-1;Parent=Msa0159270;Name=Msa0159270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|7|0|417 |
| chr1_4 | exon | 29572165 | 29572233 | 29572165 | ID=Msa0159270-mRNA-1:exon:9512;Parent=Msa0159270-mRNA-1 |
| chr1_4 | exon | 29572428 | 29572824 | 29572428 | ID=Msa0159270-mRNA-1:exon:9513;Parent=Msa0159270-mRNA-1 |
| chr1_4 | exon | 29572919 | 29573043 | 29572919 | ID=Msa0159270-mRNA-1:exon:9514;Parent=Msa0159270-mRNA-1 |
| chr1_4 | exon | 29573206 | 29573464 | 29573206 | ID=Msa0159270-mRNA-1:exon:9515;Parent=Msa0159270-mRNA-1 |
| chr1_4 | exon | 29573574 | 29573663 | 29573574 | ID=Msa0159270-mRNA-1:exon:9516;Parent=Msa0159270-mRNA-1 |
| chr1_4 | exon | 29574079 | 29574143 | 29574079 | ID=Msa0159270-mRNA-1:exon:9517;Parent=Msa0159270-mRNA-1 |
| chr1_4 | exon | 29574226 | 29574474 | 29574226 | ID=Msa0159270-mRNA-1:exon:9518;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29572165 | 29572233 | 29572165 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29572428 | 29572824 | 29572428 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29572919 | 29573043 | 29572919 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29573206 | 29573464 | 29573206 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29573574 | 29573663 | 29573574 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29574079 | 29574143 | 29574079 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| chr1_4 | CDS | 29574226 | 29574474 | 29574226 | ID=Msa0159270-mRNA-1:cds;Parent=Msa0159270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
