Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0161160 | sp|Q9SZL8|FRS5_ARATH | 25.871 | 603 | 396 | 13 | 50 | 638 | 72 | 637 | 1.87e-56 | 210 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0161160 | D3YBB9 | 73.704 | 810 | 145 | 6 | 14 | 771 | 54 | 847 | 0.0 | 1207 |
Gene ID | Type | Classification |
---|---|---|
Msa0161160 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0161160 | MtrunA17_Chr2g0324011 | 30.017 | 603 | 367 | 13 | 52 | 638 | 8 | 571 | 4.82e-88 | 289 |
Msa0161160 | MtrunA17_Chr3g0082121 | 29.664 | 654 | 403 | 15 | 57 | 700 | 49 | 655 | 4.99e-86 | 287 |
Msa0161160 | MtrunA17_Chr3g0088371 | 80.368 | 163 | 29 | 1 | 619 | 778 | 29 | 191 | 1.40e-82 | 261 |
Msa0161160 | MtrunA17_Chr1g0202341 | 28.859 | 596 | 378 | 12 | 50 | 635 | 50 | 609 | 1.76e-67 | 236 |
Msa0161160 | MtrunA17_Chr1g0203721 | 25.270 | 740 | 485 | 18 | 3 | 716 | 8 | 705 | 3.25e-66 | 236 |
Msa0161160 | MtrunA17_Chr8g0363841 | 27.575 | 602 | 374 | 15 | 56 | 638 | 22 | 580 | 7.54e-65 | 229 |
Msa0161160 | MtrunA17_Chr1g0164591 | 34.062 | 320 | 196 | 4 | 147 | 464 | 1 | 307 | 8.68e-62 | 211 |
Msa0161160 | MtrunA17_Chr2g0296781 | 29.550 | 467 | 290 | 9 | 55 | 515 | 1 | 434 | 8.71e-59 | 213 |
Msa0161160 | MtrunA17_Chr5g0448761 | 25.619 | 687 | 467 | 16 | 40 | 714 | 47 | 701 | 7.44e-57 | 208 |
Msa0161160 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 1.73e-56 | 202 |
Msa0161160 | MtrunA17_Chr6g0477261 | 33.333 | 321 | 209 | 3 | 196 | 515 | 7 | 323 | 3.66e-54 | 198 |
Msa0161160 | MtrunA17_Chr6g0458391 | 25.850 | 588 | 374 | 14 | 57 | 635 | 231 | 765 | 1.63e-53 | 198 |
Msa0161160 | MtrunA17_Chr2g0287651 | 27.742 | 465 | 304 | 9 | 55 | 515 | 79 | 515 | 3.60e-52 | 195 |
Msa0161160 | MtrunA17_Chr5g0441581 | 25.797 | 659 | 380 | 21 | 39 | 662 | 25 | 609 | 9.62e-52 | 192 |
Msa0161160 | MtrunA17_Chr7g0258861 | 33.974 | 312 | 182 | 6 | 46 | 352 | 2 | 294 | 1.83e-51 | 182 |
Msa0161160 | MtrunA17_Chr1g0198761 | 28.681 | 523 | 331 | 14 | 56 | 564 | 52 | 546 | 5.20e-48 | 182 |
Msa0161160 | MtrunA17_Chr5g0440451 | 24.218 | 735 | 447 | 19 | 1 | 696 | 1 | 664 | 9.49e-47 | 179 |
Msa0161160 | MtrunA17_Chr3g0118611 | 27.253 | 466 | 310 | 8 | 237 | 692 | 111 | 557 | 3.61e-46 | 177 |
Msa0161160 | MtrunA17_Chr1g0196541 | 26.293 | 464 | 309 | 8 | 55 | 515 | 1 | 434 | 1.08e-45 | 175 |
Msa0161160 | MtrunA17_Chr1g0203051 | 25.682 | 440 | 304 | 5 | 101 | 539 | 124 | 541 | 4.26e-45 | 172 |
Msa0161160 | MtrunA17_Chr2g0329031 | 24.118 | 680 | 431 | 18 | 39 | 696 | 2 | 618 | 1.14e-43 | 169 |
Msa0161160 | MtrunA17_Chr2g0291591 | 26.346 | 520 | 318 | 16 | 14 | 515 | 29 | 501 | 1.58e-42 | 163 |
Msa0161160 | MtrunA17_Chr3g0080351 | 24.034 | 699 | 442 | 18 | 15 | 691 | 44 | 675 | 3.37e-42 | 165 |
Msa0161160 | MtrunA17_Chr2g0276841 | 27.092 | 502 | 321 | 16 | 65 | 552 | 84 | 554 | 6.38e-42 | 163 |
Msa0161160 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 204 | 276 | 1 | 73 | 5.12e-41 | 144 |
Msa0161160 | MtrunA17_Chr5g0431001 | 27.354 | 446 | 289 | 12 | 56 | 489 | 66 | 488 | 7.98e-40 | 154 |
Msa0161160 | MtrunA17_Chr2g0290391 | 26.446 | 605 | 373 | 20 | 54 | 633 | 54 | 611 | 9.30e-40 | 156 |
Msa0161160 | MtrunA17_Chr1g0207551 | 25.202 | 496 | 329 | 12 | 22 | 510 | 9 | 469 | 2.02e-38 | 153 |
Msa0161160 | MtrunA17_Chr2g0287061 | 24.068 | 590 | 366 | 16 | 57 | 638 | 189 | 704 | 4.17e-38 | 152 |
Msa0161160 | MtrunA17_Chr5g0448511 | 25.000 | 420 | 282 | 8 | 232 | 638 | 1 | 400 | 3.59e-34 | 138 |
Msa0161160 | MtrunA17_Chr2g0291581 | 24.777 | 448 | 298 | 7 | 54 | 500 | 74 | 483 | 8.93e-34 | 138 |
Msa0161160 | MtrunA17_Chr2g0294841 | 27.111 | 450 | 285 | 14 | 57 | 491 | 51 | 472 | 1.68e-33 | 138 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0161160 | AT4G38180.1 | 25.871 | 603 | 396 | 13 | 50 | 638 | 72 | 637 | 1.91e-57 | 210 |
Msa0161160 | AT2G27110.3 | 25.090 | 558 | 378 | 12 | 229 | 770 | 36 | 569 | 6.56e-44 | 169 |
Msa0161160 | AT2G27110.2 | 25.681 | 514 | 345 | 11 | 229 | 729 | 181 | 670 | 1.19e-43 | 170 |
Msa0161160 | AT2G27110.1 | 25.681 | 514 | 345 | 11 | 229 | 729 | 181 | 670 | 1.19e-43 | 170 |
Msa0161160 | AT3G06250.2 | 24.172 | 604 | 372 | 15 | 39 | 634 | 178 | 703 | 4.14e-41 | 162 |
Msa0161160 | AT3G06250.1 | 24.172 | 604 | 372 | 15 | 39 | 634 | 178 | 703 | 4.14e-41 | 162 |
Msa0161160 | AT3G06250.3 | 24.172 | 604 | 372 | 15 | 39 | 634 | 178 | 703 | 4.14e-41 | 162 |
Msa0161160 | AT4G15090.1 | 26.667 | 375 | 266 | 6 | 139 | 510 | 121 | 489 | 1.81e-38 | 154 |
Msa0161160 | AT4G15090.5 | 26.667 | 375 | 266 | 6 | 139 | 510 | 121 | 489 | 1.81e-38 | 154 |
Msa0161160 | AT4G15090.3 | 26.667 | 375 | 266 | 6 | 139 | 510 | 121 | 489 | 1.81e-38 | 154 |
Msa0161160 | AT4G15090.2 | 26.667 | 375 | 266 | 6 | 139 | 510 | 121 | 489 | 1.81e-38 | 154 |
Msa0161160 | AT4G15090.4 | 26.667 | 375 | 266 | 6 | 139 | 510 | 121 | 489 | 1.81e-38 | 154 |
Msa0161160 | AT1G76320.3 | 25.758 | 462 | 301 | 11 | 57 | 512 | 3 | 428 | 1.59e-37 | 150 |
Msa0161160 | AT1G10240.2 | 25.349 | 501 | 331 | 15 | 65 | 552 | 62 | 532 | 1.65e-37 | 150 |
Msa0161160 | AT1G10240.1 | 25.349 | 501 | 331 | 15 | 65 | 552 | 62 | 532 | 1.65e-37 | 150 |
Msa0161160 | AT1G76320.2 | 25.647 | 464 | 303 | 11 | 55 | 512 | 1 | 428 | 2.33e-37 | 150 |
Msa0161160 | AT1G76320.1 | 25.647 | 464 | 303 | 11 | 55 | 512 | 1 | 428 | 2.42e-37 | 150 |
Msa0161160 | AT1G76320.4 | 25.647 | 464 | 303 | 11 | 55 | 512 | 1 | 428 | 2.42e-37 | 150 |
Msa0161160 | AT5G18960.2 | 23.864 | 616 | 366 | 20 | 37 | 634 | 197 | 727 | 7.22e-37 | 149 |
Msa0161160 | AT5G18960.1 | 23.864 | 616 | 366 | 20 | 37 | 634 | 197 | 727 | 7.22e-37 | 149 |
Msa0161160 | AT3G22170.2 | 21.605 | 648 | 439 | 14 | 48 | 681 | 67 | 659 | 3.88e-36 | 147 |
Msa0161160 | AT3G22170.1 | 21.605 | 648 | 439 | 14 | 48 | 681 | 67 | 659 | 3.88e-36 | 147 |
Msa0161160 | AT4G38170.1 | 22.845 | 464 | 304 | 10 | 251 | 692 | 24 | 455 | 1.11e-35 | 143 |
Msa0161160 | AT5G28530.1 | 25.048 | 519 | 342 | 13 | 56 | 556 | 60 | 549 | 4.95e-35 | 142 |
Msa0161160 | AT5G28530.3 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 1.09e-34 | 141 |
Msa0161160 | AT5G28530.2 | 26.984 | 441 | 278 | 12 | 56 | 478 | 60 | 474 | 1.09e-34 | 141 |
Msa0161160 | AT1G80010.1 | 25.207 | 603 | 385 | 20 | 57 | 635 | 101 | 661 | 1.50e-34 | 141 |
Msa0161160 | AT4G19990.3 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.07e-29 | 126 |
Msa0161160 | AT4G19990.4 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.07e-29 | 126 |
Msa0161160 | AT4G19990.5 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.17e-29 | 126 |
Msa0161160 | AT4G19990.7 | 24.439 | 446 | 288 | 10 | 57 | 499 | 41 | 440 | 1.20e-29 | 126 |
Msa0161160 | AT4G19990.6 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.45e-29 | 126 |
Msa0161160 | AT4G19990.2 | 24.439 | 446 | 288 | 10 | 57 | 499 | 27 | 426 | 1.45e-29 | 126 |
Msa0161160 | AT2G32250.5 | 24.481 | 482 | 290 | 12 | 34 | 511 | 23 | 434 | 1.69e-29 | 125 |
Msa0161160 | AT2G32250.6 | 24.481 | 482 | 290 | 12 | 34 | 511 | 23 | 434 | 1.76e-29 | 125 |
Msa0161160 | AT2G32250.1 | 24.481 | 482 | 290 | 12 | 34 | 511 | 23 | 434 | 1.76e-29 | 125 |
Msa0161160 | AT2G32250.3 | 24.481 | 482 | 290 | 12 | 34 | 511 | 23 | 434 | 1.76e-29 | 125 |
Msa0161160 | AT2G32250.2 | 24.481 | 482 | 290 | 12 | 34 | 511 | 23 | 434 | 1.79e-29 | 125 |
Msa0161160 | AT2G32250.4 | 24.481 | 482 | 290 | 12 | 34 | 511 | 23 | 434 | 1.79e-29 | 125 |
Msa0161160 | AT2G32250.7 | 24.619 | 459 | 274 | 11 | 57 | 511 | 3 | 393 | 3.56e-29 | 124 |
Msa0161160 | AT2G32250.8 | 24.619 | 459 | 274 | 11 | 57 | 511 | 3 | 393 | 3.90e-29 | 124 |
Msa0161160 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 235 | 499 | 106 | 369 | 5.71e-29 | 124 |
Msa0161160 | AT1G52520.1 | 23.937 | 447 | 299 | 10 | 57 | 500 | 91 | 499 | 8.67e-29 | 123 |
Msa0161160 | AT5G28530.4 | 25.203 | 246 | 167 | 7 | 317 | 556 | 252 | 486 | 1.35e-12 | 71.6 |
Msa0161160 | AT5G28530.5 | 30.357 | 168 | 103 | 6 | 317 | 478 | 252 | 411 | 2.91e-12 | 70.5 |
Find 105 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 1_4:-35644848 | Msa0161160:CDS |
AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 1_4:+35644054 | None:intergenic |
TATGGATAAGCTGCCTTTAT+TGG | 0.190113 | 1_4:-35645438 | Msa0161160:intron |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1_4:-35644890 | Msa0161160:CDS |
AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 1_4:+35645311 | None:intergenic |
GAGAACGTCTTATGAAGTTT+TGG | 0.251408 | 1_4:-35646236 | Msa0161160:CDS |
TACTATGATATTCAAGTTGA+TGG | 0.263445 | 1_4:-35646061 | Msa0161160:CDS |
TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 1_4:+35644060 | None:intergenic |
TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 1_4:+35646502 | None:intergenic |
CGATCATGATCTTCAAAACT+TGG | 0.305304 | 1_4:+35644550 | None:intergenic |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1_4:+35646311 | None:intergenic |
GCCTTCGAATGTTGATGTTT+TGG | 0.322848 | 1_4:-35644599 | Msa0161160:CDS |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1_4:-35645995 | Msa0161160:CDS |
GCATACGATTTGCGTAAGTT+TGG | 0.338878 | 1_4:+35645034 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1_4:+35645945 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 1_4:+35645425 | None:intergenic |
TTTGGTCTTTCTTTATACTT+TGG | 0.368174 | 1_4:+35644078 | None:intergenic |
CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 1_4:-35644216 | Msa0161160:CDS |
TTTGTTTCTTCCGATTGATA+AGG | 0.384635 | 1_4:+35643992 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 1_4:-35645938 | Msa0161160:intron |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1_4:-35645946 | Msa0161160:CDS |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1_4:-35644716 | Msa0161160:CDS |
GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 1_4:-35645065 | Msa0161160:CDS |
TCTTTATACTTTGGTGCGGT+GGG | 0.427324 | 1_4:+35644087 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 1_4:-35646550 | Msa0161160:CDS |
AAAACACCTGGAAAACTATT+CGG | 0.428349 | 1_4:+35645252 | None:intergenic |
GCTGTTGGTGAAACATCTGC+TGG | 0.428855 | 1_4:-35644117 | Msa0161160:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1_4:-35646298 | Msa0161160:CDS |
TTGATATCGTTGTGCTTGAC+TGG | 0.433430 | 1_4:+35644308 | None:intergenic |
TTTAAGTCTGAAAACTGAAA+AGG | 0.436258 | 1_4:+35646184 | None:intergenic |
GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 1_4:-35644183 | Msa0161160:CDS |
TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 1_4:+35646713 | None:intergenic |
TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 1_4:+35646712 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1_4:-35646433 | Msa0161160:CDS |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1_4:-35645016 | Msa0161160:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 1_4:-35646381 | Msa0161160:CDS |
CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 1_4:-35644750 | Msa0161160:CDS |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 1_4:-35646268 | Msa0161160:CDS |
GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 1_4:+35644796 | None:intergenic |
TTCTTTATACTTTGGTGCGG+TGG | 0.464201 | 1_4:+35644086 | None:intergenic |
ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 1_4:+35646490 | None:intergenic |
GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 1_4:-35646513 | Msa0161160:CDS |
CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 1_4:+35644399 | None:intergenic |
GGCAGAAATTCCTTATCAAT+CGG | 0.471938 | 1_4:-35644002 | Msa0161160:CDS |
ATCATGATCGATTTGATGAA+AGG | 0.476999 | 1_4:-35644537 | Msa0161160:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1_4:-35645017 | Msa0161160:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1_4:+35644714 | None:intergenic |
CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 1_4:-35644171 | Msa0161160:CDS |
GATCATGATCTTCAAAACTT+GGG | 0.487945 | 1_4:+35644551 | None:intergenic |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 1_4:-35644700 | Msa0161160:CDS |
GTCTTCAGTGCCAACATTGA+CGG | 0.491796 | 1_4:+35644332 | None:intergenic |
TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 1_4:+35644148 | None:intergenic |
CTGTTGGTGAAACATCTGCT+GGG | 0.493682 | 1_4:-35644116 | Msa0161160:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1_4:-35644876 | Msa0161160:CDS |
CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 1_4:-35646714 | Msa0161160:CDS |
TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 1_4:+35644754 | None:intergenic |
TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 1_4:+35646439 | None:intergenic |
AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 1_4:-35646416 | Msa0161160:CDS |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 1_4:-35644857 | Msa0161160:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 1_4:-35646584 | Msa0161160:CDS |
CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 1_4:+35646328 | None:intergenic |
GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 1_4:+35644755 | None:intergenic |
GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 1_4:+35646753 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 1_4:-35646539 | Msa0161160:CDS |
TAAGATATATAGATGGGATG+TGG | 0.528498 | 1_4:-35646374 | Msa0161160:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1_4:+35644719 | None:intergenic |
TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 1_4:-35645226 | Msa0161160:CDS |
GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 1_4:+35646340 | None:intergenic |
CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 1_4:+35646714 | None:intergenic |
TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 1_4:+35646752 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 1_4:-35644699 | Msa0161160:CDS |
AATCGAACAAGTGAGTGGTC+TGG | 0.543268 | 1_4:+35644913 | None:intergenic |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 1_4:-35646538 | Msa0161160:CDS |
AACACAATAACGCACTAGCC+TGG | 0.552106 | 1_4:+35645280 | None:intergenic |
CTGAAATCGACCGTCAATGT+TGG | 0.564487 | 1_4:-35644342 | Msa0161160:CDS |
GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 1_4:-35645062 | Msa0161160:CDS |
TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 1_4:-35644132 | Msa0161160:CDS |
GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 1_4:+35644795 | None:intergenic |
AGTTCTTAGAAGACAATACC+TGG | 0.571336 | 1_4:-35644417 | Msa0161160:intron |
TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 1_4:+35644147 | None:intergenic |
ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 1_4:+35644552 | None:intergenic |
ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 1_4:-35644798 | Msa0161160:CDS |
CTTACGCAAATCGTATGCAT+TGG | 0.597846 | 1_4:-35645029 | Msa0161160:CDS |
TATGATGATGCTGATAATGA+CGG | 0.599988 | 1_4:-35644622 | Msa0161160:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 1_4:-35646380 | Msa0161160:CDS |
TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 1_4:-35646793 | Msa0161160:CDS |
TCCAAAACATCAACATTCGA+AGG | 0.607058 | 1_4:+35644598 | None:intergenic |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1_4:-35644713 | Msa0161160:CDS |
GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 1_4:-35646491 | Msa0161160:CDS |
ATGATGATGCTGATAATGAC+GGG | 0.620534 | 1_4:-35644621 | Msa0161160:CDS |
ACATCAACTTCATCTGAGAG+TGG | 0.622661 | 1_4:-35646838 | Msa0161160:CDS |
TTCACAAACTCAATAACCTG+TGG | 0.626760 | 1_4:+35646475 | None:intergenic |
TGAAGCTTTATCAGTGATTG+TGG | 0.633753 | 1_4:-35643959 | Msa0161160:CDS |
TGTTGGTGAAACATCTGCTG+GGG | 0.639082 | 1_4:-35644115 | Msa0161160:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1_4:-35644875 | Msa0161160:CDS |
TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 1_4:+35645300 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 1_4:+35644357 | None:intergenic |
GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 1_4:+35645056 | None:intergenic |
TAAAGAATCGAACAAGTGAG+TGG | 0.654901 | 1_4:+35644908 | None:intergenic |
AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 1_4:+35644756 | None:intergenic |
TCTTTCTTTATACTTTGGTG+CGG | 0.672435 | 1_4:+35644083 | None:intergenic |
AGGGGTGCACTTGTTTACAA+CGG | 0.677946 | 1_4:+35644774 | None:intergenic |
TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 1_4:+35646754 | None:intergenic |
AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 1_4:+35645060 | None:intergenic |
ACAGACGATTTATACAGACC+AGG | 0.720235 | 1_4:-35645298 | Msa0161160:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGATGAGTTAAATAATT+TGG | - | chr1_4:35645638-35645657 | Msa0161160:intron | 15.0% |
!!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr1_4:35644128-35644147 | Msa0161160:CDS | 20.0% |
!!! | ATAACACTGAATTTTCTATT+AGG | - | chr1_4:35644162-35644181 | Msa0161160:CDS | 20.0% |
!! | ATGTGTATAAGATATATAGA+TGG | - | chr1_4:35644414-35644433 | Msa0161160:intron | 20.0% |
!! | TGTGTATAAGATATATAGAT+GGG | - | chr1_4:35644415-35644434 | Msa0161160:intron | 20.0% |
!! | TGAATATCATAGTAAAAAGA+TGG | + | chr1_4:35644728-35644747 | None:intergenic | 20.0% |
!!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr1_4:35644918-35644937 | Msa0161160:CDS | 20.0% |
!! | ACATACTTATTAGAATACTT+AGG | - | chr1_4:35645148-35645167 | Msa0161160:CDS | 20.0% |
!!! | TTCTTATAATTTGTGATTAC+AGG | - | chr1_4:35645211-35645230 | Msa0161160:CDS | 20.0% |
!!! | TATTGTATTTTGTTCTGATA+TGG | - | chr1_4:35645339-35645358 | Msa0161160:CDS | 20.0% |
!!! | AATCAGATTTTGACTATAAT+TGG | - | chr1_4:35645679-35645698 | Msa0161160:intron | 20.0% |
!!! | ATCAGATTTTGACTATAATT+GGG | - | chr1_4:35645680-35645699 | Msa0161160:intron | 20.0% |
!!! | ATGATGATAAATTGTTTTGA+TGG | - | chr1_4:35645708-35645727 | Msa0161160:intron | 20.0% |
! | ACAAAACAAGAAATCTGATA+AGG | - | chr1_4:35644211-35644230 | Msa0161160:CDS | 25.0% |
! | TTTAAGTCTGAAAACTGAAA+AGG | + | chr1_4:35644614-35644633 | None:intergenic | 25.0% |
!!! | TACTATGATATTCAAGTTGA+TGG | - | chr1_4:35644734-35644753 | Msa0161160:CDS | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | - | chr1_4:35644762-35644781 | Msa0161160:CDS | 25.0% |
! | CAACTAGATTATTCTCTATT+CGG | - | chr1_4:35644800-35644819 | Msa0161160:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | - | chr1_4:35644849-35644868 | Msa0161160:CDS | 25.0% |
! | AGTAAAAAACACTAACCTAA+TGG | + | chr1_4:35644875-35644894 | None:intergenic | 25.0% |
! | TCTTACTTATTTGAACTACA+CGG | - | chr1_4:35644994-35645013 | Msa0161160:CDS | 25.0% |
!! | TTTAACCATGTTGTTTGTTT+AGG | - | chr1_4:35645018-35645037 | Msa0161160:CDS | 25.0% |
!! | TTAACCATGTTGTTTGTTTA+GGG | - | chr1_4:35645019-35645038 | Msa0161160:CDS | 25.0% |
! | CAAACTTAAATGATGTTGAT+TGG | - | chr1_4:35645072-35645091 | Msa0161160:CDS | 25.0% |
!!! | ATTTATATTTTGAACTGCCT+AGG | - | chr1_4:35645096-35645115 | Msa0161160:CDS | 25.0% |
! | ATGATTGTCAAAACCAATAA+AGG | + | chr1_4:35645373-35645392 | None:intergenic | 25.0% |
!!! | TGATAAATTGTTTTGATGGA+AGG | - | chr1_4:35645712-35645731 | Msa0161160:intron | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | - | chr1_4:35645905-35645924 | Msa0161160:intron | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | + | chr1_4:35646079-35646098 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | - | chr1_4:35646079-35646098 | Msa0161160:CDS | 25.0% |
!! | AACTTTGAAAAACTTCTCAA+AGG | + | chr1_4:35646126-35646145 | None:intergenic | 25.0% |
!! | CAAAGTTTTCACAATTGATA+AGG | - | chr1_4:35646139-35646158 | Msa0161160:CDS | 25.0% |
!! | AGAAAAATTTTAGATGACTC+TGG | + | chr1_4:35646561-35646580 | None:intergenic | 25.0% |
!!! | TCATCTAAAATTTTTCTCGA+CGG | - | chr1_4:35646564-35646583 | Msa0161160:CDS | 25.0% |
!! | TTTGGTCTTTCTTTATACTT+TGG | + | chr1_4:35646720-35646739 | None:intergenic | 25.0% |
!! | TTCTTTGACTTAATTGGATT+TGG | + | chr1_4:35646738-35646757 | None:intergenic | 25.0% |
! | ATTATGAAAAAGCTAGAGAA+AGG | - | chr1_4:35646772-35646791 | Msa0161160:CDS | 25.0% |
TCCATGATTCTTTATTGCTA+GGG | + | chr1_4:35644085-35644104 | None:intergenic | 30.0% | |
TTCCATGATTCTTTATTGCT+AGG | + | chr1_4:35644086-35644105 | None:intergenic | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | - | chr1_4:35644245-35644264 | Msa0161160:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | - | chr1_4:35644256-35644275 | Msa0161160:CDS | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | - | chr1_4:35644257-35644276 | Msa0161160:CDS | 30.0% | |
GTTTACTTAATCCTAACAAC+AGG | - | chr1_4:35644282-35644301 | Msa0161160:CDS | 30.0% | |
TAAGATATATAGATGGGATG+TGG | - | chr1_4:35644421-35644440 | Msa0161160:intron | 30.0% | |
TTACTTCTCGAAATGATCTA+AGG | + | chr1_4:35644487-35644506 | None:intergenic | 30.0% | |
!! | GCTCTTATAAATTCTAAAGC+TGG | - | chr1_4:35644527-35644546 | Msa0161160:intron | 30.0% |
! | AGAACGTCTTATGAAGTTTT+GGG | - | chr1_4:35644560-35644579 | Msa0161160:CDS | 30.0% |
GCCGATATTTATTGTTTGTT+CGG | + | chr1_4:35644853-35644872 | None:intergenic | 30.0% | |
AACAATAAATATCGGCCATT+AGG | - | chr1_4:35644857-35644876 | Msa0161160:CDS | 30.0% | |
!!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr1_4:35644881-35644900 | Msa0161160:CDS | 30.0% |
CTTACTTATTTGAACTACAC+GGG | - | chr1_4:35644995-35645014 | Msa0161160:CDS | 30.0% | |
AAATCCCTAAACAAACAACA+TGG | + | chr1_4:35645026-35645045 | None:intergenic | 30.0% | |
TAAGTTTGTCTCAAACCAAA+TGG | + | chr1_4:35645060-35645079 | None:intergenic | 30.0% | |
AAAACACCTGGAAAACTATT+CGG | + | chr1_4:35645546-35645565 | None:intergenic | 30.0% | |
GAGAATGCAAAGAAAAATCT+TGG | - | chr1_4:35645594-35645613 | Msa0161160:intron | 30.0% | |
! | TATTTCAATGCTTTTCTTCG+TGG | - | chr1_4:35645849-35645868 | Msa0161160:intron | 30.0% |
AATAAATGCAAAGCAAGAAG+GGG | + | chr1_4:35646042-35646061 | None:intergenic | 30.0% | |
GAATAAATGCAAAGCAAGAA+GGG | + | chr1_4:35646043-35646062 | None:intergenic | 30.0% | |
TGAATAAATGCAAAGCAAGA+AGG | + | chr1_4:35646044-35646063 | None:intergenic | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | + | chr1_4:35646084-35646103 | None:intergenic | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | - | chr1_4:35646082-35646101 | Msa0161160:CDS | 30.0% | |
! | TATGATGATGCTGATAATGA+CGG | - | chr1_4:35646173-35646192 | Msa0161160:CDS | 30.0% |
ATCATGATCTTCAAAACTTG+GGG | + | chr1_4:35646246-35646265 | None:intergenic | 30.0% | |
GATCATGATCTTCAAAACTT+GGG | + | chr1_4:35646247-35646266 | None:intergenic | 30.0% | |
!! | ATCATGATCGATTTGATGAA+AGG | - | chr1_4:35646258-35646277 | Msa0161160:CDS | 30.0% |
!!! | GACAATATGTTTTAAAGCGT+TGG | - | chr1_4:35646400-35646419 | Msa0161160:CDS | 30.0% |
TCTTTCTTTATACTTTGGTG+CGG | + | chr1_4:35646715-35646734 | None:intergenic | 30.0% | |
! | TTTGTTTCTTCCGATTGATA+AGG | + | chr1_4:35646806-35646825 | None:intergenic | 30.0% |
CCATGATTCTTTATTGCTAG+GGG | + | chr1_4:35644084-35644103 | None:intergenic | 35.0% | |
TTCACAAACTCAATAACCTG+TGG | + | chr1_4:35644323-35644342 | None:intergenic | 35.0% | |
GAAAGTGAAAGAAAAACCTG+AGG | - | chr1_4:35644340-35644359 | Msa0161160:CDS | 35.0% | |
TGAAAGAAAAACCTGAGGAA+AGG | - | chr1_4:35644345-35644364 | Msa0161160:CDS | 35.0% | |
GAAAGAAAAACCTGAGGAAA+GGG | - | chr1_4:35644346-35644365 | Msa0161160:CDS | 35.0% | |
! | AGCTGGAATATATTTGAAGC+TGG | - | chr1_4:35644379-35644398 | Msa0161160:CDS | 35.0% |
! | GAATGCTCTGGTTTATGTAA+TGG | + | chr1_4:35644458-35644477 | None:intergenic | 35.0% |
CGAGAAGTAAATGAAGTTCA+AGG | - | chr1_4:35644497-35644516 | Msa0161160:intron | 35.0% | |
! | GAGAACGTCTTATGAAGTTT+TGG | - | chr1_4:35644559-35644578 | Msa0161160:CDS | 35.0% |
!!! | TCTTATGAAGTTTTGGGTCA+GGG | - | chr1_4:35644566-35644585 | Msa0161160:CDS | 35.0% |
GACAATTCGTCAAAAAGAGA+TGG | - | chr1_4:35644646-35644665 | Msa0161160:CDS | 35.0% | |
AATTCGTCAAAAAGAGATGG+TGG | - | chr1_4:35644649-35644668 | Msa0161160:CDS | 35.0% | |
GTAAAAAGATGGTTTCGAGA+GGG | + | chr1_4:35644717-35644736 | None:intergenic | 35.0% | |
AGTAAAAAGATGGTTTCGAG+AGG | + | chr1_4:35644718-35644737 | None:intergenic | 35.0% | |
!!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr1_4:35644770-35644789 | Msa0161160:CDS | 35.0% |
TAAGACCTATAGTCAATCCT+AGG | + | chr1_4:35644979-35644998 | None:intergenic | 35.0% | |
! | ATTTTCTCGCTTCTACCATT+TGG | - | chr1_4:35645042-35645061 | Msa0161160:CDS | 35.0% |
! | ATTTAGTTTACGCATTGCTG+AGG | - | chr1_4:35645182-35645201 | Msa0161160:CDS | 35.0% |
TATGGATAAGCTGCCTTTAT+TGG | - | chr1_4:35645357-35645376 | Msa0161160:CDS | 35.0% | |
!!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr1_4:35645390-35645409 | Msa0161160:CDS | 35.0% |
AATCGTCTGTGGTTTCTTAT+TGG | + | chr1_4:35645487-35645506 | None:intergenic | 35.0% | |
! | TCAATTCCGAATAGTTTTCC+AGG | - | chr1_4:35645537-35645556 | Msa0161160:intron | 35.0% |
! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr1_4:35645549-35645568 | Msa0161160:intron | 35.0% |
! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr1_4:35645550-35645569 | Msa0161160:intron | 35.0% |
!!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr1_4:35645562-35645581 | Msa0161160:intron | 35.0% |
TAAAGAATCGAACAAGTGAG+TGG | + | chr1_4:35645890-35645909 | None:intergenic | 35.0% | |
ACATTATGGTTCAGAGAATG+AGG | - | chr1_4:35645919-35645938 | Msa0161160:intron | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | - | chr1_4:35645920-35645939 | Msa0161160:intron | 35.0% | |
CTTGCTTTGCATTTATTCAC+AGG | - | chr1_4:35646045-35646064 | Msa0161160:CDS | 35.0% | |
! | ATGATGATGCTGATAATGAC+GGG | - | chr1_4:35646174-35646193 | Msa0161160:CDS | 35.0% |
TCCAAAACATCAACATTCGA+AGG | + | chr1_4:35646200-35646219 | None:intergenic | 35.0% | |
CGATCATGATCTTCAAAACT+TGG | + | chr1_4:35646248-35646267 | None:intergenic | 35.0% | |
ATGTCGTATGTTTGAGAACA+GGG | - | chr1_4:35646322-35646341 | Msa0161160:CDS | 35.0% | |
!!! | TCGACATGTTTTGAAGATCT+TGG | - | chr1_4:35646355-35646374 | Msa0161160:CDS | 35.0% |
AGTTCTTAGAAGACAATACC+TGG | - | chr1_4:35646378-35646397 | Msa0161160:CDS | 35.0% | |
!! | CGCTTTAAAACATATTGTCC+AGG | + | chr1_4:35646399-35646418 | None:intergenic | 35.0% |
TGTTCTTGAAGCTGGAAAAA+AGG | - | chr1_4:35646587-35646606 | Msa0161160:CDS | 35.0% | |
!! | CTTTCTAAAGGTATTCGTAC+AGG | - | chr1_4:35646624-35646643 | Msa0161160:CDS | 35.0% |
!!! | GCTACTTTTGAAGACTTAGA+TGG | + | chr1_4:35646657-35646676 | None:intergenic | 35.0% |
! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr1_4:35646744-35646763 | None:intergenic | 35.0% |
GGCAGAAATTCCTTATCAAT+CGG | - | chr1_4:35646793-35646812 | Msa0161160:CDS | 35.0% | |
! | TGAAGCTTTATCAGTGATTG+TGG | - | chr1_4:35646836-35646855 | Msa0161160:CDS | 35.0% |
ACATCAACTTCATCTGAGAG+TGG | - | chr1_4:35643957-35643976 | Msa0161160:CDS | 40.0% | |
TCAGCATGAATCATTGCTAG+GGG | + | chr1_4:35644044-35644063 | None:intergenic | 40.0% | |
GTCAGCATGAATCATTGCTA+GGG | + | chr1_4:35644045-35644064 | None:intergenic | 40.0% | |
TGTCAGCATGAATCATTGCT+AGG | + | chr1_4:35644046-35644065 | None:intergenic | 40.0% | |
CCCCTAGCAATAAAGAATCA+TGG | - | chr1_4:35644081-35644100 | Msa0161160:CDS | 40.0% | |
!!! | GTCTTATGAAGTTTTGGGTC+AGG | - | chr1_4:35644565-35644584 | Msa0161160:CDS | 40.0% |
! | CAGTACATTTTGAACTGCCT+AGG | - | chr1_4:35644959-35644978 | Msa0161160:CDS | 40.0% |
AACTGCCTAGGATTGACTAT+AGG | - | chr1_4:35644971-35644990 | Msa0161160:CDS | 40.0% | |
TCACACAAGACAAAATGCCT+AGG | + | chr1_4:35645116-35645135 | None:intergenic | 40.0% | |
!!! | AGACAGCAGCTACTTTTGAT+TGG | - | chr1_4:35645433-35645452 | Msa0161160:intron | 40.0% |
TGGTCTGTATAAATCGTCTG+TGG | + | chr1_4:35645498-35645517 | None:intergenic | 40.0% | |
ACAGACGATTTATACAGACC+AGG | - | chr1_4:35645497-35645516 | Msa0161160:intron | 40.0% | |
GCATACGATTTGCGTAAGTT+TGG | + | chr1_4:35645764-35645783 | None:intergenic | 40.0% | |
CTTACGCAAATCGTATGCAT+TGG | - | chr1_4:35645766-35645785 | Msa0161160:intron | 40.0% | |
!! | TATGCATTGGTCTTCAGCTT+GGG | - | chr1_4:35645779-35645798 | Msa0161160:intron | 40.0% |
! | GTCAAGTCACATTTTACAGC+TGG | - | chr1_4:35645801-35645820 | Msa0161160:intron | 40.0% |
! | TCATGCTGAGTTGGACTTTA+AGG | - | chr1_4:35645947-35645966 | Msa0161160:CDS | 40.0% |
TATGAGGAGGACACAACAAA+AGG | - | chr1_4:35646095-35646114 | Msa0161160:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | - | chr1_4:35646096-35646115 | Msa0161160:CDS | 40.0% | |
! | GCCTTCGAATGTTGATGTTT+TGG | - | chr1_4:35646196-35646215 | Msa0161160:CDS | 40.0% |
CATGTCGTATGTTTGAGAAC+AGG | - | chr1_4:35646321-35646340 | Msa0161160:CDS | 40.0% | |
TGTCGTATGTTTGAGAACAG+GGG | - | chr1_4:35646323-35646342 | Msa0161160:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | + | chr1_4:35646441-35646460 | None:intergenic | 40.0% | |
TTGATATCGTTGTGCTTGAC+TGG | + | chr1_4:35646490-35646509 | None:intergenic | 40.0% | |
GAGGAGTTGCTTCTTTCTAA+AGG | - | chr1_4:35646612-35646631 | Msa0161160:CDS | 40.0% | |
TTTGAAGACTTAGATGGCGT+CGG | + | chr1_4:35646651-35646670 | None:intergenic | 40.0% | |
TCTTCAAAAGTAGCTGCTGT+TGG | - | chr1_4:35646663-35646682 | Msa0161160:CDS | 40.0% | |
! | TCTTTATACTTTGGTGCGGT+GGG | + | chr1_4:35646711-35646730 | None:intergenic | 40.0% |
! | TTCTTTATACTTTGGTGCGG+TGG | + | chr1_4:35646712-35646731 | None:intergenic | 40.0% |
!! | TCACTGATTCATGCTGAGAG+TGG | - | chr1_4:35644002-35644021 | Msa0161160:CDS | 45.0% |
! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr1_4:35644296-35644315 | None:intergenic | 45.0% |
GAAAAACCTGAGGAAAGGGT+TGG | - | chr1_4:35644350-35644369 | Msa0161160:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+AGG | + | chr1_4:35644359-35644378 | None:intergenic | 45.0% | |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr1_4:35644362-35644381 | Msa0161160:CDS | 45.0% |
CTAAGGTAACACGAATGCTC+TGG | + | chr1_4:35644470-35644489 | None:intergenic | 45.0% | |
! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr1_4:35644653-35644672 | Msa0161160:CDS | 45.0% |
AACACAATAACGCACTAGCC+TGG | + | chr1_4:35645518-35645537 | None:intergenic | 45.0% | |
CAAAGCCCATGAAAAACACC+TGG | + | chr1_4:35645558-35645577 | None:intergenic | 45.0% | |
!! | GTATGCATTGGTCTTCAGCT+TGG | - | chr1_4:35645778-35645797 | Msa0161160:intron | 45.0% |
AATCGAACAAGTGAGTGGTC+TGG | + | chr1_4:35645885-35645904 | None:intergenic | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | - | chr1_4:35645938-35645957 | Msa0161160:intron | 45.0% | |
! | AGGGGTGCACTTGTTTACAA+CGG | + | chr1_4:35646024-35646043 | None:intergenic | 45.0% |
CTGAAATCGACCGTCAATGT+TGG | - | chr1_4:35646453-35646472 | Msa0161160:CDS | 45.0% | |
GTCTTCAGTGCCAACATTGA+CGG | + | chr1_4:35646466-35646485 | None:intergenic | 45.0% | |
TGAAGCTGGAAAAAAGGCAG+AGG | - | chr1_4:35646593-35646612 | Msa0161160:CDS | 45.0% | |
TTGAAGACTTAGATGGCGTC+GGG | + | chr1_4:35646650-35646669 | None:intergenic | 45.0% | |
! | CTGTTGGTGAAACATCTGCT+GGG | - | chr1_4:35646679-35646698 | Msa0161160:CDS | 45.0% |
! | TGTTGGTGAAACATCTGCTG+GGG | - | chr1_4:35646680-35646699 | Msa0161160:CDS | 45.0% |
! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr1_4:35644308-35644327 | None:intergenic | 50.0% |
!!! | GAAGTTTTGGGTCAGGGAGT+TGG | - | chr1_4:35644572-35644591 | Msa0161160:CDS | 50.0% |
!! | TGGGCTTTGTTCATGGCACA+TGG | - | chr1_4:35645569-35645588 | Msa0161160:intron | 50.0% |
GAAGGCCTACCTCAGACTTT+AGG | - | chr1_4:35645730-35645749 | Msa0161160:intron | 50.0% | |
! | AGCCACCTAAAGTCTGAGGT+AGG | + | chr1_4:35645738-35645757 | None:intergenic | 50.0% |
GACAAGCCACCTAAAGTCTG+AGG | + | chr1_4:35645742-35645761 | None:intergenic | 50.0% | |
ATCCCAACAGTCAGCTGATG+CGG | - | chr1_4:35645997-35646016 | Msa0161160:CDS | 50.0% | |
! | GCTGTTGGTGAAACATCTGC+TGG | - | chr1_4:35646678-35646697 | Msa0161160:CDS | 50.0% |
GCCAACAACAGACAGTCCAC+AGG | - | chr1_4:35644304-35644323 | Msa0161160:CDS | 55.0% | |
!! | GTTTTGGGTCAGGGAGTTGG+AGG | - | chr1_4:35644575-35644594 | Msa0161160:CDS | 55.0% |
GGCCTACCTCAGACTTTAGG+TGG | - | chr1_4:35645733-35645752 | Msa0161160:intron | 55.0% | |
GACCGCATCAGCTGACTGTT+GGG | + | chr1_4:35646002-35646021 | None:intergenic | 55.0% | |
CTCGACGGTGTTCTTGAAGC+TGG | - | chr1_4:35646579-35646598 | Msa0161160:CDS | 55.0% | |
GGACCGCATCAGCTGACTGT+TGG | + | chr1_4:35646003-35646022 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 35643948 | 35646869 | 35643948 | ID=Msa0161160;Name=Msa0161160 |
chr1_4 | mRNA | 35643948 | 35646869 | 35643948 | ID=Msa0161160-mRNA-1;Parent=Msa0161160;Name=Msa0161160-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|778 |
chr1_4 | exon | 35645939 | 35646869 | 35645939 | ID=Msa0161160-mRNA-1:exon:10679;Parent=Msa0161160-mRNA-1 |
chr1_4 | exon | 35644528 | 35645450 | 35644528 | ID=Msa0161160-mRNA-1:exon:10678;Parent=Msa0161160-mRNA-1 |
chr1_4 | exon | 35643948 | 35644430 | 35643948 | ID=Msa0161160-mRNA-1:exon:10677;Parent=Msa0161160-mRNA-1 |
chr1_4 | CDS | 35645939 | 35646869 | 35645939 | ID=Msa0161160-mRNA-1:cds;Parent=Msa0161160-mRNA-1 |
chr1_4 | CDS | 35644528 | 35645450 | 35644528 | ID=Msa0161160-mRNA-1:cds;Parent=Msa0161160-mRNA-1 |
chr1_4 | CDS | 35643948 | 35644430 | 35643948 | ID=Msa0161160-mRNA-1:cds;Parent=Msa0161160-mRNA-1 |
Gene Sequence |
Protein sequence |