Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159300 | KEH26464.1 | 67.527 | 465 | 89 | 5 | 8 | 411 | 7 | 470 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159300 | A0A072U9K2 | 67.527 | 465 | 89 | 5 | 8 | 411 | 7 | 470 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0159300 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159300 | MtrunA17_Chr6g0476171 | 63.958 | 283 | 54 | 4 | 138 | 411 | 2 | 245 | 3.72e-119 | 346 |
| Msa0159300 | MtrunA17_Chr1g0163181 | 33.787 | 441 | 210 | 15 | 28 | 411 | 14 | 429 | 2.69e-60 | 202 |
| Msa0159300 | MtrunA17_Chr1g0163131 | 39.032 | 310 | 136 | 6 | 1 | 261 | 1 | 306 | 6.69e-59 | 194 |
| Msa0159300 | MtrunA17_Chr1g0163131 | 43.182 | 88 | 48 | 1 | 324 | 411 | 221 | 306 | 1.54e-14 | 73.9 |
| Msa0159300 | MtrunA17_Chr1g0163101 | 57.831 | 166 | 34 | 3 | 6 | 137 | 6 | 169 | 5.94e-55 | 180 |
| Msa0159300 | MtrunA17_Chr1g0163201 | 31.100 | 418 | 203 | 10 | 35 | 411 | 19 | 392 | 6.91e-53 | 181 |
| Msa0159300 | MtrunA17_Chr6g0476181 | 59.868 | 152 | 13 | 1 | 34 | 137 | 1 | 152 | 1.47e-51 | 170 |
| Msa0159300 | MtrunA17_Chr1g0163261 | 39.322 | 295 | 130 | 10 | 19 | 273 | 9 | 294 | 3.49e-50 | 171 |
| Msa0159300 | MtrunA17_Chr1g0163231 | 38.267 | 277 | 120 | 7 | 23 | 260 | 13 | 277 | 1.75e-45 | 159 |
| Msa0159300 | MtrunA17_Chr1g0163141 | 53.086 | 162 | 21 | 3 | 31 | 137 | 7 | 168 | 8.31e-45 | 153 |
| Msa0159300 | MtrunA17_Chr1g0163251 | 37.234 | 282 | 137 | 7 | 28 | 273 | 14 | 291 | 2.76e-44 | 158 |
| Msa0159300 | MtrunA17_Chr1g0162161 | 57.143 | 140 | 24 | 2 | 34 | 137 | 3 | 142 | 9.36e-44 | 150 |
| Msa0159300 | MtrunA17_Chr1g0171611 | 36.822 | 258 | 138 | 6 | 23 | 260 | 13 | 265 | 4.73e-42 | 149 |
| Msa0159300 | MtrunA17_Chr1g0163111 | 36.508 | 252 | 118 | 10 | 167 | 411 | 12 | 228 | 5.42e-39 | 140 |
| Msa0159300 | MtrunA17_Chr1g0163151 | 32.812 | 256 | 122 | 6 | 162 | 411 | 10 | 221 | 2.24e-35 | 130 |
| Msa0159300 | MtrunA17_Chr1g0163081 | 52.239 | 134 | 31 | 3 | 34 | 135 | 5 | 137 | 7.47e-35 | 126 |
| Msa0159300 | MtrunA17_Chr1g0163121 | 50.000 | 130 | 40 | 2 | 33 | 137 | 9 | 138 | 9.24e-34 | 123 |
| Msa0159300 | MtrunA17_Chr1g0163161 | 49.219 | 128 | 27 | 3 | 47 | 137 | 1 | 127 | 2.22e-29 | 111 |
| Msa0159300 | MtrunA17_Chr1g0162151 | 32.411 | 253 | 90 | 8 | 170 | 410 | 23 | 206 | 2.40e-29 | 114 |
| Msa0159300 | MtrunA17_Chr1g0163091 | 44.275 | 131 | 64 | 4 | 150 | 273 | 2 | 130 | 2.92e-26 | 103 |
| Msa0159300 | MtrunA17_Chr1g0163221 | 24.172 | 302 | 184 | 7 | 13 | 273 | 5 | 302 | 1.75e-21 | 95.1 |
| Msa0159300 | MtrunA17_Chr3g0131891 | 27.891 | 294 | 169 | 10 | 13 | 264 | 13 | 305 | 8.45e-21 | 92.8 |
| Msa0159300 | MtrunA17_Chr7g0233561 | 26.645 | 304 | 172 | 9 | 12 | 264 | 11 | 314 | 3.23e-19 | 88.2 |
| Msa0159300 | MtrunA17_Chr7g0233531 | 26.978 | 278 | 143 | 9 | 34 | 264 | 1 | 265 | 3.49e-19 | 87.0 |
| Msa0159300 | MtrunA17_Chr7g0233521 | 28.571 | 266 | 154 | 8 | 34 | 264 | 1 | 265 | 2.04e-18 | 84.7 |
| Msa0159300 | MtrunA17_Chr7g0233541 | 26.950 | 282 | 155 | 8 | 34 | 264 | 1 | 282 | 3.08e-18 | 84.7 |
| Msa0159300 | MtrunA17_Chr4g0067431 | 23.676 | 321 | 187 | 11 | 9 | 273 | 5 | 323 | 3.49e-17 | 82.0 |
| Msa0159300 | MtrunA17_Chr1g0163241 | 33.333 | 147 | 84 | 4 | 35 | 172 | 23 | 164 | 5.22e-16 | 75.5 |
| Msa0159300 | MtrunA17_Chr1g0163191 | 36.842 | 95 | 59 | 1 | 28 | 121 | 14 | 108 | 4.69e-15 | 72.4 |
| Msa0159300 | MtrunA17_Chr5g0419211 | 36.957 | 92 | 57 | 1 | 182 | 273 | 11 | 101 | 6.11e-14 | 67.8 |
| Msa0159300 | MtrunA17_Chr3g0077411 | 23.954 | 263 | 178 | 9 | 15 | 260 | 258 | 515 | 1.42e-13 | 72.4 |
| Msa0159300 | MtrunA17_Chr6g0467351 | 38.202 | 89 | 51 | 3 | 16 | 100 | 12 | 100 | 1.01e-11 | 64.3 |
| Msa0159300 | MtrunA17_Chr5g0419201 | 34.884 | 86 | 53 | 2 | 19 | 101 | 16 | 101 | 1.34e-11 | 63.2 |
| Msa0159300 | MtrunA17_Chr5g0429931 | 23.830 | 235 | 167 | 8 | 35 | 261 | 11 | 241 | 2.54e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACCCATTTGGAAGTTTA+AGG | 0.139491 | 1_4:+29723183 | None:intergenic |
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_4:-29720140 | Msa0159300:CDS |
| GAATTTACATGAGATGTTTA+AGG | 0.185675 | 1_4:-29719966 | Msa0159300:CDS |
| TTTGGAAGTTTAAGGGATAT+TGG | 0.281020 | 1_4:+29723191 | None:intergenic |
| TGCAACGCGGTGATGGTATT+TGG | 0.284893 | 1_4:-29723142 | Msa0159300:CDS |
| AGTTTAAGGGATATTGGATT+TGG | 0.337634 | 1_4:+29723197 | None:intergenic |
| CTCCGGGCCTGGTTCCTTTG+TGG | 0.344484 | 1_4:+29721689 | None:intergenic |
| GGAATTTCGTAGAGAGGTAT+TGG | 0.365580 | 1_4:-29723229 | Msa0159300:CDS |
| TTATCACCTTCAACATGATA+TGG | 0.368518 | 1_4:+29722352 | None:intergenic |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_4:-29719810 | Msa0159300:CDS |
| GGCCTGGTTCCTTTGTGGTT+GGG | 0.379936 | 1_4:+29721694 | None:intergenic |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_4:+29723063 | None:intergenic |
| ATGGTATTTGGCTTCAGAAT+TGG | 0.387348 | 1_4:-29723130 | Msa0159300:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.388378 | 1_4:-29719735 | Msa0159300:CDS |
| GGGCCTGGTTCCTTTGTGGT+TGG | 0.394485 | 1_4:+29721693 | None:intergenic |
| GGTCAGCATGCAAAATGAAT+TGG | 0.396575 | 1_4:-29723166 | Msa0159300:CDS |
| TGACCCATTTGGAAGTTTAA+GGG | 0.399923 | 1_4:+29723184 | None:intergenic |
| CCTTGAAACTTCTCCGGGCC+TGG | 0.411612 | 1_4:+29721678 | None:intergenic |
| GACAACACCAGTAAAAGATA+TGG | 0.416359 | 1_4:-29720159 | Msa0159300:CDS |
| AACCACAAAGGAACCAGGCC+CGG | 0.431169 | 1_4:-29721691 | Msa0159300:CDS |
| ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1_4:-29719785 | Msa0159300:CDS |
| ATATCCCTTAAACTTCCAAA+TGG | 0.449227 | 1_4:-29723188 | Msa0159300:CDS |
| TGGAGACACTTGCTTGTTTG+AGG | 0.451137 | 1_4:-29719661 | Msa0159300:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_4:-29721875 | Msa0159300:CDS |
| GCAATACCTTGAAACTTCTC+CGG | 0.461040 | 1_4:+29721672 | None:intergenic |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_4:+29719825 | None:intergenic |
| ATAGTAATTGTGAATGAAAG+TGG | 0.468831 | 1_4:+29721720 | None:intergenic |
| GACTATGGTTGGTTCACTAA+AGG | 0.474605 | 1_4:-29719720 | Msa0159300:CDS |
| TACCTCTCTACGAAATTCCT+TGG | 0.476007 | 1_4:+29723233 | None:intergenic |
| AAGGAACATGAGTTGAAAGT+TGG | 0.478819 | 1_4:-29721777 | Msa0159300:CDS |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_4:-29719773 | Msa0159300:CDS |
| AGTGAAACTAGGACTCTCAT+TGG | 0.512039 | 1_4:+29722387 | None:intergenic |
| AGTAGCAATGCCATTTGAGT+TGG | 0.513443 | 1_4:+29722851 | None:intergenic |
| TTCGAAAACCAACTAGGTAT+CGG | 0.513588 | 1_4:+29721936 | None:intergenic |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.515563 | 1_4:-29719681 | Msa0159300:CDS |
| AATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1_4:-29719786 | Msa0159300:CDS |
| TAATGGAAACACAGGAGGCA+TGG | 0.520474 | 1_4:-29722467 | Msa0159300:CDS |
| TATCCCTTAAACTTCCAAAT+GGG | 0.521322 | 1_4:-29723187 | Msa0159300:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_4:-29719631 | Msa0159300:CDS |
| TATTCTTTCGAAAACCAACT+AGG | 0.522446 | 1_4:+29721930 | None:intergenic |
| CCAGGCCCGGAGAAGTTTCA+AGG | 0.523708 | 1_4:-29721678 | Msa0159300:intron |
| CAATACCTTGAAACTTCTCC+GGG | 0.525380 | 1_4:+29721673 | None:intergenic |
| TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1_4:-29719784 | Msa0159300:CDS |
| TGAAACAGCCGATACCTAGT+TGG | 0.537742 | 1_4:-29721944 | Msa0159300:intron |
| AAGGCAACAATTAGAAGTGT+TGG | 0.542696 | 1_4:-29721885 | Msa0159300:CDS |
| AATGGAAACACAGGAGGCAT+GGG | 0.543418 | 1_4:-29722466 | Msa0159300:CDS |
| TACATGAATGAGTTATTGCA+AGG | 0.543984 | 1_4:-29721909 | Msa0159300:CDS |
| ATGAACATCTCGACTATGGT+TGG | 0.544359 | 1_4:-29719731 | Msa0159300:CDS |
| GTCAGCATGCAAAATGAATT+GGG | 0.544595 | 1_4:-29723165 | Msa0159300:CDS |
| GTGAAACTAGGACTCTCATT+GGG | 0.547777 | 1_4:+29722388 | None:intergenic |
| TATATTTAGTGGAAATTCAG+TGG | 0.549056 | 1_4:-29719799 | Msa0159300:CDS |
| ACTACTGCTGCTACACCTCA+AGG | 0.557213 | 1_4:-29722831 | Msa0159300:CDS |
| ATCCCAACCACAAAGGAACC+AGG | 0.559337 | 1_4:-29721696 | Msa0159300:CDS |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_4:-29721874 | Msa0159300:CDS |
| TTTGGCTTCAGAATTGGAAG+AGG | 0.566576 | 1_4:-29723124 | Msa0159300:CDS |
| GATAATTTGACAGTGAAACT+AGG | 0.566923 | 1_4:+29722376 | None:intergenic |
| GTAAAAGATATGGAATATGC+GGG | 0.570556 | 1_4:-29720149 | Msa0159300:CDS |
| AGAATTGGAAGAGGTTTGCA+TGG | 0.571811 | 1_4:-29723115 | Msa0159300:CDS |
| ATGGTTGGTTCACTAAAGGT+TGG | 0.573713 | 1_4:-29719716 | Msa0159300:CDS |
| TTGTGAATGTTAGTCCCTTG+AGG | 0.580089 | 1_4:+29722816 | None:intergenic |
| AATTGGGTGCAACGCGGTGA+TGG | 0.587564 | 1_4:-29723149 | Msa0159300:CDS |
| TGTGCTTGCAGATGATTCCA+AGG | 0.587783 | 1_4:-29723250 | Msa0159300:intron |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_4:-29722475 | Msa0159300:intron |
| AACAATTAGAAGTGTTGGTG+AGG | 0.601806 | 1_4:-29721880 | Msa0159300:CDS |
| TTTGCATGGTCGCTCCGATG+TGG | 0.602338 | 1_4:-29723101 | Msa0159300:CDS |
| AGTAAAAGATATGGAATATG+CGG | 0.604042 | 1_4:-29720150 | Msa0159300:CDS |
| TTCCAAGGAATTTCGTAGAG+AGG | 0.604264 | 1_4:-29723235 | Msa0159300:CDS |
| GAGCGTGGTAGTGAAGCTAA+AGG | 0.613987 | 1_4:-29724138 | Msa0159300:CDS |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_4:-29719822 | Msa0159300:CDS |
| TACTATTATCCCAACCACAA+AGG | 0.624953 | 1_4:-29721703 | Msa0159300:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.626789 | 1_4:-29721869 | Msa0159300:CDS |
| GAATGAGTTATTGCAAGGGA+AGG | 0.643476 | 1_4:-29721904 | Msa0159300:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1_4:-29719780 | Msa0159300:CDS |
| GAACAACACGGCAATGAGCG+TGG | 0.647962 | 1_4:-29724153 | Msa0159300:CDS |
| CTACTGCTGCTACACCTCAA+GGG | 0.654975 | 1_4:-29722830 | Msa0159300:CDS |
| ACATGAATGAGTTATTGCAA+GGG | 0.661417 | 1_4:-29721908 | Msa0159300:CDS |
| AAACTAAAAGATCTCCACAT+CGG | 0.700040 | 1_4:+29723087 | None:intergenic |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_4:-29722472 | Msa0159300:CDS |
| TGGACATGTGCAGAAAACCA+AGG | 0.707757 | 1_4:-29720200 | Msa0159300:intron |
| AGCATGTGGTTTGAACAACA+CGG | 0.751745 | 1_4:-29724165 | Msa0159300:CDS |
| AAAATGAATTGGGTGCAACG+CGG | 0.811094 | 1_4:-29723155 | Msa0159300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATTGAATAATAAAAAT+GGG | + | chr1_4:29719917-29719936 | None:intergenic | 10.0% |
| !! | AGTTTATTGAATAATAAAAA+TGG | + | chr1_4:29719918-29719937 | None:intergenic | 10.0% |
| !! | TTTATTATCATTAATCAAAT+TGG | - | chr1_4:29720171-29720190 | Msa0159300:CDS | 10.0% |
| !! | TGTTTGTAATAAATTAATTA+AGG | + | chr1_4:29722791-29722810 | None:intergenic | 10.0% |
| !!! | TAAAATATACAAATTTTTCA+AGG | - | chr1_4:29723356-29723375 | Msa0159300:intron | 10.0% |
| !! | TAAACAGATGAATAAATAAA+AGG | + | chr1_4:29721046-29721065 | None:intergenic | 15.0% |
| !! | TTTATTTATTCATCTGTTTA+TGG | - | chr1_4:29721046-29721065 | Msa0159300:intron | 15.0% |
| !! | TTATTTATTCATCTGTTTAT+GGG | - | chr1_4:29721047-29721066 | Msa0159300:intron | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | - | chr1_4:29722241-29722260 | Msa0159300:intron | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | - | chr1_4:29722253-29722272 | Msa0159300:intron | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | + | chr1_4:29723173-29723192 | None:intergenic | 15.0% |
| !!! | CTAAGATTAATTTTTATACA+TGG | - | chr1_4:29723415-29723434 | Msa0159300:intron | 15.0% |
| !! | ACAGATAGTAATACATAAAT+GGG | + | chr1_4:29719759-29719778 | None:intergenic | 20.0% |
| !! | TACAGATAGTAATACATAAA+TGG | + | chr1_4:29719760-29719779 | None:intergenic | 20.0% |
| !! | TCAAATGCTATATATTCTAT+TGG | - | chr1_4:29720014-29720033 | Msa0159300:intron | 20.0% |
| !!! | TTTGTTTTTAGTGTCAAAAT+GGG | + | chr1_4:29720137-29720156 | None:intergenic | 20.0% |
| !! | TGATTGAATAATGAAAACTA+AGG | + | chr1_4:29720440-29720459 | None:intergenic | 20.0% |
| !! | AATCCAAATTTATACTCTAT+TGG | - | chr1_4:29720496-29720515 | Msa0159300:intron | 20.0% |
| !! | AAACCAATAGAGTATAAATT+TGG | + | chr1_4:29720502-29720521 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_4:29721133-29721152 | None:intergenic | 20.0% |
| !!! | ATGTACTTATGTAATTTGTA+TGG | + | chr1_4:29721145-29721164 | None:intergenic | 20.0% |
| !! | AGAATATACGTAAATAAAGT+GGG | + | chr1_4:29721183-29721202 | None:intergenic | 20.0% |
| !! | AAGAATATACGTAAATAAAG+TGG | + | chr1_4:29721184-29721203 | None:intergenic | 20.0% |
| !! | TTAAGATTACTAGATCAAAA+AGG | - | chr1_4:29722296-29722315 | Msa0159300:intron | 20.0% |
| !! | ATGTTAATGTTAATGTCATT+AGG | - | chr1_4:29722385-29722404 | Msa0159300:CDS | 20.0% |
| !! | TGTTAATGTTAATGTCATTA+GGG | - | chr1_4:29722386-29722405 | Msa0159300:CDS | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | + | chr1_4:29722765-29722784 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTCTAATAA+TGG | - | chr1_4:29723280-29723299 | Msa0159300:intron | 20.0% |
| !! | AAAGAAAACAACATAGTTTA+AGG | + | chr1_4:29723763-29723782 | None:intergenic | 20.0% |
| !!! | GGGTTAGTTTATACTTTATA+GGG | + | chr1_4:29719739-29719758 | None:intergenic | 25.0% |
| !!! | TGGGTTAGTTTATACTTTAT+AGG | + | chr1_4:29719740-29719759 | None:intergenic | 25.0% |
| ! | TTACTAGACTTTATTCTTTC+TGG | - | chr1_4:29719811-29719830 | Msa0159300:CDS | 25.0% |
| !!! | GTTTGTTTTTAGTGTCAAAA+TGG | + | chr1_4:29720138-29720157 | None:intergenic | 25.0% |
| ! | AATGATAATAAATCCGTACA+GGG | + | chr1_4:29720163-29720182 | None:intergenic | 25.0% |
| ! | TAATGATAATAAATCCGTAC+AGG | + | chr1_4:29720164-29720183 | None:intergenic | 25.0% |
| ! | AAACAGTCTATTTAAAGAGT+TGG | + | chr1_4:29720266-29720285 | None:intergenic | 25.0% |
| ! | CTCTTTAAATAGACTGTTTA+AGG | - | chr1_4:29720267-29720286 | Msa0159300:intron | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_4:29720705-29720724 | Msa0159300:intron | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | + | chr1_4:29721094-29721113 | None:intergenic | 25.0% |
| ! | TATTACAGAAAAAGTAGTAC+AGG | + | chr1_4:29721468-29721487 | None:intergenic | 25.0% |
| ! | TATTAACAAGAGAGTCATTT+GGG | + | chr1_4:29721569-29721588 | None:intergenic | 25.0% |
| ! | ACTAACAGAAAACATATTCA+TGG | - | chr1_4:29721607-29721626 | Msa0159300:intron | 25.0% |
| ! | TTGAAGATCAAAATAACTAG+CGG | - | chr1_4:29721699-29721718 | Msa0159300:CDS | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | + | chr1_4:29722062-29722081 | None:intergenic | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | + | chr1_4:29722225-29722244 | None:intergenic | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | - | chr1_4:29722719-29722738 | Msa0159300:intron | 25.0% |
| ! | GAGATATGAAAATCCAAAAA+AGG | + | chr1_4:29722735-29722754 | None:intergenic | 25.0% |
| ! | AATAGAAAAAATGACTGATG+TGG | - | chr1_4:29723188-29723207 | Msa0159300:CDS | 25.0% |
| ! | TTAAACACACTATCATCTAT+TGG | + | chr1_4:29723215-29723234 | None:intergenic | 25.0% |
| !! | AATAGATGATAGTGTGTTTA+AGG | - | chr1_4:29723214-29723233 | Msa0159300:CDS | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | - | chr1_4:29723215-29723234 | Msa0159300:CDS | 25.0% |
| ! | AGTAAAAGATATGGAATATG+CGG | - | chr1_4:29723629-29723648 | Msa0159300:intron | 25.0% |
| ! | GAATTTACATGAGATGTTTA+AGG | - | chr1_4:29723813-29723832 | Msa0159300:intron | 25.0% |
| !! | TTTTATAACATCATCAGACA+AGG | - | chr1_4:29723837-29723856 | Msa0159300:intron | 25.0% |
| ! | TTTGTTCATATATATGCAGT+TGG | - | chr1_4:29723923-29723942 | Msa0159300:intron | 25.0% |
| ! | TATATTTAGTGGAAATTCAG+TGG | - | chr1_4:29723980-29723999 | Msa0159300:intron | 25.0% |
| TAGTACTCAATGTACATGTT+TGG | - | chr1_4:29719860-29719879 | Msa0159300:intron | 30.0% | |
| ! | TTTTCAACTGAACCCAAAAT+GGG | + | chr1_4:29719886-29719905 | None:intergenic | 30.0% |
| ATTCTATTGGACTTAAGATG+TGG | - | chr1_4:29720027-29720046 | Msa0159300:intron | 30.0% | |
| TAAAAACAAACAACCCTGTA+CGG | - | chr1_4:29720147-29720166 | Msa0159300:CDS | 30.0% | |
| AGCATGATCAAAACAGTATT+GGG | + | chr1_4:29720321-29720340 | None:intergenic | 30.0% | |
| AAGCATGATCAAAACAGTAT+TGG | + | chr1_4:29720322-29720341 | None:intergenic | 30.0% | |
| GTGTAATATTCCCATATATC+TGG | - | chr1_4:29720397-29720416 | Msa0159300:intron | 30.0% | |
| AGTTTAAGGGATATTGGATT+TGG | + | chr1_4:29720585-29720604 | None:intergenic | 30.0% | |
| TTTGGAAGTTTAAGGGATAT+TGG | + | chr1_4:29720591-29720610 | None:intergenic | 30.0% | |
| ATATCCCTTAAACTTCCAAA+TGG | - | chr1_4:29720591-29720610 | Msa0159300:intron | 30.0% | |
| TATCCCTTAAACTTCCAAAT+GGG | - | chr1_4:29720592-29720611 | Msa0159300:intron | 30.0% | |
| AAACTAAAAGATCTCCACAT+CGG | + | chr1_4:29720695-29720714 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_4:29720708-29720727 | Msa0159300:intron | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_4:29720709-29720728 | Msa0159300:intron | 30.0% |
| !! | TTTGTATTTTCAGTGTCACT+AGG | + | chr1_4:29720885-29720904 | None:intergenic | 30.0% |
| AAAAAGAGAACCAACTCAAA+TGG | - | chr1_4:29720918-29720937 | Msa0159300:intron | 30.0% | |
| ! | CCAAAATTTGAGATGAACTA+AGG | + | chr1_4:29721095-29721114 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | - | chr1_4:29721092-29721111 | Msa0159300:intron | 30.0% |
| ! | AACTCTTTTCAGCATTTGAA+AGG | + | chr1_4:29721273-29721292 | None:intergenic | 30.0% |
| !!! | GAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_4:29721288-29721307 | Msa0159300:intron | 30.0% |
| GATAATTTGACAGTGAAACT+AGG | + | chr1_4:29721406-29721425 | None:intergenic | 30.0% | |
| TTATCACCTTCAACATGATA+TGG | + | chr1_4:29721430-29721449 | None:intergenic | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | - | chr1_4:29721435-29721454 | Msa0159300:intron | 30.0% | |
| TCAATACATTCAGTTCCTAT+AGG | + | chr1_4:29721531-29721550 | None:intergenic | 30.0% | |
| ATTAACAAGAGAGTCATTTG+GGG | + | chr1_4:29721568-29721587 | None:intergenic | 30.0% | |
| CTATTAACAAGAGAGTCATT+TGG | + | chr1_4:29721570-29721589 | None:intergenic | 30.0% | |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_4:29721852-29721871 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_4:29721870-29721889 | Msa0159300:CDS | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_4:29721871-29721890 | Msa0159300:CDS | 30.0% | |
| ACGCAATAAAATAGAGCTTA+GGG | + | chr1_4:29722352-29722371 | None:intergenic | 30.0% | |
| AACGCAATAAAATAGAGCTT+AGG | + | chr1_4:29722353-29722372 | None:intergenic | 30.0% | |
| ! | TAAGCTCTATTTTATTGCGT+TGG | - | chr1_4:29722352-29722371 | Msa0159300:intron | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+CGG | + | chr1_4:29722451-29722470 | None:intergenic | 30.0% |
| CGTAACAAATACTTGTTCAA+CGG | - | chr1_4:29722449-29722468 | Msa0159300:CDS | 30.0% | |
| AAACAACACTAATAAGTGGA+CGG | + | chr1_4:29722578-29722597 | None:intergenic | 30.0% | |
| ACACAAACAACACTAATAAG+TGG | + | chr1_4:29722582-29722601 | None:intergenic | 30.0% | |
| CTAAAAGTGATATATCTGCA+AGG | - | chr1_4:29723446-29723465 | Msa0159300:intron | 30.0% | |
| ! | GCATATTCCATATCTTTTAC+TGG | + | chr1_4:29723630-29723649 | None:intergenic | 30.0% |
| GTAAAAGATATGGAATATGC+GGG | - | chr1_4:29723630-29723649 | Msa0159300:intron | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | - | chr1_4:29723655-29723674 | Msa0159300:intron | 30.0% |
| !! | CACAAAAACACATGGTTTTA+GGG | - | chr1_4:29723683-29723702 | Msa0159300:intron | 30.0% |
| !!! | ACAAAAACACATGGTTTTAG+GGG | - | chr1_4:29723684-29723703 | Msa0159300:intron | 30.0% |
| ! | AAGAAGCATGGTATATTTAG+TGG | - | chr1_4:29723969-29723988 | Msa0159300:intron | 30.0% |
| TATAATGAACATCTCGACTA+TGG | - | chr1_4:29724044-29724063 | Msa0159300:intron | 30.0% | |
| ! | GTTTTCAACTGAACCCAAAA+TGG | + | chr1_4:29719887-29719906 | None:intergenic | 35.0% |
| ! | CATGATCAAAACAGTATTGG+GGG | + | chr1_4:29720319-29720338 | None:intergenic | 35.0% |
| GCATGATCAAAACAGTATTG+GGG | + | chr1_4:29720320-29720339 | None:intergenic | 35.0% | |
| GCTTTCTGTTGCAAAATGTT+TGG | - | chr1_4:29720338-29720357 | Msa0159300:intron | 35.0% | |
| CTGTTGCAAAATGTTTGGTA+TGG | - | chr1_4:29720343-29720362 | Msa0159300:intron | 35.0% | |
| CCTAAGCAAACCAGATATAT+GGG | + | chr1_4:29720410-29720429 | None:intergenic | 35.0% | |
| ACCTAAGCAAACCAGATATA+TGG | + | chr1_4:29720411-29720430 | None:intergenic | 35.0% | |
| TGACCCATTTGGAAGTTTAA+GGG | + | chr1_4:29720598-29720617 | None:intergenic | 35.0% | |
| GTCAGCATGCAAAATGAATT+GGG | - | chr1_4:29720614-29720633 | Msa0159300:intron | 35.0% | |
| ! | ATGGTATTTGGCTTCAGAAT+TGG | - | chr1_4:29720649-29720668 | Msa0159300:intron | 35.0% |
| !! | TTGGTTCTCTTTTTCTTGAG+GGG | + | chr1_4:29720912-29720931 | None:intergenic | 35.0% |
| !! | GTTGGTTCTCTTTTTCTTGA+GGG | + | chr1_4:29720913-29720932 | None:intergenic | 35.0% |
| !! | AGTTGGTTCTCTTTTTCTTG+AGG | + | chr1_4:29720914-29720933 | None:intergenic | 35.0% |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | - | chr1_4:29721295-29721314 | Msa0159300:intron | 35.0% |
| TTATCGCCATATCATGTTGA+AGG | - | chr1_4:29721421-29721440 | Msa0159300:intron | 35.0% | |
| ! | AGAGGCTTTCATTTTCCTAT+AGG | - | chr1_4:29721513-29721532 | Msa0159300:intron | 35.0% |
| ATTCATGCACGAAATATGCA+AGG | + | chr1_4:29721784-29721803 | None:intergenic | 35.0% | |
| TTCGAAAACCAACTAGGTAT+CGG | + | chr1_4:29721846-29721865 | None:intergenic | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_4:29721894-29721913 | Msa0159300:CDS | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_4:29721899-29721918 | Msa0159300:CDS | 35.0% |
| ! | CAAGAGCAGTTTTCTAATGA+GGG | - | chr1_4:29721959-29721978 | Msa0159300:intron | 35.0% |
| !! | AGGTTGGAAGTCATTTTCAA+AGG | - | chr1_4:29721983-29722002 | Msa0159300:intron | 35.0% |
| ! | AAGGAACATGAGTTGAAAGT+TGG | - | chr1_4:29722002-29722021 | Msa0159300:intron | 35.0% |
| TACTATTATCCCAACCACAA+AGG | - | chr1_4:29722076-29722095 | Msa0159300:intron | 35.0% | |
| GCAATAAAATAGAGCTTAGG+GGG | + | chr1_4:29722350-29722369 | None:intergenic | 35.0% | |
| CGCAATAAAATAGAGCTTAG+GGG | + | chr1_4:29722351-29722370 | None:intergenic | 35.0% | |
| ! | AGTATTTGTTACGGTTACGT+CGG | + | chr1_4:29722442-29722461 | None:intergenic | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | - | chr1_4:29722453-29722472 | Msa0159300:CDS | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | - | chr1_4:29722500-29722519 | Msa0159300:intron | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | - | chr1_4:29722505-29722524 | Msa0159300:intron | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | - | chr1_4:29722543-29722562 | Msa0159300:intron | 35.0% | |
| AACAACACTAATAAGTGGAC+GGG | + | chr1_4:29722577-29722596 | None:intergenic | 35.0% | |
| ACATACATTGAACAGTGTGT+AGG | + | chr1_4:29722666-29722685 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAAGAACA+GGG | - | chr1_4:29722843-29722862 | Msa0159300:CDS | 35.0% | |
| !! | ACGAGGTTTTATGACAGTAA+GGG | + | chr1_4:29723106-29723125 | None:intergenic | 35.0% |
| ! | GTGTTGTCTCTGATTTTTCT+TGG | + | chr1_4:29723608-29723627 | None:intergenic | 35.0% |
| GACAACACCAGTAAAAGATA+TGG | - | chr1_4:29723620-29723639 | Msa0159300:intron | 35.0% | |
| ! | GCACAAAAACACATGGTTTT+AGG | - | chr1_4:29723682-29723701 | Msa0159300:intron | 35.0% |
| CACACACATAGCTATATACA+TGG | + | chr1_4:29723887-29723906 | None:intergenic | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+TGG | - | chr1_4:29724098-29724117 | Msa0159300:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_4:29724148-29724167 | Msa0159300:CDS | 35.0% | |
| ! | TGTACATGTTTGGCCCATTT+TGG | - | chr1_4:29719870-29719889 | Msa0159300:intron | 40.0% |
| ! | GTACATGTTTGGCCCATTTT+GGG | - | chr1_4:29719871-29719890 | Msa0159300:intron | 40.0% |
| GTATACTTGCTTCACTTTCG+TGG | - | chr1_4:29720058-29720077 | Msa0159300:intron | 40.0% | |
| !! | GGCAATACCATTTTTGCCTT+CGG | - | chr1_4:29720364-29720383 | Msa0159300:intron | 40.0% |
| TTACACATAGAGAGAACCGA+AGG | + | chr1_4:29720383-29720402 | None:intergenic | 40.0% | |
| !! | CCCATATATCTGGTTTGCTT+AGG | - | chr1_4:29720407-29720426 | Msa0159300:intron | 40.0% |
| TTCCAAGGAATTTCGTAGAG+AGG | - | chr1_4:29720544-29720563 | Msa0159300:intron | 40.0% | |
| TACCTCTCTACGAAATTCCT+TGG | + | chr1_4:29720549-29720568 | None:intergenic | 40.0% | |
| ! | GGAATTTCGTAGAGAGGTAT+TGG | - | chr1_4:29720550-29720569 | Msa0159300:intron | 40.0% |
| CTGACCCATTTGGAAGTTTA+AGG | + | chr1_4:29720599-29720618 | None:intergenic | 40.0% | |
| ! | ATTTTGCATGCTGACCCATT+TGG | + | chr1_4:29720609-29720628 | None:intergenic | 40.0% |
| GGTCAGCATGCAAAATGAAT+TGG | - | chr1_4:29720613-29720632 | Msa0159300:intron | 40.0% | |
| AAAATGAATTGGGTGCAACG+CGG | - | chr1_4:29720624-29720643 | Msa0159300:intron | 40.0% | |
| ! | TTTGGCTTCAGAATTGGAAG+AGG | - | chr1_4:29720655-29720674 | Msa0159300:intron | 40.0% |
| AGAATTGGAAGAGGTTTGCA+TGG | - | chr1_4:29720664-29720683 | Msa0159300:intron | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_4:29720719-29720738 | None:intergenic | 40.0% | |
| ! | AGTAGCAATGCCATTTGAGT+TGG | + | chr1_4:29720931-29720950 | None:intergenic | 40.0% |
| TTGTGAATGTTAGTCCCTTG+AGG | + | chr1_4:29720966-29720985 | None:intergenic | 40.0% | |
| TGCAACCCAGCAAAAAGTTT+CGG | - | chr1_4:29721004-29721023 | Msa0159300:intron | 40.0% | |
| ! | CTTACCCGAAACTTTTTGCT+GGG | + | chr1_4:29721012-29721031 | None:intergenic | 40.0% |
| ! | ACTTACCCGAAACTTTTTGC+TGG | + | chr1_4:29721013-29721032 | None:intergenic | 40.0% |
| GTGAAACTAGGACTCTCATT+GGG | + | chr1_4:29721394-29721413 | None:intergenic | 40.0% | |
| AGTGAAACTAGGACTCTCAT+TGG | + | chr1_4:29721395-29721414 | None:intergenic | 40.0% | |
| AACTAGCGGAAGAGACATTT+AGG | - | chr1_4:29721713-29721732 | Msa0159300:CDS | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_4:29721875-29721894 | Msa0159300:CDS | 40.0% | |
| ! | GCAAGAGCAGTTTTCTAATG+AGG | - | chr1_4:29721958-29721977 | Msa0159300:intron | 40.0% |
| CAATACCTTGAAACTTCTCC+GGG | + | chr1_4:29722109-29722128 | None:intergenic | 40.0% | |
| GCAATACCTTGAAACTTCTC+CGG | + | chr1_4:29722110-29722129 | None:intergenic | 40.0% | |
| ! | CAGTTTCACATGGTTTGGAA+CGG | - | chr1_4:29722510-29722529 | Msa0159300:intron | 40.0% |
| CGAAAACGGTTCTGTCAAAA+TGG | - | chr1_4:29722534-29722553 | Msa0159300:intron | 40.0% | |
| ATGTATGTGTGCCATCAAAC+AGG | - | chr1_4:29722678-29722697 | Msa0159300:intron | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | - | chr1_4:29722679-29722698 | Msa0159300:intron | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | + | chr1_4:29722838-29722857 | None:intergenic | 40.0% |
| ! | CTGTTCTTGTTTCTTCTCTC+TGG | + | chr1_4:29722844-29722863 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAAGAAC+AGG | - | chr1_4:29722842-29722861 | Msa0159300:CDS | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | - | chr1_4:29722884-29722903 | Msa0159300:intron | 40.0% | |
| ! | GGTTCACGTTTTCTGATCTA+CGG | - | chr1_4:29723023-29723042 | Msa0159300:intron | 40.0% |
| ! | GTTCACGTTTTCTGATCTAC+GGG | - | chr1_4:29723024-29723043 | Msa0159300:intron | 40.0% |
| TTCTTTGGTGAGCAGTTGTT+GGG | - | chr1_4:29723049-29723068 | Msa0159300:intron | 40.0% | |
| !! | CGAGGTTTTATGACAGTAAG+GGG | + | chr1_4:29723105-29723124 | None:intergenic | 40.0% |
| !! | CACGAGGTTTTATGACAGTA+AGG | + | chr1_4:29723107-29723126 | None:intergenic | 40.0% |
| GTCATAAAACCTCGTGATGA+AGG | - | chr1_4:29723111-29723130 | Msa0159300:CDS | 40.0% | |
| AACCTCGTGATGAAGGATAA+TGG | - | chr1_4:29723118-29723137 | Msa0159300:CDS | 40.0% | |
| ! | TCGTGATGAAGGATAATGGT+GGG | - | chr1_4:29723122-29723141 | Msa0159300:CDS | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | - | chr1_4:29723144-29723163 | Msa0159300:CDS | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | + | chr1_4:29723549-29723568 | None:intergenic | 40.0% | |
| ACATGTCCACAAACTTCTCA+GGG | + | chr1_4:29723568-29723587 | None:intergenic | 40.0% | |
| ! | CTGATTTTTCTTGGACTCCT+TGG | + | chr1_4:29723599-29723618 | None:intergenic | 40.0% |
| ! | ATGGAATATGCGGGCAATTT+TGG | - | chr1_4:29723639-29723658 | Msa0159300:intron | 40.0% |
| AATTCAGTGGAGTTGAGAGT+AGG | - | chr1_4:29723993-29724012 | Msa0159300:intron | 40.0% | |
| ATTCAGTGGAGTTGAGAGTA+GGG | - | chr1_4:29723994-29724013 | Msa0159300:intron | 40.0% | |
| ATGAACATCTCGACTATGGT+TGG | - | chr1_4:29724048-29724067 | Msa0159300:intron | 40.0% | |
| ! | GACTATGGTTGGTTCACTAA+AGG | - | chr1_4:29724059-29724078 | Msa0159300:intron | 40.0% |
| ! | ATGGTTGGTTCACTAAAGGT+TGG | - | chr1_4:29724063-29724082 | Msa0159300:intron | 40.0% |
| CCACCAAATGATGAATCGCT+CGG | + | chr1_4:29720206-29720225 | None:intergenic | 45.0% | |
| TTGAGCACAAGTGGTTAACG+AGG | + | chr1_4:29720230-29720249 | None:intergenic | 45.0% | |
| ACCACTTGTGCTCAATCACT+TGG | - | chr1_4:29720235-29720254 | Msa0159300:intron | 45.0% | |
| ACCAAGTGATTGAGCACAAG+TGG | + | chr1_4:29720239-29720258 | None:intergenic | 45.0% | |
| GAGAGAACCGAAGGCAAAAA+TGG | + | chr1_4:29720374-29720393 | None:intergenic | 45.0% | |
| TGTGCTTGCAGATGATTCCA+AGG | - | chr1_4:29720529-29720548 | Msa0159300:intron | 45.0% | |
| GCAACCCAGCAAAAAGTTTC+GGG | - | chr1_4:29721005-29721024 | Msa0159300:intron | 45.0% | |
| TAATGGAAACACAGGAGGCA+TGG | - | chr1_4:29721312-29721331 | Msa0159300:intron | 45.0% | |
| ! | AATGGAAACACAGGAGGCAT+GGG | - | chr1_4:29721313-29721332 | Msa0159300:intron | 45.0% |
| TTCGTACCTAACTGTGTGAG+AGG | - | chr1_4:29721495-29721514 | Msa0159300:intron | 45.0% | |
| TGAAAGCCTCTCACACAGTT+AGG | + | chr1_4:29721504-29721523 | None:intergenic | 45.0% | |
| !! | AACTAGGTATCGGCTGTTTC+AGG | + | chr1_4:29721836-29721855 | None:intergenic | 45.0% |
| TGAAACAGCCGATACCTAGT+TGG | - | chr1_4:29721835-29721854 | Msa0159300:CDS | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | - | chr1_4:29721904-29721923 | Msa0159300:CDS | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | - | chr1_4:29721905-29721924 | Msa0159300:CDS | 45.0% |
| ! | AGCAGTTTTCTAATGAGGGC+AGG | - | chr1_4:29721963-29721982 | Msa0159300:intron | 45.0% |
| ! | GTTTTCTAATGAGGGCAGGT+TGG | - | chr1_4:29721967-29721986 | Msa0159300:intron | 45.0% |
| GTTACGGTTACGTCGGATTT+CGG | + | chr1_4:29722435-29722454 | None:intergenic | 45.0% | |
| ! | TGGTTTGGAACGGACGAAAA+CGG | - | chr1_4:29722520-29722539 | Msa0159300:intron | 45.0% |
| ! | CACTAATAAGTGGACGGGTT+CGG | + | chr1_4:29722572-29722591 | None:intergenic | 45.0% |
| TCAAGACACACCCTGTTTGA+TGG | + | chr1_4:29722692-29722711 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | + | chr1_4:29722834-29722853 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | + | chr1_4:29722835-29722854 | None:intergenic | 45.0% |
| ! | TGACGGGTCTAACGGAATAA+CGG | + | chr1_4:29722970-29722989 | None:intergenic | 45.0% |
| GACCGTTTCAACGTCAGTTT+CGG | + | chr1_4:29722997-29723016 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | - | chr1_4:29722996-29723015 | Msa0159300:intron | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | - | chr1_4:29722997-29723016 | Msa0159300:intron | 45.0% | |
| TCTGATCTACGGGTGTTCTT+TGG | - | chr1_4:29723034-29723053 | Msa0159300:intron | 45.0% | |
| GTTCTTTGGTGAGCAGTTGT+TGG | - | chr1_4:29723048-29723067 | Msa0159300:intron | 45.0% | |
| CACCATTATCCTTCATCACG+AGG | + | chr1_4:29723123-29723142 | None:intergenic | 45.0% | |
| ! | CTCGTGATGAAGGATAATGG+TGG | - | chr1_4:29723121-29723140 | Msa0159300:CDS | 45.0% |
| !! | TGAAGGATAATGGTGGGTTG+TGG | - | chr1_4:29723128-29723147 | Msa0159300:CDS | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | - | chr1_4:29723129-29723148 | Msa0159300:CDS | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | + | chr1_4:29723548-29723567 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | + | chr1_4:29723550-29723569 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | - | chr1_4:29723559-29723578 | Msa0159300:intron | 45.0% | |
| CACATGTCCACAAACTTCTC+AGG | + | chr1_4:29723569-29723588 | None:intergenic | 45.0% | |
| TGGACATGTGCAGAAAACCA+AGG | - | chr1_4:29723579-29723598 | Msa0159300:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | - | chr1_4:29723645-29723664 | Msa0159300:intron | 45.0% |
| AGGAGCTGCACAAAAACACA+TGG | - | chr1_4:29723675-29723694 | Msa0159300:intron | 45.0% | |
| TGCTTCTTCAACAGCTCACT+TGG | + | chr1_4:29723957-29723976 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | - | chr1_4:29723957-29723976 | Msa0159300:intron | 45.0% | |
| TTCAGTGGAGTTGAGAGTAG+GGG | - | chr1_4:29723995-29724014 | Msa0159300:intron | 45.0% | |
| TGGAGACACTTGCTTGTTTG+AGG | - | chr1_4:29724118-29724137 | Msa0159300:CDS | 45.0% | |
| ! | GAGCGTGGTAGTGAAGCTAA+AGG | - | chr1_4:29719641-29719660 | Msa0159300:CDS | 50.0% |
| GCTCCGAGCGATTCATCATT+TGG | - | chr1_4:29720200-29720219 | Msa0159300:intron | 50.0% | |
| CCGAGCGATTCATCATTTGG+TGG | - | chr1_4:29720203-29720222 | Msa0159300:intron | 50.0% | |
| ! | TGCAACGCGGTGATGGTATT+TGG | - | chr1_4:29720637-29720656 | Msa0159300:intron | 50.0% |
| ACTACTGCTGCTACACCTCA+AGG | - | chr1_4:29720948-29720967 | Msa0159300:intron | 50.0% | |
| CTACTGCTGCTACACCTCAA+GGG | - | chr1_4:29720949-29720968 | Msa0159300:intron | 50.0% | |
| GCAGAGGCTAATGGAAACAC+AGG | - | chr1_4:29721304-29721323 | Msa0159300:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | - | chr1_4:29721307-29721326 | Msa0159300:intron | 50.0% | |
| !! | GTATCGGCTGTTTCAGGTCA+TGG | + | chr1_4:29721830-29721849 | None:intergenic | 50.0% |
| ATCCCAACCACAAAGGAACC+AGG | - | chr1_4:29722083-29722102 | Msa0159300:intron | 50.0% | |
| GTTCAACGGTCGGATGTGTA+CGG | - | chr1_4:29722463-29722482 | Msa0159300:CDS | 50.0% | |
| TTCAACGGTCGGATGTGTAC+GGG | - | chr1_4:29722464-29722483 | Msa0159300:CDS | 50.0% | |
| !! | GGTCTAACGGAATAACGGGT+GGG | + | chr1_4:29722965-29722984 | None:intergenic | 50.0% |
| GACGGGTCTAACGGAATAAC+GGG | + | chr1_4:29722969-29722988 | None:intergenic | 50.0% | |
| GTTTCAACGTCAGTTTCGGC+GGG | + | chr1_4:29722993-29723012 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | + | chr1_4:29722994-29723013 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | - | chr1_4:29722992-29723011 | Msa0159300:intron | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+TGG | - | chr1_4:29723239-29723258 | Msa0159300:CDS | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_4:29724006-29724025 | Msa0159300:intron | 50.0% | |
| GAACAACACGGCAATGAGCG+TGG | - | chr1_4:29719626-29719645 | Msa0159300:CDS | 55.0% | |
| AATTGGGTGCAACGCGGTGA+TGG | - | chr1_4:29720630-29720649 | Msa0159300:intron | 55.0% | |
| TTTGCATGGTCGCTCCGATG+TGG | - | chr1_4:29720678-29720697 | Msa0159300:intron | 55.0% | |
| GGCCTGGTTCCTTTGTGGTT+GGG | + | chr1_4:29722088-29722107 | None:intergenic | 55.0% | |
| AACCACAAAGGAACCAGGCC+CGG | - | chr1_4:29722088-29722107 | Msa0159300:intron | 55.0% | |
| CGGTTACGTCGGATTTCGGT+CGG | + | chr1_4:29722431-29722450 | None:intergenic | 55.0% | |
| TACAACCGAGCCAAACCACC+TGG | - | chr1_4:29722939-29722958 | Msa0159300:intron | 55.0% | |
| ! | GGGTCTAACGGAATAACGGG+TGG | + | chr1_4:29722966-29722985 | None:intergenic | 55.0% |
| GACGTTGAAACGGTCGGGAA+TGG | - | chr1_4:29723002-29723021 | Msa0159300:intron | 55.0% | |
| TGACAGTAAGGGGTGAGCAC+CGG | + | chr1_4:29723095-29723114 | None:intergenic | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_4:29723999-29724018 | Msa0159300:intron | 55.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | - | chr1_4:29721910-29721929 | Msa0159300:CDS | 60.0% |
| GGGCCTGGTTCCTTTGTGGT+TGG | + | chr1_4:29722089-29722108 | None:intergenic | 60.0% | |
| CCTTGAAACTTCTCCGGGCC+TGG | + | chr1_4:29722104-29722123 | None:intergenic | 60.0% | |
| CCAGGCCCGGAGAAGTTTCA+AGG | - | chr1_4:29722101-29722120 | Msa0159300:intron | 60.0% | |
| !! | AACGGAATAACGGGTGGGCC+AGG | + | chr1_4:29722960-29722979 | None:intergenic | 60.0% |
| ACGTCAGTTTCGGCGGGTGA+CGG | + | chr1_4:29722987-29723006 | None:intergenic | 60.0% | |
| !! | AGTAAGGGGTGAGCACCGGT+CGG | + | chr1_4:29723091-29723110 | None:intergenic | 60.0% |
| CTCCGGGCCTGGTTCCTTTG+TGG | + | chr1_4:29722093-29722112 | None:intergenic | 65.0% | |
| TCACGCGCGCGTGGCTTCTA+CGG | + | chr1_4:29722607-29722626 | None:intergenic | 65.0% | |
| TCTCACACTTCACGCGCGCG+TGG | + | chr1_4:29722616-29722635 | None:intergenic | 65.0% | |
| ! | GTGGGCCAGGTGGTTTGGCT+CGG | + | chr1_4:29722947-29722966 | None:intergenic | 65.0% |
| AACGGGTGGGCCAGGTGGTT+TGG | + | chr1_4:29722952-29722971 | None:intergenic | 65.0% | |
| !! | GGAATAACGGGTGGGCCAGG+TGG | + | chr1_4:29722957-29722976 | None:intergenic | 65.0% |
| !! | TCGGCGGGTGACGGGTCTAA+CGG | + | chr1_4:29722978-29722997 | None:intergenic | 65.0% |
| CGTCAGTTTCGGCGGGTGAC+GGG | + | chr1_4:29722986-29723005 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+CGG | + | chr1_4:29723075-29723094 | None:intergenic | 65.0% |
| CGAATCCGCCCGTAACCGAC+CGG | - | chr1_4:29723073-29723092 | Msa0159300:CDS | 65.0% | |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | + | chr1_4:29723084-29723103 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | + | chr1_4:29723085-29723104 | None:intergenic | 65.0% |
| !! | GAGCACCGGTCGGTTACGGG+CGG | + | chr1_4:29723081-29723100 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 29719617 | 29724184 | 29719617 | ID=Msa0159300;Name=Msa0159300 |
| chr1_4 | mRNA | 29719617 | 29724184 | 29719617 | ID=Msa0159300-mRNA-1;Parent=Msa0159300;Name=Msa0159300-mRNA-1;_AED=0.15;_eAED=0.22;_QI=0|0|0|1|1|1|8|0|411 |
| chr1_4 | exon | 29724086 | 29724184 | 29724086 | ID=Msa0159300-mRNA-1:exon:9566;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29723058 | 29723261 | 29723058 | ID=Msa0159300-mRNA-1:exon:9565;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29722775 | 29722883 | 29722775 | ID=Msa0159300-mRNA-1:exon:9564;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29722366 | 29722493 | 29722366 | ID=Msa0159300-mRNA-1:exon:9563;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29721679 | 29721958 | 29721679 | ID=Msa0159300-mRNA-1:exon:9562;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29720096 | 29720209 | 29720096 | ID=Msa0159300-mRNA-1:exon:9561;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29719943 | 29720001 | 29719943 | ID=Msa0159300-mRNA-1:exon:9560;Parent=Msa0159300-mRNA-1 |
| chr1_4 | exon | 29719617 | 29719859 | 29719617 | ID=Msa0159300-mRNA-1:exon:9559;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29724086 | 29724184 | 29724086 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29723058 | 29723261 | 29723058 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29722775 | 29722883 | 29722775 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29722366 | 29722493 | 29722366 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29721679 | 29721958 | 29721679 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29720096 | 29720209 | 29720096 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29719943 | 29720001 | 29719943 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| chr1_4 | CDS | 29719617 | 29719859 | 29719617 | ID=Msa0159300-mRNA-1:cds;Parent=Msa0159300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
