AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0161340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0161340 MtrunA17_Chr1g0175071 85.404 322 20 3 1 297 1 320 0.0 534
Msa0161340 MtrunA17_Chr7g0258531 41.241 274 110 9 53 290 90 348 3.76e-46 159
Msa0161340 MtrunA17_Chr1g0175091 47.407 135 53 3 167 284 254 387 2.61e-26 107
Msa0161340 MtrunA17_Chr7g0258551 45.802 131 54 2 171 284 212 342 1.03e-24 102
Msa0161340 MtrunA17_Chr7g0261911 41.045 134 61 2 167 282 258 391 1.12e-23 100
Msa0161340 MtrunA17_Chr2g0291021 43.284 134 56 3 171 284 49 182 1.14e-23 98.6
Msa0161340 MtrunA17_Chr1g0190301 33.953 215 119 5 91 284 94 306 1.14e-22 96.7
Msa0161340 MtrunA17_Chr7g0254981 34.783 138 69 2 168 284 47 184 7.78e-20 87.0
Msa0161340 MtrunA17_Chr7g0274471 38.636 132 63 2 171 284 218 349 9.01e-20 89.0
Msa0161340 MtrunA17_Chr8g0356501 35.811 148 74 3 166 292 32 179 4.80e-18 83.2
Msa0161340 MtrunA17_Chr6g0461641 35.294 153 65 4 166 284 37 189 1.64e-17 82.0
Msa0161340 MtrunA17_Chr2g0310011 37.121 132 62 3 166 276 30 161 2.07e-17 81.3
Msa0161340 MtrunA17_Chr5g0417521 32.192 146 69 3 164 279 8 153 5.09e-15 74.3
Msa0161340 MtrunA17_Chr4g0042451 32.867 143 67 3 166 279 12 154 2.36e-14 72.4
Msa0161340 MtrunA17_Chr5g0409731 31.098 164 83 2 161 294 15 178 3.84e-14 71.2
Msa0161340 MtrunA17_Chr7g0242521 35.000 140 71 3 167 286 9 148 1.74e-12 65.9
Msa0161340 MtrunA17_Chr1g0197171 31.034 145 79 5 157 284 33 173 7.19e-12 64.7
Msa0161340 MtrunA17_Chr2g0290991 48.438 64 30 1 154 217 25 85 7.61e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0161340 AT5G06800.1 40.719 167 77 4 140 284 156 322 2.51e-27 109
Msa0161340 AT5G06800.2 38.372 172 79 3 140 284 156 327 6.76e-26 105
Msa0161340 AT2G01060.1 43.609 133 56 3 171 284 15 147 1.42e-23 97.8
Msa0161340 AT4G28610.1 41.045 134 60 2 168 282 222 355 1.61e-22 97.1
Msa0161340 AT5G29000.2 38.129 139 65 3 167 284 227 365 6.08e-21 92.4
Msa0161340 AT5G29000.1 38.129 139 65 3 167 284 184 322 8.54e-21 91.7
Msa0161340 AT5G29000.3 38.129 139 65 3 167 284 184 322 8.54e-21 91.7
Msa0161340 AT3G04450.1 35.461 141 70 2 171 290 238 378 2.75e-20 90.9
Msa0161340 AT3G04450.4 35.461 141 70 2 171 290 198 338 3.56e-20 90.1
Msa0161340 AT3G04450.2 35.461 141 70 2 171 290 198 338 3.56e-20 90.1
Msa0161340 AT3G13040.3 38.298 141 64 3 167 284 237 377 6.97e-19 86.7
Msa0161340 AT3G13040.1 38.298 141 64 3 167 284 237 377 6.97e-19 86.7
Msa0161340 AT3G13040.2 38.298 141 64 3 167 284 237 377 6.97e-19 86.7
Msa0161340 AT3G04030.3 33.750 160 73 3 155 281 29 188 9.48e-19 85.9
Msa0161340 AT5G18240.1 33.557 149 66 3 166 281 40 188 2.31e-17 82.0
Msa0161340 AT5G18240.4 33.557 149 66 3 166 281 40 188 2.31e-17 82.0
Msa0161340 AT4G13640.1 32.544 169 84 3 154 292 20 188 4.01e-17 80.1
Msa0161340 AT1G79430.2 35.374 147 74 3 166 291 29 175 4.26e-17 80.9
Msa0161340 AT3G24120.1 33.136 169 83 3 154 292 24 192 8.61e-17 79.3
Msa0161340 AT3G04030.2 32.500 160 74 4 155 281 29 187 6.25e-16 77.8
Msa0161340 AT2G20400.1 36.154 130 65 2 171 282 231 360 2.53e-15 76.3
Msa0161340 AT4G13640.2 31.977 172 84 4 154 292 20 191 3.19e-15 74.7
Msa0161340 AT2G20400.2 36.641 131 64 2 171 282 231 361 5.29e-15 75.1
Msa0161340 AT5G18240.5 32.886 149 65 4 166 281 40 186 6.43e-15 74.7
Msa0161340 AT3G24120.2 32.558 172 83 4 154 292 24 195 6.73e-15 73.9
Msa0161340 AT3G04030.1 30.625 160 72 4 155 281 29 182 4.16e-14 72.4
Msa0161340 AT1G69580.1 32.450 151 63 3 166 279 29 177 1.16e-13 70.9
Msa0161340 AT1G69580.2 31.579 152 64 3 166 279 29 178 3.95e-13 69.3
Msa0161340 AT5G18240.2 32.593 135 75 4 166 284 40 174 5.07e-13 69.3
Msa0161340 AT5G18240.3 32.593 135 75 4 166 284 40 174 5.07e-13 69.3
Msa0161340 AT3G12730.1 55.769 52 23 0 166 217 18 69 2.28e-12 65.9
Msa0161340 AT5G29000.4 54.902 51 23 0 167 217 227 277 9.90e-12 65.1
Msa0161340 AT5G06800.3 37.000 100 58 1 139 233 155 254 1.84e-11 63.9
Msa0161340 AT4G04605.1 43.210 81 34 1 173 253 16 84 2.92e-11 62.4
Msa0161340 AT3G04450.3 53.191 47 22 0 171 217 238 284 9.07e-11 62.0

Find 51 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAACAACCTGCTTCAAAT+TGG 0.204478 1_4:-36551516 Msa0161340:CDS
ATGAATTTGACATACCTATT+TGG 0.267271 1_4:-36551637 Msa0161340:CDS
CAGCCTTGACAATACATAAA+AGG 0.269493 1_4:+36551578 None:intergenic
GTGATTCTTCTATTTGCATT+TGG 0.336254 1_4:+36549102 None:intergenic
ATTTCATGGGACCTCTGATC+TGG 0.337576 1_4:+36551386 None:intergenic
TTCCCTCTTGTTCTAATAAG+AGG 0.359635 1_4:-36551430 Msa0161340:CDS
CTAAAATGTACATAAATCAT+TGG 0.360570 1_4:-36551787 None:intergenic
ATTATATAAACTTACTTTCT+GGG 0.366001 1_4:+36550314 None:intergenic
GAAAATTCATTGCTCCAAAT+AGG 0.375788 1_4:+36551623 None:intergenic
CCAACAACCTGCTTCAAATT+GGG 0.382315 1_4:-36551515 Msa0161340:CDS
CCCAATTTGAAGCAGGTTGT+TGG 0.384228 1_4:+36551515 None:intergenic
GGTTGTTGGTTGATCTTGTT+TGG 0.395689 1_4:+36551529 None:intergenic
TAAAATGTACATAAATCATT+GGG 0.405097 1_4:-36551786 None:intergenic
TTGATCTTGAAAATTCATAA+AGG 0.413952 1_4:+36551673 None:intergenic
GACATATCAGCAATCATTCA+TGG 0.436755 1_4:-36551713 Msa0161340:CDS
ACAAAAGAAAAGAACCAAAC+AGG 0.442809 1_4:-36548833 Msa0161340:CDS
ATCATTTGTAGTATAGCCTT+AGG 0.450838 1_4:+36550207 None:intergenic
TAAGGCTATACTACAAATGA+TGG 0.452684 1_4:-36550205 Msa0161340:CDS
TTTCATGGGACCTCTGATCT+GGG 0.460927 1_4:+36551387 None:intergenic
TTCAGAACCCAATTTGAAGC+AGG 0.463730 1_4:+36551508 None:intergenic
TACTTTCTGGGCCACCAAGC+TGG 0.476548 1_4:+36550326 None:intergenic
ATTATTATTGTCAACCAGCT+TGG 0.483051 1_4:-36550340 Msa0161340:CDS
TTGTTCTAATAAGAGGGTGC+TGG 0.513933 1_4:-36551423 Msa0161340:CDS
TCCCTCTTGTTCTAATAAGA+GGG 0.514383 1_4:-36551429 Msa0161340:CDS
GATGCAGCGAAATTTGCAAC+TGG 0.519384 1_4:-36548899 Msa0161340:CDS
ATTATTGTCAACCAGCTTGG+TGG 0.523219 1_4:-36550337 Msa0161340:CDS
TTTCTGAAAGGAAATTTCAT+GGG 0.532722 1_4:+36551373 None:intergenic
AGGGTAAAAGAAGATTAAGA+TGG 0.538823 1_4:-36550387 Msa0161340:CDS
GAGGAAGGGCAGATAACAGA+TGG 0.546455 1_4:-36549257 Msa0161340:CDS
GAGCAATAAACGACAATTCG+AGG 0.546674 1_4:-36549054 Msa0161340:intron
CACCCTCTTATTAGAACAAG+AGG 0.558672 1_4:+36551427 None:intergenic
AAAGGTGAATCTGTTGTTGT+TGG 0.559028 1_4:+36551596 None:intergenic
TTAATCAGAGGCAAAGCCTA+AGG 0.566249 1_4:-36550223 Msa0161340:intron
AACTACAACTTGAGGTTGAG+AGG 0.574473 1_4:-36549076 Msa0161340:CDS
AGAGGACTAACTATGCTACA+AGG 0.576073 1_4:+36551740 None:intergenic
GTTTCAGGAATATCTGAGGA+AGG 0.576924 1_4:-36549272 Msa0161340:intron
AATTTCCTTTCAGAAAACTC+AGG 0.594791 1_4:-36551366 Msa0161340:intron
GACAAACAATCTTCACCTTG+TGG 0.605075 1_4:-36550433 Msa0161340:CDS
AAGGCTATACTACAAATGAT+GGG 0.610409 1_4:-36550204 Msa0161340:CDS
ATTGCTGATATGTCCTCTAG+AGG 0.610808 1_4:+36551722 None:intergenic
GTATGTCAAATTCATGCTGA+TGG 0.622104 1_4:+36551645 None:intergenic
TAGCATAGTTAGTCCTCTAG+AGG 0.629733 1_4:-36551735 Msa0161340:CDS
TTTCAGGAATATCTGAGGAA+GGG 0.636689 1_4:-36549271 Msa0161340:intron
TTGTGTTTCAGGAATATCTG+AGG 0.637900 1_4:-36549276 Msa0161340:intron
ATCACGACAACTACAACTTG+AGG 0.638258 1_4:-36549084 Msa0161340:CDS
TTCATGGGACCTCTGATCTG+GGG 0.643024 1_4:+36551388 None:intergenic
GAGGACTAACTATGCTACAA+GGG 0.646307 1_4:+36551741 None:intergenic
TATACTACAAATGATGGGTG+TGG 0.647886 1_4:-36550199 Msa0161340:CDS
AGGAAGGGCAGATAACAGAT+GGG 0.654049 1_4:-36549256 Msa0161340:CDS
ACCCTCTTATTAGAACAAGA+GGG 0.671675 1_4:+36551428 None:intergenic
ATCTTAAAATCAAAGCCACA+AGG 0.681713 1_4:+36550418 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATGAAACAATTAT+TGG + chr1_4:36549529-36549548 None:intergenic 10.0%
!!! GTTTATATAATTCATTTTAT+AGG - chr1_4:36550284-36550303 Msa0161340:intron 10.0%
!! AAATTAATTAAAAATAGAGA+AGG - chr1_4:36550960-36550979 Msa0161340:intron 10.0%
!! AATTAATTAAAAATAGAGAA+GGG - chr1_4:36550961-36550980 Msa0161340:intron 10.0%
!!! TTTTTTTTTTCAAATATTAG+TGG - chr1_4:36551062-36551081 Msa0161340:intron 10.0%
!! AATAAATTAATATATATTGG+AGG + chr1_4:36551292-36551311 None:intergenic 10.0%
!! CACAATAAATTAATATATAT+TGG + chr1_4:36551295-36551314 None:intergenic 10.0%
!!! ATATTTTATATCAAGAATTA+AGG - chr1_4:36551622-36551641 Msa0161340:CDS 10.0%
!! AAAGAGTCATATAAAAATTA+AGG + chr1_4:36549637-36549656 None:intergenic 15.0%
!!! ATTATTGATTACAATGAATT+TGG - chr1_4:36549685-36549704 Msa0161340:intron 15.0%
!!! TTATTGATTACAATGAATTT+GGG - chr1_4:36549686-36549705 Msa0161340:intron 15.0%
!!! TAATAAAATGATATCCTTTT+AGG + chr1_4:36549744-36549763 None:intergenic 15.0%
!!! AGTTCAATTAATTTTTAAGT+CGG - chr1_4:36549887-36549906 Msa0161340:intron 15.0%
!! ATTATATAAACTTACTTTCT+GGG + chr1_4:36550275-36550294 None:intergenic 15.0%
!! AATTATATAAACTTACTTTC+TGG + chr1_4:36550276-36550295 None:intergenic 15.0%
!! TTAAGTATAATTATATGTGT+CGG + chr1_4:36550587-36550606 None:intergenic 15.0%
!! TTAATAATTTATTAGCGATA+TGG - chr1_4:36550617-36550636 Msa0161340:intron 15.0%
!! TAATAATTTATTAGCGATAT+GGG - chr1_4:36550618-36550637 Msa0161340:intron 15.0%
!! TTGAAATTGAAAACTAAATT+TGG + chr1_4:36550817-36550836 None:intergenic 15.0%
!! AAAGAAAAAAAAAAGATTCA+TGG + chr1_4:36551044-36551063 None:intergenic 15.0%
!! ATATTAATTTATTGTGTTTC+AGG - chr1_4:36551299-36551318 Msa0161340:intron 15.0%
!! TTGATCTTGAAAATTCATAA+AGG + chr1_4:36548916-36548935 None:intergenic 20.0%
!! AATTTGAAGAGTAATAAGAA+AGG + chr1_4:36549269-36549288 None:intergenic 20.0%
!!! ATTACTCTTCAAATTTTTGT+TGG - chr1_4:36549274-36549293 Msa0161340:intron 20.0%
!! AACCATTGTTAATTAATCAA+TGG - chr1_4:36549301-36549320 Msa0161340:intron 20.0%
!!! ATCCATTGATTAATTAACAA+TGG + chr1_4:36549306-36549325 None:intergenic 20.0%
!! ATTAATCAATGGATGAATTT+AGG - chr1_4:36549312-36549331 Msa0161340:intron 20.0%
!!! TTTAGGTATACATATTGTTT+TGG + chr1_4:36549727-36549746 None:intergenic 20.0%
!! AAACAATATGTATACCTAAA+AGG - chr1_4:36549727-36549746 Msa0161340:intron 20.0%
!!! GTAGTTTTTGAAGTAATAAA+AGG - chr1_4:36550016-36550035 Msa0161340:intron 20.0%
!!! TTTAATCATTGATTAATCAG+AGG - chr1_4:36550351-36550370 Msa0161340:CDS 20.0%
!! TAGAAATTCATGAATAAGTA+GGG - chr1_4:36551086-36551105 Msa0161340:intron 20.0%
!! TTAATATATATTGGAGGTTA+AGG + chr1_4:36551286-36551305 None:intergenic 20.0%
!! ATTATTTACATCAAGAATTC+AGG - chr1_4:36551568-36551587 Msa0161340:CDS 20.0%
!!! TGATTATTTATTTTGTCTTG+TGG - chr1_4:36551661-36551680 Msa0161340:CDS 20.0%
! ATGAATTTGACATACCTATT+TGG - chr1_4:36548949-36548968 Msa0161340:intron 25.0%
!! TTTCTGAAAGGAAATTTCAT+GGG + chr1_4:36549216-36549235 None:intergenic 25.0%
!!! TTTTCTGAAAGGAAATTTCA+TGG + chr1_4:36549217-36549236 None:intergenic 25.0%
!! GAAACAATTATTGGTTAAAG+AGG + chr1_4:36549520-36549539 None:intergenic 25.0%
! TAATTGACTACAGTTTCAAT+AGG - chr1_4:36549661-36549680 Msa0161340:intron 25.0%
! AAACTTCTAAATGGATCATT+GGG + chr1_4:36550052-36550071 None:intergenic 25.0%
! GTTACAAAGAAACTTCTAAA+TGG + chr1_4:36550061-36550080 None:intergenic 25.0%
! ACTATGATAAGACATTTATG+AGG + chr1_4:36550113-36550132 None:intergenic 25.0%
! TCATAAATGTCTTATCATAG+TGG - chr1_4:36550112-36550131 Msa0161340:intron 25.0%
! CATAAATGTCTTATCATAGT+GGG - chr1_4:36550113-36550132 Msa0161340:intron 25.0%
!!! TGATTTTAAGATAACTGCAA+AGG - chr1_4:36550179-36550198 Msa0161340:CDS 25.0%
!!! GATTTTAAGATAACTGCAAA+GGG - chr1_4:36550180-36550199 Msa0161340:CDS 25.0%
! TTATACTTTACCCTCAAAAT+AGG + chr1_4:36550494-36550513 None:intergenic 25.0%
! TGTTAGTAGAATAATGAACA+AGG + chr1_4:36550765-36550784 None:intergenic 25.0%
! GGTTAAAATGCATTTCATAA+GGG + chr1_4:36550796-36550815 None:intergenic 25.0%
! TGGTTAAAATGCATTTCATA+AGG + chr1_4:36550797-36550816 None:intergenic 25.0%
! CTAGAAATTCATGAATAAGT+AGG - chr1_4:36551085-36551104 Msa0161340:intron 25.0%
!!! AACAATGCATTTTAATATGC+AGG + chr1_4:36551134-36551153 None:intergenic 25.0%
! TTATATAAACCATACACTTC+TGG - chr1_4:36551245-36551264 Msa0161340:intron 25.0%
! AACCTTAAAATTATGTGCAT+TGG - chr1_4:36551397-36551416 Msa0161340:CDS 25.0%
GAAAATTCATTGCTCCAAAT+AGG + chr1_4:36548966-36548985 None:intergenic 30.0%
! TCACCTTTTATGTATTGTCA+AGG - chr1_4:36549005-36549024 Msa0161340:intron 30.0%
AATTTCCTTTCAGAAAACTC+AGG - chr1_4:36549220-36549239 Msa0161340:intron 30.0%
ATTTAGGAACACATTTGTCA+CGG - chr1_4:36549328-36549347 Msa0161340:intron 30.0%
AACTTCTAACACACAAGTTA+AGG + chr1_4:36549404-36549423 None:intergenic 30.0%
!!! TTGTTTTGGCAAAGTACAAA+TGG + chr1_4:36549713-36549732 None:intergenic 30.0%
! TCGTCATACACATTTAAGAT+TGG + chr1_4:36549918-36549937 None:intergenic 30.0%
ATCTTAAATGTGTATGACGA+CGG - chr1_4:36549918-36549937 Msa0161340:intron 30.0%
!!! CTATCGTTTGATTTTTTCAG+CGG + chr1_4:36549951-36549970 None:intergenic 30.0%
GAAACTTCTAAATGGATCAT+TGG + chr1_4:36550053-36550072 None:intergenic 30.0%
ATCTTAAAATCAAAGCCACA+AGG + chr1_4:36550171-36550190 None:intergenic 30.0%
AGGGTAAAAGAAGATTAAGA+TGG - chr1_4:36550199-36550218 Msa0161340:CDS 30.0%
ATTATTATTGTCAACCAGCT+TGG - chr1_4:36550246-36550265 Msa0161340:intron 30.0%
GATTAAATTAAGCACTAGCT+AGG + chr1_4:36550338-36550357 None:intergenic 30.0%
ATCATTTGTAGTATAGCCTT+AGG + chr1_4:36550382-36550401 None:intergenic 30.0%
TAAGGCTATACTACAAATGA+TGG - chr1_4:36550381-36550400 Msa0161340:CDS 30.0%
AAGGCTATACTACAAATGAT+GGG - chr1_4:36550382-36550401 Msa0161340:CDS 30.0%
! ATGACTTTTGACATGAGAAA+TGG + chr1_4:36550422-36550441 None:intergenic 30.0%
! ATATGCATGTACCTATTTTG+AGG - chr1_4:36550480-36550499 Msa0161340:intron 30.0%
!! TATGCATGTACCTATTTTGA+GGG - chr1_4:36550481-36550500 Msa0161340:intron 30.0%
GTAATTCACTTTAATCTGTG+TGG - chr1_4:36550739-36550758 Msa0161340:intron 30.0%
! TGCCAATGCACATAATTTTA+AGG + chr1_4:36551402-36551421 None:intergenic 30.0%
GTGATTCTTCTATTTGCATT+TGG + chr1_4:36551487-36551506 None:intergenic 30.0%
ACAAAAGAAAAGAACCAAAC+AGG - chr1_4:36551753-36551772 Msa0161340:CDS 30.0%
GACATATCAGCAATCATTCA+TGG - chr1_4:36548873-36548892 Msa0161340:CDS 35.0%
GTATGTCAAATTCATGCTGA+TGG + chr1_4:36548944-36548963 None:intergenic 35.0%
AAAGGTGAATCTGTTGTTGT+TGG + chr1_4:36548993-36549012 None:intergenic 35.0%
CAGCCTTGACAATACATAAA+AGG + chr1_4:36549011-36549030 None:intergenic 35.0%
TTCCCTCTTGTTCTAATAAG+AGG - chr1_4:36549156-36549175 Msa0161340:intron 35.0%
TCCCTCTTGTTCTAATAAGA+GGG - chr1_4:36549157-36549176 Msa0161340:intron 35.0%
ACCCTCTTATTAGAACAAGA+GGG + chr1_4:36549161-36549180 None:intergenic 35.0%
! AATCACCTGAGTTTTCTGAA+AGG + chr1_4:36549228-36549247 None:intergenic 35.0%
TCTATATCATGTTCCGCATT+GGG + chr1_4:36549365-36549384 None:intergenic 35.0%
TTCTATATCATGTTCCGCAT+TGG + chr1_4:36549366-36549385 None:intergenic 35.0%
! AGCTCTGATGTTAGATATGT+CGG - chr1_4:36549480-36549499 Msa0161340:intron 35.0%
! TTTGATTTCACTCGATAAGG+AGG + chr1_4:36549577-36549596 None:intergenic 35.0%
! GAGTTTGATTTCACTCGATA+AGG + chr1_4:36549580-36549599 None:intergenic 35.0%
! TTTAGAGCAATTTCAGCAGT+GGG + chr1_4:36549803-36549822 None:intergenic 35.0%
!!! TTTTAGAGCAATTTCAGCAG+TGG + chr1_4:36549804-36549823 None:intergenic 35.0%
AAACTATTCCAGCAATCGTT+CGG - chr1_4:36549821-36549840 Msa0161340:intron 35.0%
AGACATTTATGAGGCAGTTT+AGG + chr1_4:36550104-36550123 None:intergenic 35.0%
!! TATACTACAAATGATGGGTG+TGG - chr1_4:36550387-36550406 Msa0161340:CDS 35.0%
TCATGTCAAAAGTCATTTGC+AGG - chr1_4:36550426-36550445 Msa0161340:CDS 35.0%
TATAAAGCACAAACACTCCT+CGG - chr1_4:36550509-36550528 Msa0161340:intron 35.0%
TATGTTGAGTGAATTCAGTG+TGG + chr1_4:36550923-36550942 None:intergenic 35.0%
TAGAGAAGGGAAAATGTGAA+AGG - chr1_4:36550974-36550993 Msa0161340:intron 35.0%
AAGGTTTGCAAAGTAGAGAA+GGG - chr1_4:36550997-36551016 Msa0161340:intron 35.0%
! TACTTACTACCAGAAGTGTA+TGG + chr1_4:36551257-36551276 None:intergenic 35.0%
TTGTGTTTCAGGAATATCTG+AGG - chr1_4:36551310-36551329 Msa0161340:intron 35.0%
TTTCAGGAATATCTGAGGAA+GGG - chr1_4:36551315-36551334 Msa0161340:intron 35.0%
AAAGGATGGAGTACGAAATT+TGG + chr1_4:36551460-36551479 None:intergenic 35.0%
CTATTTGCATTTGGCTACAA+AGG + chr1_4:36551478-36551497 None:intergenic 35.0%
GAGGACTAACTATGCTACAA+GGG + chr1_4:36548848-36548867 None:intergenic 40.0%
AGAGGACTAACTATGCTACA+AGG + chr1_4:36548849-36548868 None:intergenic 40.0%
TAGCATAGTTAGTCCTCTAG+AGG - chr1_4:36548851-36548870 Msa0161340:CDS 40.0%
ATTGCTGATATGTCCTCTAG+AGG + chr1_4:36548867-36548886 None:intergenic 40.0%
! GGTTGTTGGTTGATCTTGTT+TGG + chr1_4:36549060-36549079 None:intergenic 40.0%
ACCAACAACCTGCTTCAAAT+TGG - chr1_4:36549070-36549089 Msa0161340:CDS 40.0%
CCAACAACCTGCTTCAAATT+GGG - chr1_4:36549071-36549090 Msa0161340:CDS 40.0%
! TTCAGAACCCAATTTGAAGC+AGG + chr1_4:36549081-36549100 None:intergenic 40.0%
CACCCTCTTATTAGAACAAG+AGG + chr1_4:36549162-36549181 None:intergenic 40.0%
! TTGTTCTAATAAGAGGGTGC+TGG - chr1_4:36549163-36549182 Msa0161340:intron 40.0%
GGTATAGATGTATCCCAATG+CGG - chr1_4:36549349-36549368 Msa0161340:intron 40.0%
! TTCTTTGTTTGTCGAAGTCG+CGG - chr1_4:36549603-36549622 Msa0161340:intron 40.0%
TAGCGGGAGTTAATTGTTGT+TGG - chr1_4:36549850-36549869 Msa0161340:intron 40.0%
GACAAACAATCTTCACCTTG+TGG - chr1_4:36550153-36550172 Msa0161340:intron 40.0%
ATTATTGTCAACCAGCTTGG+TGG - chr1_4:36550249-36550268 Msa0161340:intron 40.0%
TTAATCAGAGGCAAAGCCTA+AGG - chr1_4:36550363-36550382 Msa0161340:CDS 40.0%
CACACGCACAAATGTTTGAA+AGG - chr1_4:36550717-36550736 Msa0161340:intron 40.0%
GAAGGGAAAATGTGAAAGGA+AGG - chr1_4:36550978-36550997 Msa0161340:intron 40.0%
GAAGGTTTGCAAAGTAGAGA+AGG - chr1_4:36550996-36551015 Msa0161340:intron 40.0%
!! TGCATTTTAATATGCAGGCG+CGG + chr1_4:36551129-36551148 None:intergenic 40.0%
CCTCTCGAGTATAGTTCAAT+TGG + chr1_4:36551186-36551205 None:intergenic 40.0%
CCAATTGAACTATACTCGAG+AGG - chr1_4:36551183-36551202 Msa0161340:intron 40.0%
GTTTCAGGAATATCTGAGGA+AGG - chr1_4:36551314-36551333 Msa0161340:intron 40.0%
TTGCATTTGGCTACAAAGGA+TGG + chr1_4:36551474-36551493 None:intergenic 40.0%
ATCACGACAACTACAACTTG+AGG - chr1_4:36551502-36551521 Msa0161340:CDS 40.0%
AACTACAACTTGAGGTTGAG+AGG - chr1_4:36551510-36551529 Msa0161340:CDS 40.0%
GAGCAATAAACGACAATTCG+AGG - chr1_4:36551532-36551551 Msa0161340:CDS 40.0%
!! ATCGGTCATTTTCTCCTGTT+TGG + chr1_4:36551770-36551789 None:intergenic 40.0%
! CCCAATTTGAAGCAGGTTGT+TGG + chr1_4:36549074-36549093 None:intergenic 45.0%
! GTGATTTTTCCCCAGATCAG+AGG - chr1_4:36549189-36549208 Msa0161340:intron 45.0%
TTTCATGGGACCTCTGATCT+GGG + chr1_4:36549202-36549221 None:intergenic 45.0%
ATTTCATGGGACCTCTGATC+TGG + chr1_4:36549203-36549222 None:intergenic 45.0%
TTCACTCGATAAGGAGGTTG+AGG + chr1_4:36549571-36549590 None:intergenic 45.0%
TAGAAAAGCCGAACGATTGC+TGG + chr1_4:36549832-36549851 None:intergenic 45.0%
! CAATCGTTCGGCTTTTCTAG+CGG - chr1_4:36549833-36549852 Msa0161340:intron 45.0%
!! AATCGTTCGGCTTTTCTAGC+GGG - chr1_4:36549834-36549853 Msa0161340:intron 45.0%
GATTAGACGTGTCCTGGTAT+CGG - chr1_4:36550531-36550550 Msa0161340:intron 45.0%
!! TATATGTGTCGGTGTCGTGT+CGG + chr1_4:36550576-36550595 None:intergenic 45.0%
!! CATTTTAATATGCAGGCGCG+GGG + chr1_4:36551127-36551146 None:intergenic 45.0%
!! GCATTTTAATATGCAGGCGC+GGG + chr1_4:36551128-36551147 None:intergenic 45.0%
AGGAAGGGCAGATAACAGAT+GGG - chr1_4:36551330-36551349 Msa0161340:intron 45.0%
GATGCAGCGAAATTTGCAAC+TGG - chr1_4:36551687-36551706 Msa0161340:CDS 45.0%
!! TATTATATCATAAAAATAAA+TGG - chr1_4:36549454-36549473 Msa0161340:intron 5.0%
TTCATGGGACCTCTGATCTG+GGG + chr1_4:36549201-36549220 None:intergenic 50.0%
TTTGTTTGTCGAAGTCGCGG+TGG - chr1_4:36549606-36549625 Msa0161340:intron 50.0%
TTGTTTGTCGAAGTCGCGGT+GGG - chr1_4:36549607-36549626 Msa0161340:intron 50.0%
GAGGAAGGGCAGATAACAGA+TGG - chr1_4:36551329-36551348 Msa0161340:intron 50.0%
TACTTTCTGGGCCACCAAGC+TGG + chr1_4:36550263-36550282 None:intergenic 55.0%
! TCCTCGGATTAGACGTGTCC+TGG - chr1_4:36550525-36550544 Msa0161340:intron 55.0%
ACCAGGACACGTCTAATCCG+AGG + chr1_4:36550529-36550548 None:intergenic 55.0%
TACGACACGTGTCCGATACC+AGG + chr1_4:36550546-36550565 None:intergenic 55.0%
CAGGCGCGGGGTTCAAACTT+TGG + chr1_4:36551115-36551134 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 36548804 36551804 36548804 ID=Msa0161340;Name=Msa0161340
chr1_4 mRNA 36548804 36551804 36548804 ID=Msa0161340-mRNA-1;Parent=Msa0161340;Name=Msa0161340-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0|0|1|1|1|6|0|297
chr1_4 exon 36551367 36551804 36551367 ID=Msa0161340-mRNA-1:exon:10780;Parent=Msa0161340-mRNA-1
chr1_4 exon 36550329 36550476 36550329 ID=Msa0161340-mRNA-1:exon:10779;Parent=Msa0161340-mRNA-1
chr1_4 exon 36550172 36550237 36550172 ID=Msa0161340-mRNA-1:exon:10778;Parent=Msa0161340-mRNA-1
chr1_4 exon 36549233 36549287 36549233 ID=Msa0161340-mRNA-1:exon:10777;Parent=Msa0161340-mRNA-1
chr1_4 exon 36549055 36549124 36549055 ID=Msa0161340-mRNA-1:exon:10776;Parent=Msa0161340-mRNA-1
chr1_4 exon 36548804 36548920 36548804 ID=Msa0161340-mRNA-1:exon:10775;Parent=Msa0161340-mRNA-1
chr1_4 CDS 36551367 36551804 36551367 ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1
chr1_4 CDS 36550329 36550476 36550329 ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1
chr1_4 CDS 36550172 36550237 36550172 ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1
chr1_4 CDS 36549233 36549287 36549233 ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1
chr1_4 CDS 36549055 36549124 36549055 ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1
chr1_4 CDS 36548804 36548920 36548804 ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1
Gene Sequence

>Msa0161340

ATGTACATAAATCATTGGGATTATGAACATCAAAGCTATGACCCTTGTAGCATAGTTAGTCCTCTAGAGGACATATCAGCAATCATTCATGGATCAAATGCAAATGAAACCTTTATGAATTTTCAAGATCAACAACACCATCAGCATGAATTTGACATACCTATTTGGAGCAATGAATTTTCTATGCCAACAACAACAGATTCACCTTTTATGTATTGTCAAGGCTGTAAAGATAACTACACTGAAAATATCACCAAACAAGATCAACCAACAACCTGCTTCAAATTGGGTTCTGAATCTTTAATGTCTAGCAGTGAAGATAGTATTTCTTCTTGTGAAAAGTGTAGTGAGTTTCCCTCTTGTTCTAATAAGAGGGTGCTGGAGAGTGATTTTTCCCCAGATCAGAGGTCCCATGAAATTTCCTTTCAGAAAACTCAGTGGGAATCATGTACAAAGCAAGACAAACAATCTTCACCTTGTGGCTTTGATTTTAAGATAACTGCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGAATGAGTCATTTATTATTATTGTCAACCAGCTTGGTGGCCCAGAAAAGGCAAAGCCTAAGGCTATACTACAAATGATGGGTGTGGATGTGTTGACCATTTCTCATGTCAAAAGAATATCTGAGGAAGGGCAGATAACAGATGGGATTAATGAGCTTCAAGTTAAAATCCAAATGCAAATAGAAGAATCACGACAACTACAACTTGAGGTTGAGAGGAGCAATAAACGACAATTCGAGATGCAGCGAAATTTGCAACTGGTGATTGAACAGCAGAAGAAGCAGCTCAAGTTAATGTTAGATCAACAAAAGAAAAGAACCAAACAGGAGAAAATGACCGATTTAAGACGAAAATGA

Protein sequence

>Msa0161340

MYINHWDYEHQSYDPCSIVSPLEDISAIIHGSNANETFMNFQDQQHHQHEFDIPIWSNEFSMPTTTDSPFMYCQGCKDNYTENITKQDQPTTCFKLGSESLMSSSEDSISSCEKCSEFPSCSNKRVLESDFSPDQRSHEISFQKTQWESCTKQDKQSSPCGFDFKITAKGKRRLRWTKELNESFIIIVNQLGGPEKAKPKAILQMMGVDVLTISHVKRISEEGQITDGINELQVKIQMQIEESRQLQLEVERSNKRQFEMQRNLQLVIEQQKKQLKLMLDQQKKRTKQEKMTDLRRK*