Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161340 | XP_013467654.1 | 85.404 | 322 | 20 | 3 | 1 | 297 | 1 | 320 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161340 | sp|Q0WVU3|PHL5_ARATH | 40.719 | 167 | 77 | 4 | 140 | 284 | 156 | 322 | 2.47e-26 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161340 | A0A072VJ98 | 85.404 | 322 | 20 | 3 | 1 | 297 | 1 | 320 | 0.0 | 534 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0161340 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161340 | MtrunA17_Chr1g0175071 | 85.404 | 322 | 20 | 3 | 1 | 297 | 1 | 320 | 0.0 | 534 |
| Msa0161340 | MtrunA17_Chr7g0258531 | 41.241 | 274 | 110 | 9 | 53 | 290 | 90 | 348 | 3.76e-46 | 159 |
| Msa0161340 | MtrunA17_Chr1g0175091 | 47.407 | 135 | 53 | 3 | 167 | 284 | 254 | 387 | 2.61e-26 | 107 |
| Msa0161340 | MtrunA17_Chr7g0258551 | 45.802 | 131 | 54 | 2 | 171 | 284 | 212 | 342 | 1.03e-24 | 102 |
| Msa0161340 | MtrunA17_Chr7g0261911 | 41.045 | 134 | 61 | 2 | 167 | 282 | 258 | 391 | 1.12e-23 | 100 |
| Msa0161340 | MtrunA17_Chr2g0291021 | 43.284 | 134 | 56 | 3 | 171 | 284 | 49 | 182 | 1.14e-23 | 98.6 |
| Msa0161340 | MtrunA17_Chr1g0190301 | 33.953 | 215 | 119 | 5 | 91 | 284 | 94 | 306 | 1.14e-22 | 96.7 |
| Msa0161340 | MtrunA17_Chr7g0254981 | 34.783 | 138 | 69 | 2 | 168 | 284 | 47 | 184 | 7.78e-20 | 87.0 |
| Msa0161340 | MtrunA17_Chr7g0274471 | 38.636 | 132 | 63 | 2 | 171 | 284 | 218 | 349 | 9.01e-20 | 89.0 |
| Msa0161340 | MtrunA17_Chr8g0356501 | 35.811 | 148 | 74 | 3 | 166 | 292 | 32 | 179 | 4.80e-18 | 83.2 |
| Msa0161340 | MtrunA17_Chr6g0461641 | 35.294 | 153 | 65 | 4 | 166 | 284 | 37 | 189 | 1.64e-17 | 82.0 |
| Msa0161340 | MtrunA17_Chr2g0310011 | 37.121 | 132 | 62 | 3 | 166 | 276 | 30 | 161 | 2.07e-17 | 81.3 |
| Msa0161340 | MtrunA17_Chr5g0417521 | 32.192 | 146 | 69 | 3 | 164 | 279 | 8 | 153 | 5.09e-15 | 74.3 |
| Msa0161340 | MtrunA17_Chr4g0042451 | 32.867 | 143 | 67 | 3 | 166 | 279 | 12 | 154 | 2.36e-14 | 72.4 |
| Msa0161340 | MtrunA17_Chr5g0409731 | 31.098 | 164 | 83 | 2 | 161 | 294 | 15 | 178 | 3.84e-14 | 71.2 |
| Msa0161340 | MtrunA17_Chr7g0242521 | 35.000 | 140 | 71 | 3 | 167 | 286 | 9 | 148 | 1.74e-12 | 65.9 |
| Msa0161340 | MtrunA17_Chr1g0197171 | 31.034 | 145 | 79 | 5 | 157 | 284 | 33 | 173 | 7.19e-12 | 64.7 |
| Msa0161340 | MtrunA17_Chr2g0290991 | 48.438 | 64 | 30 | 1 | 154 | 217 | 25 | 85 | 7.61e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161340 | AT5G06800.1 | 40.719 | 167 | 77 | 4 | 140 | 284 | 156 | 322 | 2.51e-27 | 109 |
| Msa0161340 | AT5G06800.2 | 38.372 | 172 | 79 | 3 | 140 | 284 | 156 | 327 | 6.76e-26 | 105 |
| Msa0161340 | AT2G01060.1 | 43.609 | 133 | 56 | 3 | 171 | 284 | 15 | 147 | 1.42e-23 | 97.8 |
| Msa0161340 | AT4G28610.1 | 41.045 | 134 | 60 | 2 | 168 | 282 | 222 | 355 | 1.61e-22 | 97.1 |
| Msa0161340 | AT5G29000.2 | 38.129 | 139 | 65 | 3 | 167 | 284 | 227 | 365 | 6.08e-21 | 92.4 |
| Msa0161340 | AT5G29000.1 | 38.129 | 139 | 65 | 3 | 167 | 284 | 184 | 322 | 8.54e-21 | 91.7 |
| Msa0161340 | AT5G29000.3 | 38.129 | 139 | 65 | 3 | 167 | 284 | 184 | 322 | 8.54e-21 | 91.7 |
| Msa0161340 | AT3G04450.1 | 35.461 | 141 | 70 | 2 | 171 | 290 | 238 | 378 | 2.75e-20 | 90.9 |
| Msa0161340 | AT3G04450.4 | 35.461 | 141 | 70 | 2 | 171 | 290 | 198 | 338 | 3.56e-20 | 90.1 |
| Msa0161340 | AT3G04450.2 | 35.461 | 141 | 70 | 2 | 171 | 290 | 198 | 338 | 3.56e-20 | 90.1 |
| Msa0161340 | AT3G13040.3 | 38.298 | 141 | 64 | 3 | 167 | 284 | 237 | 377 | 6.97e-19 | 86.7 |
| Msa0161340 | AT3G13040.1 | 38.298 | 141 | 64 | 3 | 167 | 284 | 237 | 377 | 6.97e-19 | 86.7 |
| Msa0161340 | AT3G13040.2 | 38.298 | 141 | 64 | 3 | 167 | 284 | 237 | 377 | 6.97e-19 | 86.7 |
| Msa0161340 | AT3G04030.3 | 33.750 | 160 | 73 | 3 | 155 | 281 | 29 | 188 | 9.48e-19 | 85.9 |
| Msa0161340 | AT5G18240.1 | 33.557 | 149 | 66 | 3 | 166 | 281 | 40 | 188 | 2.31e-17 | 82.0 |
| Msa0161340 | AT5G18240.4 | 33.557 | 149 | 66 | 3 | 166 | 281 | 40 | 188 | 2.31e-17 | 82.0 |
| Msa0161340 | AT4G13640.1 | 32.544 | 169 | 84 | 3 | 154 | 292 | 20 | 188 | 4.01e-17 | 80.1 |
| Msa0161340 | AT1G79430.2 | 35.374 | 147 | 74 | 3 | 166 | 291 | 29 | 175 | 4.26e-17 | 80.9 |
| Msa0161340 | AT3G24120.1 | 33.136 | 169 | 83 | 3 | 154 | 292 | 24 | 192 | 8.61e-17 | 79.3 |
| Msa0161340 | AT3G04030.2 | 32.500 | 160 | 74 | 4 | 155 | 281 | 29 | 187 | 6.25e-16 | 77.8 |
| Msa0161340 | AT2G20400.1 | 36.154 | 130 | 65 | 2 | 171 | 282 | 231 | 360 | 2.53e-15 | 76.3 |
| Msa0161340 | AT4G13640.2 | 31.977 | 172 | 84 | 4 | 154 | 292 | 20 | 191 | 3.19e-15 | 74.7 |
| Msa0161340 | AT2G20400.2 | 36.641 | 131 | 64 | 2 | 171 | 282 | 231 | 361 | 5.29e-15 | 75.1 |
| Msa0161340 | AT5G18240.5 | 32.886 | 149 | 65 | 4 | 166 | 281 | 40 | 186 | 6.43e-15 | 74.7 |
| Msa0161340 | AT3G24120.2 | 32.558 | 172 | 83 | 4 | 154 | 292 | 24 | 195 | 6.73e-15 | 73.9 |
| Msa0161340 | AT3G04030.1 | 30.625 | 160 | 72 | 4 | 155 | 281 | 29 | 182 | 4.16e-14 | 72.4 |
| Msa0161340 | AT1G69580.1 | 32.450 | 151 | 63 | 3 | 166 | 279 | 29 | 177 | 1.16e-13 | 70.9 |
| Msa0161340 | AT1G69580.2 | 31.579 | 152 | 64 | 3 | 166 | 279 | 29 | 178 | 3.95e-13 | 69.3 |
| Msa0161340 | AT5G18240.2 | 32.593 | 135 | 75 | 4 | 166 | 284 | 40 | 174 | 5.07e-13 | 69.3 |
| Msa0161340 | AT5G18240.3 | 32.593 | 135 | 75 | 4 | 166 | 284 | 40 | 174 | 5.07e-13 | 69.3 |
| Msa0161340 | AT3G12730.1 | 55.769 | 52 | 23 | 0 | 166 | 217 | 18 | 69 | 2.28e-12 | 65.9 |
| Msa0161340 | AT5G29000.4 | 54.902 | 51 | 23 | 0 | 167 | 217 | 227 | 277 | 9.90e-12 | 65.1 |
| Msa0161340 | AT5G06800.3 | 37.000 | 100 | 58 | 1 | 139 | 233 | 155 | 254 | 1.84e-11 | 63.9 |
| Msa0161340 | AT4G04605.1 | 43.210 | 81 | 34 | 1 | 173 | 253 | 16 | 84 | 2.92e-11 | 62.4 |
| Msa0161340 | AT3G04450.3 | 53.191 | 47 | 22 | 0 | 171 | 217 | 238 | 284 | 9.07e-11 | 62.0 |
Find 51 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAACCTGCTTCAAAT+TGG | 0.204478 | 1_4:-36551516 | Msa0161340:CDS |
| ATGAATTTGACATACCTATT+TGG | 0.267271 | 1_4:-36551637 | Msa0161340:CDS |
| CAGCCTTGACAATACATAAA+AGG | 0.269493 | 1_4:+36551578 | None:intergenic |
| GTGATTCTTCTATTTGCATT+TGG | 0.336254 | 1_4:+36549102 | None:intergenic |
| ATTTCATGGGACCTCTGATC+TGG | 0.337576 | 1_4:+36551386 | None:intergenic |
| TTCCCTCTTGTTCTAATAAG+AGG | 0.359635 | 1_4:-36551430 | Msa0161340:CDS |
| CTAAAATGTACATAAATCAT+TGG | 0.360570 | 1_4:-36551787 | None:intergenic |
| ATTATATAAACTTACTTTCT+GGG | 0.366001 | 1_4:+36550314 | None:intergenic |
| GAAAATTCATTGCTCCAAAT+AGG | 0.375788 | 1_4:+36551623 | None:intergenic |
| CCAACAACCTGCTTCAAATT+GGG | 0.382315 | 1_4:-36551515 | Msa0161340:CDS |
| CCCAATTTGAAGCAGGTTGT+TGG | 0.384228 | 1_4:+36551515 | None:intergenic |
| GGTTGTTGGTTGATCTTGTT+TGG | 0.395689 | 1_4:+36551529 | None:intergenic |
| TAAAATGTACATAAATCATT+GGG | 0.405097 | 1_4:-36551786 | None:intergenic |
| TTGATCTTGAAAATTCATAA+AGG | 0.413952 | 1_4:+36551673 | None:intergenic |
| GACATATCAGCAATCATTCA+TGG | 0.436755 | 1_4:-36551713 | Msa0161340:CDS |
| ACAAAAGAAAAGAACCAAAC+AGG | 0.442809 | 1_4:-36548833 | Msa0161340:CDS |
| ATCATTTGTAGTATAGCCTT+AGG | 0.450838 | 1_4:+36550207 | None:intergenic |
| TAAGGCTATACTACAAATGA+TGG | 0.452684 | 1_4:-36550205 | Msa0161340:CDS |
| TTTCATGGGACCTCTGATCT+GGG | 0.460927 | 1_4:+36551387 | None:intergenic |
| TTCAGAACCCAATTTGAAGC+AGG | 0.463730 | 1_4:+36551508 | None:intergenic |
| TACTTTCTGGGCCACCAAGC+TGG | 0.476548 | 1_4:+36550326 | None:intergenic |
| ATTATTATTGTCAACCAGCT+TGG | 0.483051 | 1_4:-36550340 | Msa0161340:CDS |
| TTGTTCTAATAAGAGGGTGC+TGG | 0.513933 | 1_4:-36551423 | Msa0161340:CDS |
| TCCCTCTTGTTCTAATAAGA+GGG | 0.514383 | 1_4:-36551429 | Msa0161340:CDS |
| GATGCAGCGAAATTTGCAAC+TGG | 0.519384 | 1_4:-36548899 | Msa0161340:CDS |
| ATTATTGTCAACCAGCTTGG+TGG | 0.523219 | 1_4:-36550337 | Msa0161340:CDS |
| TTTCTGAAAGGAAATTTCAT+GGG | 0.532722 | 1_4:+36551373 | None:intergenic |
| AGGGTAAAAGAAGATTAAGA+TGG | 0.538823 | 1_4:-36550387 | Msa0161340:CDS |
| GAGGAAGGGCAGATAACAGA+TGG | 0.546455 | 1_4:-36549257 | Msa0161340:CDS |
| GAGCAATAAACGACAATTCG+AGG | 0.546674 | 1_4:-36549054 | Msa0161340:intron |
| CACCCTCTTATTAGAACAAG+AGG | 0.558672 | 1_4:+36551427 | None:intergenic |
| AAAGGTGAATCTGTTGTTGT+TGG | 0.559028 | 1_4:+36551596 | None:intergenic |
| TTAATCAGAGGCAAAGCCTA+AGG | 0.566249 | 1_4:-36550223 | Msa0161340:intron |
| AACTACAACTTGAGGTTGAG+AGG | 0.574473 | 1_4:-36549076 | Msa0161340:CDS |
| AGAGGACTAACTATGCTACA+AGG | 0.576073 | 1_4:+36551740 | None:intergenic |
| GTTTCAGGAATATCTGAGGA+AGG | 0.576924 | 1_4:-36549272 | Msa0161340:intron |
| AATTTCCTTTCAGAAAACTC+AGG | 0.594791 | 1_4:-36551366 | Msa0161340:intron |
| GACAAACAATCTTCACCTTG+TGG | 0.605075 | 1_4:-36550433 | Msa0161340:CDS |
| AAGGCTATACTACAAATGAT+GGG | 0.610409 | 1_4:-36550204 | Msa0161340:CDS |
| ATTGCTGATATGTCCTCTAG+AGG | 0.610808 | 1_4:+36551722 | None:intergenic |
| GTATGTCAAATTCATGCTGA+TGG | 0.622104 | 1_4:+36551645 | None:intergenic |
| TAGCATAGTTAGTCCTCTAG+AGG | 0.629733 | 1_4:-36551735 | Msa0161340:CDS |
| TTTCAGGAATATCTGAGGAA+GGG | 0.636689 | 1_4:-36549271 | Msa0161340:intron |
| TTGTGTTTCAGGAATATCTG+AGG | 0.637900 | 1_4:-36549276 | Msa0161340:intron |
| ATCACGACAACTACAACTTG+AGG | 0.638258 | 1_4:-36549084 | Msa0161340:CDS |
| TTCATGGGACCTCTGATCTG+GGG | 0.643024 | 1_4:+36551388 | None:intergenic |
| GAGGACTAACTATGCTACAA+GGG | 0.646307 | 1_4:+36551741 | None:intergenic |
| TATACTACAAATGATGGGTG+TGG | 0.647886 | 1_4:-36550199 | Msa0161340:CDS |
| AGGAAGGGCAGATAACAGAT+GGG | 0.654049 | 1_4:-36549256 | Msa0161340:CDS |
| ACCCTCTTATTAGAACAAGA+GGG | 0.671675 | 1_4:+36551428 | None:intergenic |
| ATCTTAAAATCAAAGCCACA+AGG | 0.681713 | 1_4:+36550418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATGAAACAATTAT+TGG | + | chr1_4:36549529-36549548 | None:intergenic | 10.0% |
| !!! | GTTTATATAATTCATTTTAT+AGG | - | chr1_4:36550284-36550303 | Msa0161340:intron | 10.0% |
| !! | AAATTAATTAAAAATAGAGA+AGG | - | chr1_4:36550960-36550979 | Msa0161340:intron | 10.0% |
| !! | AATTAATTAAAAATAGAGAA+GGG | - | chr1_4:36550961-36550980 | Msa0161340:intron | 10.0% |
| !!! | TTTTTTTTTTCAAATATTAG+TGG | - | chr1_4:36551062-36551081 | Msa0161340:intron | 10.0% |
| !! | AATAAATTAATATATATTGG+AGG | + | chr1_4:36551292-36551311 | None:intergenic | 10.0% |
| !! | CACAATAAATTAATATATAT+TGG | + | chr1_4:36551295-36551314 | None:intergenic | 10.0% |
| !!! | ATATTTTATATCAAGAATTA+AGG | - | chr1_4:36551622-36551641 | Msa0161340:CDS | 10.0% |
| !! | AAAGAGTCATATAAAAATTA+AGG | + | chr1_4:36549637-36549656 | None:intergenic | 15.0% |
| !!! | ATTATTGATTACAATGAATT+TGG | - | chr1_4:36549685-36549704 | Msa0161340:intron | 15.0% |
| !!! | TTATTGATTACAATGAATTT+GGG | - | chr1_4:36549686-36549705 | Msa0161340:intron | 15.0% |
| !!! | TAATAAAATGATATCCTTTT+AGG | + | chr1_4:36549744-36549763 | None:intergenic | 15.0% |
| !!! | AGTTCAATTAATTTTTAAGT+CGG | - | chr1_4:36549887-36549906 | Msa0161340:intron | 15.0% |
| !! | ATTATATAAACTTACTTTCT+GGG | + | chr1_4:36550275-36550294 | None:intergenic | 15.0% |
| !! | AATTATATAAACTTACTTTC+TGG | + | chr1_4:36550276-36550295 | None:intergenic | 15.0% |
| !! | TTAAGTATAATTATATGTGT+CGG | + | chr1_4:36550587-36550606 | None:intergenic | 15.0% |
| !! | TTAATAATTTATTAGCGATA+TGG | - | chr1_4:36550617-36550636 | Msa0161340:intron | 15.0% |
| !! | TAATAATTTATTAGCGATAT+GGG | - | chr1_4:36550618-36550637 | Msa0161340:intron | 15.0% |
| !! | TTGAAATTGAAAACTAAATT+TGG | + | chr1_4:36550817-36550836 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAAAAAGATTCA+TGG | + | chr1_4:36551044-36551063 | None:intergenic | 15.0% |
| !! | ATATTAATTTATTGTGTTTC+AGG | - | chr1_4:36551299-36551318 | Msa0161340:intron | 15.0% |
| !! | TTGATCTTGAAAATTCATAA+AGG | + | chr1_4:36548916-36548935 | None:intergenic | 20.0% |
| !! | AATTTGAAGAGTAATAAGAA+AGG | + | chr1_4:36549269-36549288 | None:intergenic | 20.0% |
| !!! | ATTACTCTTCAAATTTTTGT+TGG | - | chr1_4:36549274-36549293 | Msa0161340:intron | 20.0% |
| !! | AACCATTGTTAATTAATCAA+TGG | - | chr1_4:36549301-36549320 | Msa0161340:intron | 20.0% |
| !!! | ATCCATTGATTAATTAACAA+TGG | + | chr1_4:36549306-36549325 | None:intergenic | 20.0% |
| !! | ATTAATCAATGGATGAATTT+AGG | - | chr1_4:36549312-36549331 | Msa0161340:intron | 20.0% |
| !!! | TTTAGGTATACATATTGTTT+TGG | + | chr1_4:36549727-36549746 | None:intergenic | 20.0% |
| !! | AAACAATATGTATACCTAAA+AGG | - | chr1_4:36549727-36549746 | Msa0161340:intron | 20.0% |
| !!! | GTAGTTTTTGAAGTAATAAA+AGG | - | chr1_4:36550016-36550035 | Msa0161340:intron | 20.0% |
| !!! | TTTAATCATTGATTAATCAG+AGG | - | chr1_4:36550351-36550370 | Msa0161340:CDS | 20.0% |
| !! | TAGAAATTCATGAATAAGTA+GGG | - | chr1_4:36551086-36551105 | Msa0161340:intron | 20.0% |
| !! | TTAATATATATTGGAGGTTA+AGG | + | chr1_4:36551286-36551305 | None:intergenic | 20.0% |
| !! | ATTATTTACATCAAGAATTC+AGG | - | chr1_4:36551568-36551587 | Msa0161340:CDS | 20.0% |
| !!! | TGATTATTTATTTTGTCTTG+TGG | - | chr1_4:36551661-36551680 | Msa0161340:CDS | 20.0% |
| ! | ATGAATTTGACATACCTATT+TGG | - | chr1_4:36548949-36548968 | Msa0161340:intron | 25.0% |
| !! | TTTCTGAAAGGAAATTTCAT+GGG | + | chr1_4:36549216-36549235 | None:intergenic | 25.0% |
| !!! | TTTTCTGAAAGGAAATTTCA+TGG | + | chr1_4:36549217-36549236 | None:intergenic | 25.0% |
| !! | GAAACAATTATTGGTTAAAG+AGG | + | chr1_4:36549520-36549539 | None:intergenic | 25.0% |
| ! | TAATTGACTACAGTTTCAAT+AGG | - | chr1_4:36549661-36549680 | Msa0161340:intron | 25.0% |
| ! | AAACTTCTAAATGGATCATT+GGG | + | chr1_4:36550052-36550071 | None:intergenic | 25.0% |
| ! | GTTACAAAGAAACTTCTAAA+TGG | + | chr1_4:36550061-36550080 | None:intergenic | 25.0% |
| ! | ACTATGATAAGACATTTATG+AGG | + | chr1_4:36550113-36550132 | None:intergenic | 25.0% |
| ! | TCATAAATGTCTTATCATAG+TGG | - | chr1_4:36550112-36550131 | Msa0161340:intron | 25.0% |
| ! | CATAAATGTCTTATCATAGT+GGG | - | chr1_4:36550113-36550132 | Msa0161340:intron | 25.0% |
| !!! | TGATTTTAAGATAACTGCAA+AGG | - | chr1_4:36550179-36550198 | Msa0161340:CDS | 25.0% |
| !!! | GATTTTAAGATAACTGCAAA+GGG | - | chr1_4:36550180-36550199 | Msa0161340:CDS | 25.0% |
| ! | TTATACTTTACCCTCAAAAT+AGG | + | chr1_4:36550494-36550513 | None:intergenic | 25.0% |
| ! | TGTTAGTAGAATAATGAACA+AGG | + | chr1_4:36550765-36550784 | None:intergenic | 25.0% |
| ! | GGTTAAAATGCATTTCATAA+GGG | + | chr1_4:36550796-36550815 | None:intergenic | 25.0% |
| ! | TGGTTAAAATGCATTTCATA+AGG | + | chr1_4:36550797-36550816 | None:intergenic | 25.0% |
| ! | CTAGAAATTCATGAATAAGT+AGG | - | chr1_4:36551085-36551104 | Msa0161340:intron | 25.0% |
| !!! | AACAATGCATTTTAATATGC+AGG | + | chr1_4:36551134-36551153 | None:intergenic | 25.0% |
| ! | TTATATAAACCATACACTTC+TGG | - | chr1_4:36551245-36551264 | Msa0161340:intron | 25.0% |
| ! | AACCTTAAAATTATGTGCAT+TGG | - | chr1_4:36551397-36551416 | Msa0161340:CDS | 25.0% |
| GAAAATTCATTGCTCCAAAT+AGG | + | chr1_4:36548966-36548985 | None:intergenic | 30.0% | |
| ! | TCACCTTTTATGTATTGTCA+AGG | - | chr1_4:36549005-36549024 | Msa0161340:intron | 30.0% |
| AATTTCCTTTCAGAAAACTC+AGG | - | chr1_4:36549220-36549239 | Msa0161340:intron | 30.0% | |
| ATTTAGGAACACATTTGTCA+CGG | - | chr1_4:36549328-36549347 | Msa0161340:intron | 30.0% | |
| AACTTCTAACACACAAGTTA+AGG | + | chr1_4:36549404-36549423 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGGCAAAGTACAAA+TGG | + | chr1_4:36549713-36549732 | None:intergenic | 30.0% |
| ! | TCGTCATACACATTTAAGAT+TGG | + | chr1_4:36549918-36549937 | None:intergenic | 30.0% |
| ATCTTAAATGTGTATGACGA+CGG | - | chr1_4:36549918-36549937 | Msa0161340:intron | 30.0% | |
| !!! | CTATCGTTTGATTTTTTCAG+CGG | + | chr1_4:36549951-36549970 | None:intergenic | 30.0% |
| GAAACTTCTAAATGGATCAT+TGG | + | chr1_4:36550053-36550072 | None:intergenic | 30.0% | |
| ATCTTAAAATCAAAGCCACA+AGG | + | chr1_4:36550171-36550190 | None:intergenic | 30.0% | |
| AGGGTAAAAGAAGATTAAGA+TGG | - | chr1_4:36550199-36550218 | Msa0161340:CDS | 30.0% | |
| ATTATTATTGTCAACCAGCT+TGG | - | chr1_4:36550246-36550265 | Msa0161340:intron | 30.0% | |
| GATTAAATTAAGCACTAGCT+AGG | + | chr1_4:36550338-36550357 | None:intergenic | 30.0% | |
| ATCATTTGTAGTATAGCCTT+AGG | + | chr1_4:36550382-36550401 | None:intergenic | 30.0% | |
| TAAGGCTATACTACAAATGA+TGG | - | chr1_4:36550381-36550400 | Msa0161340:CDS | 30.0% | |
| AAGGCTATACTACAAATGAT+GGG | - | chr1_4:36550382-36550401 | Msa0161340:CDS | 30.0% | |
| ! | ATGACTTTTGACATGAGAAA+TGG | + | chr1_4:36550422-36550441 | None:intergenic | 30.0% |
| ! | ATATGCATGTACCTATTTTG+AGG | - | chr1_4:36550480-36550499 | Msa0161340:intron | 30.0% |
| !! | TATGCATGTACCTATTTTGA+GGG | - | chr1_4:36550481-36550500 | Msa0161340:intron | 30.0% |
| GTAATTCACTTTAATCTGTG+TGG | - | chr1_4:36550739-36550758 | Msa0161340:intron | 30.0% | |
| ! | TGCCAATGCACATAATTTTA+AGG | + | chr1_4:36551402-36551421 | None:intergenic | 30.0% |
| GTGATTCTTCTATTTGCATT+TGG | + | chr1_4:36551487-36551506 | None:intergenic | 30.0% | |
| ACAAAAGAAAAGAACCAAAC+AGG | - | chr1_4:36551753-36551772 | Msa0161340:CDS | 30.0% | |
| GACATATCAGCAATCATTCA+TGG | - | chr1_4:36548873-36548892 | Msa0161340:CDS | 35.0% | |
| GTATGTCAAATTCATGCTGA+TGG | + | chr1_4:36548944-36548963 | None:intergenic | 35.0% | |
| AAAGGTGAATCTGTTGTTGT+TGG | + | chr1_4:36548993-36549012 | None:intergenic | 35.0% | |
| CAGCCTTGACAATACATAAA+AGG | + | chr1_4:36549011-36549030 | None:intergenic | 35.0% | |
| TTCCCTCTTGTTCTAATAAG+AGG | - | chr1_4:36549156-36549175 | Msa0161340:intron | 35.0% | |
| TCCCTCTTGTTCTAATAAGA+GGG | - | chr1_4:36549157-36549176 | Msa0161340:intron | 35.0% | |
| ACCCTCTTATTAGAACAAGA+GGG | + | chr1_4:36549161-36549180 | None:intergenic | 35.0% | |
| ! | AATCACCTGAGTTTTCTGAA+AGG | + | chr1_4:36549228-36549247 | None:intergenic | 35.0% |
| TCTATATCATGTTCCGCATT+GGG | + | chr1_4:36549365-36549384 | None:intergenic | 35.0% | |
| TTCTATATCATGTTCCGCAT+TGG | + | chr1_4:36549366-36549385 | None:intergenic | 35.0% | |
| ! | AGCTCTGATGTTAGATATGT+CGG | - | chr1_4:36549480-36549499 | Msa0161340:intron | 35.0% |
| ! | TTTGATTTCACTCGATAAGG+AGG | + | chr1_4:36549577-36549596 | None:intergenic | 35.0% |
| ! | GAGTTTGATTTCACTCGATA+AGG | + | chr1_4:36549580-36549599 | None:intergenic | 35.0% |
| ! | TTTAGAGCAATTTCAGCAGT+GGG | + | chr1_4:36549803-36549822 | None:intergenic | 35.0% |
| !!! | TTTTAGAGCAATTTCAGCAG+TGG | + | chr1_4:36549804-36549823 | None:intergenic | 35.0% |
| AAACTATTCCAGCAATCGTT+CGG | - | chr1_4:36549821-36549840 | Msa0161340:intron | 35.0% | |
| AGACATTTATGAGGCAGTTT+AGG | + | chr1_4:36550104-36550123 | None:intergenic | 35.0% | |
| !! | TATACTACAAATGATGGGTG+TGG | - | chr1_4:36550387-36550406 | Msa0161340:CDS | 35.0% |
| TCATGTCAAAAGTCATTTGC+AGG | - | chr1_4:36550426-36550445 | Msa0161340:CDS | 35.0% | |
| TATAAAGCACAAACACTCCT+CGG | - | chr1_4:36550509-36550528 | Msa0161340:intron | 35.0% | |
| TATGTTGAGTGAATTCAGTG+TGG | + | chr1_4:36550923-36550942 | None:intergenic | 35.0% | |
| TAGAGAAGGGAAAATGTGAA+AGG | - | chr1_4:36550974-36550993 | Msa0161340:intron | 35.0% | |
| AAGGTTTGCAAAGTAGAGAA+GGG | - | chr1_4:36550997-36551016 | Msa0161340:intron | 35.0% | |
| ! | TACTTACTACCAGAAGTGTA+TGG | + | chr1_4:36551257-36551276 | None:intergenic | 35.0% |
| TTGTGTTTCAGGAATATCTG+AGG | - | chr1_4:36551310-36551329 | Msa0161340:intron | 35.0% | |
| TTTCAGGAATATCTGAGGAA+GGG | - | chr1_4:36551315-36551334 | Msa0161340:intron | 35.0% | |
| AAAGGATGGAGTACGAAATT+TGG | + | chr1_4:36551460-36551479 | None:intergenic | 35.0% | |
| CTATTTGCATTTGGCTACAA+AGG | + | chr1_4:36551478-36551497 | None:intergenic | 35.0% | |
| GAGGACTAACTATGCTACAA+GGG | + | chr1_4:36548848-36548867 | None:intergenic | 40.0% | |
| AGAGGACTAACTATGCTACA+AGG | + | chr1_4:36548849-36548868 | None:intergenic | 40.0% | |
| TAGCATAGTTAGTCCTCTAG+AGG | - | chr1_4:36548851-36548870 | Msa0161340:CDS | 40.0% | |
| ATTGCTGATATGTCCTCTAG+AGG | + | chr1_4:36548867-36548886 | None:intergenic | 40.0% | |
| ! | GGTTGTTGGTTGATCTTGTT+TGG | + | chr1_4:36549060-36549079 | None:intergenic | 40.0% |
| ACCAACAACCTGCTTCAAAT+TGG | - | chr1_4:36549070-36549089 | Msa0161340:CDS | 40.0% | |
| CCAACAACCTGCTTCAAATT+GGG | - | chr1_4:36549071-36549090 | Msa0161340:CDS | 40.0% | |
| ! | TTCAGAACCCAATTTGAAGC+AGG | + | chr1_4:36549081-36549100 | None:intergenic | 40.0% |
| CACCCTCTTATTAGAACAAG+AGG | + | chr1_4:36549162-36549181 | None:intergenic | 40.0% | |
| ! | TTGTTCTAATAAGAGGGTGC+TGG | - | chr1_4:36549163-36549182 | Msa0161340:intron | 40.0% |
| GGTATAGATGTATCCCAATG+CGG | - | chr1_4:36549349-36549368 | Msa0161340:intron | 40.0% | |
| ! | TTCTTTGTTTGTCGAAGTCG+CGG | - | chr1_4:36549603-36549622 | Msa0161340:intron | 40.0% |
| TAGCGGGAGTTAATTGTTGT+TGG | - | chr1_4:36549850-36549869 | Msa0161340:intron | 40.0% | |
| GACAAACAATCTTCACCTTG+TGG | - | chr1_4:36550153-36550172 | Msa0161340:intron | 40.0% | |
| ATTATTGTCAACCAGCTTGG+TGG | - | chr1_4:36550249-36550268 | Msa0161340:intron | 40.0% | |
| TTAATCAGAGGCAAAGCCTA+AGG | - | chr1_4:36550363-36550382 | Msa0161340:CDS | 40.0% | |
| CACACGCACAAATGTTTGAA+AGG | - | chr1_4:36550717-36550736 | Msa0161340:intron | 40.0% | |
| GAAGGGAAAATGTGAAAGGA+AGG | - | chr1_4:36550978-36550997 | Msa0161340:intron | 40.0% | |
| GAAGGTTTGCAAAGTAGAGA+AGG | - | chr1_4:36550996-36551015 | Msa0161340:intron | 40.0% | |
| !! | TGCATTTTAATATGCAGGCG+CGG | + | chr1_4:36551129-36551148 | None:intergenic | 40.0% |
| CCTCTCGAGTATAGTTCAAT+TGG | + | chr1_4:36551186-36551205 | None:intergenic | 40.0% | |
| CCAATTGAACTATACTCGAG+AGG | - | chr1_4:36551183-36551202 | Msa0161340:intron | 40.0% | |
| GTTTCAGGAATATCTGAGGA+AGG | - | chr1_4:36551314-36551333 | Msa0161340:intron | 40.0% | |
| TTGCATTTGGCTACAAAGGA+TGG | + | chr1_4:36551474-36551493 | None:intergenic | 40.0% | |
| ATCACGACAACTACAACTTG+AGG | - | chr1_4:36551502-36551521 | Msa0161340:CDS | 40.0% | |
| AACTACAACTTGAGGTTGAG+AGG | - | chr1_4:36551510-36551529 | Msa0161340:CDS | 40.0% | |
| GAGCAATAAACGACAATTCG+AGG | - | chr1_4:36551532-36551551 | Msa0161340:CDS | 40.0% | |
| !! | ATCGGTCATTTTCTCCTGTT+TGG | + | chr1_4:36551770-36551789 | None:intergenic | 40.0% |
| ! | CCCAATTTGAAGCAGGTTGT+TGG | + | chr1_4:36549074-36549093 | None:intergenic | 45.0% |
| ! | GTGATTTTTCCCCAGATCAG+AGG | - | chr1_4:36549189-36549208 | Msa0161340:intron | 45.0% |
| TTTCATGGGACCTCTGATCT+GGG | + | chr1_4:36549202-36549221 | None:intergenic | 45.0% | |
| ATTTCATGGGACCTCTGATC+TGG | + | chr1_4:36549203-36549222 | None:intergenic | 45.0% | |
| TTCACTCGATAAGGAGGTTG+AGG | + | chr1_4:36549571-36549590 | None:intergenic | 45.0% | |
| TAGAAAAGCCGAACGATTGC+TGG | + | chr1_4:36549832-36549851 | None:intergenic | 45.0% | |
| ! | CAATCGTTCGGCTTTTCTAG+CGG | - | chr1_4:36549833-36549852 | Msa0161340:intron | 45.0% |
| !! | AATCGTTCGGCTTTTCTAGC+GGG | - | chr1_4:36549834-36549853 | Msa0161340:intron | 45.0% |
| GATTAGACGTGTCCTGGTAT+CGG | - | chr1_4:36550531-36550550 | Msa0161340:intron | 45.0% | |
| !! | TATATGTGTCGGTGTCGTGT+CGG | + | chr1_4:36550576-36550595 | None:intergenic | 45.0% |
| !! | CATTTTAATATGCAGGCGCG+GGG | + | chr1_4:36551127-36551146 | None:intergenic | 45.0% |
| !! | GCATTTTAATATGCAGGCGC+GGG | + | chr1_4:36551128-36551147 | None:intergenic | 45.0% |
| AGGAAGGGCAGATAACAGAT+GGG | - | chr1_4:36551330-36551349 | Msa0161340:intron | 45.0% | |
| GATGCAGCGAAATTTGCAAC+TGG | - | chr1_4:36551687-36551706 | Msa0161340:CDS | 45.0% | |
| !! | TATTATATCATAAAAATAAA+TGG | - | chr1_4:36549454-36549473 | Msa0161340:intron | 5.0% |
| TTCATGGGACCTCTGATCTG+GGG | + | chr1_4:36549201-36549220 | None:intergenic | 50.0% | |
| TTTGTTTGTCGAAGTCGCGG+TGG | - | chr1_4:36549606-36549625 | Msa0161340:intron | 50.0% | |
| TTGTTTGTCGAAGTCGCGGT+GGG | - | chr1_4:36549607-36549626 | Msa0161340:intron | 50.0% | |
| GAGGAAGGGCAGATAACAGA+TGG | - | chr1_4:36551329-36551348 | Msa0161340:intron | 50.0% | |
| TACTTTCTGGGCCACCAAGC+TGG | + | chr1_4:36550263-36550282 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGACGTGTCC+TGG | - | chr1_4:36550525-36550544 | Msa0161340:intron | 55.0% |
| ACCAGGACACGTCTAATCCG+AGG | + | chr1_4:36550529-36550548 | None:intergenic | 55.0% | |
| TACGACACGTGTCCGATACC+AGG | + | chr1_4:36550546-36550565 | None:intergenic | 55.0% | |
| CAGGCGCGGGGTTCAAACTT+TGG | + | chr1_4:36551115-36551134 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36548804 | 36551804 | 36548804 | ID=Msa0161340;Name=Msa0161340 |
| chr1_4 | mRNA | 36548804 | 36551804 | 36548804 | ID=Msa0161340-mRNA-1;Parent=Msa0161340;Name=Msa0161340-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0|0|1|1|1|6|0|297 |
| chr1_4 | exon | 36551367 | 36551804 | 36551367 | ID=Msa0161340-mRNA-1:exon:10780;Parent=Msa0161340-mRNA-1 |
| chr1_4 | exon | 36550329 | 36550476 | 36550329 | ID=Msa0161340-mRNA-1:exon:10779;Parent=Msa0161340-mRNA-1 |
| chr1_4 | exon | 36550172 | 36550237 | 36550172 | ID=Msa0161340-mRNA-1:exon:10778;Parent=Msa0161340-mRNA-1 |
| chr1_4 | exon | 36549233 | 36549287 | 36549233 | ID=Msa0161340-mRNA-1:exon:10777;Parent=Msa0161340-mRNA-1 |
| chr1_4 | exon | 36549055 | 36549124 | 36549055 | ID=Msa0161340-mRNA-1:exon:10776;Parent=Msa0161340-mRNA-1 |
| chr1_4 | exon | 36548804 | 36548920 | 36548804 | ID=Msa0161340-mRNA-1:exon:10775;Parent=Msa0161340-mRNA-1 |
| chr1_4 | CDS | 36551367 | 36551804 | 36551367 | ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1 |
| chr1_4 | CDS | 36550329 | 36550476 | 36550329 | ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1 |
| chr1_4 | CDS | 36550172 | 36550237 | 36550172 | ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1 |
| chr1_4 | CDS | 36549233 | 36549287 | 36549233 | ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1 |
| chr1_4 | CDS | 36549055 | 36549124 | 36549055 | ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1 |
| chr1_4 | CDS | 36548804 | 36548920 | 36548804 | ID=Msa0161340-mRNA-1:cds;Parent=Msa0161340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
