Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160910 | XP_039682567.1 | 97.059 | 204 | 6 | 0 | 1 | 204 | 1 | 204 | 6.99e-140 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160910 | sp|Q3EAI1|BH060_ARATH | 48.347 | 242 | 86 | 8 | 2 | 210 | 19 | 254 | 1.27e-46 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160910 | A0A072VIE0 | 94.286 | 210 | 12 | 0 | 1 | 210 | 1 | 210 | 2.72e-127 | 369 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0160910 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160910 | MtrunA17_Chr1g0174161 | 94.286 | 210 | 12 | 0 | 1 | 210 | 1 | 210 | 2.29e-129 | 367 |
| Msa0160910 | MtrunA17_Chr7g0258161 | 61.135 | 229 | 64 | 7 | 1 | 210 | 1 | 223 | 4.98e-69 | 214 |
| Msa0160910 | MtrunA17_Chr1g0152131 | 43.548 | 124 | 56 | 3 | 87 | 210 | 201 | 310 | 1.56e-21 | 91.7 |
| Msa0160910 | MtrunA17_Chr7g0234761 | 44.000 | 125 | 52 | 4 | 104 | 210 | 243 | 367 | 2.82e-21 | 91.3 |
| Msa0160910 | MtrunA17_Chr5g0415291 | 44.340 | 106 | 59 | 0 | 105 | 210 | 57 | 162 | 4.87e-21 | 87.8 |
| Msa0160910 | MtrunA17_Chr8g0363921 | 70.370 | 54 | 16 | 0 | 157 | 210 | 148 | 201 | 7.95e-21 | 87.8 |
| Msa0160910 | MtrunA17_Chr8g0339091 | 70.370 | 54 | 16 | 0 | 157 | 210 | 288 | 341 | 2.78e-20 | 88.2 |
| Msa0160910 | MtrunA17_Chr4g0035101 | 47.059 | 102 | 47 | 3 | 115 | 210 | 93 | 193 | 4.89e-20 | 86.7 |
| Msa0160910 | MtrunA17_Chr8g0385911 | 62.903 | 62 | 21 | 1 | 151 | 210 | 134 | 195 | 8.84e-20 | 85.9 |
| Msa0160910 | MtrunA17_Chr8g0365941 | 49.485 | 97 | 40 | 3 | 117 | 210 | 265 | 355 | 1.87e-19 | 85.9 |
| Msa0160910 | MtrunA17_Chr3g0131771 | 66.667 | 54 | 18 | 0 | 157 | 210 | 144 | 197 | 8.34e-19 | 83.2 |
| Msa0160910 | MtrunA17_Chr3g0144641 | 81.395 | 43 | 8 | 0 | 157 | 199 | 188 | 230 | 8.43e-19 | 83.6 |
| Msa0160910 | MtrunA17_Chr5g0421111 | 66.667 | 54 | 18 | 0 | 157 | 210 | 362 | 415 | 3.64e-18 | 82.4 |
| Msa0160910 | MtrunA17_Chr6g0484271 | 37.121 | 132 | 64 | 3 | 82 | 210 | 90 | 205 | 3.10e-17 | 78.2 |
| Msa0160910 | MtrunA17_Chr4g0074161 | 54.237 | 59 | 27 | 0 | 156 | 214 | 202 | 260 | 1.42e-13 | 68.9 |
| Msa0160910 | MtrunA17_Chr1g0190731 | 54.545 | 55 | 25 | 0 | 160 | 214 | 193 | 247 | 3.64e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0160910 | AT3G57800.2 | 46.694 | 242 | 90 | 8 | 2 | 210 | 19 | 254 | 6.94e-49 | 164 |
| Msa0160910 | AT3G57800.1 | 48.347 | 242 | 86 | 8 | 2 | 210 | 19 | 254 | 1.29e-47 | 162 |
| Msa0160910 | AT2G42300.2 | 45.982 | 224 | 76 | 7 | 6 | 201 | 20 | 226 | 4.35e-45 | 150 |
| Msa0160910 | AT2G42300.4 | 43.777 | 233 | 86 | 7 | 6 | 210 | 20 | 235 | 3.94e-44 | 149 |
| Msa0160910 | AT2G42300.5 | 45.946 | 222 | 75 | 7 | 6 | 199 | 20 | 224 | 8.67e-44 | 146 |
| Msa0160910 | AT2G42300.3 | 45.946 | 222 | 75 | 7 | 6 | 199 | 20 | 224 | 8.67e-44 | 146 |
| Msa0160910 | AT2G42300.1 | 43.777 | 233 | 86 | 7 | 6 | 210 | 20 | 235 | 2.97e-43 | 148 |
| Msa0160910 | AT3G07340.1 | 38.596 | 171 | 74 | 5 | 71 | 210 | 138 | 308 | 9.06e-23 | 95.5 |
| Msa0160910 | AT3G07340.2 | 38.596 | 171 | 74 | 5 | 71 | 210 | 138 | 308 | 1.13e-22 | 95.1 |
| Msa0160910 | AT3G23690.1 | 50.000 | 100 | 42 | 3 | 117 | 210 | 144 | 241 | 4.23e-21 | 90.1 |
| Msa0160910 | AT2G18300.2 | 47.368 | 95 | 33 | 1 | 122 | 199 | 130 | 224 | 4.84e-21 | 89.7 |
| Msa0160910 | AT2G18300.1 | 47.368 | 95 | 33 | 1 | 122 | 199 | 130 | 224 | 5.51e-21 | 89.4 |
| Msa0160910 | AT2G18300.3 | 47.368 | 95 | 33 | 1 | 122 | 199 | 130 | 224 | 7.55e-21 | 89.4 |
| Msa0160910 | AT1G59640.1 | 70.370 | 54 | 16 | 0 | 157 | 210 | 133 | 186 | 9.96e-21 | 87.8 |
| Msa0160910 | AT1G26260.4 | 33.654 | 208 | 82 | 7 | 58 | 210 | 67 | 273 | 2.65e-20 | 88.2 |
| Msa0160910 | AT1G26260.1 | 33.654 | 208 | 82 | 7 | 58 | 210 | 67 | 273 | 2.65e-20 | 88.2 |
| Msa0160910 | AT1G26260.6 | 33.654 | 208 | 82 | 7 | 58 | 210 | 67 | 273 | 2.65e-20 | 88.2 |
| Msa0160910 | AT1G26260.2 | 33.654 | 208 | 82 | 7 | 58 | 210 | 67 | 273 | 2.65e-20 | 88.2 |
| Msa0160910 | AT5G48560.2 | 70.370 | 54 | 16 | 0 | 157 | 210 | 298 | 351 | 6.02e-20 | 87.8 |
| Msa0160910 | AT5G48560.1 | 70.370 | 54 | 16 | 0 | 157 | 210 | 298 | 351 | 6.27e-20 | 87.8 |
| Msa0160910 | AT5G50915.3 | 47.059 | 102 | 45 | 3 | 114 | 210 | 89 | 186 | 9.54e-20 | 85.1 |
| Msa0160910 | AT5G50915.4 | 47.059 | 102 | 45 | 3 | 114 | 210 | 89 | 186 | 9.54e-20 | 85.1 |
| Msa0160910 | AT5G50915.1 | 47.059 | 102 | 45 | 3 | 114 | 210 | 89 | 186 | 1.31e-19 | 85.1 |
| Msa0160910 | AT5G50915.2 | 47.059 | 102 | 45 | 3 | 114 | 210 | 89 | 186 | 1.31e-19 | 85.1 |
| Msa0160910 | AT1G59640.2 | 86.047 | 43 | 6 | 0 | 157 | 199 | 133 | 175 | 1.44e-19 | 85.9 |
| Msa0160910 | AT1G10120.2 | 49.438 | 89 | 41 | 2 | 125 | 210 | 169 | 256 | 3.55e-19 | 84.7 |
| Msa0160910 | AT1G10120.1 | 49.438 | 89 | 41 | 2 | 125 | 210 | 169 | 256 | 3.55e-19 | 84.7 |
| Msa0160910 | AT4G36540.1 | 48.913 | 92 | 40 | 2 | 115 | 199 | 89 | 180 | 3.95e-19 | 84.0 |
| Msa0160910 | AT4G36540.2 | 48.913 | 92 | 40 | 2 | 115 | 199 | 89 | 180 | 4.31e-19 | 84.0 |
| Msa0160910 | AT1G26260.3 | 46.465 | 99 | 44 | 2 | 121 | 210 | 124 | 222 | 5.92e-19 | 84.0 |
| Msa0160910 | AT1G68920.1 | 66.667 | 54 | 18 | 0 | 157 | 210 | 300 | 353 | 1.16e-18 | 84.0 |
| Msa0160910 | AT1G68920.4 | 66.667 | 54 | 18 | 0 | 157 | 210 | 300 | 353 | 1.16e-18 | 84.0 |
| Msa0160910 | AT1G68920.2 | 66.667 | 54 | 18 | 0 | 157 | 210 | 300 | 353 | 1.16e-18 | 84.0 |
| Msa0160910 | AT1G68920.3 | 66.667 | 54 | 18 | 0 | 157 | 210 | 299 | 352 | 1.17e-18 | 84.0 |
| Msa0160910 | AT1G26260.5 | 40.323 | 124 | 60 | 3 | 101 | 210 | 128 | 251 | 1.24e-18 | 83.6 |
| Msa0160910 | AT4G34530.1 | 60.345 | 58 | 23 | 0 | 153 | 210 | 165 | 222 | 1.31e-18 | 83.2 |
| Msa0160910 | AT1G25330.1 | 64.151 | 53 | 19 | 0 | 158 | 210 | 102 | 154 | 7.57e-18 | 79.3 |
| Msa0160910 | AT5G62610.2 | 59.259 | 54 | 22 | 0 | 157 | 210 | 150 | 203 | 1.67e-17 | 79.3 |
| Msa0160910 | AT5G62610.1 | 59.259 | 54 | 22 | 0 | 157 | 210 | 150 | 203 | 1.67e-17 | 79.3 |
| Msa0160910 | AT1G18400.2 | 60.377 | 53 | 21 | 0 | 158 | 210 | 143 | 195 | 2.12e-16 | 75.5 |
| Msa0160910 | AT1G18400.1 | 60.377 | 53 | 21 | 0 | 158 | 210 | 143 | 195 | 3.34e-16 | 75.5 |
| Msa0160910 | AT1G73830.2 | 59.615 | 52 | 21 | 0 | 159 | 210 | 146 | 197 | 2.65e-15 | 72.8 |
| Msa0160910 | AT1G73830.1 | 59.615 | 52 | 21 | 0 | 159 | 210 | 146 | 197 | 2.71e-15 | 72.8 |
| Msa0160910 | AT2G24260.2 | 54.545 | 55 | 25 | 0 | 160 | 214 | 35 | 89 | 1.59e-13 | 67.8 |
| Msa0160910 | AT4G30980.1 | 56.364 | 55 | 24 | 0 | 160 | 214 | 130 | 184 | 4.60e-13 | 67.4 |
| Msa0160910 | AT2G24260.1 | 54.545 | 55 | 25 | 0 | 160 | 214 | 138 | 192 | 7.05e-13 | 67.0 |
| Msa0160910 | AT4G30980.2 | 56.364 | 55 | 24 | 0 | 160 | 214 | 178 | 232 | 7.05e-13 | 67.0 |
| Msa0160910 | AT5G58010.1 | 56.364 | 55 | 24 | 0 | 160 | 214 | 99 | 153 | 7.96e-13 | 66.6 |
| Msa0160910 | AT2G20180.7 | 37.374 | 99 | 48 | 2 | 117 | 212 | 172 | 259 | 8.81e-11 | 60.8 |
| Msa0160910 | AT2G20180.1 | 37.374 | 99 | 48 | 2 | 117 | 212 | 172 | 259 | 8.81e-11 | 60.8 |
| Msa0160910 | AT2G20180.5 | 37.374 | 99 | 48 | 2 | 117 | 212 | 172 | 259 | 8.81e-11 | 60.8 |
| Msa0160910 | AT2G20180.8 | 37.374 | 99 | 48 | 2 | 117 | 212 | 243 | 330 | 8.86e-11 | 60.8 |
Find 77 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCCTCTTCGCACTCT+TGG | 0.267664 | 1_4:-34644752 | None:intergenic |
| GGAGAATGAAGGAGGGAAAG+AGG | 0.299691 | 1_4:-34644291 | None:intergenic |
| CTTCACTCGTCGGAGATTAC+CGG | 0.335175 | 1_4:+34644520 | Msa0160910:CDS |
| TGAAGATTAACATCTTAAAA+AGG | 0.338699 | 1_4:-34645682 | None:intergenic |
| CGGAAGCTCCTCGCCGTTGC+CGG | 0.341941 | 1_4:-34644930 | None:intergenic |
| AGAATGAAGGAGGGAAAGAG+GGG | 0.348996 | 1_4:-34644289 | None:intergenic |
| GTTTGGATATCTCATATAAA+CGG | 0.356627 | 1_4:-34644141 | None:intergenic |
| AGTTAACTGTGTAAGTTGTT+GGG | 0.367223 | 1_4:-34644315 | None:intergenic |
| GAGAATGAAGGAGGGAAAGA+GGG | 0.368426 | 1_4:-34644290 | None:intergenic |
| TTTCTCAAACCGGTTCATTT+CGG | 0.375009 | 1_4:+34644351 | Msa0160910:five_prime_UTR |
| GTTCTGTGTTGGTTCTTCTC+TGG | 0.383542 | 1_4:-34644213 | None:intergenic |
| TCCCAGGTTGCAACAAGGTT+TGG | 0.386894 | 1_4:+34645648 | Msa0160910:CDS |
| TCCGGCGAAAACGGAGAATC+TGG | 0.391498 | 1_4:-34644626 | None:intergenic |
| GGAAGGAAAAGTTAAATTAC+CGG | 0.394123 | 1_4:-34644578 | None:intergenic |
| ATCGCCGCCGACGAGAATTC+CGG | 0.408348 | 1_4:+34644911 | Msa0160910:CDS |
| CGGTAAGTTCGGCGAGTTTG+TGG | 0.414209 | 1_4:-34644656 | None:intergenic |
| GAGTTCGCTGTTTCCGTCGC+CGG | 0.429642 | 1_4:-34644451 | None:intergenic |
| TTTGGATATCTCATATAAAC+GGG | 0.441271 | 1_4:-34644140 | None:intergenic |
| TCCTTCACCTGCGGTAAGTT+CGG | 0.445738 | 1_4:-34644667 | None:intergenic |
| CAAGTAAGTGGATAGGGTTT+CGG | 0.446641 | 1_4:-34644550 | None:intergenic |
| CAAACCGGTTCATTTCGGTT+TGG | 0.446795 | 1_4:+34644356 | Msa0160910:five_prime_UTR |
| CGAAGAAATTCAAGGAATCA+TGG | 0.453331 | 1_4:+34644426 | Msa0160910:CDS |
| GACCAAACCTTGTTGCAACC+TGG | 0.459346 | 1_4:-34645650 | None:intergenic |
| ATAATGTGCTTGTTCTGTGT+TGG | 0.461228 | 1_4:-34644224 | None:intergenic |
| GAGGGGAGAAAGAAAGAGAG+TGG | 0.461744 | 1_4:-34644272 | None:intergenic |
| GTTTGAGAAAACTTGAAAAC+CGG | 0.466672 | 1_4:-34644338 | None:intergenic |
| GAGTTAACTGTGTAAGTTGT+TGG | 0.466741 | 1_4:-34644316 | None:intergenic |
| AATGAAACTGTTGCAAGAGC+TGG | 0.476800 | 1_4:+34645625 | Msa0160910:CDS |
| CAATTCAACGAAGAAATTCA+AGG | 0.489910 | 1_4:+34644418 | Msa0160910:CDS |
| TGAACCAAACCGAAATGAAC+CGG | 0.491780 | 1_4:-34644360 | None:intergenic |
| TTACCCTTTCTGCTAAGCTA+TGG | 0.495150 | 1_4:-34644994 | None:intergenic |
| ACCAAACCTTGTTGCAACCT+GGG | 0.495296 | 1_4:-34645649 | None:intergenic |
| GAGGAAGGAACGAGAGAAGA+AGG | 0.495426 | 1_4:+34644765 | Msa0160910:CDS |
| CTGTTGCAAGAGCTGGTCCC+AGG | 0.513301 | 1_4:+34645632 | Msa0160910:CDS |
| AGGAATCATGGCTCCGGCGA+CGG | 0.514735 | 1_4:+34644438 | Msa0160910:CDS |
| TAGCCATAGCTTAGCAGAAA+GGG | 0.520877 | 1_4:+34644991 | Msa0160910:CDS |
| GTGTTACAAGTAAGTGGATA+GGG | 0.524568 | 1_4:-34644556 | None:intergenic |
| TTACCGGTGTTACAAGTAAG+TGG | 0.531110 | 1_4:-34644562 | None:intergenic |
| AAAACAACGTTGTTACGCTA+CGG | 0.546411 | 1_4:-34644173 | None:intergenic |
| GTTAACTGTGTAAGTTGTTG+GGG | 0.546502 | 1_4:-34644314 | None:intergenic |
| TCAACCAACGCGGCGTTGGA+AGG | 0.547699 | 1_4:-34644595 | None:intergenic |
| CATCCACCTTCTTCAGTCTC+CGG | 0.551105 | 1_4:-34644697 | None:intergenic |
| AATTCAAGGAATCATGGCTC+CGG | 0.553332 | 1_4:+34644432 | Msa0160910:CDS |
| GGTGTTACAAGTAAGTGGAT+AGG | 0.563026 | 1_4:-34644557 | None:intergenic |
| AGACAATTTAGACTAAATCA+TGG | 0.564189 | 1_4:-34645754 | None:intergenic |
| GCCGACGAGAATTCCGGCAA+CGG | 0.567888 | 1_4:+34644917 | Msa0160910:CDS |
| GAGCTACCGGAGACTGAAGA+AGG | 0.570935 | 1_4:+34644691 | Msa0160910:CDS |
| TTCCAAGAGTGCGAAGAGGA+AGG | 0.571829 | 1_4:+34644750 | Msa0160910:CDS |
| TGTTGAACTTCTTCACTCGT+CGG | 0.572770 | 1_4:+34644510 | Msa0160910:CDS |
| GCAGGTGAAGGATGAGCTAC+CGG | 0.582554 | 1_4:+34644678 | Msa0160910:CDS |
| GCCGAACTTACCGCAGGTGA+AGG | 0.584799 | 1_4:+34644666 | Msa0160910:CDS |
| GCGTTCAACCAACGCGGCGT+TGG | 0.594819 | 1_4:-34644599 | None:intergenic |
| GCCGTTGCCGGAATTCTCGT+CGG | 0.595821 | 1_4:-34644918 | None:intergenic |
| ACAACTTACACAGTTAACTC+CGG | 0.599212 | 1_4:+34644319 | Msa0160910:five_prime_UTR |
| ATAGCCATAGCTTAGCAGAA+AGG | 0.599793 | 1_4:+34644990 | Msa0160910:CDS |
| CGAACTCGAACGTGAACGTA+CGG | 0.605120 | 1_4:-34644950 | None:intergenic |
| GAATTGAATCGACTCGAACG+TGG | 0.610167 | 1_4:-34644401 | None:intergenic |
| AGTTCAACAACCTGCGTCGG+TGG | 0.615170 | 1_4:-34644496 | None:intergenic |
| GGTTTGGTTCAGTTGAACGA+TGG | 0.616544 | 1_4:+34644372 | Msa0160910:exon |
| TAACTGTGTAAGTTGTTGGG+GGG | 0.622796 | 1_4:-34644312 | None:intergenic |
| TGGATGTGTCTCTGATCCAA+CGG | 0.628322 | 1_4:+34644714 | Msa0160910:CDS |
| CGAGAATTCCGGCAACGGCG+AGG | 0.633666 | 1_4:+34644922 | Msa0160910:CDS |
| CGGTGGTAGTTCGAGAAGTG+CGG | 0.644635 | 1_4:-34644479 | None:intergenic |
| GTAAGTGGATAGGGTTTCGG+CGG | 0.645408 | 1_4:-34644547 | None:intergenic |
| TCTCGAACTACCACCGACGC+AGG | 0.645573 | 1_4:+34644486 | Msa0160910:CDS |
| TTAACTGTGTAAGTTGTTGG+GGG | 0.647591 | 1_4:-34644313 | None:intergenic |
| GGCGAAAACGGAGAATCTGG+CGG | 0.648507 | 1_4:-34644623 | None:intergenic |
| CTACCGGAGACTGAAGAAGG+TGG | 0.649449 | 1_4:+34644694 | Msa0160910:CDS |
| TATCCACTTACTTGTAACAC+CGG | 0.653561 | 1_4:+34644559 | Msa0160910:CDS |
| GCTGGTCCCAGGTTGCAACA+AGG | 0.662336 | 1_4:+34645643 | Msa0160910:CDS |
| CGAATTCCAAGAGTGCGAAG+AGG | 0.670718 | 1_4:+34644746 | Msa0160910:CDS |
| AGAAGTTCAACAACCTGCGT+CGG | 0.673010 | 1_4:-34644499 | None:intergenic |
| AAACTCGCCGAACTTACCGC+AGG | 0.673662 | 1_4:+34644660 | Msa0160910:CDS |
| GGTAGCTCATCCTTCACCTG+CGG | 0.677655 | 1_4:-34644676 | None:intergenic |
| GTTGCCGGAATTCTCGTCGG+CGG | 0.688782 | 1_4:-34644915 | None:intergenic |
| GGCGGCGCGTTCAACCAACG+CGG | 0.742023 | 1_4:-34644605 | None:intergenic |
| GTTCACGTTCGAGTTCGACG+AGG | 0.757130 | 1_4:+34644956 | Msa0160910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr1_4:34645446-34645465 | Msa0160910:intron | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr1_4:34645446-34645465 | Msa0160910:intron | 0.0% |
| !! | ATAAAAAGTTATGAATTTAA+TGG | - | chr1_4:34645392-34645411 | None:intergenic | 10.0% |
| !! | TTAATGTAATAATATATCAT+CGG | + | chr1_4:34645422-34645441 | Msa0160910:intron | 10.0% |
| !! | ATAAAAAGTTATGAATTTAA+TGG | - | chr1_4:34645392-34645411 | None:intergenic | 10.0% |
| !! | TTAATGTAATAATATATCAT+CGG | + | chr1_4:34645422-34645441 | Msa0160910:intron | 10.0% |
| !! | AAATAAAAAATTGAGTTTAG+TGG | + | chr1_4:34645251-34645270 | Msa0160910:intron | 15.0% |
| !! | AAATAAAAAATTGAGTTTAG+TGG | + | chr1_4:34645251-34645270 | Msa0160910:intron | 15.0% |
| !!! | TTGCACTTAGAATTAATTTT+AGG | + | chr1_4:34645119-34645138 | Msa0160910:intron | 20.0% |
| !! | TTTCAAAAGATTATATGATG+TGG | + | chr1_4:34645165-34645184 | Msa0160910:intron | 20.0% |
| !!! | TTTTAATTAGAATACTCTGA+CGG | - | chr1_4:34645229-34645248 | None:intergenic | 20.0% |
| !! | AAAAATATTAATTGATACGG+TGG | + | chr1_4:34645345-34645364 | Msa0160910:intron | 20.0% |
| !! | AAAAGTTATGAATTTAATGG+TGG | - | chr1_4:34645389-34645408 | None:intergenic | 20.0% |
| !!! | TTTTAATTTGATTGTGTTGT+AGG | + | chr1_4:34645577-34645596 | Msa0160910:intron | 20.0% |
| !! | TGAAGATTAACATCTTAAAA+AGG | - | chr1_4:34645685-34645704 | None:intergenic | 20.0% |
| !!! | ACAATAGTACTTTTAGTTTT+AGG | - | chr1_4:34645780-34645799 | None:intergenic | 20.0% |
| !!! | TTGCACTTAGAATTAATTTT+AGG | + | chr1_4:34645119-34645138 | Msa0160910:intron | 20.0% |
| !! | TTTCAAAAGATTATATGATG+TGG | + | chr1_4:34645165-34645184 | Msa0160910:intron | 20.0% |
| !!! | TTTTAATTAGAATACTCTGA+CGG | - | chr1_4:34645229-34645248 | None:intergenic | 20.0% |
| !! | AAAAATATTAATTGATACGG+TGG | + | chr1_4:34645345-34645364 | Msa0160910:intron | 20.0% |
| !! | AAAAGTTATGAATTTAATGG+TGG | - | chr1_4:34645389-34645408 | None:intergenic | 20.0% |
| !!! | TTTTAATTTGATTGTGTTGT+AGG | + | chr1_4:34645577-34645596 | Msa0160910:intron | 20.0% |
| !! | TGAAGATTAACATCTTAAAA+AGG | - | chr1_4:34645685-34645704 | None:intergenic | 20.0% |
| !!! | ACAATAGTACTTTTAGTTTT+AGG | - | chr1_4:34645780-34645799 | None:intergenic | 20.0% |
| ! | TTTGGATATCTCATATAAAC+GGG | - | chr1_4:34644143-34644162 | None:intergenic | 25.0% |
| ! | GTTTGGATATCTCATATAAA+CGG | - | chr1_4:34644144-34644163 | None:intergenic | 25.0% |
| ! | ACGAACTCAATTGAAAAATT+AGG | + | chr1_4:34644805-34644824 | Msa0160910:intron | 25.0% |
| ! | CGAACTCAATTGAAAAATTA+GGG | + | chr1_4:34644806-34644825 | Msa0160910:intron | 25.0% |
| ! | TAAAAAATTGAGTTTAGTGG+TGG | + | chr1_4:34645254-34645273 | Msa0160910:intron | 25.0% |
| ! | CATCTTAAAAAGGAATGAAA+AGG | - | chr1_4:34645675-34645694 | None:intergenic | 25.0% |
| ! | AGACAATTTAGACTAAATCA+TGG | - | chr1_4:34645757-34645776 | None:intergenic | 25.0% |
| ! | TTTGGATATCTCATATAAAC+GGG | - | chr1_4:34644143-34644162 | None:intergenic | 25.0% |
| ! | GTTTGGATATCTCATATAAA+CGG | - | chr1_4:34644144-34644163 | None:intergenic | 25.0% |
| ! | ACGAACTCAATTGAAAAATT+AGG | + | chr1_4:34644805-34644824 | Msa0160910:intron | 25.0% |
| ! | CGAACTCAATTGAAAAATTA+GGG | + | chr1_4:34644806-34644825 | Msa0160910:intron | 25.0% |
| ! | TAAAAAATTGAGTTTAGTGG+TGG | + | chr1_4:34645254-34645273 | Msa0160910:intron | 25.0% |
| ! | CATCTTAAAAAGGAATGAAA+AGG | - | chr1_4:34645675-34645694 | None:intergenic | 25.0% |
| ! | AGACAATTTAGACTAAATCA+TGG | - | chr1_4:34645757-34645776 | None:intergenic | 25.0% |
| AGTTAACTGTGTAAGTTGTT+GGG | - | chr1_4:34644318-34644337 | None:intergenic | 30.0% | |
| GTTTGAGAAAACTTGAAAAC+CGG | - | chr1_4:34644341-34644360 | None:intergenic | 30.0% | |
| !!! | GTTTTCAAGTTTTCTCAAAC+CGG | + | chr1_4:34644341-34644360 | Msa0160910:five_prime_UTR | 30.0% |
| CAATTCAACGAAGAAATTCA+AGG | + | chr1_4:34644418-34644437 | Msa0160910:CDS | 30.0% | |
| GGAAGGAAAAGTTAAATTAC+CGG | - | chr1_4:34644581-34644600 | None:intergenic | 30.0% | |
| TCTGAATTTCTCACTAATTG+AGG | + | chr1_4:34644832-34644851 | Msa0160910:intron | 30.0% | |
| CTGAATTTCTCACTAATTGA+GGG | + | chr1_4:34644833-34644852 | Msa0160910:intron | 30.0% | |
| ! | ATGATGTGGCAGATTTTTAT+TGG | + | chr1_4:34645179-34645198 | Msa0160910:intron | 30.0% |
| GTTATGAATTTAATGGTGGT+GGG | - | chr1_4:34645385-34645404 | None:intergenic | 30.0% | |
| AGTTATGAATTTAATGGTGG+TGG | - | chr1_4:34645386-34645405 | None:intergenic | 30.0% | |
| AGTTAACTGTGTAAGTTGTT+GGG | - | chr1_4:34644318-34644337 | None:intergenic | 30.0% | |
| GTTTGAGAAAACTTGAAAAC+CGG | - | chr1_4:34644341-34644360 | None:intergenic | 30.0% | |
| !!! | GTTTTCAAGTTTTCTCAAAC+CGG | + | chr1_4:34644341-34644360 | Msa0160910:five_prime_UTR | 30.0% |
| CAATTCAACGAAGAAATTCA+AGG | + | chr1_4:34644418-34644437 | Msa0160910:CDS | 30.0% | |
| GGAAGGAAAAGTTAAATTAC+CGG | - | chr1_4:34644581-34644600 | None:intergenic | 30.0% | |
| TCTGAATTTCTCACTAATTG+AGG | + | chr1_4:34644832-34644851 | Msa0160910:intron | 30.0% | |
| CTGAATTTCTCACTAATTGA+GGG | + | chr1_4:34644833-34644852 | Msa0160910:intron | 30.0% | |
| ! | ATGATGTGGCAGATTTTTAT+TGG | + | chr1_4:34645179-34645198 | Msa0160910:intron | 30.0% |
| GTTATGAATTTAATGGTGGT+GGG | - | chr1_4:34645385-34645404 | None:intergenic | 30.0% | |
| AGTTATGAATTTAATGGTGG+TGG | - | chr1_4:34645386-34645405 | None:intergenic | 30.0% | |
| AAAACAACGTTGTTACGCTA+CGG | - | chr1_4:34644176-34644195 | None:intergenic | 35.0% | |
| ATAATGTGCTTGTTCTGTGT+TGG | - | chr1_4:34644227-34644246 | None:intergenic | 35.0% | |
| TTAACTGTGTAAGTTGTTGG+GGG | - | chr1_4:34644316-34644335 | None:intergenic | 35.0% | |
| GTTAACTGTGTAAGTTGTTG+GGG | - | chr1_4:34644317-34644336 | None:intergenic | 35.0% | |
| GAGTTAACTGTGTAAGTTGT+TGG | - | chr1_4:34644319-34644338 | None:intergenic | 35.0% | |
| ACAACTTACACAGTTAACTC+CGG | + | chr1_4:34644319-34644338 | Msa0160910:five_prime_UTR | 35.0% | |
| ! | TTTCTCAAACCGGTTCATTT+CGG | + | chr1_4:34644351-34644370 | Msa0160910:five_prime_UTR | 35.0% |
| CGAAGAAATTCAAGGAATCA+TGG | + | chr1_4:34644426-34644445 | Msa0160910:CDS | 35.0% | |
| GTGTTACAAGTAAGTGGATA+GGG | - | chr1_4:34644559-34644578 | None:intergenic | 35.0% | |
| TATCCACTTACTTGTAACAC+CGG | + | chr1_4:34644559-34644578 | Msa0160910:CDS | 35.0% | |
| AAAATTGAGTTTAGTGGTGG+TGG | + | chr1_4:34645257-34645276 | Msa0160910:intron | 35.0% | |
| ATTTGATTGTGTTGTAGGCT+AGG | + | chr1_4:34645582-34645601 | Msa0160910:intron | 35.0% | |
| AAAACAACGTTGTTACGCTA+CGG | - | chr1_4:34644176-34644195 | None:intergenic | 35.0% | |
| ATAATGTGCTTGTTCTGTGT+TGG | - | chr1_4:34644227-34644246 | None:intergenic | 35.0% | |
| TTAACTGTGTAAGTTGTTGG+GGG | - | chr1_4:34644316-34644335 | None:intergenic | 35.0% | |
| GTTAACTGTGTAAGTTGTTG+GGG | - | chr1_4:34644317-34644336 | None:intergenic | 35.0% | |
| GAGTTAACTGTGTAAGTTGT+TGG | - | chr1_4:34644319-34644338 | None:intergenic | 35.0% | |
| ACAACTTACACAGTTAACTC+CGG | + | chr1_4:34644319-34644338 | Msa0160910:five_prime_UTR | 35.0% | |
| ! | TTTCTCAAACCGGTTCATTT+CGG | + | chr1_4:34644351-34644370 | Msa0160910:five_prime_UTR | 35.0% |
| CGAAGAAATTCAAGGAATCA+TGG | + | chr1_4:34644426-34644445 | Msa0160910:CDS | 35.0% | |
| GTGTTACAAGTAAGTGGATA+GGG | - | chr1_4:34644559-34644578 | None:intergenic | 35.0% | |
| TATCCACTTACTTGTAACAC+CGG | + | chr1_4:34644559-34644578 | Msa0160910:CDS | 35.0% | |
| AAAATTGAGTTTAGTGGTGG+TGG | + | chr1_4:34645257-34645276 | Msa0160910:intron | 35.0% | |
| ATTTGATTGTGTTGTAGGCT+AGG | + | chr1_4:34645582-34645601 | Msa0160910:intron | 35.0% | |
| !!! | TGTTACGCTACGGTTTTGTT+TGG | - | chr1_4:34644166-34644185 | None:intergenic | 40.0% |
| TAACTGTGTAAGTTGTTGGG+GGG | - | chr1_4:34644315-34644334 | None:intergenic | 40.0% | |
| TGAACCAAACCGAAATGAAC+CGG | - | chr1_4:34644363-34644382 | None:intergenic | 40.0% | |
| AATTCAAGGAATCATGGCTC+CGG | + | chr1_4:34644432-34644451 | Msa0160910:CDS | 40.0% | |
| TGTTGAACTTCTTCACTCGT+CGG | + | chr1_4:34644510-34644529 | Msa0160910:CDS | 40.0% | |
| CAAGTAAGTGGATAGGGTTT+CGG | - | chr1_4:34644553-34644572 | None:intergenic | 40.0% | |
| ! | GGTGTTACAAGTAAGTGGAT+AGG | - | chr1_4:34644560-34644579 | None:intergenic | 40.0% |
| !! | TTACCGGTGTTACAAGTAAG+TGG | - | chr1_4:34644565-34644584 | None:intergenic | 40.0% |
| ! | CGAGTTTGTGGAATTTTCTC+CGG | - | chr1_4:34644647-34644666 | None:intergenic | 40.0% |
| ATAGCCATAGCTTAGCAGAA+AGG | + | chr1_4:34644990-34645009 | Msa0160910:CDS | 40.0% | |
| TAGCCATAGCTTAGCAGAAA+GGG | + | chr1_4:34644991-34645010 | Msa0160910:CDS | 40.0% | |
| TTACCCTTTCTGCTAAGCTA+TGG | - | chr1_4:34644997-34645016 | None:intergenic | 40.0% | |
| AATGAAACTGTTGCAAGAGC+TGG | + | chr1_4:34645625-34645644 | Msa0160910:CDS | 40.0% | |
| !!! | TGTTACGCTACGGTTTTGTT+TGG | - | chr1_4:34644166-34644185 | None:intergenic | 40.0% |
| TAACTGTGTAAGTTGTTGGG+GGG | - | chr1_4:34644315-34644334 | None:intergenic | 40.0% | |
| TGAACCAAACCGAAATGAAC+CGG | - | chr1_4:34644363-34644382 | None:intergenic | 40.0% | |
| AATTCAAGGAATCATGGCTC+CGG | + | chr1_4:34644432-34644451 | Msa0160910:CDS | 40.0% | |
| TGTTGAACTTCTTCACTCGT+CGG | + | chr1_4:34644510-34644529 | Msa0160910:CDS | 40.0% | |
| CAAGTAAGTGGATAGGGTTT+CGG | - | chr1_4:34644553-34644572 | None:intergenic | 40.0% | |
| ! | GGTGTTACAAGTAAGTGGAT+AGG | - | chr1_4:34644560-34644579 | None:intergenic | 40.0% |
| !! | TTACCGGTGTTACAAGTAAG+TGG | - | chr1_4:34644565-34644584 | None:intergenic | 40.0% |
| ! | CGAGTTTGTGGAATTTTCTC+CGG | - | chr1_4:34644647-34644666 | None:intergenic | 40.0% |
| ATAGCCATAGCTTAGCAGAA+AGG | + | chr1_4:34644990-34645009 | Msa0160910:CDS | 40.0% | |
| TAGCCATAGCTTAGCAGAAA+GGG | + | chr1_4:34644991-34645010 | Msa0160910:CDS | 40.0% | |
| TTACCCTTTCTGCTAAGCTA+TGG | - | chr1_4:34644997-34645016 | None:intergenic | 40.0% | |
| AATGAAACTGTTGCAAGAGC+TGG | + | chr1_4:34645625-34645644 | Msa0160910:CDS | 40.0% | |
| !!! | CGCTACGGTTTTGTTTGGTT+TGG | - | chr1_4:34644161-34644180 | None:intergenic | 45.0% |
| !! | GTTCTGTGTTGGTTCTTCTC+TGG | - | chr1_4:34644216-34644235 | None:intergenic | 45.0% |
| AGAATGAAGGAGGGAAAGAG+GGG | - | chr1_4:34644292-34644311 | None:intergenic | 45.0% | |
| GAGAATGAAGGAGGGAAAGA+GGG | - | chr1_4:34644293-34644312 | None:intergenic | 45.0% | |
| ! | CAAACCGGTTCATTTCGGTT+TGG | + | chr1_4:34644356-34644375 | Msa0160910:five_prime_UTR | 45.0% |
| ! | GGTTTGGTTCAGTTGAACGA+TGG | + | chr1_4:34644372-34644391 | Msa0160910:exon | 45.0% |
| !! | GAATTGAATCGACTCGAACG+TGG | - | chr1_4:34644404-34644423 | None:intergenic | 45.0% |
| AGAAGTTCAACAACCTGCGT+CGG | - | chr1_4:34644502-34644521 | None:intergenic | 45.0% | |
| ! | GGAATTTTCTCCGGCGAAAA+CGG | - | chr1_4:34644638-34644657 | None:intergenic | 45.0% |
| TGGATGTGTCTCTGATCCAA+CGG | + | chr1_4:34644714-34644733 | Msa0160910:CDS | 45.0% | |
| ! | GAATTCGTGTTTTCGACCGT+TGG | - | chr1_4:34644733-34644752 | None:intergenic | 45.0% |
| TCTCATGTTCTGTGAAACGC+AGG | + | chr1_4:34644859-34644878 | Msa0160910:intron | 45.0% | |
| !! | GTTTAGTGGTGGTGGATTGA+CGG | + | chr1_4:34645265-34645284 | Msa0160910:intron | 45.0% |
| ACCAAACCTTGTTGCAACCT+GGG | - | chr1_4:34645652-34645671 | None:intergenic | 45.0% | |
| !!! | CGCTACGGTTTTGTTTGGTT+TGG | - | chr1_4:34644161-34644180 | None:intergenic | 45.0% |
| !! | GTTCTGTGTTGGTTCTTCTC+TGG | - | chr1_4:34644216-34644235 | None:intergenic | 45.0% |
| AGAATGAAGGAGGGAAAGAG+GGG | - | chr1_4:34644292-34644311 | None:intergenic | 45.0% | |
| GAGAATGAAGGAGGGAAAGA+GGG | - | chr1_4:34644293-34644312 | None:intergenic | 45.0% | |
| ! | CAAACCGGTTCATTTCGGTT+TGG | + | chr1_4:34644356-34644375 | Msa0160910:five_prime_UTR | 45.0% |
| ! | GGTTTGGTTCAGTTGAACGA+TGG | + | chr1_4:34644372-34644391 | Msa0160910:exon | 45.0% |
| !! | GAATTGAATCGACTCGAACG+TGG | - | chr1_4:34644404-34644423 | None:intergenic | 45.0% |
| AGAAGTTCAACAACCTGCGT+CGG | - | chr1_4:34644502-34644521 | None:intergenic | 45.0% | |
| ! | GGAATTTTCTCCGGCGAAAA+CGG | - | chr1_4:34644638-34644657 | None:intergenic | 45.0% |
| TGGATGTGTCTCTGATCCAA+CGG | + | chr1_4:34644714-34644733 | Msa0160910:CDS | 45.0% | |
| ! | GAATTCGTGTTTTCGACCGT+TGG | - | chr1_4:34644733-34644752 | None:intergenic | 45.0% |
| TCTCATGTTCTGTGAAACGC+AGG | + | chr1_4:34644859-34644878 | Msa0160910:intron | 45.0% | |
| !! | GTTTAGTGGTGGTGGATTGA+CGG | + | chr1_4:34645265-34645284 | Msa0160910:intron | 45.0% |
| ACCAAACCTTGTTGCAACCT+GGG | - | chr1_4:34645652-34645671 | None:intergenic | 45.0% | |
| !! | ATTAAAAATATTAATTGATA+CGG | + | chr1_4:34645342-34645361 | Msa0160910:intron | 5.0% |
| !! | ATTAAAAATATTAATTGATA+CGG | + | chr1_4:34645342-34645361 | Msa0160910:intron | 5.0% |
| GAGGGGAGAAAGAAAGAGAG+TGG | - | chr1_4:34644275-34644294 | None:intergenic | 50.0% | |
| GGAGAATGAAGGAGGGAAAG+AGG | - | chr1_4:34644294-34644313 | None:intergenic | 50.0% | |
| AGTTGTTGGGGGGAGAATGA+AGG | - | chr1_4:34644305-34644324 | None:intergenic | 50.0% | |
| CTTCACTCGTCGGAGATTAC+CGG | + | chr1_4:34644520-34644539 | Msa0160910:CDS | 50.0% | |
| ! | ATAGGGTTTCGGCGGTTTTC+CGG | - | chr1_4:34644542-34644561 | None:intergenic | 50.0% |
| GTAAGTGGATAGGGTTTCGG+CGG | - | chr1_4:34644550-34644569 | None:intergenic | 50.0% | |
| TCCTTCACCTGCGGTAAGTT+CGG | - | chr1_4:34644670-34644689 | None:intergenic | 50.0% | |
| CATCCACCTTCTTCAGTCTC+CGG | - | chr1_4:34644700-34644719 | None:intergenic | 50.0% | |
| ! | CGAATTCCAAGAGTGCGAAG+AGG | + | chr1_4:34644746-34644765 | Msa0160910:CDS | 50.0% |
| ! | TTCCAAGAGTGCGAAGAGGA+AGG | + | chr1_4:34644750-34644769 | Msa0160910:CDS | 50.0% |
| TTCCTTCCTCTTCGCACTCT+TGG | - | chr1_4:34644755-34644774 | None:intergenic | 50.0% | |
| GAGGAAGGAACGAGAGAAGA+AGG | + | chr1_4:34644765-34644784 | Msa0160910:CDS | 50.0% | |
| CGAACTCGAACGTGAACGTA+CGG | - | chr1_4:34644953-34644972 | None:intergenic | 50.0% | |
| TCCCAGGTTGCAACAAGGTT+TGG | + | chr1_4:34645648-34645667 | Msa0160910:CDS | 50.0% | |
| GACCAAACCTTGTTGCAACC+TGG | - | chr1_4:34645653-34645672 | None:intergenic | 50.0% | |
| GAGGGGAGAAAGAAAGAGAG+TGG | - | chr1_4:34644275-34644294 | None:intergenic | 50.0% | |
| GGAGAATGAAGGAGGGAAAG+AGG | - | chr1_4:34644294-34644313 | None:intergenic | 50.0% | |
| AGTTGTTGGGGGGAGAATGA+AGG | - | chr1_4:34644305-34644324 | None:intergenic | 50.0% | |
| CTTCACTCGTCGGAGATTAC+CGG | + | chr1_4:34644520-34644539 | Msa0160910:CDS | 50.0% | |
| ! | ATAGGGTTTCGGCGGTTTTC+CGG | - | chr1_4:34644542-34644561 | None:intergenic | 50.0% |
| GTAAGTGGATAGGGTTTCGG+CGG | - | chr1_4:34644550-34644569 | None:intergenic | 50.0% | |
| TCCTTCACCTGCGGTAAGTT+CGG | - | chr1_4:34644670-34644689 | None:intergenic | 50.0% | |
| CATCCACCTTCTTCAGTCTC+CGG | - | chr1_4:34644700-34644719 | None:intergenic | 50.0% | |
| ! | CGAATTCCAAGAGTGCGAAG+AGG | + | chr1_4:34644746-34644765 | Msa0160910:CDS | 50.0% |
| ! | TTCCAAGAGTGCGAAGAGGA+AGG | + | chr1_4:34644750-34644769 | Msa0160910:CDS | 50.0% |
| TTCCTTCCTCTTCGCACTCT+TGG | - | chr1_4:34644755-34644774 | None:intergenic | 50.0% | |
| GAGGAAGGAACGAGAGAAGA+AGG | + | chr1_4:34644765-34644784 | Msa0160910:CDS | 50.0% | |
| CGAACTCGAACGTGAACGTA+CGG | - | chr1_4:34644953-34644972 | None:intergenic | 50.0% | |
| TCCCAGGTTGCAACAAGGTT+TGG | + | chr1_4:34645648-34645667 | Msa0160910:CDS | 50.0% | |
| GACCAAACCTTGTTGCAACC+TGG | - | chr1_4:34645653-34645672 | None:intergenic | 50.0% | |
| GTTGGGGGGAGAATGAAGGA+GGG | - | chr1_4:34644301-34644320 | None:intergenic | 55.0% | |
| TGTTGGGGGGAGAATGAAGG+AGG | - | chr1_4:34644302-34644321 | None:intergenic | 55.0% | |
| CGGTGGTAGTTCGAGAAGTG+CGG | - | chr1_4:34644482-34644501 | None:intergenic | 55.0% | |
| AGTTCAACAACCTGCGTCGG+TGG | - | chr1_4:34644499-34644518 | None:intergenic | 55.0% | |
| ! | TTTTCCTTCCAACGCCGCGT+TGG | + | chr1_4:34644591-34644610 | Msa0160910:CDS | 55.0% |
| GGCGAAAACGGAGAATCTGG+CGG | - | chr1_4:34644626-34644645 | None:intergenic | 55.0% | |
| ! | GCCAGATTCTCCGTTTTCGC+CGG | + | chr1_4:34644625-34644644 | Msa0160910:CDS | 55.0% |
| TCCGGCGAAAACGGAGAATC+TGG | - | chr1_4:34644629-34644648 | None:intergenic | 55.0% | |
| CGGTAAGTTCGGCGAGTTTG+TGG | - | chr1_4:34644659-34644678 | None:intergenic | 55.0% | |
| AAACTCGCCGAACTTACCGC+AGG | + | chr1_4:34644660-34644679 | Msa0160910:CDS | 55.0% | |
| GGTAGCTCATCCTTCACCTG+CGG | - | chr1_4:34644679-34644698 | None:intergenic | 55.0% | |
| GCAGGTGAAGGATGAGCTAC+CGG | + | chr1_4:34644678-34644697 | Msa0160910:CDS | 55.0% | |
| GAGCTACCGGAGACTGAAGA+AGG | + | chr1_4:34644691-34644710 | Msa0160910:CDS | 55.0% | |
| CTACCGGAGACTGAAGAAGG+TGG | + | chr1_4:34644694-34644713 | Msa0160910:CDS | 55.0% | |
| ! | GTTCACGTTCGAGTTCGACG+AGG | + | chr1_4:34644956-34644975 | Msa0160910:CDS | 55.0% |
| GTTGGGGGGAGAATGAAGGA+GGG | - | chr1_4:34644301-34644320 | None:intergenic | 55.0% | |
| TGTTGGGGGGAGAATGAAGG+AGG | - | chr1_4:34644302-34644321 | None:intergenic | 55.0% | |
| CGGTGGTAGTTCGAGAAGTG+CGG | - | chr1_4:34644482-34644501 | None:intergenic | 55.0% | |
| AGTTCAACAACCTGCGTCGG+TGG | - | chr1_4:34644499-34644518 | None:intergenic | 55.0% | |
| ! | TTTTCCTTCCAACGCCGCGT+TGG | + | chr1_4:34644591-34644610 | Msa0160910:CDS | 55.0% |
| GGCGAAAACGGAGAATCTGG+CGG | - | chr1_4:34644626-34644645 | None:intergenic | 55.0% | |
| ! | GCCAGATTCTCCGTTTTCGC+CGG | + | chr1_4:34644625-34644644 | Msa0160910:CDS | 55.0% |
| TCCGGCGAAAACGGAGAATC+TGG | - | chr1_4:34644629-34644648 | None:intergenic | 55.0% | |
| CGGTAAGTTCGGCGAGTTTG+TGG | - | chr1_4:34644659-34644678 | None:intergenic | 55.0% | |
| AAACTCGCCGAACTTACCGC+AGG | + | chr1_4:34644660-34644679 | Msa0160910:CDS | 55.0% | |
| GGTAGCTCATCCTTCACCTG+CGG | - | chr1_4:34644679-34644698 | None:intergenic | 55.0% | |
| GCAGGTGAAGGATGAGCTAC+CGG | + | chr1_4:34644678-34644697 | Msa0160910:CDS | 55.0% | |
| GAGCTACCGGAGACTGAAGA+AGG | + | chr1_4:34644691-34644710 | Msa0160910:CDS | 55.0% | |
| CTACCGGAGACTGAAGAAGG+TGG | + | chr1_4:34644694-34644713 | Msa0160910:CDS | 55.0% | |
| ! | GTTCACGTTCGAGTTCGACG+AGG | + | chr1_4:34644956-34644975 | Msa0160910:CDS | 55.0% |
| AGGAATCATGGCTCCGGCGA+CGG | + | chr1_4:34644438-34644457 | Msa0160910:CDS | 60.0% | |
| ! | GAGTTCGCTGTTTCCGTCGC+CGG | - | chr1_4:34644454-34644473 | None:intergenic | 60.0% |
| TCTCGAACTACCACCGACGC+AGG | + | chr1_4:34644486-34644505 | Msa0160910:CDS | 60.0% | |
| ! | TCAACCAACGCGGCGTTGGA+AGG | - | chr1_4:34644598-34644617 | None:intergenic | 60.0% |
| GCCGAACTTACCGCAGGTGA+AGG | + | chr1_4:34644666-34644685 | Msa0160910:CDS | 60.0% | |
| ATCGCCGCCGACGAGAATTC+CGG | + | chr1_4:34644911-34644930 | Msa0160910:CDS | 60.0% | |
| GTTGCCGGAATTCTCGTCGG+CGG | - | chr1_4:34644918-34644937 | None:intergenic | 60.0% | |
| GCCGACGAGAATTCCGGCAA+CGG | + | chr1_4:34644917-34644936 | Msa0160910:CDS | 60.0% | |
| GCCGTTGCCGGAATTCTCGT+CGG | - | chr1_4:34644921-34644940 | None:intergenic | 60.0% | |
| CTGTTGCAAGAGCTGGTCCC+AGG | + | chr1_4:34645632-34645651 | Msa0160910:CDS | 60.0% | |
| GCTGGTCCCAGGTTGCAACA+AGG | + | chr1_4:34645643-34645662 | Msa0160910:CDS | 60.0% | |
| AGGAATCATGGCTCCGGCGA+CGG | + | chr1_4:34644438-34644457 | Msa0160910:CDS | 60.0% | |
| ! | GAGTTCGCTGTTTCCGTCGC+CGG | - | chr1_4:34644454-34644473 | None:intergenic | 60.0% |
| TCTCGAACTACCACCGACGC+AGG | + | chr1_4:34644486-34644505 | Msa0160910:CDS | 60.0% | |
| ! | TCAACCAACGCGGCGTTGGA+AGG | - | chr1_4:34644598-34644617 | None:intergenic | 60.0% |
| GCCGAACTTACCGCAGGTGA+AGG | + | chr1_4:34644666-34644685 | Msa0160910:CDS | 60.0% | |
| ATCGCCGCCGACGAGAATTC+CGG | + | chr1_4:34644911-34644930 | Msa0160910:CDS | 60.0% | |
| GTTGCCGGAATTCTCGTCGG+CGG | - | chr1_4:34644918-34644937 | None:intergenic | 60.0% | |
| GCCGACGAGAATTCCGGCAA+CGG | + | chr1_4:34644917-34644936 | Msa0160910:CDS | 60.0% | |
| GCCGTTGCCGGAATTCTCGT+CGG | - | chr1_4:34644921-34644940 | None:intergenic | 60.0% | |
| CTGTTGCAAGAGCTGGTCCC+AGG | + | chr1_4:34645632-34645651 | Msa0160910:CDS | 60.0% | |
| GCTGGTCCCAGGTTGCAACA+AGG | + | chr1_4:34645643-34645662 | Msa0160910:CDS | 60.0% | |
| GCGTTCAACCAACGCGGCGT+TGG | - | chr1_4:34644602-34644621 | None:intergenic | 65.0% | |
| CGAGAATTCCGGCAACGGCG+AGG | + | chr1_4:34644922-34644941 | Msa0160910:CDS | 65.0% | |
| GCGTTCAACCAACGCGGCGT+TGG | - | chr1_4:34644602-34644621 | None:intergenic | 65.0% | |
| CGAGAATTCCGGCAACGGCG+AGG | + | chr1_4:34644922-34644941 | Msa0160910:CDS | 65.0% | |
| GGCGGCGCGTTCAACCAACG+CGG | - | chr1_4:34644608-34644627 | None:intergenic | 70.0% | |
| CGGAAGCTCCTCGCCGTTGC+CGG | - | chr1_4:34644933-34644952 | None:intergenic | 70.0% | |
| GGCGGCGCGTTCAACCAACG+CGG | - | chr1_4:34644608-34644627 | None:intergenic | 70.0% | |
| CGGAAGCTCCTCGCCGTTGC+CGG | - | chr1_4:34644933-34644952 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 34644130 | 34645801 | 34644130 | ID=Msa0160910;Name=Msa0160910 |
| chr1_4 | mRNA | 34644130 | 34645801 | 34644130 | ID=Msa0160910-mRNA-1;Parent=Msa0160910;Name=Msa0160910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=261|1|1|1|1|1|3|83|215 |
| chr1_4 | exon | 34644130 | 34644786 | 34644130 | ID=Msa0160910-mRNA-1:exon:10595;Parent=Msa0160910-mRNA-1 |
| chr1_4 | exon | 34644881 | 34645012 | 34644881 | ID=Msa0160910-mRNA-1:exon:10596;Parent=Msa0160910-mRNA-1 |
| chr1_4 | exon | 34645599 | 34645801 | 34645599 | ID=Msa0160910-mRNA-1:exon:10597;Parent=Msa0160910-mRNA-1 |
| chr1_4 | five_prime_UTR | 34644130 | 34644390 | 34644130 | ID=Msa0160910-mRNA-1:five_prime_utr;Parent=Msa0160910-mRNA-1 |
| chr1_4 | CDS | 34644391 | 34644786 | 34644391 | ID=Msa0160910-mRNA-1:cds;Parent=Msa0160910-mRNA-1 |
| chr1_4 | CDS | 34644881 | 34645012 | 34644881 | ID=Msa0160910-mRNA-1:cds;Parent=Msa0160910-mRNA-1 |
| chr1_4 | CDS | 34645599 | 34645718 | 34645599 | ID=Msa0160910-mRNA-1:cds;Parent=Msa0160910-mRNA-1 |
| chr1_4 | three_prime_UTR | 34645719 | 34645801 | 34645719 | ID=Msa0160910-mRNA-1:three_prime_utr;Parent=Msa0160910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
