Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161300 | KEH41673.1 | 85.886 | 333 | 35 | 3 | 1 | 331 | 1 | 323 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161300 | A0A072VJQ5 | 85.886 | 333 | 35 | 3 | 1 | 331 | 1 | 323 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0161300 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161300 | MtrunA17_Chr1g0174911 | 85.886 | 333 | 35 | 3 | 1 | 331 | 1 | 323 | 0.0 | 559 |
| Msa0161300 | MtrunA17_Chr1g0168571 | 57.265 | 351 | 102 | 11 | 1 | 330 | 1 | 324 | 6.16e-116 | 338 |
| Msa0161300 | MtrunA17_Chr7g0274971 | 60.577 | 208 | 49 | 6 | 1 | 183 | 1 | 200 | 6.72e-77 | 234 |
| Msa0161300 | MtrunA17_Chr7g0214071 | 32.143 | 168 | 91 | 9 | 11 | 170 | 19 | 171 | 4.29e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGAATCCTTGGGATATT+TGG | 0.040443 | 1_4:-36167206 | Msa0161300:CDS |
| CCACCATTTGATTCATTTCT+TGG | 0.073758 | 1_4:+36166454 | None:intergenic |
| TAACTCTTCATGAAACTTAT+TGG | 0.168233 | 1_4:+36165325 | None:intergenic |
| GTTTCATGAAGAGTTATTAT+TGG | 0.203680 | 1_4:-36165318 | Msa0161300:CDS |
| TTCAAGAATGGTGATGTAAT+TGG | 0.213249 | 1_4:+36167248 | None:intergenic |
| AAATATCCCAAGGATTCTTT+AGG | 0.262491 | 1_4:+36167208 | None:intergenic |
| TCATTGTCAGGTTGAACTAT+TGG | 0.266404 | 1_4:+36165515 | None:intergenic |
| AGTGGTAGATTTCTTCTCTA+AGG | 0.296212 | 1_4:+36167122 | None:intergenic |
| AACTCTTCATGAAACTTATT+GGG | 0.303213 | 1_4:+36165326 | None:intergenic |
| CAGGTTGAACTATTGGATTT+TGG | 0.311938 | 1_4:+36165522 | None:intergenic |
| TCAAAAGTAGTTCGTTCTAT+TGG | 0.321604 | 1_4:-36167096 | Msa0161300:CDS |
| AAAGAATCCTTGGGATATTT+GGG | 0.338135 | 1_4:-36167205 | Msa0161300:CDS |
| TGGGATATTTGGGAAGAGTT+TGG | 0.341365 | 1_4:-36167195 | Msa0161300:CDS |
| ATTCTTGAATACGATTTGTT+TGG | 0.353129 | 1_4:-36167234 | Msa0161300:CDS |
| TCAAGAGAGACAACTATTCT+TGG | 0.353652 | 1_4:-36166358 | Msa0161300:CDS |
| TAATACAAAGTCTCATTATA+AGG | 0.356324 | 1_4:-36166410 | Msa0161300:CDS |
| GTAGTTCGTTCTATTGGAAT+TGG | 0.365191 | 1_4:-36167090 | Msa0161300:CDS |
| ATCTTTGATAAGAAATCCTT+TGG | 0.365896 | 1_4:-36166920 | Msa0161300:intron |
| TCTCAATTCTTCTTCAAGTA+AGG | 0.366602 | 1_4:-36167343 | Msa0161300:CDS |
| AATTGGGAAGAGATTTGTTA+TGG | 0.367059 | 1_4:+36167265 | None:intergenic |
| AATATCCCAAGGATTCTTTA+GGG | 0.371252 | 1_4:+36167209 | None:intergenic |
| TCAAGAATGGTGATGTAATT+GGG | 0.404508 | 1_4:+36167249 | None:intergenic |
| TGGACACAGTAGCACAAATA+TGG | 0.406836 | 1_4:-36166434 | Msa0161300:CDS |
| TTAAGGTAGTGAAGAAATAT+AGG | 0.411633 | 1_4:+36167145 | None:intergenic |
| GAAAGAAAGACCATTGTTCC+TGG | 0.417462 | 1_4:-36166756 | Msa0161300:CDS |
| TCATCATCATCTTCATTGTC+AGG | 0.417702 | 1_4:+36165503 | None:intergenic |
| TTGGTACCCTAAAGAATCCT+TGG | 0.424102 | 1_4:-36167215 | Msa0161300:CDS |
| AATCAAGTAACTTACAGATA+TGG | 0.426262 | 1_4:+36166719 | None:intergenic |
| AGATTTCTTCTCTAAGGTTA+AGG | 0.432842 | 1_4:+36167128 | None:intergenic |
| TCTGCATAGAACATAATTGT+TGG | 0.465415 | 1_4:+36166809 | None:intergenic |
| GAACCAAGAAATGAATCAAA+TGG | 0.482883 | 1_4:-36166457 | Msa0161300:CDS |
| TGGTACCCTAAAGAATCCTT+GGG | 0.489046 | 1_4:-36167214 | Msa0161300:CDS |
| ATGCTTGTTAGAAGAGGAAG+AGG | 0.495031 | 1_4:-36165360 | Msa0161300:CDS |
| TGTAGGACTTACAAATTCGT+TGG | 0.498419 | 1_4:+36166324 | None:intergenic |
| GTTCTATTGGAATTGGTGCA+TGG | 0.508402 | 1_4:-36167083 | Msa0161300:CDS |
| GAGCTGATAGAGATTAATGA+AGG | 0.519458 | 1_4:-36165383 | Msa0161300:CDS |
| AAACAAATCGTATTCAAGAA+TGG | 0.519788 | 1_4:+36167236 | None:intergenic |
| TGAAGGATGCTTGTTAGAAG+AGG | 0.520085 | 1_4:-36165366 | Msa0161300:CDS |
| GACAATGAAGATGATGATGA+TGG | 0.525335 | 1_4:-36165500 | Msa0161300:CDS |
| TTCTTATCAAAGATTTGTCA+AGG | 0.536486 | 1_4:+36166929 | None:intergenic |
| ATGGTGGTTTCTGCACGTCC+AGG | 0.545124 | 1_4:+36166738 | None:intergenic |
| TTCTATTGGAATTGGTGCAT+GGG | 0.546914 | 1_4:-36167082 | Msa0161300:CDS |
| GCAAGATCCATGCACCATCA+TGG | 0.566204 | 1_4:+36166962 | None:intergenic |
| ATGATGATGCTGGTATGTCT+TGG | 0.577942 | 1_4:-36165424 | Msa0161300:CDS |
| AACTCTTCCCAAATATCCCA+AGG | 0.585203 | 1_4:+36167198 | None:intergenic |
| CAAGTAACTTACAGATATGG+TGG | 0.592493 | 1_4:+36166722 | None:intergenic |
| TTCTGCACGTCCAGGAACAA+TGG | 0.595867 | 1_4:+36166746 | None:intergenic |
| ACAATGAAGATGATGATGAT+GGG | 0.598315 | 1_4:-36165499 | Msa0161300:CDS |
| ATTGGAATTGGTGCATGGGA+AGG | 0.630255 | 1_4:-36167078 | Msa0161300:CDS |
| GCACTTACCATGATGGTGCA+TGG | 0.633065 | 1_4:-36166969 | Msa0161300:CDS |
| GACGAAGAAGATGATGATGC+TGG | 0.640357 | 1_4:-36165434 | Msa0161300:CDS |
| CCAAGAAATGAATCAAATGG+TGG | 0.641398 | 1_4:-36166454 | Msa0161300:CDS |
| AGAAAGAATATTGATGCACA+AGG | 0.643759 | 1_4:-36166783 | Msa0161300:CDS |
| AATAGTGGCACTTACCATGA+TGG | 0.645072 | 1_4:-36166976 | Msa0161300:CDS |
| CAATGAAGATGATGATGATG+GGG | 0.651017 | 1_4:-36165498 | Msa0161300:CDS |
| TGATGATGGGGAATGCATTG+TGG | 0.656507 | 1_4:-36165486 | Msa0161300:CDS |
| AAATGATGGTGAAAGCATTG+TGG | 0.661701 | 1_4:-36165456 | Msa0161300:CDS |
| TGGGAAGGTGAAGAAGACAC+TGG | 0.669846 | 1_4:-36167063 | Msa0161300:CDS |
| ATTGTGGACAAAGAAAATGA+TGG | 0.682219 | 1_4:-36165470 | Msa0161300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTATTAATTTATTTTG+AGG | - | chr1_4:36165972-36165991 | Msa0161300:intron | 10.0% |
| !!! | TTGATTAGTTATTAATTTTT+TGG | - | chr1_4:36165998-36166017 | Msa0161300:intron | 10.0% |
| !!! | TGATTAGTTATTAATTTTTT+GGG | - | chr1_4:36165999-36166018 | Msa0161300:intron | 10.0% |
| !! | TATTATATAACAATAAATGT+AGG | + | chr1_4:36166362-36166381 | None:intergenic | 10.0% |
| !!! | AAATTTACCAATTTTTTTTT+TGG | - | chr1_4:36166778-36166797 | Msa0161300:CDS | 10.0% |
| !!! | TTTTATACCAAAAAAAAAAT+TGG | + | chr1_4:36166788-36166807 | None:intergenic | 10.0% |
| !!! | GTTATTATTAATTTATTTTG+AGG | - | chr1_4:36165972-36165991 | Msa0161300:intron | 10.0% |
| !!! | TTGATTAGTTATTAATTTTT+TGG | - | chr1_4:36165998-36166017 | Msa0161300:intron | 10.0% |
| !!! | TGATTAGTTATTAATTTTTT+GGG | - | chr1_4:36165999-36166018 | Msa0161300:intron | 10.0% |
| !! | TATTATATAACAATAAATGT+AGG | + | chr1_4:36166362-36166381 | None:intergenic | 10.0% |
| !!! | AAATTTACCAATTTTTTTTT+TGG | - | chr1_4:36166778-36166797 | Msa0161300:CDS | 10.0% |
| !!! | TTTTATACCAAAAAAAAAAT+TGG | + | chr1_4:36166788-36166807 | None:intergenic | 10.0% |
| !!! | TTTGTATCTTTTTTTTTTGT+AGG | - | chr1_4:36165814-36165833 | Msa0161300:intron | 15.0% |
| !!! | ATACGTTTTTTTTTTTTTGA+AGG | + | chr1_4:36166502-36166521 | None:intergenic | 15.0% |
| !!! | CATTTTTAAGTATTCAATAA+TGG | - | chr1_4:36166608-36166627 | Msa0161300:intron | 15.0% |
| !!! | TCCTATTTTTATCTTATTTT+TGG | - | chr1_4:36166635-36166654 | Msa0161300:intron | 15.0% |
| !!! | CCTATTTTTATCTTATTTTT+GGG | - | chr1_4:36166636-36166655 | Msa0161300:intron | 15.0% |
| !!! | AAATTGGTAAATTTTACTTT+TGG | + | chr1_4:36166772-36166791 | None:intergenic | 15.0% |
| !!! | TCAAATGTTTTTCATAAAAT+AGG | + | chr1_4:36166851-36166870 | None:intergenic | 15.0% |
| !!! | TTTGTATCTTTTTTTTTTGT+AGG | - | chr1_4:36165814-36165833 | Msa0161300:intron | 15.0% |
| !!! | ATACGTTTTTTTTTTTTTGA+AGG | + | chr1_4:36166502-36166521 | None:intergenic | 15.0% |
| !!! | CATTTTTAAGTATTCAATAA+TGG | - | chr1_4:36166608-36166627 | Msa0161300:intron | 15.0% |
| !!! | TCCTATTTTTATCTTATTTT+TGG | - | chr1_4:36166635-36166654 | Msa0161300:intron | 15.0% |
| !!! | CCTATTTTTATCTTATTTTT+GGG | - | chr1_4:36166636-36166655 | Msa0161300:intron | 15.0% |
| !!! | AAATTGGTAAATTTTACTTT+TGG | + | chr1_4:36166772-36166791 | None:intergenic | 15.0% |
| !!! | TCAAATGTTTTTCATAAAAT+AGG | + | chr1_4:36166851-36166870 | None:intergenic | 15.0% |
| !! | TAATACAAAGTCTCATTATA+AGG | - | chr1_4:36166236-36166255 | Msa0161300:intron | 20.0% |
| !! | AAAAAGATGTGAGAAATATT+TGG | - | chr1_4:36166265-36166284 | Msa0161300:intron | 20.0% |
| !! | AATTGATCATATGTAATGTA+AGG | - | chr1_4:36166391-36166410 | Msa0161300:CDS | 20.0% |
| !! | ATTGATCATATGTAATGTAA+GGG | - | chr1_4:36166392-36166411 | Msa0161300:CDS | 20.0% |
| !! | CCCAAAAATAAGATAAAAAT+AGG | + | chr1_4:36166639-36166658 | None:intergenic | 20.0% |
| !! | TCATCTCAATACAATAAAAT+TGG | + | chr1_4:36166816-36166835 | None:intergenic | 20.0% |
| !! | TAATACAAAGTCTCATTATA+AGG | - | chr1_4:36166236-36166255 | Msa0161300:intron | 20.0% |
| !! | AAAAAGATGTGAGAAATATT+TGG | - | chr1_4:36166265-36166284 | Msa0161300:intron | 20.0% |
| !! | AATTGATCATATGTAATGTA+AGG | - | chr1_4:36166391-36166410 | Msa0161300:CDS | 20.0% |
| !! | ATTGATCATATGTAATGTAA+GGG | - | chr1_4:36166392-36166411 | Msa0161300:CDS | 20.0% |
| !! | CCCAAAAATAAGATAAAAAT+AGG | + | chr1_4:36166639-36166658 | None:intergenic | 20.0% |
| !! | TCATCTCAATACAATAAAAT+TGG | + | chr1_4:36166816-36166835 | None:intergenic | 20.0% |
| !! | TGTTATGGATTTTATTGTAG+AGG | + | chr1_4:36165369-36165388 | None:intergenic | 25.0% |
| ! | AAACAAATCGTATTCAAGAA+TGG | + | chr1_4:36165413-36165432 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+TGG | - | chr1_4:36165412-36165431 | Msa0161300:CDS | 25.0% |
| ! | TTAAGGTAGTGAAGAAATAT+AGG | + | chr1_4:36165504-36165523 | None:intergenic | 25.0% |
| ! | TTCTTATCAAAGATTTGTCA+AGG | + | chr1_4:36165720-36165739 | None:intergenic | 25.0% |
| ! | ATCTTTGATAAGAAATCCTT+TGG | - | chr1_4:36165726-36165745 | Msa0161300:intron | 25.0% |
| ! | AATCAAGTAACTTACAGATA+TGG | + | chr1_4:36165930-36165949 | None:intergenic | 25.0% |
| ! | AATGAATACATTTCAAGATC+CGG | - | chr1_4:36166068-36166087 | Msa0161300:intron | 25.0% |
| ! | ATGTTAAAGAGAAAAACAAC+CGG | + | chr1_4:36166090-36166109 | None:intergenic | 25.0% |
| !! | TTCTTGATTTGATGATATGT+AGG | - | chr1_4:36166122-36166141 | Msa0161300:intron | 25.0% |
| !! | TCTTGATTTGATGATATGTA+GGG | - | chr1_4:36166123-36166142 | Msa0161300:intron | 25.0% |
| !! | AGGACAATCTTTAAAAATGT+AGG | + | chr1_4:36166342-36166361 | None:intergenic | 25.0% |
| ! | AATGATAGTAACATACTAAC+TGG | + | chr1_4:36166592-36166611 | None:intergenic | 25.0% |
| ! | CTGAACATGAAAAAAAGTTA+AGG | + | chr1_4:36166876-36166895 | None:intergenic | 25.0% |
| !!! | AACTTTTTTTCATGTTCAGT+AGG | - | chr1_4:36166877-36166896 | Msa0161300:intron | 25.0% |
| !!! | GAACTTCACATTTTTTTTCT+GGG | - | chr1_4:36166915-36166934 | Msa0161300:intron | 25.0% |
| ! | TAAAGTTTAATCCTTTGACA+TGG | + | chr1_4:36166986-36167005 | None:intergenic | 25.0% |
| ! | AATTAGAATGCAAAATGAGT+TGG | + | chr1_4:36167044-36167063 | None:intergenic | 25.0% |
| ! | AACTCTTCATGAAACTTATT+GGG | + | chr1_4:36167323-36167342 | None:intergenic | 25.0% |
| ! | TAACTCTTCATGAAACTTAT+TGG | + | chr1_4:36167324-36167343 | None:intergenic | 25.0% |
| ! | GTTTCATGAAGAGTTATTAT+TGG | - | chr1_4:36167328-36167347 | Msa0161300:CDS | 25.0% |
| !! | TGTTATGGATTTTATTGTAG+AGG | + | chr1_4:36165369-36165388 | None:intergenic | 25.0% |
| ! | AAACAAATCGTATTCAAGAA+TGG | + | chr1_4:36165413-36165432 | None:intergenic | 25.0% |
| !! | ATTCTTGAATACGATTTGTT+TGG | - | chr1_4:36165412-36165431 | Msa0161300:CDS | 25.0% |
| ! | TTAAGGTAGTGAAGAAATAT+AGG | + | chr1_4:36165504-36165523 | None:intergenic | 25.0% |
| ! | TTCTTATCAAAGATTTGTCA+AGG | + | chr1_4:36165720-36165739 | None:intergenic | 25.0% |
| ! | ATCTTTGATAAGAAATCCTT+TGG | - | chr1_4:36165726-36165745 | Msa0161300:intron | 25.0% |
| ! | AATCAAGTAACTTACAGATA+TGG | + | chr1_4:36165930-36165949 | None:intergenic | 25.0% |
| ! | AATGAATACATTTCAAGATC+CGG | - | chr1_4:36166068-36166087 | Msa0161300:intron | 25.0% |
| ! | ATGTTAAAGAGAAAAACAAC+CGG | + | chr1_4:36166090-36166109 | None:intergenic | 25.0% |
| !! | TTCTTGATTTGATGATATGT+AGG | - | chr1_4:36166122-36166141 | Msa0161300:intron | 25.0% |
| !! | TCTTGATTTGATGATATGTA+GGG | - | chr1_4:36166123-36166142 | Msa0161300:intron | 25.0% |
| !! | AGGACAATCTTTAAAAATGT+AGG | + | chr1_4:36166342-36166361 | None:intergenic | 25.0% |
| ! | AATGATAGTAACATACTAAC+TGG | + | chr1_4:36166592-36166611 | None:intergenic | 25.0% |
| ! | CTGAACATGAAAAAAAGTTA+AGG | + | chr1_4:36166876-36166895 | None:intergenic | 25.0% |
| !!! | AACTTTTTTTCATGTTCAGT+AGG | - | chr1_4:36166877-36166896 | Msa0161300:intron | 25.0% |
| !!! | GAACTTCACATTTTTTTTCT+GGG | - | chr1_4:36166915-36166934 | Msa0161300:intron | 25.0% |
| ! | TAAAGTTTAATCCTTTGACA+TGG | + | chr1_4:36166986-36167005 | None:intergenic | 25.0% |
| ! | AATTAGAATGCAAAATGAGT+TGG | + | chr1_4:36167044-36167063 | None:intergenic | 25.0% |
| ! | AACTCTTCATGAAACTTATT+GGG | + | chr1_4:36167323-36167342 | None:intergenic | 25.0% |
| ! | TAACTCTTCATGAAACTTAT+TGG | + | chr1_4:36167324-36167343 | None:intergenic | 25.0% |
| ! | GTTTCATGAAGAGTTATTAT+TGG | - | chr1_4:36167328-36167347 | Msa0161300:CDS | 25.0% |
| TCTCAATTCTTCTTCAAGTA+AGG | - | chr1_4:36165303-36165322 | Msa0161300:CDS | 30.0% | |
| ! | GGATTTTATTGTAGAGGAAT+CGG | + | chr1_4:36165363-36165382 | None:intergenic | 30.0% |
| !! | AATTGGGAAGAGATTTGTTA+TGG | + | chr1_4:36165384-36165403 | None:intergenic | 30.0% |
| ! | TCAAGAATGGTGATGTAATT+GGG | + | chr1_4:36165400-36165419 | None:intergenic | 30.0% |
| ! | TTCAAGAATGGTGATGTAAT+TGG | + | chr1_4:36165401-36165420 | None:intergenic | 30.0% |
| AATATCCCAAGGATTCTTTA+GGG | + | chr1_4:36165440-36165459 | None:intergenic | 30.0% | |
| AAATATCCCAAGGATTCTTT+AGG | + | chr1_4:36165441-36165460 | None:intergenic | 30.0% | |
| TAAAGAATCCTTGGGATATT+TGG | - | chr1_4:36165440-36165459 | Msa0161300:CDS | 30.0% | |
| AAAGAATCCTTGGGATATTT+GGG | - | chr1_4:36165441-36165460 | Msa0161300:CDS | 30.0% | |
| !! | AGATTTCTTCTCTAAGGTTA+AGG | + | chr1_4:36165521-36165540 | None:intergenic | 30.0% |
| TCAAAAGTAGTTCGTTCTAT+TGG | - | chr1_4:36165550-36165569 | Msa0161300:intron | 30.0% | |
| !! | TGTTTTCGATTTGAGAATAG+TGG | - | chr1_4:36165655-36165674 | Msa0161300:intron | 30.0% |
| TGTATCATATTGCTTACCAA+AGG | + | chr1_4:36165745-36165764 | None:intergenic | 30.0% | |
| TCTGCATAGAACATAATTGT+TGG | + | chr1_4:36165840-36165859 | None:intergenic | 30.0% | |
| AGAAAGAATATTGATGCACA+AGG | - | chr1_4:36165863-36165882 | Msa0161300:intron | 30.0% | |
| GAACCAAGAAATGAATCAAA+TGG | - | chr1_4:36166189-36166208 | Msa0161300:intron | 30.0% | |
| AACGTATTAACACAGTTATC+TGG | - | chr1_4:36166515-36166534 | Msa0161300:intron | 30.0% | |
| !!! | CGAACTTCACATTTTTTTTC+TGG | - | chr1_4:36166914-36166933 | Msa0161300:intron | 30.0% |
| TTTAATCACATCCATGTCAA+AGG | - | chr1_4:36166972-36166991 | Msa0161300:CDS | 30.0% | |
| !!! | CTCTTGCATTCTCATTTTTT+AGG | - | chr1_4:36167091-36167110 | Msa0161300:CDS | 30.0% |
| ! | ACAATGAAGATGATGATGAT+GGG | - | chr1_4:36167147-36167166 | Msa0161300:CDS | 30.0% |
| ATTGTGGACAAAGAAAATGA+TGG | - | chr1_4:36167176-36167195 | Msa0161300:CDS | 30.0% | |
| TCTCAATTCTTCTTCAAGTA+AGG | - | chr1_4:36165303-36165322 | Msa0161300:CDS | 30.0% | |
| ! | GGATTTTATTGTAGAGGAAT+CGG | + | chr1_4:36165363-36165382 | None:intergenic | 30.0% |
| !! | AATTGGGAAGAGATTTGTTA+TGG | + | chr1_4:36165384-36165403 | None:intergenic | 30.0% |
| ! | TCAAGAATGGTGATGTAATT+GGG | + | chr1_4:36165400-36165419 | None:intergenic | 30.0% |
| ! | TTCAAGAATGGTGATGTAAT+TGG | + | chr1_4:36165401-36165420 | None:intergenic | 30.0% |
| AATATCCCAAGGATTCTTTA+GGG | + | chr1_4:36165440-36165459 | None:intergenic | 30.0% | |
| AAATATCCCAAGGATTCTTT+AGG | + | chr1_4:36165441-36165460 | None:intergenic | 30.0% | |
| TAAAGAATCCTTGGGATATT+TGG | - | chr1_4:36165440-36165459 | Msa0161300:CDS | 30.0% | |
| AAAGAATCCTTGGGATATTT+GGG | - | chr1_4:36165441-36165460 | Msa0161300:CDS | 30.0% | |
| !! | AGATTTCTTCTCTAAGGTTA+AGG | + | chr1_4:36165521-36165540 | None:intergenic | 30.0% |
| TCAAAAGTAGTTCGTTCTAT+TGG | - | chr1_4:36165550-36165569 | Msa0161300:intron | 30.0% | |
| !! | TGTTTTCGATTTGAGAATAG+TGG | - | chr1_4:36165655-36165674 | Msa0161300:intron | 30.0% |
| TGTATCATATTGCTTACCAA+AGG | + | chr1_4:36165745-36165764 | None:intergenic | 30.0% | |
| TCTGCATAGAACATAATTGT+TGG | + | chr1_4:36165840-36165859 | None:intergenic | 30.0% | |
| AGAAAGAATATTGATGCACA+AGG | - | chr1_4:36165863-36165882 | Msa0161300:intron | 30.0% | |
| GAACCAAGAAATGAATCAAA+TGG | - | chr1_4:36166189-36166208 | Msa0161300:intron | 30.0% | |
| AACGTATTAACACAGTTATC+TGG | - | chr1_4:36166515-36166534 | Msa0161300:intron | 30.0% | |
| !!! | CGAACTTCACATTTTTTTTC+TGG | - | chr1_4:36166914-36166933 | Msa0161300:intron | 30.0% |
| TTTAATCACATCCATGTCAA+AGG | - | chr1_4:36166972-36166991 | Msa0161300:CDS | 30.0% | |
| !!! | CTCTTGCATTCTCATTTTTT+AGG | - | chr1_4:36167091-36167110 | Msa0161300:CDS | 30.0% |
| ! | ACAATGAAGATGATGATGAT+GGG | - | chr1_4:36167147-36167166 | Msa0161300:CDS | 30.0% |
| ATTGTGGACAAAGAAAATGA+TGG | - | chr1_4:36167176-36167195 | Msa0161300:CDS | 30.0% | |
| AGTGGTAGATTTCTTCTCTA+AGG | + | chr1_4:36165527-36165546 | None:intergenic | 35.0% | |
| GTAGTTCGTTCTATTGGAAT+TGG | - | chr1_4:36165556-36165575 | Msa0161300:intron | 35.0% | |
| TTCTATTGGAATTGGTGCAT+GGG | - | chr1_4:36165564-36165583 | Msa0161300:intron | 35.0% | |
| AAAAACAAGAACCAACTCCT+TGG | - | chr1_4:36165622-36165641 | Msa0161300:intron | 35.0% | |
| !!! | GAAAACACTTTTTCACACCA+AGG | + | chr1_4:36165642-36165661 | None:intergenic | 35.0% |
| CAAGTAACTTACAGATATGG+TGG | + | chr1_4:36165927-36165946 | None:intergenic | 35.0% | |
| CCACCATTTGATTCATTTCT+TGG | + | chr1_4:36166195-36166214 | None:intergenic | 35.0% | |
| CCAAGAAATGAATCAAATGG+TGG | - | chr1_4:36166192-36166211 | Msa0161300:intron | 35.0% | |
| TCAAGAGAGACAACTATTCT+TGG | - | chr1_4:36166288-36166307 | Msa0161300:intron | 35.0% | |
| TGTAGGACTTACAAATTCGT+TGG | + | chr1_4:36166325-36166344 | None:intergenic | 35.0% | |
| !! | CAGGTTGAACTATTGGATTT+TGG | + | chr1_4:36167127-36167146 | None:intergenic | 35.0% |
| !! | TCATTGTCAGGTTGAACTAT+TGG | + | chr1_4:36167134-36167153 | None:intergenic | 35.0% |
| TCATCATCATCTTCATTGTC+AGG | + | chr1_4:36167146-36167165 | None:intergenic | 35.0% | |
| ! | GACAATGAAGATGATGATGA+TGG | - | chr1_4:36167146-36167165 | Msa0161300:CDS | 35.0% |
| ! | CAATGAAGATGATGATGATG+GGG | - | chr1_4:36167148-36167167 | Msa0161300:CDS | 35.0% |
| !! | AAATGATGGTGAAAGCATTG+TGG | - | chr1_4:36167190-36167209 | Msa0161300:CDS | 35.0% |
| GAGCTGATAGAGATTAATGA+AGG | - | chr1_4:36167263-36167282 | Msa0161300:CDS | 35.0% | |
| AGTGGTAGATTTCTTCTCTA+AGG | + | chr1_4:36165527-36165546 | None:intergenic | 35.0% | |
| GTAGTTCGTTCTATTGGAAT+TGG | - | chr1_4:36165556-36165575 | Msa0161300:intron | 35.0% | |
| TTCTATTGGAATTGGTGCAT+GGG | - | chr1_4:36165564-36165583 | Msa0161300:intron | 35.0% | |
| AAAAACAAGAACCAACTCCT+TGG | - | chr1_4:36165622-36165641 | Msa0161300:intron | 35.0% | |
| !!! | GAAAACACTTTTTCACACCA+AGG | + | chr1_4:36165642-36165661 | None:intergenic | 35.0% |
| CAAGTAACTTACAGATATGG+TGG | + | chr1_4:36165927-36165946 | None:intergenic | 35.0% | |
| CCACCATTTGATTCATTTCT+TGG | + | chr1_4:36166195-36166214 | None:intergenic | 35.0% | |
| CCAAGAAATGAATCAAATGG+TGG | - | chr1_4:36166192-36166211 | Msa0161300:intron | 35.0% | |
| TCAAGAGAGACAACTATTCT+TGG | - | chr1_4:36166288-36166307 | Msa0161300:intron | 35.0% | |
| TGTAGGACTTACAAATTCGT+TGG | + | chr1_4:36166325-36166344 | None:intergenic | 35.0% | |
| !! | CAGGTTGAACTATTGGATTT+TGG | + | chr1_4:36167127-36167146 | None:intergenic | 35.0% |
| !! | TCATTGTCAGGTTGAACTAT+TGG | + | chr1_4:36167134-36167153 | None:intergenic | 35.0% |
| TCATCATCATCTTCATTGTC+AGG | + | chr1_4:36167146-36167165 | None:intergenic | 35.0% | |
| ! | GACAATGAAGATGATGATGA+TGG | - | chr1_4:36167146-36167165 | Msa0161300:CDS | 35.0% |
| ! | CAATGAAGATGATGATGATG+GGG | - | chr1_4:36167148-36167167 | Msa0161300:CDS | 35.0% |
| !! | AAATGATGGTGAAAGCATTG+TGG | - | chr1_4:36167190-36167209 | Msa0161300:CDS | 35.0% |
| GAGCTGATAGAGATTAATGA+AGG | - | chr1_4:36167263-36167282 | Msa0161300:CDS | 35.0% | |
| TTGGTACCCTAAAGAATCCT+TGG | - | chr1_4:36165431-36165450 | Msa0161300:CDS | 40.0% | |
| TGGTACCCTAAAGAATCCTT+GGG | - | chr1_4:36165432-36165451 | Msa0161300:CDS | 40.0% | |
| AACTCTTCCCAAATATCCCA+AGG | + | chr1_4:36165451-36165470 | None:intergenic | 40.0% | |
| TGGGATATTTGGGAAGAGTT+TGG | - | chr1_4:36165451-36165470 | Msa0161300:CDS | 40.0% | |
| !! | ACGAACTACTTTTGAGCTAG+TGG | + | chr1_4:36165545-36165564 | None:intergenic | 40.0% |
| GTTCTATTGGAATTGGTGCA+TGG | - | chr1_4:36165563-36165582 | Msa0161300:intron | 40.0% | |
| !!! | ACTTTTTCACACCAAGGAGT+TGG | + | chr1_4:36165636-36165655 | None:intergenic | 40.0% |
| AATAGTGGCACTTACCATGA+TGG | - | chr1_4:36165670-36165689 | Msa0161300:intron | 40.0% | |
| GAAAGAAAGACCATTGTTCC+TGG | - | chr1_4:36165890-36165909 | Msa0161300:intron | 40.0% | |
| TGGACACAGTAGCACAAATA+TGG | - | chr1_4:36166212-36166231 | Msa0161300:intron | 40.0% | |
| ! | AGAATGCAAGAGCACAACAA+GGG | + | chr1_4:36167083-36167102 | None:intergenic | 40.0% |
| ! | ATGATGATGCTGGTATGTCT+TGG | - | chr1_4:36167222-36167241 | Msa0161300:CDS | 40.0% |
| ! | TTGGCCTGAGATTTTTGCAA+AGG | - | chr1_4:36167241-36167260 | Msa0161300:CDS | 40.0% |
| AGCTCCTTTGCAAAAATCTC+AGG | + | chr1_4:36167248-36167267 | None:intergenic | 40.0% | |
| ! | TGAAGGATGCTTGTTAGAAG+AGG | - | chr1_4:36167280-36167299 | Msa0161300:CDS | 40.0% |
| ! | ATGCTTGTTAGAAGAGGAAG+AGG | - | chr1_4:36167286-36167305 | Msa0161300:CDS | 40.0% |
| TTGGTACCCTAAAGAATCCT+TGG | - | chr1_4:36165431-36165450 | Msa0161300:CDS | 40.0% | |
| TGGTACCCTAAAGAATCCTT+GGG | - | chr1_4:36165432-36165451 | Msa0161300:CDS | 40.0% | |
| AACTCTTCCCAAATATCCCA+AGG | + | chr1_4:36165451-36165470 | None:intergenic | 40.0% | |
| TGGGATATTTGGGAAGAGTT+TGG | - | chr1_4:36165451-36165470 | Msa0161300:CDS | 40.0% | |
| !! | ACGAACTACTTTTGAGCTAG+TGG | + | chr1_4:36165545-36165564 | None:intergenic | 40.0% |
| GTTCTATTGGAATTGGTGCA+TGG | - | chr1_4:36165563-36165582 | Msa0161300:intron | 40.0% | |
| !!! | ACTTTTTCACACCAAGGAGT+TGG | + | chr1_4:36165636-36165655 | None:intergenic | 40.0% |
| AATAGTGGCACTTACCATGA+TGG | - | chr1_4:36165670-36165689 | Msa0161300:intron | 40.0% | |
| GAAAGAAAGACCATTGTTCC+TGG | - | chr1_4:36165890-36165909 | Msa0161300:intron | 40.0% | |
| TGGACACAGTAGCACAAATA+TGG | - | chr1_4:36166212-36166231 | Msa0161300:intron | 40.0% | |
| ! | AGAATGCAAGAGCACAACAA+GGG | + | chr1_4:36167083-36167102 | None:intergenic | 40.0% |
| ! | ATGATGATGCTGGTATGTCT+TGG | - | chr1_4:36167222-36167241 | Msa0161300:CDS | 40.0% |
| ! | TTGGCCTGAGATTTTTGCAA+AGG | - | chr1_4:36167241-36167260 | Msa0161300:CDS | 40.0% |
| AGCTCCTTTGCAAAAATCTC+AGG | + | chr1_4:36167248-36167267 | None:intergenic | 40.0% | |
| ! | TGAAGGATGCTTGTTAGAAG+AGG | - | chr1_4:36167280-36167299 | Msa0161300:CDS | 40.0% |
| ! | ATGCTTGTTAGAAGAGGAAG+AGG | - | chr1_4:36167286-36167305 | Msa0161300:CDS | 40.0% |
| ATTGGAATTGGTGCATGGGA+AGG | - | chr1_4:36165568-36165587 | Msa0161300:intron | 45.0% | |
| ! | GAGAATGCAAGAGCACAACA+AGG | + | chr1_4:36167084-36167103 | None:intergenic | 45.0% |
| !! | TGATGATGGGGAATGCATTG+TGG | - | chr1_4:36167160-36167179 | Msa0161300:CDS | 45.0% |
| ! | GACGAAGAAGATGATGATGC+TGG | - | chr1_4:36167212-36167231 | Msa0161300:CDS | 45.0% |
| ATTGGAATTGGTGCATGGGA+AGG | - | chr1_4:36165568-36165587 | Msa0161300:intron | 45.0% | |
| ! | GAGAATGCAAGAGCACAACA+AGG | + | chr1_4:36167084-36167103 | None:intergenic | 45.0% |
| !! | TGATGATGGGGAATGCATTG+TGG | - | chr1_4:36167160-36167179 | Msa0161300:CDS | 45.0% |
| ! | GACGAAGAAGATGATGATGC+TGG | - | chr1_4:36167212-36167231 | Msa0161300:CDS | 45.0% |
| TGGGAAGGTGAAGAAGACAC+TGG | - | chr1_4:36165583-36165602 | Msa0161300:intron | 50.0% | |
| ! | GCACTTACCATGATGGTGCA+TGG | - | chr1_4:36165677-36165696 | Msa0161300:intron | 50.0% |
| GCAAGATCCATGCACCATCA+TGG | + | chr1_4:36165687-36165706 | None:intergenic | 50.0% | |
| TTCTGCACGTCCAGGAACAA+TGG | + | chr1_4:36165903-36165922 | None:intergenic | 50.0% | |
| ! | GCAAGAGCACAACAAGGGAT+TGG | + | chr1_4:36167078-36167097 | None:intergenic | 50.0% |
| TGGGAAGGTGAAGAAGACAC+TGG | - | chr1_4:36165583-36165602 | Msa0161300:intron | 50.0% | |
| ! | GCACTTACCATGATGGTGCA+TGG | - | chr1_4:36165677-36165696 | Msa0161300:intron | 50.0% |
| GCAAGATCCATGCACCATCA+TGG | + | chr1_4:36165687-36165706 | None:intergenic | 50.0% | |
| TTCTGCACGTCCAGGAACAA+TGG | + | chr1_4:36165903-36165922 | None:intergenic | 50.0% | |
| ! | GCAAGAGCACAACAAGGGAT+TGG | + | chr1_4:36167078-36167097 | None:intergenic | 50.0% |
| ATGGTGGTTTCTGCACGTCC+AGG | + | chr1_4:36165911-36165930 | None:intergenic | 55.0% | |
| ATGGTGGTTTCTGCACGTCC+AGG | + | chr1_4:36165911-36165930 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36165298 | 36167370 | 36165298 | ID=Msa0161300;Name=Msa0161300 |
| chr1_4 | mRNA | 36165298 | 36167370 | 36165298 | ID=Msa0161300-mRNA-1;Parent=Msa0161300;Name=Msa0161300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|331 |
| chr1_4 | exon | 36166921 | 36167370 | 36166921 | ID=Msa0161300-mRNA-1:exon:10731;Parent=Msa0161300-mRNA-1 |
| chr1_4 | exon | 36166734 | 36166832 | 36166734 | ID=Msa0161300-mRNA-1:exon:10730;Parent=Msa0161300-mRNA-1 |
| chr1_4 | exon | 36166336 | 36166524 | 36166336 | ID=Msa0161300-mRNA-1:exon:10729;Parent=Msa0161300-mRNA-1 |
| chr1_4 | exon | 36165298 | 36165555 | 36165298 | ID=Msa0161300-mRNA-1:exon:10728;Parent=Msa0161300-mRNA-1 |
| chr1_4 | CDS | 36166921 | 36167370 | 36166921 | ID=Msa0161300-mRNA-1:cds;Parent=Msa0161300-mRNA-1 |
| chr1_4 | CDS | 36166734 | 36166832 | 36166734 | ID=Msa0161300-mRNA-1:cds;Parent=Msa0161300-mRNA-1 |
| chr1_4 | CDS | 36166336 | 36166524 | 36166336 | ID=Msa0161300-mRNA-1:cds;Parent=Msa0161300-mRNA-1 |
| chr1_4 | CDS | 36165298 | 36165555 | 36165298 | ID=Msa0161300-mRNA-1:cds;Parent=Msa0161300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
