AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0161330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0161330 MtrunA17_Chr1g0175021 89.565 230 23 1 116 344 8 237 1.00e-149 421
Msa0161330 MtrunA17_Chr7g0258471 50.445 337 117 11 23 341 91 395 2.53e-81 253
Msa0161330 MtrunA17_Chr1g0175031 90.196 102 8 1 17 118 17 116 3.29e-52 169
Msa0161330 MtrunA17_Chr3g0122411 35.192 287 131 10 8 268 111 368 1.74e-30 120
Msa0161330 MtrunA17_Chr7g0231911 45.255 137 46 3 20 142 101 222 1.55e-26 107
Msa0161330 MtrunA17_Chr8g0334671 42.857 154 62 4 2 144 124 262 3.01e-26 106
Msa0161330 MtrunA17_Chr5g0420051 57.955 88 29 2 76 156 181 267 1.01e-25 107
Msa0161330 MtrunA17_Chr3g0132091 37.640 178 92 3 18 176 15 192 1.31e-25 105
Msa0161330 MtrunA17_Chr4g0061651 58.333 96 31 2 58 144 103 198 1.81e-25 106
Msa0161330 MtrunA17_Chr8g0360361 60.759 79 24 1 76 147 65 143 3.06e-25 100
Msa0161330 MtrunA17_Chr2g0308321 63.158 76 21 1 76 144 171 246 1.21e-24 104
Msa0161330 MtrunA17_Chr4g0046991 56.989 93 30 2 57 142 57 146 1.51e-24 97.8
Msa0161330 MtrunA17_Chr8g0386271 48.544 103 39 2 76 171 99 194 6.94e-24 101
Msa0161330 MtrunA17_Chr2g0282521 62.162 74 21 1 76 142 64 137 2.82e-23 94.0
Msa0161330 MtrunA17_Chr2g0302791 58.228 79 26 1 76 147 139 217 1.56e-22 99.0
Msa0161330 MtrunA17_Chr8g0377401 42.857 133 49 3 16 141 122 234 1.86e-22 94.7
Msa0161330 MtrunA17_Chr7g0224821 47.573 103 41 2 76 171 77 173 2.24e-22 96.7
Msa0161330 MtrunA17_Chr1g0162871 54.545 88 33 1 76 156 104 191 2.13e-21 95.5
Msa0161330 MtrunA17_Chr7g0270541 59.459 74 23 1 76 142 145 218 4.51e-21 94.7
Msa0161330 MtrunA17_Chr1g0194121 60.811 74 22 1 76 142 147 220 6.91e-21 94.0
Msa0161330 MtrunA17_Chr8g0377421 53.247 77 29 1 73 142 129 205 6.53e-19 85.9
Msa0161330 MtrunA17_Chr2g0286661 47.297 74 32 1 76 142 103 176 5.10e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0161330 AT3G57920.1 41.516 277 98 12 23 277 27 261 1.22e-42 151
Msa0161330 AT2G42200.1 43.210 243 105 7 23 251 32 255 2.43e-42 151
Msa0161330 AT5G43270.3 47.794 136 50 3 22 145 119 245 3.38e-26 108
Msa0161330 AT5G43270.1 47.794 136 50 3 22 145 119 245 3.38e-26 108
Msa0161330 AT5G43270.2 47.794 136 50 3 22 145 119 245 3.38e-26 108
Msa0161330 AT2G33810.1 63.514 74 20 1 76 142 54 127 5.07e-26 101
Msa0161330 AT3G15270.1 57.317 82 28 1 74 148 61 142 3.28e-25 100
Msa0161330 AT1G69170.1 55.340 103 36 3 76 171 124 223 1.69e-24 103
Msa0161330 AT5G50570.1 44.444 144 65 4 15 145 36 177 6.21e-24 101
Msa0161330 AT5G50570.2 44.444 144 65 4 15 145 36 177 6.21e-24 101
Msa0161330 AT5G50670.1 44.444 144 65 4 15 145 36 177 6.21e-24 101
Msa0161330 AT5G50670.2 44.444 144 65 4 15 145 36 177 6.21e-24 101
Msa0161330 AT1G27370.6 51.579 95 33 2 75 162 175 263 1.44e-23 100
Msa0161330 AT1G02065.1 44.186 129 49 3 22 142 148 261 1.60e-23 99.8
Msa0161330 AT2G47070.1 62.338 77 22 1 76 145 106 182 2.19e-23 102
Msa0161330 AT1G53160.3 58.025 81 27 1 74 147 52 132 2.30e-23 95.5
Msa0161330 AT1G27370.1 51.579 95 33 2 75 162 175 263 2.69e-23 100
Msa0161330 AT1G27370.5 51.579 95 33 2 75 162 175 263 2.69e-23 100
Msa0161330 AT1G27370.3 51.579 95 33 2 75 162 175 263 2.69e-23 100
Msa0161330 AT1G27370.2 51.579 95 33 2 75 162 175 263 2.69e-23 100
Msa0161330 AT1G27370.4 51.579 95 33 2 75 162 175 263 2.69e-23 100
Msa0161330 AT1G27370.7 51.579 95 33 2 75 162 175 263 2.69e-23 100
Msa0161330 AT1G53160.2 60.526 76 23 1 74 142 52 127 3.01e-23 95.1
Msa0161330 AT1G53160.1 60.526 76 23 1 74 142 52 127 3.01e-23 95.1
Msa0161330 AT1G27360.2 58.442 77 25 1 75 144 174 250 6.48e-23 99.0
Msa0161330 AT1G27360.1 58.442 77 25 1 75 144 174 250 6.48e-23 99.0
Msa0161330 AT1G27360.3 58.442 77 25 1 75 144 174 250 6.48e-23 99.0
Msa0161330 AT1G27360.4 58.442 77 25 1 75 144 174 250 6.48e-23 99.0
Msa0161330 AT3G60030.1 53.261 92 33 2 67 148 115 206 1.14e-22 99.8
Msa0161330 AT1G76580.2 56.471 85 29 2 71 148 110 193 6.57e-22 97.4
Msa0161330 AT1G76580.1 56.471 85 29 2 71 148 110 193 7.14e-22 97.4
Msa0161330 AT1G76580.3 56.471 85 29 2 71 148 110 193 7.24e-22 97.1
Msa0161330 AT1G20980.1 42.857 140 70 4 69 199 114 252 9.48e-22 97.1
Msa0161330 AT5G18830.1 47.619 84 36 2 68 143 130 213 7.23e-16 79.3
Msa0161330 AT5G18830.3 47.619 84 36 2 68 143 130 213 7.43e-16 79.3
Msa0161330 AT5G18830.2 47.619 84 36 2 68 143 130 213 7.60e-16 79.3
Msa0161330 AT2G47070.2 62.264 53 13 1 100 145 1 53 2.08e-12 68.6
Msa0161330 AT1G02065.2 38.776 98 44 2 22 118 148 230 1.29e-11 64.3

Find 92 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTTCTGTTGTTGTTTC+TGG 0.016193 1_4:-36275301 Msa0161330:CDS
TTCAAACAAATGCTTCTTCT+TGG 0.204356 1_4:-36271707 Msa0161330:CDS
TCATTGTAGTTATCCATTAT+TGG 0.242355 1_4:+36271882 None:intergenic
CTTTGAGGCATTATTTGTTT+TGG 0.249945 1_4:-36271385 Msa0161330:three_prime_UTR
GCTTTCTCCGCCTTTCATTA+TGG 0.263953 1_4:+36272471 None:intergenic
CGTTTCCCTTGATCAAATTC+AGG 0.267407 1_4:+36272518 None:intergenic
TCTTCATCATCTTCATCTTC+AGG 0.271781 1_4:-36275439 Msa0161330:CDS
ATTTGTTTGAAGTTGATAAT+TGG 0.275585 1_4:+36271719 None:intergenic
TTCTGTTGTTGTTTCTGGTT+TGG 0.298755 1_4:-36275296 Msa0161330:CDS
CCCGAGGATGTTCCTGATCT+TGG 0.303604 1_4:-36271648 Msa0161330:CDS
AAAGGTAGAAGAGGAGAGTT+TGG 0.318520 1_4:+36272415 None:intergenic
AAACTCTCCTCTTCTACCTT+TGG 0.328520 1_4:-36272413 Msa0161330:intron
TCATCTACCGAGTTTCTTGA+TGG 0.335549 1_4:-36275568 Msa0161330:CDS
CCACCAACACCAACAGCATT+AGG 0.337043 1_4:+36275472 None:intergenic
TTTCTTGATGGATTAAAGTT+TGG 0.342712 1_4:-36275556 Msa0161330:CDS
TACTAGACATCCTCCAATAA+TGG 0.345407 1_4:-36271895 Msa0161330:CDS
CTGGCACCACCAATGAGTTC+AGG 0.351780 1_4:-36275622 None:intergenic
CACAAGGCAAGAACCATTAC+TGG 0.360782 1_4:-36271569 Msa0161330:CDS
GGGAAAACGCGAGGTTAAAA+AGG 0.385183 1_4:+36272436 None:intergenic
CCTAATGCTGTTGGTGTTGG+TGG 0.385726 1_4:-36275472 Msa0161330:CDS
AACAACTTGTTGAATTTCAA+TGG 0.386985 1_4:-36271774 Msa0161330:CDS
GTCATTTGTGAAATTATAAC+TGG 0.390812 1_4:-36271523 Msa0161330:three_prime_UTR
CATGGAAGTTTGTTCCTTGT+AGG 0.402971 1_4:+36271925 None:intergenic
GAAATTATAACTGGTGGTAT+TGG 0.405660 1_4:-36271514 Msa0161330:three_prime_UTR
TTGTTTCTGGTTTGGAGCAA+AGG 0.417760 1_4:-36275288 Msa0161330:intron
TGTTTCTAGAGTACCATGTT+TGG 0.425256 1_4:+36271820 None:intergenic
CAGCTTCCTGAATTTGATCA+AGG 0.441323 1_4:-36272524 Msa0161330:CDS
TTTGTTTGAAGTTGATAATT+GGG 0.443503 1_4:+36271720 None:intergenic
AGAAACTCGGTAGATGAGTT+AGG 0.444243 1_4:+36275574 None:intergenic
GTTGTTTGAGCGCTGGGAAC+CGG 0.452280 1_4:+36271993 None:intergenic
GATGAGTTAGGTTGTGAAGA+GGG 0.463824 1_4:+36275586 None:intergenic
GTTTGTTTCAACTTATGAGC+AGG 0.471293 1_4:-36271428 Msa0161330:three_prime_UTR
GGAACCGGCTCGGCTGATCT+CGG 0.491836 1_4:+36272008 None:intergenic
AGTTGCCGCAGGCGACTAGC+TGG 0.499072 1_4:-36272494 Msa0161330:CDS
GATGTTCCTGATCTTGGTCT+CGG 0.501086 1_4:-36271642 Msa0161330:CDS
ATTATTGGAGGATGTCTAGT+AGG 0.503531 1_4:+36271897 None:intergenic
AATTGTGTTGTTTGAGCGCT+GGG 0.505324 1_4:+36271987 None:intergenic
AATTCCGAGATCAGCCGAGC+CGG 0.516665 1_4:-36272012 Msa0161330:CDS
GGTACAAAACCTGAACTCAT+TGG 0.518582 1_4:+36275613 None:intergenic
TCGTAACTGTTTGTCGCCCG+AGG 0.521144 1_4:-36271664 Msa0161330:CDS
CAAAGGTAATAACTTTCTGA+TGG 0.523398 1_4:-36272078 Msa0161330:CDS
ACCAAGATCAGGAACATCCT+CGG 0.523631 1_4:+36271647 None:intergenic
AAGGTAGAAGAGGAGAGTTT+GGG 0.526795 1_4:+36272416 None:intergenic
CCAAGATCAGGAACATCCTC+GGG 0.531635 1_4:+36271648 None:intergenic
GACTAGCTGGCCATAATGAA+AGG 0.532987 1_4:-36272481 Msa0161330:CDS
CAAATCAAACCTAATGCTGT+TGG 0.533702 1_4:-36275481 Msa0161330:CDS
AGCAAACAAGAGTATTAAAG+TGG 0.540068 1_4:+36271546 None:intergenic
TCTGTGTCAACAGATAATAA+TGG 0.540600 1_4:-36272101 Msa0161330:intron
CTCTTCTGTCAAACCAAACA+TGG 0.546120 1_4:-36271833 Msa0161330:CDS
AGTAGATCTGAGTGGTGCTA+AGG 0.546255 1_4:-36275365 Msa0161330:CDS
AGTATTAAAGTGGCCAGTAA+TGG 0.550747 1_4:+36271556 None:intergenic
TTGGCCTATGTGAACAATGT+GGG 0.552994 1_4:-36271366 Msa0161330:three_prime_UTR
TTGAGCGCTGGGAACCGGCT+CGG 0.556117 1_4:+36271998 None:intergenic
TTCATCTTCAGGAATGAAGA+GGG 0.561883 1_4:-36275428 Msa0161330:CDS
AGATGAGTTAGGTTGTGAAG+AGG 0.562239 1_4:+36275585 None:intergenic
AAACCAGAAACAACAACAGA+AGG 0.564585 1_4:+36275298 None:intergenic
TGGTCTCGGTCAAAATTCGC+AGG 0.566753 1_4:-36271628 Msa0161330:CDS
AAATTGTGTTGTTTGAGCGC+TGG 0.567389 1_4:+36271986 None:intergenic
TCAACAGATAATAATGGCAA+AGG 0.567701 1_4:-36272095 Msa0161330:intron
TTTCTAACCAAAGGTAGAAG+AGG 0.568592 1_4:+36272406 None:intergenic
AAGTTGAAACAAACAAAAGC+AGG 0.570923 1_4:+36271437 None:intergenic
AGCTTCCTGAATTTGATCAA+GGG 0.572503 1_4:-36272523 Msa0161330:CDS
CTCAAACAACACAATTTACC+TGG 0.572647 1_4:-36271980 Msa0161330:CDS
TTAGGTTGTGAAGAGGGAGA+AGG 0.574494 1_4:+36275592 None:intergenic
CTACAAGGAACAAACTTCCA+TGG 0.576359 1_4:-36271924 Msa0161330:CDS
CTTTAATCCATCAAGAAACT+CGG 0.578305 1_4:+36275561 None:intergenic
GCTATTCATAGCGATCTTCG+TGG 0.587187 1_4:-36271606 Msa0161330:CDS
AAGGGAAACGAAGTTGCCGC+AGG 0.588964 1_4:-36272505 Msa0161330:CDS
TTGTAGTTATCCATTATTGG+AGG 0.589950 1_4:+36271885 None:intergenic
AAACCTAATGCTGTTGGTGT+TGG 0.593485 1_4:-36275475 Msa0161330:CDS
TATGTGAAACTTTCAGACAT+GGG 0.598364 1_4:-36271332 None:intergenic
CTTCATCTTCAGGAATGAAG+AGG 0.601953 1_4:-36275429 Msa0161330:CDS
GTATGTGAAACTTTCAGACA+TGG 0.604908 1_4:-36271333 None:intergenic
GAACAACTCATCGACACCAT+CGG 0.616006 1_4:-36271955 Msa0161330:CDS
TGTCGATGAGTTGTTCTGCC+AGG 0.621982 1_4:+36271962 None:intergenic
ATTGGAGGATGTCTAGTAGG+AGG 0.622162 1_4:+36271900 None:intergenic
AAGTTGTTCATCTCAACACT+TGG 0.626493 1_4:+36271789 None:intergenic
TTTGGCCTATGTGAACAATG+TGG 0.627820 1_4:-36271367 Msa0161330:three_prime_UTR
GGTGAGGTCAACGTTTCACA+AGG 0.632696 1_4:-36271585 Msa0161330:CDS
TCAACCCACATTGTTCACAT+AGG 0.637989 1_4:+36271362 None:intergenic
GGAGAGTTTGGGAAAACGCG+AGG 0.638128 1_4:+36272427 None:intergenic
CCTTGTAGGATAAAATCCGA+TGG 0.645398 1_4:+36271939 None:intergenic
TCATAGCGATCTTCGTGGTG+AGG 0.646398 1_4:-36271601 Msa0161330:CDS
TATGGCCAGCTAGTCGCCTG+CGG 0.649873 1_4:+36272489 None:intergenic
ATTTGTGAAATTATAACTGG+TGG 0.659707 1_4:-36271520 Msa0161330:three_prime_UTR
ATGTGAAACTTTCAGACATG+GGG 0.660576 1_4:-36271331 None:intergenic
GATGTCTAGTAGGAGGACCA+TGG 0.664660 1_4:+36271907 None:intergenic
TCATCTTCAGGAATGAAGAG+GGG 0.688645 1_4:-36275427 Msa0161330:CDS
TAGCTGGCCATAATGAAAGG+CGG 0.700178 1_4:-36272478 Msa0161330:CDS
GCTTCAACTTGACACCTACG+TGG 0.700305 1_4:+36275394 None:intergenic
GGGGAAATAATCATCCACGT+AGG 0.738243 1_4:-36275408 Msa0161330:CDS
GCTTGTAAAGTAGATCTGAG+TGG 0.795108 1_4:-36275373 Msa0161330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAATATTAAATTATA+TGG - chr1_4:36273840-36273859 Msa0161330:intron 0.0%
!!! ATTTTAATATTAAATTATAT+GGG - chr1_4:36273841-36273860 Msa0161330:intron 0.0%
!!! TTTTAATATATATTGTTTGT+TGG - chr1_4:36271896-36271915 Msa0161330:CDS 10.0%
!!! ATTTTGTATTTCAATTTAAA+AGG - chr1_4:36272457-36272476 Msa0161330:CDS 10.0%
!!! TTTGTAATTTGTTTAAATAA+AGG + chr1_4:36273358-36273377 None:intergenic 10.0%
!! CTTTGATAAAATAAATAAAA+AGG + chr1_4:36274611-36274630 None:intergenic 10.0%
!!! ATGAATAAATTTTATTACTT+TGG + chr1_4:36274693-36274712 None:intergenic 10.0%
!!! ATAAAATTTATTCATTTTCT+TGG - chr1_4:36274698-36274717 Msa0161330:intron 10.0%
!!! ATTTTATTATTCTACAAATA+AGG + chr1_4:36274816-36274835 None:intergenic 10.0%
!! AATTATAAACAAAAGTAGAA+TGG + chr1_4:36271733-36271752 None:intergenic 15.0%
!! AAAGAAAAAAACACTAAAAA+AGG + chr1_4:36271779-36271798 None:intergenic 15.0%
!!! TGTTTTTTTCTTTCTATAAT+GGG - chr1_4:36271786-36271805 Msa0161330:CDS 15.0%
!! ATTTCATTTGAATTTGATAA+TGG - chr1_4:36271983-36272002 Msa0161330:CDS 15.0%
!!! ATAATTTGTAAATGTATGTT+TGG - chr1_4:36272494-36272513 Msa0161330:CDS 15.0%
!!! TTTAAAATGTATGATGTTTT+AGG - chr1_4:36272727-36272746 Msa0161330:intron 15.0%
!! AACAACAAAAGAAAAAAAAA+CGG + chr1_4:36272766-36272785 None:intergenic 15.0%
!!! ATGTTTCAAATAAATGTTTT+GGG - chr1_4:36272822-36272841 Msa0161330:intron 15.0%
!! CTAAATAAATAACACTTAAA+TGG + chr1_4:36274579-36274598 None:intergenic 15.0%
!!! ATTTTATCAAAGTTCAAATA+AGG - chr1_4:36274619-36274638 Msa0161330:intron 15.0%
!! AATGAAATGATTAATAGTTA+AGG - chr1_4:36274645-36274664 Msa0161330:intron 15.0%
!! ATGAAATGATTAATAGTTAA+GGG - chr1_4:36274646-36274665 Msa0161330:intron 15.0%
!!! GTGTTTTTTTCTTTCTATAA+TGG - chr1_4:36271785-36271804 Msa0161330:CDS 20.0%
!! TAAAAAAGACAAAATGAGTT+AGG + chr1_4:36271847-36271866 None:intergenic 20.0%
!! ATCGTAGTAAAAATAAATGT+AGG + chr1_4:36272087-36272106 None:intergenic 20.0%
!!! TACATTTATTTTTACTACGA+TGG - chr1_4:36272086-36272105 Msa0161330:CDS 20.0%
!!! TCATAAAATTCTGAAATTTC+AGG + chr1_4:36272127-36272146 None:intergenic 20.0%
!! TCCAAATTTCAAAGAAAAAA+TGG - chr1_4:36272159-36272178 Msa0161330:intron 20.0%
!!! ACCATTTTTTCTTTGAAATT+TGG + chr1_4:36272163-36272182 None:intergenic 20.0%
!! TATTTCAATTTAAAAGGCTT+TGG - chr1_4:36272463-36272482 Msa0161330:CDS 20.0%
!! ATTTGTGATTACTTAGAAAA+AGG - chr1_4:36272588-36272607 Msa0161330:intron 20.0%
!!! ATTACAATACCAGATATTTT+AGG - chr1_4:36272691-36272710 Msa0161330:intron 20.0%
!!! CATGTTTCAAATAAATGTTT+TGG - chr1_4:36272821-36272840 Msa0161330:intron 20.0%
!! TAAATTACATCTTAGGTTTA+GGG - chr1_4:36273033-36273052 Msa0161330:intron 20.0%
!! TCATTTAAAAGATTTGTGTA+AGG + chr1_4:36273765-36273784 None:intergenic 20.0%
!! TCATTTATAGTAAAGAAATG+TGG - chr1_4:36274022-36274041 Msa0161330:intron 20.0%
!! TCTCCATAGATATAAAAATT+TGG + chr1_4:36274193-36274212 None:intergenic 20.0%
!!! AATTTTTATATCTATGGAGA+AGG - chr1_4:36274193-36274212 Msa0161330:intron 20.0%
!! AATAACTACGACATTTAAAA+AGG - chr1_4:36274729-36274748 Msa0161330:intron 20.0%
!! ATAACTACGACATTTAAAAA+GGG - chr1_4:36274730-36274749 Msa0161330:intron 20.0%
!! AAGCTGAAAACATAAATATT+TGG + chr1_4:36274785-36274804 None:intergenic 20.0%
!! TGTAGAATAATAAAATTGCT+TGG - chr1_4:36274820-36274839 Msa0161330:intron 20.0%
!!! TTTGTTTGAAGTTGATAATT+GGG + chr1_4:36275227-36275246 None:intergenic 20.0%
!!! ATTTGTTTGAAGTTGATAAT+TGG + chr1_4:36275228-36275247 None:intergenic 20.0%
!!! TACTAGTGCTTATTTTATTT+TGG - chr1_4:36275473-36275492 Msa0161330:CDS 20.0%
!!! CTTATTTTATTTTGGAACTT+TGG - chr1_4:36275481-36275500 Msa0161330:CDS 20.0%
!!! TTTCTTGATGGATTAAAGTT+TGG - chr1_4:36271388-36271407 Msa0161330:three_prime_UTR 25.0%
!!! TTTTCTTTCTATAATGGGTA+TGG - chr1_4:36271791-36271810 Msa0161330:CDS 25.0%
! ATAGATTTCTTAGATGTTGT+TGG - chr1_4:36271949-36271968 Msa0161330:CDS 25.0%
! TCCTAATGTTCTTCTATTAT+TGG - chr1_4:36272020-36272039 Msa0161330:CDS 25.0%
! TCCAATAATAGAAGAACATT+AGG + chr1_4:36272024-36272043 None:intergenic 25.0%
!!! TCTTTGAAATTTGGAAAGAA+TGG + chr1_4:36272154-36272173 None:intergenic 25.0%
!! TAATAAATAACTTGCCATGT+GGG + chr1_4:36272237-36272256 None:intergenic 25.0%
!! TTAATAAATAACTTGCCATG+TGG + chr1_4:36272238-36272257 None:intergenic 25.0%
!!! CAACATCTTACACTTTTTTT+TGG + chr1_4:36272557-36272576 None:intergenic 25.0%
!! AAGTGTAAGATGTTGTTTAT+TGG - chr1_4:36272562-36272581 Msa0161330:intron 25.0%
!!! AGAAAGTGTAGATTTTGAAA+AGG - chr1_4:36272648-36272667 Msa0161330:intron 25.0%
! TTTGAAAAGGCAAATGTATT+TGG - chr1_4:36272661-36272680 Msa0161330:intron 25.0%
! ACAAAAGAAAAAAAAACGGA+GGG + chr1_4:36272762-36272781 None:intergenic 25.0%
! AACAAAAGAAAAAAAAACGG+AGG + chr1_4:36272763-36272782 None:intergenic 25.0%
!! TTTTGTATATTAAACCTTCG+AGG - chr1_4:36272948-36272967 Msa0161330:intron 25.0%
! GTAAATTACATCTTAGGTTT+AGG - chr1_4:36273032-36273051 Msa0161330:intron 25.0%
! AAGAAATGTGGAAATAATCT+TGG - chr1_4:36274034-36274053 Msa0161330:intron 25.0%
! ATTAAGAAATTGAAATGCAG+GGG + chr1_4:36274108-36274127 None:intergenic 25.0%
! CATTAAGAAATTGAAATGCA+GGG + chr1_4:36274109-36274128 None:intergenic 25.0%
! TCATTAAGAAATTGAAATGC+AGG + chr1_4:36274110-36274129 None:intergenic 25.0%
!! GAGCCAAATTTTTATATCTA+TGG - chr1_4:36274187-36274206 Msa0161330:intron 25.0%
!! TTTTTAAACTCAAACTGACT+TGG + chr1_4:36274251-36274270 None:intergenic 25.0%
! AAGGAATAATTTCTAACCAA+AGG + chr1_4:36274550-36274569 None:intergenic 25.0%
! AACACTTAAATGGTAACAAA+AGG + chr1_4:36274569-36274588 None:intergenic 25.0%
!! TTCATACCAAAAATTTTCTC+TGG - chr1_4:36274896-36274915 Msa0161330:intron 25.0%
!! TCATACCAAAAATTTTCTCT+GGG - chr1_4:36274897-36274916 Msa0161330:intron 25.0%
! TCATTGTAGTTATCCATTAT+TGG + chr1_4:36275065-36275084 None:intergenic 25.0%
!!! AACAACTTGTTGAATTTCAA+TGG - chr1_4:36275170-36275189 Msa0161330:intron 25.0%
! GTCATTTGTGAAATTATAAC+TGG - chr1_4:36275421-36275440 Msa0161330:CDS 25.0%
! ATTTGTGAAATTATAACTGG+TGG - chr1_4:36275424-36275443 Msa0161330:CDS 25.0%
CTTTAATCCATCAAGAAACT+CGG + chr1_4:36271386-36271405 None:intergenic 30.0%
TGGTCAAAAAATCTACTTTG+AGG - chr1_4:36271408-36271427 Msa0161330:three_prime_UTR 30.0%
TATTCATTCACCATTATACC+TGG - chr1_4:36272281-36272300 Msa0161330:intron 30.0%
TCTTAATGAAGGATAAGCAT+GGG - chr1_4:36272372-36272391 Msa0161330:intron 30.0%
! TTTAAAAGGCTTTGGTTGAT+TGG - chr1_4:36272471-36272490 Msa0161330:CDS 30.0%
AGTTGAAGTCCTAAAATATC+TGG + chr1_4:36272703-36272722 None:intergenic 30.0%
AGTAAGAGAGTGAAGTTTAT+TGG - chr1_4:36272906-36272925 Msa0161330:intron 30.0%
GATGTAATTTACACATCCTT+TGG + chr1_4:36273024-36273043 None:intergenic 30.0%
GGATGTGTAAATTACATCTT+AGG - chr1_4:36273026-36273045 Msa0161330:intron 30.0%
! GAAGATTTGCTTAATGTTGT+TGG - chr1_4:36273608-36273627 Msa0161330:intron 30.0%
AAACTTGAAATCCTTCATTG+TGG + chr1_4:36273650-36273669 None:intergenic 30.0%
!!! CAATGAAGGATTTCAAGTTT+TGG - chr1_4:36273650-36273669 Msa0161330:intron 30.0%
!!! TTCAAGTTTTGGTGCTTAAA+TGG - chr1_4:36273661-36273680 Msa0161330:intron 30.0%
CATTATGGATATGTCTACAA+CGG - chr1_4:36273914-36273933 Msa0161330:intron 30.0%
ATTATGGATATGTCTACAAC+GGG - chr1_4:36273915-36273934 Msa0161330:intron 30.0%
TAGCTTATCTCTATAAGCAT+TGG + chr1_4:36273955-36273974 None:intergenic 30.0%
GTTAATTTCTATGTGTGGAT+TGG + chr1_4:36274086-36274105 None:intergenic 30.0%
CTTATGAAAAAGTTAGACGT+AGG + chr1_4:36274138-36274157 None:intergenic 30.0%
!!! CTTTTTCATAAGCATCGATA+AGG - chr1_4:36274146-36274165 Msa0161330:intron 30.0%
TCTGTGTCAACAGATAATAA+TGG - chr1_4:36274843-36274862 Msa0161330:intron 30.0%
TCAACAGATAATAATGGCAA+AGG - chr1_4:36274849-36274868 Msa0161330:intron 30.0%
CAAAGGTAATAACTTTCTGA+TGG - chr1_4:36274866-36274885 Msa0161330:intron 30.0%
! CATTTCCCAGAGAAAATTTT+TGG + chr1_4:36274905-36274924 None:intergenic 30.0%
TTGTAGTTATCCATTATTGG+AGG + chr1_4:36275062-36275081 None:intergenic 30.0%
TTCAAACAAATGCTTCTTCT+TGG - chr1_4:36275237-36275256 Msa0161330:intron 30.0%
!! TGCTTCTTCTTGGTTTTTAA+AGG - chr1_4:36275247-36275266 Msa0161330:intron 30.0%
!! GCTTCTTCTTGGTTTTTAAA+GGG - chr1_4:36275248-36275267 Msa0161330:intron 30.0%
!! AGCAAACAAGAGTATTAAAG+TGG + chr1_4:36275401-36275420 None:intergenic 30.0%
GAAATTATAACTGGTGGTAT+TGG - chr1_4:36275430-36275449 Msa0161330:CDS 30.0%
AAGTTGAAACAAACAAAAGC+AGG + chr1_4:36275510-36275529 None:intergenic 30.0%
! TATCATTTTGTGGAACTTTG+AGG - chr1_4:36275544-36275563 Msa0161330:CDS 30.0%
!!! CTTTGAGGCATTATTTGTTT+TGG - chr1_4:36275559-36275578 Msa0161330:CDS 30.0%
CAAATCAAACCTAATGCTGT+TGG - chr1_4:36271463-36271482 Msa0161330:three_prime_UTR 35.0%
TCTTCATCATCTTCATCTTC+AGG - chr1_4:36271505-36271524 Msa0161330:three_prime_UTR 35.0%
TTCATCTTCAGGAATGAAGA+GGG - chr1_4:36271516-36271535 Msa0161330:three_prime_UTR 35.0%
AAACCAGAAACAACAACAGA+AGG + chr1_4:36271649-36271668 None:intergenic 35.0%
!! TTCTGTTGTTGTTTCTGGTT+TGG - chr1_4:36271648-36271667 Msa0161330:CDS 35.0%
!! TTTCTATAATGGGTATGGTC+TGG - chr1_4:36271796-36271815 Msa0161330:CDS 35.0%
ATGAGTTAGGCAAAACAAGA+AGG + chr1_4:36271834-36271853 None:intergenic 35.0%
GTTCTTCTATTATTGGAGAC+TGG - chr1_4:36272027-36272046 Msa0161330:CDS 35.0%
TTGACACATCAACTTCTCAA+GGG + chr1_4:36272188-36272207 None:intergenic 35.0%
ATTGACACATCAACTTCTCA+AGG + chr1_4:36272189-36272208 None:intergenic 35.0%
GTAGAAAAAATGATCCCACA+TGG - chr1_4:36272220-36272239 Msa0161330:intron 35.0%
TCACATGGCTAAAGCTAAAA+GGG + chr1_4:36272311-36272330 None:intergenic 35.0%
GTCTTAATGAAGGATAAGCA+TGG - chr1_4:36272371-36272390 Msa0161330:intron 35.0%
ATATTAAACCTTCGAGGCAT+AGG - chr1_4:36272954-36272973 Msa0161330:intron 35.0%
GTAATTTACACATCCTTTGG+TGG + chr1_4:36273021-36273040 None:intergenic 35.0%
!! CATCTTAGGTTTAGGGTTTT+TGG - chr1_4:36273040-36273059 Msa0161330:intron 35.0%
ACATCACTTGTGTGACATTA+TGG - chr1_4:36273285-36273304 Msa0161330:intron 35.0%
CATGAGAAAAACTACAAGAG+GGG + chr1_4:36273532-36273551 None:intergenic 35.0%
GCATGAGAAAAACTACAAGA+GGG + chr1_4:36273533-36273552 None:intergenic 35.0%
TGCATGAGAAAAACTACAAG+AGG + chr1_4:36273534-36273553 None:intergenic 35.0%
ATCCATAATGGTACCTATTG+AGG + chr1_4:36273904-36273923 None:intergenic 35.0%
CGTTGTAGACATATCCATAA+TGG + chr1_4:36273916-36273935 None:intergenic 35.0%
TTATGGATATGTCTACAACG+GGG - chr1_4:36273916-36273935 Msa0161330:intron 35.0%
!! TATAAGCATTGGTACCTCAT+AGG + chr1_4:36273944-36273963 None:intergenic 35.0%
!!! ATAAGCATCGATAAGGCTTT+TGG - chr1_4:36274153-36274172 Msa0161330:intron 35.0%
! GAGAAGGTCTTATGAATTAG+AGG - chr1_4:36274209-36274228 Msa0161330:intron 35.0%
TTGAGATAAAAACGATCCCA+CGG + chr1_4:36274358-36274377 None:intergenic 35.0%
AGCTTCCTGAATTTGATCAA+GGG - chr1_4:36274421-36274440 Msa0161330:intron 35.0%
TTTCTAACCAAAGGTAGAAG+AGG + chr1_4:36274541-36274560 None:intergenic 35.0%
CTCAAACAACACAATTTACC+TGG - chr1_4:36274964-36274983 Msa0161330:intron 35.0%
ATTATTGGAGGATGTCTAGT+AGG + chr1_4:36275050-36275069 None:intergenic 35.0%
TACTAGACATCCTCCAATAA+TGG - chr1_4:36275049-36275068 Msa0161330:intron 35.0%
!! TGTTTCTAGAGTACCATGTT+TGG + chr1_4:36275127-36275146 None:intergenic 35.0%
AAGTTGTTCATCTCAACACT+TGG + chr1_4:36275158-36275177 None:intergenic 35.0%
AGTATTAAAGTGGCCAGTAA+TGG + chr1_4:36275391-36275410 None:intergenic 35.0%
GTTTGTTTCAACTTATGAGC+AGG - chr1_4:36275516-36275535 Msa0161330:CDS 35.0%
! GCAGGATCTTTATCATTTTG+TGG - chr1_4:36275534-36275553 Msa0161330:CDS 35.0%
! GATGAGTTAGGTTGTGAAGA+GGG + chr1_4:36271361-36271380 None:intergenic 40.0%
! AGATGAGTTAGGTTGTGAAG+AGG + chr1_4:36271362-36271381 None:intergenic 40.0%
AGAAACTCGGTAGATGAGTT+AGG + chr1_4:36271373-36271392 None:intergenic 40.0%
TCATCTACCGAGTTTCTTGA+TGG - chr1_4:36271376-36271395 Msa0161330:three_prime_UTR 40.0%
AAACCTAATGCTGTTGGTGT+TGG - chr1_4:36271469-36271488 Msa0161330:three_prime_UTR 40.0%
CTTCATCTTCAGGAATGAAG+AGG - chr1_4:36271515-36271534 Msa0161330:three_prime_UTR 40.0%
TCATCTTCAGGAATGAAGAG+GGG - chr1_4:36271517-36271536 Msa0161330:three_prime_UTR 40.0%
GCTTGTAAAGTAGATCTGAG+TGG - chr1_4:36271571-36271590 Msa0161330:CDS 40.0%
!! TCTCCTTCTGTTGTTGTTTC+TGG - chr1_4:36271643-36271662 Msa0161330:CDS 40.0%
!! TTGTTTCTGGTTTGGAGCAA+AGG - chr1_4:36271656-36271675 Msa0161330:CDS 40.0%
TGACACATCAACTTCTCAAG+GGG + chr1_4:36272187-36272206 None:intergenic 40.0%
AAAGGGTCTTCCAGGTATAA+TGG + chr1_4:36272294-36272313 None:intergenic 40.0%
TAAAGCTAAAAGGGTCTTCC+AGG + chr1_4:36272302-36272321 None:intergenic 40.0%
GTCACATGGCTAAAGCTAAA+AGG + chr1_4:36272312-36272331 None:intergenic 40.0%
TGTCCTACTGGTAAAAGAAG+TGG - chr1_4:36272333-36272352 Msa0161330:intron 40.0%
GTCCTACTGGTAAAAGAAGT+GGG - chr1_4:36272334-36272353 Msa0161330:intron 40.0%
! TACCCACTTCTTTTACCAGT+AGG + chr1_4:36272339-36272358 None:intergenic 40.0%
TAAAAGAAGTGGGTAGTGAG+AGG - chr1_4:36272344-36272363 Msa0161330:intron 40.0%
AAAAGAAGTGGGTAGTGAGA+GGG - chr1_4:36272345-36272364 Msa0161330:intron 40.0%
!! GAGAGGGTTAGTCTTAATGA+AGG - chr1_4:36272361-36272380 Msa0161330:intron 40.0%
!!! TTTAGGGTTTTTGGTTGCTC+TGG - chr1_4:36273049-36273068 Msa0161330:intron 40.0%
!!! TTAGGGTTTTTGGTTGCTCT+GGG - chr1_4:36273050-36273069 Msa0161330:intron 40.0%
! TATTCCCTCTTTGGAGAGTT+AGG - chr1_4:36273139-36273158 Msa0161330:intron 40.0%
CAAACCTAACTCTCCAAAGA+GGG + chr1_4:36273146-36273165 None:intergenic 40.0%
! CTCTTTGGAGAGTTAGGTTT+GGG - chr1_4:36273145-36273164 Msa0161330:intron 40.0%
! CCTGTTGTTGCAAGCATTTT+GGG - chr1_4:36273228-36273247 Msa0161330:intron 40.0%
! CTGTTGTTGCAAGCATTTTG+GGG - chr1_4:36273229-36273248 Msa0161330:intron 40.0%
! TGTTGTTGCAAGCATTTTGG+GGG - chr1_4:36273230-36273249 Msa0161330:intron 40.0%
!! AAGCATTTTGGGGGTTTCTT+TGG - chr1_4:36273239-36273258 Msa0161330:intron 40.0%
!! AGCATTTTGGGGGTTTCTTT+GGG - chr1_4:36273240-36273259 Msa0161330:intron 40.0%
GTGTCAATGTCATGTCACAT+TGG + chr1_4:36273436-36273455 None:intergenic 40.0%
TGACACTACAATGTCAACCA+AGG - chr1_4:36273450-36273469 Msa0161330:intron 40.0%
CGAAAACAACAGACAAACCT+TGG + chr1_4:36273470-36273489 None:intergenic 40.0%
!!! GGTTTGTCTGTTGTTTTCGT+TGG - chr1_4:36273471-36273490 Msa0161330:intron 40.0%
GTGCTTAAATGGATCATACG+CGG - chr1_4:36273672-36273691 Msa0161330:intron 40.0%
TATGAGATCCTCTCCTCAAT+AGG - chr1_4:36273888-36273907 Msa0161330:intron 40.0%
TAATGGTACCTATTGAGGAG+AGG + chr1_4:36273899-36273918 None:intergenic 40.0%
CTCCTCAATAGGTACCATTA+TGG - chr1_4:36273899-36273918 Msa0161330:intron 40.0%
TAGAGATAAGCTAACCCCAT+TGG - chr1_4:36273962-36273981 Msa0161330:intron 40.0%
AGAGATAAGCTAACCCCATT+GGG - chr1_4:36273963-36273982 Msa0161330:intron 40.0%
CAGGGGTTAATTTCTATGTG+TGG + chr1_4:36274091-36274110 None:intergenic 40.0%
CTGTGCAAGTTCTATCAAAG+AGG + chr1_4:36274393-36274412 None:intergenic 40.0%
CTCTTTGATAGAACTTGCAC+AGG - chr1_4:36274391-36274410 Msa0161330:intron 40.0%
CAGCTTCCTGAATTTGATCA+AGG - chr1_4:36274420-36274439 Msa0161330:intron 40.0%
CGTTTCCCTTGATCAAATTC+AGG + chr1_4:36274429-36274448 None:intergenic 40.0%
AAGGTAGAAGAGGAGAGTTT+GGG + chr1_4:36274531-36274550 None:intergenic 40.0%
AAAGGTAGAAGAGGAGAGTT+TGG + chr1_4:36274532-36274551 None:intergenic 40.0%
AAACTCTCCTCTTCTACCTT+TGG - chr1_4:36274531-36274550 Msa0161330:intron 40.0%
CGACATTTAAAAAGGGACGA+AGG - chr1_4:36274737-36274756 Msa0161330:intron 40.0%
!! AATTGTGTTGTTTGAGCGCT+GGG + chr1_4:36274960-36274979 None:intergenic 40.0%
!! AAATTGTGTTGTTTGAGCGC+TGG + chr1_4:36274961-36274980 None:intergenic 40.0%
CCTTGTAGGATAAAATCCGA+TGG + chr1_4:36275008-36275027 None:intergenic 40.0%
! CCATCGGATTTTATCCTACA+AGG - chr1_4:36275005-36275024 Msa0161330:intron 40.0%
! CATGGAAGTTTGTTCCTTGT+AGG + chr1_4:36275022-36275041 None:intergenic 40.0%
CTACAAGGAACAAACTTCCA+TGG - chr1_4:36275020-36275039 Msa0161330:intron 40.0%
CTCTTCTGTCAAACCAAACA+TGG - chr1_4:36275111-36275130 Msa0161330:intron 40.0%
TTTGGCCTATGTGAACAATG+TGG - chr1_4:36275577-36275596 Msa0161330:CDS 40.0%
TTGGCCTATGTGAACAATGT+GGG - chr1_4:36275578-36275597 Msa0161330:CDS 40.0%
TCAACCCACATTGTTCACAT+AGG + chr1_4:36275585-36275604 None:intergenic 40.0%
! TTAGGTTGTGAAGAGGGAGA+AGG + chr1_4:36271355-36271374 None:intergenic 45.0%
GGGGAAATAATCATCCACGT+AGG - chr1_4:36271536-36271555 Msa0161330:three_prime_UTR 45.0%
! AGTAGATCTGAGTGGTGCTA+AGG - chr1_4:36271579-36271598 Msa0161330:CDS 45.0%
GACACATCAACTTCTCAAGG+GGG + chr1_4:36272186-36272205 None:intergenic 45.0%
TACCAGTAGGACATGTCACA+TGG + chr1_4:36272326-36272345 None:intergenic 45.0%
CAATGCATGAACACCACCAA+AGG - chr1_4:36273005-36273024 Msa0161330:intron 45.0%
!!! AGTTCTCTCTCTGGCTTTTC+AGG - chr1_4:36273110-36273129 Msa0161330:intron 45.0%
!!! GTTCTCTCTCTGGCTTTTCA+GGG - chr1_4:36273111-36273130 Msa0161330:intron 45.0%
CCAAACCTAACTCTCCAAAG+AGG + chr1_4:36273147-36273166 None:intergenic 45.0%
! CCTCTTTGGAGAGTTAGGTT+TGG - chr1_4:36273144-36273163 Msa0161330:intron 45.0%
! GTTAGGTTTGGGTTCTTTGC+TGG - chr1_4:36273156-36273175 Msa0161330:intron 45.0%
! GCCTGTTGTTGCAAGCATTT+TGG - chr1_4:36273227-36273246 Msa0161330:intron 45.0%
CCCAAAATGCTTGCAACAAC+AGG + chr1_4:36273231-36273250 None:intergenic 45.0%
GTCACGTGACACACTATGAT+TGG + chr1_4:36273333-36273352 None:intergenic 45.0%
GAAAACCAGATGTCACGTTG+TGG - chr1_4:36273406-36273425 Msa0161330:intron 45.0%
!! ACCAAGAGCATCCACAATGA+AGG - chr1_4:36273636-36273655 Msa0161330:intron 45.0%
TCCTTCATTGTGGATGCTCT+TGG + chr1_4:36273640-36273659 None:intergenic 45.0%
TATGGGACCAACAAAGAGAG+AGG - chr1_4:36273858-36273877 Msa0161330:intron 45.0%
ATGGGACCAACAAAGAGAGA+GGG - chr1_4:36273859-36273878 Msa0161330:intron 45.0%
TAAGCACCCTCTCTCTTTGT+TGG + chr1_4:36273868-36273887 None:intergenic 45.0%
GAGATAAGCTAACCCCATTG+GGG - chr1_4:36273964-36273983 Msa0161330:intron 45.0%
!! GACTTGGCTCTGGTTCAAAT+TGG + chr1_4:36274235-36274254 None:intergenic 45.0%
!! AACTCAAACTGACTTGGCTC+TGG + chr1_4:36274245-36274264 None:intergenic 45.0%
ACCACACTGTTACATAACCG+TGG - chr1_4:36274338-36274357 Msa0161330:intron 45.0%
CCACACTGTTACATAACCGT+GGG - chr1_4:36274339-36274358 Msa0161330:intron 45.0%
! GACTAGCTGGCCATAATGAA+AGG - chr1_4:36274463-36274482 Msa0161330:intron 45.0%
TAGCTGGCCATAATGAAAGG+CGG - chr1_4:36274466-36274485 Msa0161330:intron 45.0%
GCTTTCTCCGCCTTTCATTA+TGG + chr1_4:36274476-36274495 None:intergenic 45.0%
GTTAAAAAGGAGCTCGGTTG+GGG + chr1_4:36274498-36274517 None:intergenic 45.0%
GGTTAAAAAGGAGCTCGGTT+GGG + chr1_4:36274499-36274518 None:intergenic 45.0%
AGGTTAAAAAGGAGCTCGGT+TGG + chr1_4:36274500-36274519 None:intergenic 45.0%
GGGAAAACGCGAGGTTAAAA+AGG + chr1_4:36274511-36274530 None:intergenic 45.0%
GAACAACTCATCGACACCAT+CGG - chr1_4:36274989-36275008 Msa0161330:intron 45.0%
ATTGGAGGATGTCTAGTAGG+AGG + chr1_4:36275047-36275066 None:intergenic 45.0%
ACCAAGATCAGGAACATCCT+CGG + chr1_4:36275300-36275319 None:intergenic 45.0%
GATGTTCCTGATCTTGGTCT+CGG - chr1_4:36275302-36275321 Msa0161330:CDS 45.0%
! TTTTGACCGAGACCAAGATC+AGG + chr1_4:36275311-36275330 None:intergenic 45.0%
GCTATTCATAGCGATCTTCG+TGG - chr1_4:36275338-36275357 Msa0161330:CDS 45.0%
CACAAGGCAAGAACCATTAC+TGG - chr1_4:36275375-36275394 Msa0161330:CDS 45.0%
!! AAATATCTTTAAATTTAAAT+TGG + chr1_4:36272531-36272550 None:intergenic 5.0%
CCACCAACACCAACAGCATT+AGG + chr1_4:36271475-36271494 None:intergenic 50.0%
!! CCTAATGCTGTTGGTGTTGG+TGG - chr1_4:36271472-36271491 Msa0161330:three_prime_UTR 50.0%
GCTTCAACTTGACACCTACG+TGG + chr1_4:36271553-36271572 None:intergenic 50.0%
! GGTTTTGCCAACAGTGTAGC+AGG - chr1_4:36271677-36271696 Msa0161330:CDS 50.0%
CATGTGACCTGCTACACTGT+TGG + chr1_4:36271687-36271706 None:intergenic 50.0%
AGCCATGTGACATGTCCTAC+TGG - chr1_4:36272321-36272340 Msa0161330:intron 50.0%
CAGCAAAACCTATGCCTCGA+AGG + chr1_4:36272965-36272984 None:intergenic 50.0%
! CTTCGAGGCATAGGTTTTGC+TGG - chr1_4:36272963-36272982 Msa0161330:intron 50.0%
AGAGAACTCCACCAGGAGAA+CGG + chr1_4:36273098-36273117 None:intergenic 50.0%
!!! TCTCTCTGGCTTTTCAGGGT+GGG - chr1_4:36273115-36273134 Msa0161330:intron 50.0%
!! TTGGGTTCTTTGCTGGCCTT+TGG - chr1_4:36273163-36273182 Msa0161330:intron 50.0%
!! TGGGTTCTTTGCTGGCCTTT+GGG - chr1_4:36273164-36273183 Msa0161330:intron 50.0%
TAAGCAAACACGACCCCCAA+AGG + chr1_4:36273182-36273201 None:intergenic 50.0%
TTTGGGGGTCGTGTTTGCTT+AGG - chr1_4:36273181-36273200 Msa0161330:intron 50.0%
GTCAACCACAACGTGACATC+TGG + chr1_4:36273414-36273433 None:intergenic 50.0%
! TTGTTTTCGTTGGCCATCGC+TGG - chr1_4:36273481-36273500 Msa0161330:intron 50.0%
! TCTACAACGGGGTACCTATG+AGG - chr1_4:36273927-36273946 Msa0161330:intron 50.0%
TAAGCTAACCCCATTGGGGA+TGG - chr1_4:36273968-36273987 Msa0161330:intron 50.0%
CTCTTAGACCATCCCCAATG+GGG + chr1_4:36273979-36273998 None:intergenic 50.0%
GCTCTTAGACCATCCCCAAT+GGG + chr1_4:36273980-36273999 None:intergenic 50.0%
AGCTCTTAGACCATCCCCAA+TGG + chr1_4:36273981-36274000 None:intergenic 50.0%
CCCACGGTTATGTAACAGTG+TGG + chr1_4:36274342-36274361 None:intergenic 50.0%
CGCGAGGTTAAAAAGGAGCT+CGG + chr1_4:36274504-36274523 None:intergenic 50.0%
TGTCGATGAGTTGTTCTGCC+AGG + chr1_4:36274985-36275004 None:intergenic 50.0%
GATGTCTAGTAGGAGGACCA+TGG + chr1_4:36275040-36275059 None:intergenic 50.0%
CCAAGATCAGGAACATCCTC+GGG + chr1_4:36275299-36275318 None:intergenic 50.0%
TGGTCTCGGTCAAAATTCGC+AGG - chr1_4:36275316-36275335 Msa0161330:CDS 50.0%
TCATAGCGATCTTCGTGGTG+AGG - chr1_4:36275343-36275362 Msa0161330:CDS 50.0%
GGTGAGGTCAACGTTTCACA+AGG - chr1_4:36275359-36275378 Msa0161330:CDS 50.0%
!!! GGGTTTTTGGTTGCTCTGGG+CGG - chr1_4:36273053-36273072 Msa0161330:intron 55.0%
TCCTGGTGGAGTTCTCTCTC+TGG - chr1_4:36273101-36273120 Msa0161330:intron 55.0%
!!! CTCTCTCTGGCTTTTCAGGG+TGG - chr1_4:36273114-36273133 Msa0161330:intron 55.0%
!!! CTCTCTGGCTTTTCAGGGTG+GGG - chr1_4:36273116-36273135 Msa0161330:intron 55.0%
! AGGGTGGGGTATTCCCTCTT+TGG - chr1_4:36273130-36273149 Msa0161330:intron 55.0%
!! GGGTTCTTTGCTGGCCTTTG+GGG - chr1_4:36273165-36273184 Msa0161330:intron 55.0%
!! GGTTCTTTGCTGGCCTTTGG+GGG - chr1_4:36273166-36273185 Msa0161330:intron 55.0%
GGGGCATGCAATACCAAGCA+GGG + chr1_4:36273513-36273532 None:intergenic 55.0%
! AGGGGCATGCAATACCAAGC+AGG + chr1_4:36273514-36273533 None:intergenic 55.0%
AAGGGAAACGAAGTTGCCGC+AGG - chr1_4:36274439-36274458 Msa0161330:intron 55.0%
GGAGAGTTTGGGAAAACGCG+AGG + chr1_4:36274520-36274539 None:intergenic 55.0%
AATTCCGAGATCAGCCGAGC+CGG - chr1_4:36274932-36274951 Msa0161330:intron 55.0%
!! GTTGTTTGAGCGCTGGGAAC+CGG + chr1_4:36274954-36274973 None:intergenic 55.0%
TCGTAACTGTTTGTCGCCCG+AGG - chr1_4:36275280-36275299 Msa0161330:intron 55.0%
CCCGAGGATGTTCCTGATCT+TGG - chr1_4:36275296-36275315 Msa0161330:CDS 55.0%
CTTGTCCTCAGCCGTTCTCC+TGG - chr1_4:36273084-36273103 Msa0161330:intron 60.0%
GCCAGAGAGAGAACTCCACC+AGG + chr1_4:36273105-36273124 None:intergenic 60.0%
!! AGCAGGGAAAGCACCAGCGA+TGG + chr1_4:36273497-36273516 None:intergenic 60.0%
TCGCTGGTGCTTTCCCTGCT+TGG - chr1_4:36273497-36273516 Msa0161330:intron 60.0%
TATGGCCAGCTAGTCGCCTG+CGG + chr1_4:36274458-36274477 None:intergenic 60.0%
GTCCTCAGCCGTTCTCCTGG+TGG - chr1_4:36273087-36273106 Msa0161330:intron 65.0%
CTCCACCAGGAGAACGGCTG+AGG + chr1_4:36273092-36273111 None:intergenic 65.0%
AGTTGCCGCAGGCGACTAGC+TGG - chr1_4:36274450-36274469 Msa0161330:intron 65.0%
!! GGAACCGGCTCGGCTGATCT+CGG + chr1_4:36274939-36274958 None:intergenic 65.0%
!! TTGAGCGCTGGGAACCGGCT+CGG + chr1_4:36274949-36274968 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 36271334 36275632 36271334 ID=Msa0161330;Name=Msa0161330
chr1_4 mRNA 36271334 36275632 36271334 ID=Msa0161330-mRNA-1;Parent=Msa0161330;Name=Msa0161330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.66|1|1|1|3|226|344
chr1_4 exon 36271334 36272110 36271334 ID=Msa0161330-mRNA-1:exon:10768;Parent=Msa0161330-mRNA-1
chr1_4 exon 36272414 36272553 36272414 ID=Msa0161330-mRNA-1:exon:10767;Parent=Msa0161330-mRNA-1
chr1_4 exon 36275289 36275632 36275289 ID=Msa0161330-mRNA-1:exon:10766;Parent=Msa0161330-mRNA-1
chr1_4 CDS 36275289 36275632 36275289 ID=Msa0161330-mRNA-1:cds;Parent=Msa0161330-mRNA-1
chr1_4 CDS 36272414 36272553 36272414 ID=Msa0161330-mRNA-1:cds;Parent=Msa0161330-mRNA-1
chr1_4 CDS 36271560 36272110 36271560 ID=Msa0161330-mRNA-1:cds;Parent=Msa0161330-mRNA-1
chr1_4 three_prime_UTR 36271334 36271559 36271334 ID=Msa0161330-mRNA-1:three_prime_utr;Parent=Msa0161330-mRNA-1
Gene Sequence

>Msa0161330

ATGAGTTCAGGTTTTGTACCTTCTCCCTCTTCACAACCTAACTCATCTACCGAGTTTCTTGATGGATTAAAGTTTGGTCAAAAAATCTACTTTGAGGATGCAACAAGTACTGTTGTAGTAGCAGCTTCTCAAATCAAACCTAATGCTGTTGGTGTTGGTGGCTCTTCTTCTTCTTCATCATCTTCATCTTCAGGAATGAAGAGGGGAAATAATCATCCACGTAGGTGTCAAGTTGAAGCTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCTTCTGTTGTTGTTTCTGGTTTGGAGCAAAGGTTTCATCAGCTTCCTGAATTTGATCAAGGGAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAAAGGCGGAGAAAGCCCCAACCGAGCTCCTTTTTAACCTCGCGTTTTCCCAAACTCTCCTCTTCTACCTTTGATAATAATGGCAAAGGTAATAACTTTCTGATGGAATGTGCTTCATACCAAAAATTTTCTCTGGGAAATGCATTATCAATTCCGAGATCAGCCGAGCCGGTTCCCAGCGCTCAAACAACACAATTTACCTGGCAGAACAACTCATCGACACCATCGGATTTTATCCTACAAGGAACAAACTTCCATGGTCCTCCTACTAGACATCCTCCAATAATGGATAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTACTCTAGAAACACAACAACACCAAGTGTTGAGATGAACAACTTGTTGAATTTCAATGGTTCACTCACTACACAATCTTCTCAAGTTGCACCCAATTATCAACTTCAAACAAATGCTTCTTCTTGGTTTTTAAAGGGCGTTGATTCTCGTAACTGTTTGTCGCCCGAGGATGTTCCTGATCTTGGTCTCGGTCAAAATTCGCAGGCTATTCATAGCGATCTTCGTGGTGAGGTCAACGTTTCACAAGGCAAGAACCATTACTGGCCACTTTAA
Protein sequence

>Msa0161330

MSSGFVPSPSSQPNSSTEFLDGLKFGQKIYFEDATSTVVVAASQIKPNAVGVGGSSSSSSSSSSGMKRGNNHPRRCQVEACKVDLSGAKAYYSRHKVCCMHSKSPSVVVSGLEQRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSFLTSRFPKLSSSTFDNNGKGNNFLMECASYQKFSLGNALSIPRSAEPVPSAQTTQFTWQNNSSTPSDFILQGTNFHGPPTRHPPIMDNYNEVTDSSCALSLLSNQTWYSRNTTTPSVEMNNLLNFNGSLTTQSSQVAPNYQLQTNASSWFLKGVDSRNCLSPEDVPDLGLGQNSQAIHSDLRGEVNVSQGKNHYWPL*