Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159280 | sp|Q84R27|Y3896_ARATH | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 7.49e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159280 | A0A396JU70 | 90.705 | 312 | 28 | 1 | 1 | 312 | 1 | 311 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0159280 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159280 | MtrunA17_Chr1g0163221 | 90.705 | 312 | 28 | 1 | 1 | 312 | 1 | 311 | 0.0 | 540 |
| Msa0159280 | MtrunA17_Chr4g0067431 | 64.329 | 328 | 89 | 7 | 1 | 304 | 1 | 324 | 6.86e-141 | 400 |
| Msa0159280 | MtrunA17_Chr6g0467351 | 59.664 | 238 | 71 | 4 | 1 | 220 | 1 | 231 | 7.76e-94 | 278 |
| Msa0159280 | MtrunA17_Chr1g0163061 | 51.321 | 265 | 65 | 4 | 1 | 201 | 1 | 265 | 5.11e-67 | 211 |
| Msa0159280 | MtrunA17_Chr1g0163131 | 31.373 | 306 | 171 | 11 | 3 | 284 | 10 | 300 | 1.71e-33 | 125 |
| Msa0159280 | MtrunA17_Chr1g0163071 | 28.526 | 312 | 175 | 9 | 27 | 304 | 2 | 299 | 2.25e-30 | 116 |
| Msa0159280 | MtrunA17_Chr6g0467361 | 66.292 | 89 | 26 | 3 | 214 | 299 | 7 | 94 | 1.26e-29 | 108 |
| Msa0159280 | MtrunA17_Chr1g0163181 | 29.452 | 292 | 181 | 11 | 15 | 290 | 9 | 291 | 3.59e-29 | 115 |
| Msa0159280 | MtrunA17_Chr3g0131891 | 28.966 | 290 | 195 | 7 | 9 | 291 | 17 | 302 | 3.75e-29 | 114 |
| Msa0159280 | MtrunA17_Chr3g0103181 | 29.010 | 293 | 175 | 10 | 9 | 291 | 10 | 279 | 3.78e-29 | 112 |
| Msa0159280 | MtrunA17_Chr1g0163251 | 30.033 | 303 | 195 | 10 | 20 | 316 | 14 | 305 | 1.77e-28 | 113 |
| Msa0159280 | MtrunA17_Chr7g0233561 | 29.021 | 286 | 183 | 8 | 9 | 277 | 16 | 298 | 2.27e-28 | 112 |
| Msa0159280 | MtrunA17_Chr1g0163231 | 28.674 | 279 | 169 | 7 | 11 | 279 | 9 | 267 | 7.42e-28 | 109 |
| Msa0159280 | MtrunA17_Chr1g0163261 | 29.371 | 286 | 183 | 9 | 11 | 290 | 9 | 281 | 1.18e-27 | 109 |
| Msa0159280 | MtrunA17_Chr1g0208771 | 25.862 | 290 | 187 | 8 | 27 | 296 | 13 | 294 | 2.89e-27 | 110 |
| Msa0159280 | MtrunA17_Chr8g0390841 | 26.452 | 310 | 203 | 10 | 9 | 300 | 37 | 339 | 6.78e-27 | 110 |
| Msa0159280 | MtrunA17_Chr1g0163201 | 29.537 | 281 | 169 | 9 | 27 | 285 | 19 | 292 | 4.66e-25 | 103 |
| Msa0159280 | MtrunA17_Chr3g0103171 | 28.832 | 274 | 172 | 8 | 27 | 291 | 6 | 265 | 5.24e-25 | 101 |
| Msa0159280 | MtrunA17_Chr3g0103191 | 28.689 | 244 | 151 | 8 | 9 | 246 | 10 | 236 | 1.28e-24 | 100 |
| Msa0159280 | MtrunA17_Chr7g0233521 | 28.626 | 262 | 162 | 7 | 27 | 277 | 2 | 249 | 4.34e-23 | 96.7 |
| Msa0159280 | MtrunA17_Chr7g0233541 | 29.368 | 269 | 168 | 8 | 27 | 277 | 2 | 266 | 1.53e-22 | 95.5 |
| Msa0159280 | MtrunA17_Chr1g0171611 | 26.182 | 275 | 169 | 7 | 11 | 279 | 9 | 255 | 8.41e-22 | 93.2 |
| Msa0159280 | MtrunA17_Chr3g0103151 | 38.000 | 150 | 81 | 7 | 9 | 149 | 10 | 156 | 1.17e-21 | 89.7 |
| Msa0159280 | MtrunA17_Chr7g0233571 | 39.130 | 115 | 69 | 1 | 9 | 123 | 8 | 121 | 1.89e-20 | 88.2 |
| Msa0159280 | MtrunA17_Chr5g0419201 | 35.329 | 167 | 85 | 6 | 11 | 155 | 16 | 181 | 2.71e-20 | 86.7 |
| Msa0159280 | MtrunA17_Chr7g0233531 | 27.308 | 260 | 168 | 6 | 27 | 277 | 2 | 249 | 4.59e-20 | 88.2 |
| Msa0159280 | MtrunA17_Chr1g0163101 | 34.043 | 141 | 78 | 4 | 6 | 135 | 12 | 148 | 6.87e-20 | 85.5 |
| Msa0159280 | MtrunA17_Chr1g0154161 | 25.796 | 314 | 177 | 13 | 9 | 296 | 28 | 311 | 1.01e-18 | 85.1 |
| Msa0159280 | MtrunA17_Chr1g0163121 | 35.659 | 129 | 69 | 4 | 25 | 143 | 9 | 133 | 5.14e-18 | 79.3 |
| Msa0159280 | MtrunA17_Chr1g0154131 | 26.351 | 296 | 170 | 13 | 9 | 277 | 182 | 456 | 1.15e-17 | 83.2 |
| Msa0159280 | MtrunA17_Chr6g0476181 | 40.171 | 117 | 62 | 5 | 27 | 140 | 2 | 113 | 4.82e-17 | 77.0 |
| Msa0159280 | MtrunA17_Chr1g0163081 | 31.544 | 149 | 79 | 5 | 27 | 165 | 6 | 141 | 1.33e-16 | 75.5 |
| Msa0159280 | MtrunA17_Chr3g0077411 | 24.407 | 295 | 153 | 9 | 2 | 289 | 16 | 247 | 7.87e-16 | 77.8 |
| Msa0159280 | MtrunA17_Chr3g0077411 | 25.694 | 288 | 182 | 10 | 9 | 293 | 260 | 518 | 2.08e-13 | 70.5 |
| Msa0159280 | MtrunA17_Chr1g0163191 | 40.196 | 102 | 58 | 2 | 20 | 121 | 14 | 112 | 1.30e-15 | 73.2 |
| Msa0159280 | MtrunA17_Chr1g0162161 | 36.242 | 149 | 77 | 7 | 27 | 165 | 4 | 144 | 4.67e-15 | 71.6 |
| Msa0159280 | MtrunA17_Chr1g0163241 | 33.929 | 112 | 71 | 2 | 27 | 138 | 23 | 131 | 1.43e-14 | 70.5 |
| Msa0159280 | MtrunA17_Chr5g0429931 | 27.509 | 269 | 153 | 10 | 27 | 291 | 11 | 241 | 1.62e-14 | 72.0 |
| Msa0159280 | MtrunA17_Chr1g0154191 | 24.169 | 331 | 181 | 15 | 9 | 277 | 20 | 342 | 2.99e-14 | 72.8 |
| Msa0159280 | MtrunA17_Chr3g0103201 | 28.326 | 233 | 140 | 9 | 70 | 291 | 4 | 220 | 3.64e-14 | 70.5 |
| Msa0159280 | MtrunA17_Chr3g0077451 | 25.540 | 278 | 142 | 11 | 25 | 291 | 10 | 233 | 5.10e-14 | 70.5 |
| Msa0159280 | MtrunA17_Chr3g0077461 | 29.775 | 178 | 112 | 4 | 10 | 175 | 236 | 412 | 4.96e-13 | 69.3 |
| Msa0159280 | MtrunA17_Chr1g0154151 | 27.083 | 288 | 169 | 12 | 26 | 277 | 19 | 301 | 5.81e-13 | 68.6 |
| Msa0159280 | MtrunA17_Chr1g0154171 | 24.138 | 319 | 184 | 13 | 9 | 277 | 21 | 331 | 6.17e-12 | 65.9 |
| Msa0159280 | MtrunA17_Chr1g0163141 | 34.653 | 101 | 62 | 2 | 25 | 125 | 9 | 105 | 6.48e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159280 | AT3G18990.2 | 25.723 | 346 | 190 | 11 | 11 | 298 | 6 | 342 | 8.80e-21 | 92.0 |
| Msa0159280 | AT3G18990.1 | 25.602 | 332 | 181 | 10 | 11 | 284 | 6 | 329 | 9.97e-21 | 91.3 |
| Msa0159280 | AT3G18960.1 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 7.61e-15 | 72.8 |
| Msa0159280 | AT3G18960.2 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 7.96e-15 | 72.4 |
| Msa0159280 | AT4G33280.1 | 23.549 | 293 | 187 | 6 | 24 | 291 | 36 | 316 | 4.68e-14 | 72.4 |
| Msa0159280 | AT1G49475.1 | 35.135 | 111 | 70 | 2 | 11 | 121 | 34 | 142 | 1.20e-13 | 68.9 |
| Msa0159280 | AT4G01580.1 | 32.673 | 101 | 67 | 1 | 11 | 111 | 30 | 129 | 1.57e-13 | 68.6 |
| Msa0159280 | AT3G18960.3 | 35.294 | 85 | 54 | 1 | 27 | 111 | 9 | 92 | 7.93e-11 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACCTTAGAGTAAT+TGG | 0.167691 | 1_4:-29604039 | None:intergenic |
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_4:-29604976 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_4:+29605061 | Msa0159280:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_4:-29604626 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1_4:-29605172 | None:intergenic |
| CTTCGTCATCACGGGGTAAA+AGG | 0.257683 | 1_4:+29604310 | Msa0159280:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_4:+29604530 | Msa0159280:CDS |
| TTCTTACAAACTTTCTTAGA+TGG | 0.309453 | 1_4:-29604348 | None:intergenic |
| GTCTTTAATGTGATTGTATT+CGG | 0.330391 | 1_4:+29604198 | Msa0159280:CDS |
| TAACAAACCCAATTACTCTA+AGG | 0.340216 | 1_4:+29604031 | Msa0159280:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_4:-29605057 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_4:-29605127 | None:intergenic |
| TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1_4:+29605144 | Msa0159280:CDS |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_4:-29604920 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_4:-29604245 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1_4:+29604925 | Msa0159280:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_4:-29604246 | None:intergenic |
| TTGGAAACCTTAGAGTAATT+GGG | 0.442652 | 1_4:-29604038 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 1_4:+29604302 | Msa0159280:CDS |
| TACTCTAAGGTTTCCAAACA+TGG | 0.467994 | 1_4:+29604044 | Msa0159280:CDS |
| TATATTTGATTAGTGTCCAT+CGG | 0.520813 | 1_4:+29605191 | Msa0159280:CDS |
| TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 1_4:+29604301 | Msa0159280:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_4:+29604241 | Msa0159280:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1_4:+29604635 | Msa0159280:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_4:+29604006 | Msa0159280:CDS |
| CATATTAAATGAATTTCCGA+TGG | 0.570683 | 1_4:-29605207 | None:intergenic |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_4:+29605026 | Msa0159280:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_4:+29604242 | Msa0159280:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1_4:+29604934 | Msa0159280:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_4:+29605022 | Msa0159280:CDS |
| GTGATTGTATTCGGTAGATG+CGG | 0.604317 | 1_4:+29604207 | Msa0159280:CDS |
| ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1_4:+29603575 | Msa0159280:CDS |
| ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1_4:-29603573 | None:intergenic |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1_4:+29604938 | Msa0159280:CDS |
| TCTAAGGTTTCCAAACATGG+TGG | 0.644869 | 1_4:+29604047 | Msa0159280:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_4:+29604405 | Msa0159280:CDS |
| GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 1_4:+29604303 | Msa0159280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_4:29604484-29604503 | Msa0159280:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_4:29605175-29605194 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_4:29604484-29604503 | Msa0159280:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_4:29605175-29605194 | None:intergenic | 15.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1_4:29603676-29603695 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1_4:29603693-29603712 | Msa0159280:intron | 20.0% |
| !! | AATAATGATTGTTCGAATAT+CGG | + | chr1_4:29603833-29603852 | Msa0159280:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_4:29604152-29604171 | Msa0159280:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_4:29604507-29604526 | Msa0159280:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_4:29604768-29604787 | Msa0159280:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_4:29604892-29604911 | Msa0159280:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_4:29604978-29604997 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_4:29604979-29604998 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_4:29604978-29604997 | Msa0159280:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_4:29605060-29605079 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_4:29605061-29605080 | Msa0159280:CDS | 20.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1_4:29603676-29603695 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1_4:29603693-29603712 | Msa0159280:intron | 20.0% |
| !! | AATAATGATTGTTCGAATAT+CGG | + | chr1_4:29603833-29603852 | Msa0159280:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_4:29604152-29604171 | Msa0159280:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_4:29604507-29604526 | Msa0159280:intron | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_4:29604768-29604787 | Msa0159280:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_4:29604892-29604911 | Msa0159280:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_4:29604978-29604997 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_4:29604979-29604998 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_4:29604978-29604997 | Msa0159280:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_4:29605060-29605079 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_4:29605061-29605080 | Msa0159280:CDS | 20.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_4:29604000-29604019 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_4:29604001-29604020 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_4:29604001-29604020 | Msa0159280:CDS | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1_4:29604102-29604121 | Msa0159280:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_4:29604198-29604217 | Msa0159280:CDS | 25.0% |
| ! | TTCTTACAAACTTTCTTAGA+TGG | - | chr1_4:29604351-29604370 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_4:29604530-29604549 | Msa0159280:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_4:29604721-29604740 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_4:29604718-29604737 | Msa0159280:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_4:29604734-29604753 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_4:29604923-29604942 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_4:29604925-29604944 | Msa0159280:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_4:29605130-29605149 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_4:29605132-29605151 | Msa0159280:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_4:29605138-29605157 | Msa0159280:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_4:29605191-29605210 | Msa0159280:CDS | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_4:29604000-29604019 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_4:29604001-29604020 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_4:29604001-29604020 | Msa0159280:CDS | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1_4:29604102-29604121 | Msa0159280:CDS | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_4:29604198-29604217 | Msa0159280:CDS | 25.0% |
| ! | TTCTTACAAACTTTCTTAGA+TGG | - | chr1_4:29604351-29604370 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_4:29604530-29604549 | Msa0159280:CDS | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_4:29604721-29604740 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_4:29604718-29604737 | Msa0159280:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_4:29604734-29604753 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_4:29604923-29604942 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_4:29604925-29604944 | Msa0159280:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_4:29605130-29605149 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_4:29605132-29605151 | Msa0159280:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_4:29605138-29605157 | Msa0159280:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1_4:29605191-29605210 | Msa0159280:CDS | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_4:29603592-29603611 | Msa0159280:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_4:29603604-29603623 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_4:29603633-29603652 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_4:29603634-29603653 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_4:29604006-29604025 | Msa0159280:CDS | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | + | chr1_4:29604031-29604050 | Msa0159280:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | chr1_4:29604041-29604060 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | chr1_4:29604042-29604061 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_4:29604064-29604083 | Msa0159280:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_4:29604065-29604084 | Msa0159280:CDS | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_4:29604106-29604125 | Msa0159280:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_4:29604575-29604594 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_4:29604584-29604603 | Msa0159280:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_4:29604629-29604648 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_4:29605091-29605110 | Msa0159280:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_4:29605163-29605182 | Msa0159280:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_4:29603592-29603611 | Msa0159280:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_4:29603604-29603623 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_4:29603633-29603652 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_4:29603634-29603653 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_4:29604006-29604025 | Msa0159280:CDS | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | + | chr1_4:29604031-29604050 | Msa0159280:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | chr1_4:29604041-29604060 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | chr1_4:29604042-29604061 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_4:29604064-29604083 | Msa0159280:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_4:29604065-29604084 | Msa0159280:CDS | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_4:29604106-29604125 | Msa0159280:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_4:29604575-29604594 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_4:29604584-29604603 | Msa0159280:CDS | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_4:29604629-29604648 | None:intergenic | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_4:29605091-29605110 | Msa0159280:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_4:29605163-29605182 | Msa0159280:CDS | 30.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1_4:29603575-29603594 | Msa0159280:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_4:29603628-29603647 | Msa0159280:CDS | 35.0% | |
| AATGATTGTTCGAATATCGG+TGG | + | chr1_4:29603836-29603855 | Msa0159280:intron | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_4:29603995-29604014 | Msa0159280:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1_4:29604044-29604063 | Msa0159280:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1_4:29604060-29604079 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_4:29604635-29604654 | Msa0159280:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_4:29604782-29604801 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_4:29604779-29604798 | Msa0159280:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_4:29604934-29604953 | Msa0159280:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_4:29605022-29605041 | Msa0159280:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_4:29605144-29605163 | Msa0159280:CDS | 35.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1_4:29603575-29603594 | Msa0159280:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_4:29603628-29603647 | Msa0159280:CDS | 35.0% | |
| AATGATTGTTCGAATATCGG+TGG | + | chr1_4:29603836-29603855 | Msa0159280:intron | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_4:29603995-29604014 | Msa0159280:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1_4:29604044-29604063 | Msa0159280:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1_4:29604060-29604079 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_4:29604635-29604654 | Msa0159280:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_4:29604782-29604801 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_4:29604779-29604798 | Msa0159280:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_4:29604934-29604953 | Msa0159280:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_4:29605022-29605041 | Msa0159280:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_4:29605144-29605163 | Msa0159280:CDS | 35.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1_4:29604047-29604066 | Msa0159280:CDS | 40.0% |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_4:29604207-29604226 | Msa0159280:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_4:29604241-29604260 | Msa0159280:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_4:29604242-29604261 | Msa0159280:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_4:29604249-29604268 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1_4:29604301-29604320 | Msa0159280:CDS | 40.0% | |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_4:29604938-29604957 | Msa0159280:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_4:29605026-29605045 | Msa0159280:CDS | 40.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1_4:29604047-29604066 | Msa0159280:CDS | 40.0% |
| GTGATTGTATTCGGTAGATG+CGG | + | chr1_4:29604207-29604226 | Msa0159280:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_4:29604241-29604260 | Msa0159280:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_4:29604242-29604261 | Msa0159280:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_4:29604249-29604268 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1_4:29604301-29604320 | Msa0159280:CDS | 40.0% | |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_4:29604938-29604957 | Msa0159280:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_4:29605026-29605045 | Msa0159280:CDS | 40.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_4:29604248-29604267 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1_4:29604302-29604321 | Msa0159280:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_4:29604405-29604424 | Msa0159280:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_4:29604409-29604428 | Msa0159280:intron | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_4:29604248-29604267 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1_4:29604302-29604321 | Msa0159280:CDS | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_4:29604405-29604424 | Msa0159280:CDS | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_4:29604409-29604428 | Msa0159280:intron | 45.0% | |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1_4:29604303-29604322 | Msa0159280:CDS | 50.0% | |
| !! | CTTTTACCCCGTGATGACGA+AGG | - | chr1_4:29604312-29604331 | None:intergenic | 50.0% |
| CTTCGTCATCACGGGGTAAA+AGG | + | chr1_4:29604310-29604329 | Msa0159280:CDS | 50.0% | |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1_4:29604303-29604322 | Msa0159280:CDS | 50.0% | |
| !! | CTTTTACCCCGTGATGACGA+AGG | - | chr1_4:29604312-29604331 | None:intergenic | 50.0% |
| CTTCGTCATCACGGGGTAAA+AGG | + | chr1_4:29604310-29604329 | Msa0159280:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 29603575 | 29605225 | 29603575 | ID=Msa0159280;Name=Msa0159280 |
| chr1_4 | mRNA | 29603575 | 29605225 | 29603575 | ID=Msa0159280-mRNA-1;Parent=Msa0159280;Name=Msa0159280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|316 |
| chr1_4 | exon | 29603575 | 29603649 | 29603575 | ID=Msa0159280-mRNA-1:exon:9519;Parent=Msa0159280-mRNA-1 |
| chr1_4 | exon | 29603991 | 29604426 | 29603991 | ID=Msa0159280-mRNA-1:exon:9520;Parent=Msa0159280-mRNA-1 |
| chr1_4 | exon | 29604529 | 29604656 | 29604529 | ID=Msa0159280-mRNA-1:exon:9521;Parent=Msa0159280-mRNA-1 |
| chr1_4 | exon | 29604914 | 29605225 | 29604914 | ID=Msa0159280-mRNA-1:exon:9522;Parent=Msa0159280-mRNA-1 |
| chr1_4 | CDS | 29603575 | 29603649 | 29603575 | ID=Msa0159280-mRNA-1:cds;Parent=Msa0159280-mRNA-1 |
| chr1_4 | CDS | 29603991 | 29604426 | 29603991 | ID=Msa0159280-mRNA-1:cds;Parent=Msa0159280-mRNA-1 |
| chr1_4 | CDS | 29604529 | 29604656 | 29604529 | ID=Msa0159280-mRNA-1:cds;Parent=Msa0159280-mRNA-1 |
| chr1_4 | CDS | 29604914 | 29605225 | 29604914 | ID=Msa0159280-mRNA-1:cds;Parent=Msa0159280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
