Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161420 | XP_024638802.1 | 94.643 | 392 | 11 | 4 | 1 | 383 | 1 | 391 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161420 | sp|Q9SVY1|ZWIP2_ARATH | 59.113 | 406 | 120 | 9 | 1 | 383 | 1 | 383 | 2.63e-141 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161420 | A0A396JLH8 | 94.643 | 392 | 11 | 4 | 1 | 383 | 1 | 391 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0161420 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161420 | MtrunA17_Chr1g0173841 | 94.643 | 392 | 11 | 4 | 1 | 383 | 1 | 391 | 0.0 | 759 |
| Msa0161420 | MtrunA17_Chr7g0258011 | 73.490 | 298 | 57 | 6 | 87 | 378 | 66 | 347 | 2.91e-156 | 443 |
| Msa0161420 | MtrunA17_Chr8g0352011 | 61.889 | 307 | 83 | 5 | 87 | 380 | 54 | 339 | 4.98e-133 | 384 |
| Msa0161420 | MtrunA17_Chr2g0328921 | 64.094 | 298 | 78 | 6 | 88 | 382 | 44 | 315 | 5.98e-127 | 368 |
| Msa0161420 | MtrunA17_Chr2g0321291 | 61.885 | 244 | 78 | 4 | 136 | 378 | 76 | 305 | 1.07e-107 | 318 |
| Msa0161420 | MtrunA17_Chr5g0422571 | 64.935 | 231 | 52 | 4 | 139 | 367 | 59 | 262 | 1.28e-105 | 313 |
| Msa0161420 | MtrunA17_Chr4g0026521 | 62.553 | 235 | 66 | 3 | 145 | 376 | 75 | 290 | 1.73e-103 | 307 |
| Msa0161420 | MtrunA17_Chr1g0198651 | 74.419 | 172 | 41 | 1 | 204 | 372 | 99 | 270 | 8.41e-97 | 290 |
| Msa0161420 | MtrunA17_Chr4g0053341 | 60.173 | 231 | 56 | 3 | 135 | 358 | 24 | 225 | 1.03e-93 | 280 |
| Msa0161420 | MtrunA17_Chr1g0200421 | 37.195 | 164 | 92 | 5 | 214 | 369 | 245 | 405 | 7.50e-24 | 102 |
| Msa0161420 | MtrunA17_Chr2g0320341 | 37.584 | 149 | 84 | 4 | 222 | 363 | 246 | 392 | 1.49e-21 | 95.5 |
| Msa0161420 | MtrunA17_Chr1g0199101 | 35.374 | 147 | 83 | 6 | 207 | 351 | 63 | 199 | 9.35e-20 | 90.9 |
| Msa0161420 | MtrunA17_Chr7g0268961 | 34.437 | 151 | 83 | 5 | 208 | 351 | 33 | 174 | 1.08e-19 | 90.5 |
| Msa0161420 | MtrunA17_Chr4g0029521 | 35.971 | 139 | 80 | 4 | 214 | 351 | 61 | 191 | 1.56e-19 | 90.1 |
| Msa0161420 | MtrunA17_Chr1g0151351 | 35.915 | 142 | 80 | 5 | 212 | 351 | 62 | 194 | 1.59e-19 | 89.7 |
| Msa0161420 | MtrunA17_Chr1g0210821 | 34.932 | 146 | 85 | 5 | 207 | 351 | 60 | 196 | 1.83e-19 | 90.1 |
| Msa0161420 | MtrunA17_Chr1g0162971 | 36.691 | 139 | 78 | 5 | 214 | 351 | 64 | 193 | 1.88e-19 | 89.7 |
| Msa0161420 | MtrunA17_Chr1g0181381 | 31.977 | 172 | 100 | 5 | 207 | 377 | 54 | 209 | 2.40e-19 | 89.7 |
| Msa0161420 | MtrunA17_Chr1g0163001 | 34.932 | 146 | 85 | 5 | 207 | 351 | 59 | 195 | 3.13e-19 | 89.4 |
| Msa0161420 | MtrunA17_Chr1g0191991 | 32.948 | 173 | 90 | 7 | 208 | 372 | 74 | 228 | 3.23e-19 | 89.4 |
| Msa0161420 | MtrunA17_Chr1g0185121 | 35.915 | 142 | 80 | 5 | 212 | 351 | 61 | 193 | 3.80e-19 | 88.6 |
| Msa0161420 | MtrunA17_Chr2g0326381 | 34.932 | 146 | 86 | 4 | 207 | 351 | 48 | 185 | 8.62e-19 | 87.4 |
| Msa0161420 | MtrunA17_Chr2g0330171 | 33.333 | 147 | 86 | 5 | 207 | 351 | 62 | 198 | 1.30e-18 | 87.0 |
| Msa0161420 | MtrunA17_Chr8g0342421 | 34.286 | 140 | 80 | 5 | 214 | 351 | 85 | 214 | 1.56e-18 | 87.0 |
| Msa0161420 | MtrunA17_Chr7g0263941 | 35.374 | 147 | 83 | 6 | 207 | 351 | 50 | 186 | 1.70e-18 | 86.3 |
| Msa0161420 | MtrunA17_Chr3g0123941 | 36.025 | 161 | 93 | 7 | 222 | 378 | 139 | 293 | 4.57e-18 | 84.3 |
| Msa0161420 | MtrunA17_Chr8g0382121 | 37.143 | 140 | 81 | 6 | 222 | 356 | 127 | 264 | 1.06e-17 | 83.2 |
| Msa0161420 | MtrunA17_Chr4g0040571 | 30.857 | 175 | 103 | 5 | 207 | 380 | 55 | 212 | 2.62e-17 | 83.6 |
| Msa0161420 | MtrunA17_Chr8g0373541 | 34.532 | 139 | 81 | 4 | 214 | 351 | 56 | 185 | 3.51e-17 | 83.2 |
| Msa0161420 | MtrunA17_Chr2g0324991 | 33.803 | 142 | 84 | 5 | 207 | 346 | 8 | 141 | 5.96e-16 | 74.7 |
| Msa0161420 | MtrunA17_Chr3g0141431 | 31.655 | 139 | 87 | 3 | 212 | 349 | 43 | 174 | 6.95e-15 | 75.5 |
| Msa0161420 | MtrunA17_Chr8g0375521 | 29.834 | 181 | 104 | 7 | 182 | 347 | 6 | 178 | 4.90e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161420 | AT3G57670.1 | 59.113 | 406 | 120 | 9 | 1 | 383 | 1 | 383 | 2.68e-142 | 409 |
| Msa0161420 | AT1G51220.1 | 54.728 | 349 | 126 | 7 | 40 | 375 | 8 | 337 | 2.57e-127 | 370 |
| Msa0161420 | AT3G20880.1 | 56.083 | 337 | 118 | 10 | 50 | 375 | 93 | 410 | 2.99e-118 | 349 |
| Msa0161420 | AT1G13290.1 | 66.818 | 220 | 42 | 4 | 143 | 360 | 53 | 243 | 7.32e-102 | 304 |
| Msa0161420 | AT1G08290.1 | 58.091 | 241 | 91 | 4 | 138 | 368 | 92 | 332 | 5.74e-99 | 298 |
| Msa0161420 | AT1G34790.1 | 61.039 | 231 | 76 | 1 | 144 | 374 | 83 | 299 | 1.02e-96 | 291 |
| Msa0161420 | AT1G34370.3 | 38.776 | 147 | 79 | 4 | 214 | 351 | 28 | 172 | 9.34e-25 | 102 |
| Msa0161420 | AT1G34370.2 | 38.776 | 147 | 79 | 4 | 214 | 351 | 238 | 382 | 2.57e-24 | 104 |
| Msa0161420 | AT1G34370.1 | 38.776 | 147 | 79 | 4 | 214 | 351 | 238 | 382 | 2.57e-24 | 104 |
| Msa0161420 | AT5G22890.1 | 39.865 | 148 | 76 | 5 | 222 | 359 | 219 | 363 | 2.68e-22 | 97.4 |
| Msa0161420 | AT5G03150.1 | 32.353 | 170 | 98 | 5 | 214 | 382 | 76 | 229 | 8.93e-20 | 91.3 |
| Msa0161420 | AT1G55110.3 | 36.620 | 142 | 79 | 5 | 212 | 351 | 84 | 216 | 1.34e-19 | 90.5 |
| Msa0161420 | AT1G55110.1 | 36.620 | 142 | 79 | 5 | 212 | 351 | 84 | 216 | 1.34e-19 | 90.5 |
| Msa0161420 | AT1G55110.2 | 36.620 | 142 | 79 | 5 | 212 | 351 | 84 | 216 | 1.34e-19 | 90.5 |
| Msa0161420 | AT2G02070.2 | 34.194 | 155 | 92 | 4 | 198 | 351 | 59 | 204 | 1.97e-19 | 90.5 |
| Msa0161420 | AT2G02070.1 | 34.194 | 155 | 92 | 4 | 198 | 351 | 59 | 204 | 1.97e-19 | 90.5 |
| Msa0161420 | AT2G02080.1 | 35.461 | 141 | 81 | 4 | 212 | 351 | 75 | 206 | 3.61e-19 | 89.4 |
| Msa0161420 | AT2G02080.4 | 35.461 | 141 | 81 | 4 | 212 | 351 | 75 | 206 | 3.61e-19 | 89.4 |
| Msa0161420 | AT2G02080.5 | 35.461 | 141 | 81 | 4 | 212 | 351 | 75 | 206 | 3.61e-19 | 89.4 |
| Msa0161420 | AT2G02080.3 | 35.461 | 141 | 81 | 4 | 212 | 351 | 75 | 206 | 3.61e-19 | 89.4 |
| Msa0161420 | AT1G14580.1 | 35.374 | 147 | 83 | 5 | 207 | 351 | 69 | 205 | 1.22e-18 | 87.8 |
| Msa0161420 | AT1G14580.2 | 35.374 | 147 | 83 | 5 | 207 | 351 | 69 | 205 | 1.22e-18 | 87.8 |
| Msa0161420 | AT1G14580.3 | 35.374 | 147 | 83 | 5 | 207 | 351 | 83 | 219 | 1.43e-18 | 87.4 |
| Msa0161420 | AT2G02080.6 | 36.232 | 138 | 78 | 4 | 215 | 351 | 1 | 129 | 1.75e-18 | 87.0 |
| Msa0161420 | AT2G02080.2 | 36.232 | 138 | 78 | 4 | 215 | 351 | 1 | 129 | 1.75e-18 | 87.0 |
| Msa0161420 | AT5G66730.1 | 35.915 | 142 | 79 | 6 | 212 | 351 | 53 | 184 | 6.97e-18 | 85.5 |
| Msa0161420 | AT3G45260.2 | 35.971 | 139 | 80 | 4 | 214 | 351 | 62 | 192 | 1.88e-17 | 84.0 |
| Msa0161420 | AT3G45260.1 | 35.971 | 139 | 80 | 4 | 214 | 351 | 62 | 192 | 1.88e-17 | 84.0 |
| Msa0161420 | AT5G60470.2 | 33.813 | 139 | 83 | 4 | 214 | 351 | 67 | 197 | 2.70e-17 | 83.6 |
| Msa0161420 | AT5G60470.3 | 33.813 | 139 | 83 | 4 | 214 | 351 | 63 | 193 | 2.76e-17 | 83.6 |
| Msa0161420 | AT5G60470.1 | 33.813 | 139 | 83 | 4 | 214 | 351 | 58 | 188 | 2.81e-17 | 83.6 |
| Msa0161420 | AT5G44160.1 | 33.813 | 139 | 82 | 4 | 214 | 351 | 60 | 189 | 4.04e-17 | 83.2 |
| Msa0161420 | AT5G44160.2 | 33.813 | 139 | 82 | 4 | 214 | 351 | 21 | 150 | 4.46e-17 | 82.8 |
| Msa0161420 | AT1G03840.2 | 33.562 | 146 | 87 | 5 | 207 | 351 | 55 | 191 | 4.90e-17 | 83.2 |
| Msa0161420 | AT1G03840.1 | 32.192 | 146 | 89 | 4 | 207 | 351 | 57 | 193 | 5.59e-17 | 82.8 |
| Msa0161420 | AT3G13810.2 | 32.877 | 146 | 89 | 4 | 207 | 351 | 87 | 224 | 1.43e-16 | 81.6 |
| Msa0161420 | AT3G13810.4 | 32.877 | 146 | 89 | 4 | 207 | 351 | 86 | 223 | 1.47e-16 | 81.6 |
| Msa0161420 | AT3G13810.1 | 32.877 | 146 | 89 | 4 | 207 | 351 | 86 | 223 | 1.47e-16 | 81.6 |
| Msa0161420 | AT3G13810.5 | 32.877 | 146 | 89 | 4 | 207 | 351 | 81 | 218 | 1.60e-16 | 81.6 |
| Msa0161420 | AT3G13810.3 | 32.877 | 146 | 89 | 4 | 207 | 351 | 73 | 210 | 1.71e-16 | 81.3 |
| Msa0161420 | AT3G13810.6 | 32.877 | 146 | 89 | 4 | 207 | 351 | 67 | 204 | 1.86e-16 | 81.3 |
| Msa0161420 | AT3G50700.1 | 33.333 | 141 | 84 | 4 | 212 | 351 | 55 | 186 | 2.43e-16 | 80.9 |
| Msa0161420 | AT4G02670.1 | 32.192 | 146 | 90 | 3 | 207 | 351 | 69 | 206 | 2.61e-16 | 80.5 |
| Msa0161420 | AT4G02670.2 | 32.192 | 146 | 90 | 3 | 207 | 351 | 71 | 208 | 2.67e-16 | 80.5 |
Find 84 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAATCTTGCACTTTAA+TGG | 0.133562 | 1_4:-36740230 | Msa0161420:CDS |
| ATTATTGAATTGGAAGAAAT+TGG | 0.185958 | 1_4:+36740555 | None:intergenic |
| ACTCCTTCTCAGATTCTTAT+TGG | 0.201568 | 1_4:-36739962 | Msa0161420:CDS |
| TGTGTACCTCTTAGAGATTC+TGG | 0.222352 | 1_4:+36737412 | None:intergenic |
| AAAGATCATATAAGAGCTTT+TGG | 0.231134 | 1_4:-36737127 | Msa0161420:CDS |
| ATGAAATTGTGAAGATAATT+AGG | 0.241835 | 1_4:+36740472 | None:intergenic |
| TCTTTCAATGGCTTTGCTCT+TGG | 0.301885 | 1_4:+36737322 | None:intergenic |
| GGGAGTGGTCATGCTGCTTA+TGG | 0.311784 | 1_4:-36737106 | Msa0161420:CDS |
| CTTTCAATGGCTTTGCTCTT+GGG | 0.319894 | 1_4:+36737323 | None:intergenic |
| CACTTCAAACACATTATAAA+AGG | 0.323447 | 1_4:-36737291 | Msa0161420:CDS |
| CATGTTGTTGTATCTGTTGA+AGG | 0.332315 | 1_4:+36739904 | None:intergenic |
| GTGACTGTTGCACTTCATAT+AGG | 0.339638 | 1_4:-36740157 | Msa0161420:CDS |
| TGACTGTTGCACTTCATATA+GGG | 0.360463 | 1_4:-36740156 | Msa0161420:CDS |
| ACCCTTGTTAAGTGATCTAT+TGG | 0.367615 | 1_4:+36740000 | None:intergenic |
| ATTGTTGTTCACCAGGTTGC+AGG | 0.377391 | 1_4:-36737360 | Msa0161420:CDS |
| CCTTGCTATTGTTGTTCACC+AGG | 0.381067 | 1_4:-36737367 | Msa0161420:CDS |
| CATGCTGCTTATGGAATTGA+TGG | 0.388035 | 1_4:-36737097 | Msa0161420:CDS |
| GAAGAAGGGTAATGGTTTGT+TGG | 0.403794 | 1_4:+36740523 | None:intergenic |
| TAGTCATAAAGTAGAAGAAA+AGG | 0.405108 | 1_4:-36740194 | Msa0161420:CDS |
| GGATGGTTGTGGTGGGATGA+AGG | 0.410709 | 1_4:+36740493 | None:intergenic |
| ATGATGATGGTAGTGGAAAA+AGG | 0.413174 | 1_4:+36740420 | None:intergenic |
| AAGCTTTGGTATTGTCTTTG+TGG | 0.415419 | 1_4:-36737178 | Msa0161420:CDS |
| GATGGTTGTGGTGGGATGAA+GGG | 0.422119 | 1_4:+36740494 | None:intergenic |
| GATGAGAAGAAATTTGAGTA+AGG | 0.430003 | 1_4:+36740577 | None:intergenic |
| CTTATCCTCAGATGCATATG+TGG | 0.432175 | 1_4:-36737462 | Msa0161420:intron |
| AACAGTTCTCAGGCAATTTG+TGG | 0.435474 | 1_4:+36740680 | None:intergenic |
| AGAAGAACTGTGGAAAGCTT+TGG | 0.443136 | 1_4:-36737192 | Msa0161420:CDS |
| AGTGTTCTGAAATCTTTCAA+TGG | 0.447098 | 1_4:+36737310 | None:intergenic |
| ATCTTGCACTTTAATGGATG+TGG | 0.454122 | 1_4:-36740224 | Msa0161420:CDS |
| TCTTGTTCAACTTCAGAAGC+AGG | 0.458660 | 1_4:+36737055 | None:intergenic |
| TGAGAGTGGGAACAGTTCTC+AGG | 0.460997 | 1_4:+36740670 | None:intergenic |
| AATTTATTAACTGACTATGA+TGG | 0.461942 | 1_4:-36736943 | Msa0161420:three_prime_UTR |
| CACTTAACAAGGGTCAGTAT+TGG | 0.467580 | 1_4:-36739991 | Msa0161420:CDS |
| TATTAGCGACGATTCCTCTT+CGG | 0.484816 | 1_4:-36740038 | Msa0161420:CDS |
| CTAAGAGGTACACAACCAAC+AGG | 0.500045 | 1_4:-36737403 | Msa0161420:CDS |
| ATCTCAGAAGAACTAGGGCT+TGG | 0.503709 | 1_4:+36740130 | None:intergenic |
| GGTTTGAAGAAGAAGGGTAA+TGG | 0.512390 | 1_4:+36740515 | None:intergenic |
| AGTTCTCAAATTTGAAACCA+TGG | 0.519692 | 1_4:+36736907 | None:intergenic |
| GGAAGATGGTGAAGAAGAAG+AGG | 0.526711 | 1_4:+36740357 | None:intergenic |
| GTATAGTGTTGAGGTGAGAG+TGG | 0.527857 | 1_4:+36740656 | None:intergenic |
| AGCGACGATTCCTCTTCGGC+TGG | 0.529279 | 1_4:-36740034 | Msa0161420:CDS |
| CAGATGCATATGTGGGGACA+TGG | 0.531260 | 1_4:-36737454 | Msa0161420:CDS |
| CATGGATCACAATACAGAAA+AGG | 0.532079 | 1_4:-36737436 | Msa0161420:CDS |
| TATGTGTAGAAAATGTGGTA+AGG | 0.535524 | 1_4:-36737248 | Msa0161420:CDS |
| TTATCCTCAGATGCATATGT+GGG | 0.539918 | 1_4:-36737461 | Msa0161420:intron |
| GTTGCAATCTCAGAAGAACT+AGG | 0.540111 | 1_4:+36740124 | None:intergenic |
| ATAAGAATCTGAGAAGGAGT+AGG | 0.541391 | 1_4:+36739965 | None:intergenic |
| GAAGATAATTAGGATGGTTG+TGG | 0.543497 | 1_4:+36740482 | None:intergenic |
| GATGAAGGGTTTGAAGAAGA+AGG | 0.545010 | 1_4:+36740508 | None:intergenic |
| GATAATTAGGATGGTTGTGG+TGG | 0.547796 | 1_4:+36740485 | None:intergenic |
| ATGAGAAGAAATTTGAGTAA+GGG | 0.549996 | 1_4:+36740578 | None:intergenic |
| TATAGTGTTGAGGTGAGAGT+GGG | 0.552979 | 1_4:+36740657 | None:intergenic |
| CGATAAGACTCAAAAGTGGA+AGG | 0.561931 | 1_4:+36740317 | None:intergenic |
| ATGAAGGGTTTGAAGAAGAA+GGG | 0.562956 | 1_4:+36740509 | None:intergenic |
| GAAGAAAAGGAAGATCATGA+AGG | 0.566975 | 1_4:-36740181 | Msa0161420:CDS |
| ATGCAGTTGTAGTTTGAAGA+TGG | 0.571936 | 1_4:+36740389 | None:intergenic |
| TCAATGTTGTTCCTGCAACC+TGG | 0.573538 | 1_4:+36737349 | None:intergenic |
| TAAGAATCTGAGAAGGAGTA+GGG | 0.573637 | 1_4:+36739966 | None:intergenic |
| AAAGGACCAGAATCTCTAAG+AGG | 0.574044 | 1_4:-36737418 | Msa0161420:CDS |
| CACATTATAAAAGGAAACAT+GGG | 0.574183 | 1_4:-36737282 | Msa0161420:CDS |
| AAGGAAAAGGTATAGTGTTG+AGG | 0.576256 | 1_4:+36740647 | None:intergenic |
| ACACATTATAAAAGGAAACA+TGG | 0.579095 | 1_4:-36737283 | Msa0161420:CDS |
| CACAACCAACAGGTATGCTA+AGG | 0.584031 | 1_4:-36737393 | Msa0161420:CDS |
| TGTTATTGTTGAAAGTTGTG+TGG | 0.590691 | 1_4:+36740446 | None:intergenic |
| GTAGCGATAAGACTCAAAAG+TGG | 0.590822 | 1_4:+36740313 | None:intergenic |
| TTGCAATCTCAGAAGAACTA+GGG | 0.593596 | 1_4:+36740125 | None:intergenic |
| AAAGGAAGAATATGAAGATG+AGG | 0.594322 | 1_4:-36740287 | Msa0161420:CDS |
| ATAACATAATATAATTCACT+TGG | 0.595694 | 1_4:+36736976 | None:intergenic |
| TTAAAGTGCAAGATTGATGA+TGG | 0.612972 | 1_4:+36740233 | None:intergenic |
| ATGGATATATATAATAGCCA+TGG | 0.615481 | 1_4:-36736924 | Msa0161420:three_prime_UTR |
| GATAAGACTCAAAAGTGGAA+GGG | 0.617453 | 1_4:+36740318 | None:intergenic |
| GGAAGCCTTAGCATACCTGT+TGG | 0.618027 | 1_4:+36737388 | None:intergenic |
| TACCAATAGATCACTTAACA+AGG | 0.618619 | 1_4:-36740002 | Msa0161420:CDS |
| AATTGTGAAGATAATTAGGA+TGG | 0.628754 | 1_4:+36740476 | None:intergenic |
| CAACAGATACAACAACATGC+AGG | 0.634469 | 1_4:-36739900 | Msa0161420:intron |
| ATAATTAGGATGGTTGTGGT+GGG | 0.636065 | 1_4:+36740486 | None:intergenic |
| TCTTCACTACTGAGTCTGAG+TGG | 0.642115 | 1_4:+36737024 | None:intergenic |
| GGACCAATAAGAATCTGAGA+AGG | 0.643048 | 1_4:+36739959 | None:intergenic |
| ACAGGACAAGAGAACTGTGT+AGG | 0.644430 | 1_4:+36739938 | None:intergenic |
| AGAACTCATGAGAAGAACTG+TGG | 0.653790 | 1_4:-36737202 | Msa0161420:CDS |
| CCTGGTGAACAACAATAGCA+AGG | 0.660333 | 1_4:+36737367 | None:intergenic |
| TGCAAGATTGATGATGGTGA+TGG | 0.677587 | 1_4:+36740239 | None:intergenic |
| ACCAATAGATCACTTAACAA+GGG | 0.699637 | 1_4:-36740001 | Msa0161420:CDS |
| TATCCTCAGATGCATATGTG+GGG | 0.710095 | 1_4:-36737460 | Msa0161420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATTATTATTATTGAAT+TGG | + | chr1_4:36737048-36737067 | None:intergenic | 10.0% |
| !!! | ATAAGAAAAAATTATCTTTT+TGG | - | chr1_4:36738270-36738289 | Msa0161420:intron | 10.0% |
| !! | TTAATATATTATCATTTACT+TGG | + | chr1_4:36738469-36738488 | None:intergenic | 10.0% |
| !! | TATAAATTACATTAAATTTG+AGG | - | chr1_4:36738967-36738986 | Msa0161420:intron | 10.0% |
| !!! | TTATAAATTTCATTAATTTG+AGG | - | chr1_4:36739019-36739038 | Msa0161420:intron | 10.0% |
| !! | ATTATTTACAATTAAATAGA+AGG | + | chr1_4:36739697-36739716 | None:intergenic | 10.0% |
| !! | TTCTATTTAATTGTAAATAA+TGG | - | chr1_4:36739696-36739715 | Msa0161420:intron | 10.0% |
| !!! | AAATAATGGTTTATATATTT+TGG | - | chr1_4:36739710-36739729 | Msa0161420:intron | 10.0% |
| !! | AAATAGAAAAAGAAAAGAAA+AGG | + | chr1_4:36736965-36736984 | None:intergenic | 15.0% |
| !!! | TGAAAACAAATTTAATTTCT+TGG | - | chr1_4:36738042-36738061 | Msa0161420:intron | 15.0% |
| !!! | GAAAACAAATTTAATTTCTT+GGG | - | chr1_4:36738043-36738062 | Msa0161420:intron | 15.0% |
| !! | TTTAATTAATTACACCAATA+TGG | + | chr1_4:36738208-36738227 | None:intergenic | 15.0% |
| !! | AAACAAAAACTATTAATTGT+TGG | + | chr1_4:36738495-36738514 | None:intergenic | 15.0% |
| !!! | ATTATAAATTAACTTGAGAA+AGG | - | chr1_4:36739414-36739433 | Msa0161420:intron | 15.0% |
| !!! | TTATAAATTAACTTGAGAAA+GGG | - | chr1_4:36739415-36739434 | Msa0161420:intron | 15.0% |
| !!! | TTTTATGTGGATTAATAATT+AGG | + | chr1_4:36739862-36739881 | None:intergenic | 15.0% |
| !!! | ATAATAACTTCTTCTTTTTA+AGG | - | chr1_4:36740076-36740095 | Msa0161420:CDS | 15.0% |
| !! | ATAACATAATATAATTCACT+TGG | + | chr1_4:36740617-36740636 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAGAAAAGGAAA+AGG | + | chr1_4:36736959-36736978 | None:intergenic | 20.0% |
| !!! | TCTTTAATTTTTCTCATCAA+TGG | - | chr1_4:36736985-36737004 | Msa0161420:three_prime_UTR | 20.0% |
| !! | ATTATTGAATTGGAAGAAAT+TGG | + | chr1_4:36737038-36737057 | None:intergenic | 20.0% |
| !! | ATGAAATTGTGAAGATAATT+AGG | + | chr1_4:36737121-36737140 | None:intergenic | 20.0% |
| !! | TGGACACTAAATTAATATTA+AGG | + | chr1_4:36737797-36737816 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTAAATTATCAG+CGG | - | chr1_4:36737932-36737951 | Msa0161420:intron | 20.0% |
| !! | AAGAAAAATTTCAAAAGAAG+AGG | + | chr1_4:36738133-36738152 | None:intergenic | 20.0% |
| !!! | GTATTTTTTGCATGATAAAA+TGG | - | chr1_4:36738237-36738256 | Msa0161420:intron | 20.0% |
| !! | ATATGAATTCAGTCTAAAAA+GGG | + | chr1_4:36738528-36738547 | None:intergenic | 20.0% |
| !! | TATATGAATTCAGTCTAAAA+AGG | + | chr1_4:36738529-36738548 | None:intergenic | 20.0% |
| !! | TGTAATGATTATTTAACTCA+AGG | + | chr1_4:36739081-36739100 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAAATGGTGA+AGG | - | chr1_4:36739383-36739402 | Msa0161420:intron | 20.0% |
| !!! | TTTTAACAAAAAATGGTGAA+GGG | - | chr1_4:36739384-36739403 | Msa0161420:intron | 20.0% |
| !!! | CATATCATTTTTGTTTTATG+TGG | + | chr1_4:36739875-36739894 | None:intergenic | 20.0% |
| !! | AAAACTAAAAAAATGTTTGC+TGG | + | chr1_4:36739981-36740000 | None:intergenic | 20.0% |
| !! | AATTTATTAACTGACTATGA+TGG | - | chr1_4:36740647-36740666 | Msa0161420:five_prime_UTR | 20.0% |
| ! | ATGAGAAGAAATTTGAGTAA+GGG | + | chr1_4:36737015-36737034 | None:intergenic | 25.0% |
| ! | AATTGTGAAGATAATTAGGA+TGG | + | chr1_4:36737117-36737136 | None:intergenic | 25.0% |
| ! | TAGTCATAAAGTAGAAGAAA+AGG | - | chr1_4:36737396-36737415 | Msa0161420:CDS | 25.0% |
| !!! | TGTTTTCAGAAGTATGAATT+TGG | + | chr1_4:36738030-36738049 | None:intergenic | 25.0% |
| ! | GATGTTTGACTAATTGTAAT+AGG | - | chr1_4:36738095-36738114 | Msa0161420:intron | 25.0% |
| ! | GAAGAAAAATAGAAAGTGAA+CGG | + | chr1_4:36738156-36738175 | None:intergenic | 25.0% |
| ! | TCTTTGTTCTTTAACCATAT+TGG | - | chr1_4:36738191-36738210 | Msa0161420:intron | 25.0% |
| !! | TCAGATTCTATATATCCTTT+TGG | - | chr1_4:36738315-36738334 | Msa0161420:intron | 25.0% |
| !! | TTAATAGAACTGAATTTTGC+AGG | - | chr1_4:36738427-36738446 | Msa0161420:intron | 25.0% |
| !! | TAATAGAACTGAATTTTGCA+GGG | - | chr1_4:36738428-36738447 | Msa0161420:intron | 25.0% |
| ! | AAGTTCCACATATACATTAA+TGG | - | chr1_4:36738563-36738582 | Msa0161420:intron | 25.0% |
| ! | TATGTCCATTAATGTATATG+TGG | + | chr1_4:36738571-36738590 | None:intergenic | 25.0% |
| ! | AGGGAAATCATTATTAATAG+CGG | - | chr1_4:36739434-36739453 | Msa0161420:intron | 25.0% |
| ! | CATATAAATGTCATGTCAAA+AGG | - | chr1_4:36739567-36739586 | Msa0161420:intron | 25.0% |
| ! | TGCATTCCTAATTAAAATCT+TGG | - | chr1_4:36739893-36739912 | Msa0161420:intron | 25.0% |
| ! | ATTCCTAATTAAAATCTTGG+CGG | - | chr1_4:36739896-36739915 | Msa0161420:intron | 25.0% |
| ! | CACTTCAAACACATTATAAA+AGG | - | chr1_4:36740299-36740318 | Msa0161420:CDS | 25.0% |
| ! | ACACATTATAAAAGGAAACA+TGG | - | chr1_4:36740307-36740326 | Msa0161420:CDS | 25.0% |
| ! | CACATTATAAAAGGAAACAT+GGG | - | chr1_4:36740308-36740327 | Msa0161420:CDS | 25.0% |
| !! | AAAGATCATATAAGAGCTTT+TGG | - | chr1_4:36740463-36740482 | Msa0161420:CDS | 25.0% |
| !! | AAGATCATATAAGAGCTTTT+GGG | - | chr1_4:36740464-36740483 | Msa0161420:CDS | 25.0% |
| ! | ATGGATATATATAATAGCCA+TGG | - | chr1_4:36740666-36740685 | Msa0161420:five_prime_UTR | 25.0% |
| GATGAGAAGAAATTTGAGTA+AGG | + | chr1_4:36737016-36737035 | None:intergenic | 30.0% | |
| TGTTATTGTTGAAAGTTGTG+TGG | + | chr1_4:36737147-36737166 | None:intergenic | 30.0% | |
| AAAGGAAGAATATGAAGATG+AGG | - | chr1_4:36737303-36737322 | Msa0161420:CDS | 30.0% | |
| TTAAAGTGCAAGATTGATGA+TGG | + | chr1_4:36737360-36737379 | None:intergenic | 30.0% | |
| TCATCAATCTTGCACTTTAA+TGG | - | chr1_4:36737360-36737379 | Msa0161420:CDS | 30.0% | |
| TACCAATAGATCACTTAACA+AGG | - | chr1_4:36737588-36737607 | Msa0161420:intron | 30.0% | |
| ACCAATAGATCACTTAACAA+GGG | - | chr1_4:36737589-36737608 | Msa0161420:intron | 30.0% | |
| !!! | GTGCTAAGGTTTTGAAAAAA+AGG | + | chr1_4:36737754-36737773 | None:intergenic | 30.0% |
| TTAAGGAGAAGAAGATCTAT+AGG | + | chr1_4:36737780-36737799 | None:intergenic | 30.0% | |
| TTTAGTGTATTCATATGCGT+CGG | + | chr1_4:36737907-36737926 | None:intergenic | 30.0% | |
| TCTTAAATTATCAGCGGTAT+CGG | - | chr1_4:36737938-36737957 | Msa0161420:intron | 30.0% | |
| GTATGAATTTGGAAGAAAAG+TGG | + | chr1_4:36738019-36738038 | None:intergenic | 30.0% | |
| AACAAAGAAAAATGACCTTG+GGG | + | chr1_4:36738179-36738198 | None:intergenic | 30.0% | |
| GAACAAAGAAAAATGACCTT+GGG | + | chr1_4:36738180-36738199 | None:intergenic | 30.0% | |
| AGAACAAAGAAAAATGACCT+TGG | + | chr1_4:36738181-36738200 | None:intergenic | 30.0% | |
| GAGTTGTTTAATCAACCAAA+AGG | + | chr1_4:36738333-36738352 | None:intergenic | 30.0% | |
| TTTGGTTGATTAAACAACTC+AGG | - | chr1_4:36738333-36738352 | Msa0161420:intron | 30.0% | |
| AGACTTCAATGTTGTACTAA+AGG | + | chr1_4:36738373-36738392 | None:intergenic | 30.0% | |
| AATGTATATGTGGAACTTTC+AGG | + | chr1_4:36738561-36738580 | None:intergenic | 30.0% | |
| ! | TTTTCCATGATACAATTAGC+AGG | + | chr1_4:36738682-36738701 | None:intergenic | 30.0% |
| ! | TCATTAATTTGAGGTGCAAA+AGG | - | chr1_4:36739028-36739047 | Msa0161420:intron | 30.0% |
| TTACAACTAAGTGATCTCTA+TGG | - | chr1_4:36739233-36739252 | Msa0161420:intron | 30.0% | |
| ATAACAATGTCATGTCTTCT+AGG | - | chr1_4:36739596-36739615 | Msa0161420:intron | 30.0% | |
| ACAATTAAATAGAAGGCAAG+CGG | + | chr1_4:36739690-36739709 | None:intergenic | 30.0% | |
| ! | AGTTGCAAAATCAAGTTGTT+AGG | - | chr1_4:36739801-36739820 | Msa0161420:intron | 30.0% |
| ! | GTTGCAAAATCAAGTTGTTA+GGG | - | chr1_4:36739802-36739821 | Msa0161420:intron | 30.0% |
| TTCCTAATTAAAATCTTGGC+GGG | - | chr1_4:36739897-36739916 | Msa0161420:intron | 30.0% | |
| GCAATAATCATCATTGATGA+AGG | + | chr1_4:36739923-36739942 | None:intergenic | 30.0% | |
| !! | AGTGTTCTGAAATCTTTCAA+TGG | + | chr1_4:36740283-36740302 | None:intergenic | 30.0% |
| ! | CCACATTTTCTACACATAAA+AGG | + | chr1_4:36740340-36740359 | None:intergenic | 30.0% |
| ! | CCTTTTATGTGTAGAAAATG+TGG | - | chr1_4:36740337-36740356 | Msa0161420:CDS | 30.0% |
| TATGTGTAGAAAATGTGGTA+AGG | - | chr1_4:36740342-36740361 | Msa0161420:CDS | 30.0% | |
| ! | GTTCTGATTTTAAGCATAAG+CGG | - | chr1_4:36740434-36740453 | Msa0161420:CDS | 30.0% |
| !!! | AATTGATGGTTTTGAAGAAG+AGG | - | chr1_4:36740507-36740526 | Msa0161420:CDS | 30.0% |
| ! | AGTTCTCAAATTTGAAACCA+TGG | + | chr1_4:36740686-36740705 | None:intergenic | 30.0% |
| ! | AAGGAAAAGGTATAGTGTTG+AGG | + | chr1_4:36736946-36736965 | None:intergenic | 35.0% |
| ATGAAGGGTTTGAAGAAGAA+GGG | + | chr1_4:36737084-36737103 | None:intergenic | 35.0% | |
| ATAATTAGGATGGTTGTGGT+GGG | + | chr1_4:36737107-36737126 | None:intergenic | 35.0% | |
| GAAGATAATTAGGATGGTTG+TGG | + | chr1_4:36737111-36737130 | None:intergenic | 35.0% | |
| !! | ATGATGATGGTAGTGGAAAA+AGG | + | chr1_4:36737173-36737192 | None:intergenic | 35.0% |
| ATGCAGTTGTAGTTTGAAGA+TGG | + | chr1_4:36737204-36737223 | None:intergenic | 35.0% | |
| GATAAGACTCAAAAGTGGAA+GGG | + | chr1_4:36737275-36737294 | None:intergenic | 35.0% | |
| ! | GAGTCTTATCGCTACAAAAA+AGG | - | chr1_4:36737285-36737304 | Msa0161420:CDS | 35.0% |
| ! | ATCTTGCACTTTAATGGATG+TGG | - | chr1_4:36737366-36737385 | Msa0161420:CDS | 35.0% |
| GAAGAAAAGGAAGATCATGA+AGG | - | chr1_4:36737409-36737428 | Msa0161420:CDS | 35.0% | |
| TGACTGTTGCACTTCATATA+GGG | - | chr1_4:36737434-36737453 | Msa0161420:CDS | 35.0% | |
| TTGCAATCTCAGAAGAACTA+GGG | + | chr1_4:36737468-36737487 | None:intergenic | 35.0% | |
| ACCCTTGTTAAGTGATCTAT+TGG | + | chr1_4:36737593-36737612 | None:intergenic | 35.0% | |
| TAAGAATCTGAGAAGGAGTA+GGG | + | chr1_4:36737627-36737646 | None:intergenic | 35.0% | |
| ATAAGAATCTGAGAAGGAGT+AGG | + | chr1_4:36737628-36737647 | None:intergenic | 35.0% | |
| ACTCCTTCTCAGATTCTTAT+TGG | - | chr1_4:36737628-36737647 | Msa0161420:intron | 35.0% | |
| ! | TTGAAGGTTTTACAGCAAAC+AGG | + | chr1_4:36737673-36737692 | None:intergenic | 35.0% |
| CATGTTGTTGTATCTGTTGA+AGG | + | chr1_4:36737689-36737708 | None:intergenic | 35.0% | |
| GTAGCTCAATGGTATGAATT+TGG | + | chr1_4:36737817-36737836 | None:intergenic | 35.0% | |
| AGTTGAATGAACCACAAACA+CGG | + | chr1_4:36737986-36738005 | None:intergenic | 35.0% | |
| !! | TTTCTATTTTTCTTCCCCCA+AGG | - | chr1_4:36738161-36738180 | Msa0161420:intron | 35.0% |
| ACAAAGAAAAATGACCTTGG+GGG | + | chr1_4:36738178-36738197 | None:intergenic | 35.0% | |
| AGTTGCATGGCAAAATACAT+AGG | + | chr1_4:36738405-36738424 | None:intergenic | 35.0% | |
| AGTTCTATTAAGCAGTTGCA+TGG | + | chr1_4:36738418-36738437 | None:intergenic | 35.0% | |
| ! | ATATGTGGAACTTTCAGGTA+TGG | + | chr1_4:36738556-36738575 | None:intergenic | 35.0% |
| TCAAGAGGGTTCAATATCTT+TGG | - | chr1_4:36739168-36739187 | Msa0161420:intron | 35.0% | |
| CTCATCAACCTAATGATAGT+GGG | + | chr1_4:36739208-36739227 | None:intergenic | 35.0% | |
| ACTCATCAACCTAATGATAG+TGG | + | chr1_4:36739209-36739228 | None:intergenic | 35.0% | |
| TCTCTATGGAAATAGACAAG+AGG | - | chr1_4:36739247-36739266 | Msa0161420:intron | 35.0% | |
| CTCTATGGAAATAGACAAGA+GGG | - | chr1_4:36739248-36739267 | Msa0161420:intron | 35.0% | |
| CATTTCACAATCAACTCAGT+GGG | + | chr1_4:36739352-36739371 | None:intergenic | 35.0% | |
| TCATTTCACAATCAACTCAG+TGG | + | chr1_4:36739353-36739372 | None:intergenic | 35.0% | |
| !!! | ATTGGTTTTGTCATCCGAAA+AGG | - | chr1_4:36739643-36739662 | Msa0161420:intron | 35.0% |
| CAATTAAATAGAAGGCAAGC+GGG | + | chr1_4:36739689-36739708 | None:intergenic | 35.0% | |
| ! | ATTTTGCAACTTCAAGTGAG+GGG | + | chr1_4:36739792-36739811 | None:intergenic | 35.0% |
| ! | GATTTTGCAACTTCAAGTGA+GGG | + | chr1_4:36739793-36739812 | None:intergenic | 35.0% |
| ! | TGATTTTGCAACTTCAAGTG+AGG | + | chr1_4:36739794-36739813 | None:intergenic | 35.0% |
| !! | TTGTAAGAGTTTTGTCCATG+AGG | + | chr1_4:36739839-36739858 | None:intergenic | 35.0% |
| TTATCCTCAGATGCATATGT+GGG | - | chr1_4:36740129-36740148 | Msa0161420:CDS | 35.0% | |
| CATGGATCACAATACAGAAA+AGG | - | chr1_4:36740154-36740173 | Msa0161420:CDS | 35.0% | |
| ! | AAGCTTTGGTATTGTCTTTG+TGG | - | chr1_4:36740412-36740431 | Msa0161420:CDS | 35.0% |
| AACAGTTCTCAGGCAATTTG+TGG | + | chr1_4:36736913-36736932 | None:intergenic | 40.0% | |
| ! | TATAGTGTTGAGGTGAGAGT+GGG | + | chr1_4:36736936-36736955 | None:intergenic | 40.0% |
| ! | GAAGAAGGGTAATGGTTTGT+TGG | + | chr1_4:36737070-36737089 | None:intergenic | 40.0% |
| GGTTTGAAGAAGAAGGGTAA+TGG | + | chr1_4:36737078-36737097 | None:intergenic | 40.0% | |
| GATGAAGGGTTTGAAGAAGA+AGG | + | chr1_4:36737085-36737104 | None:intergenic | 40.0% | |
| GATAATTAGGATGGTTGTGG+TGG | + | chr1_4:36737108-36737127 | None:intergenic | 40.0% | |
| !! | GATGATGATGATGATGGTAG+TGG | + | chr1_4:36737180-36737199 | None:intergenic | 40.0% |
| ! | GATGGTGATGATGATGATGA+TGG | + | chr1_4:36737186-36737205 | None:intergenic | 40.0% |
| !! | TCTTTTAAAGGAGGGGAAGA+TGG | + | chr1_4:36737250-36737269 | None:intergenic | 40.0% |
| !! | AAGGGCTTCTTTTAAAGGAG+GGG | + | chr1_4:36737257-36737276 | None:intergenic | 40.0% |
| !! | GAAGGGCTTCTTTTAAAGGA+GGG | + | chr1_4:36737258-36737277 | None:intergenic | 40.0% |
| ! | AGTGGAAGGGCTTCTTTTAA+AGG | + | chr1_4:36737262-36737281 | None:intergenic | 40.0% |
| CGATAAGACTCAAAAGTGGA+AGG | + | chr1_4:36737276-36737295 | None:intergenic | 40.0% | |
| GTAGCGATAAGACTCAAAAG+TGG | + | chr1_4:36737280-36737299 | None:intergenic | 40.0% | |
| !! | TGCAAGATTGATGATGGTGA+TGG | + | chr1_4:36737354-36737373 | None:intergenic | 40.0% |
| GTGACTGTTGCACTTCATAT+AGG | - | chr1_4:36737433-36737452 | Msa0161420:CDS | 40.0% | |
| GTTGCAATCTCAGAAGAACT+AGG | + | chr1_4:36737469-36737488 | None:intergenic | 40.0% | |
| TATTAGCGACGATTCCTCTT+CGG | - | chr1_4:36737552-36737571 | Msa0161420:intron | 40.0% | |
| CACTTAACAAGGGTCAGTAT+TGG | - | chr1_4:36737599-36737618 | Msa0161420:intron | 40.0% | |
| GGACCAATAAGAATCTGAGA+AGG | + | chr1_4:36737634-36737653 | None:intergenic | 40.0% | |
| CAACAGATACAACAACATGC+AGG | - | chr1_4:36737690-36737709 | Msa0161420:intron | 40.0% | |
| !! | AGATCTATAGGTTGGTGCTA+AGG | + | chr1_4:36737768-36737787 | None:intergenic | 40.0% |
| GGAGAAGAAGATCTATAGGT+TGG | + | chr1_4:36737776-36737795 | None:intergenic | 40.0% | |
| ! | TTTGCAAAGGTGTAGCTCAA+TGG | + | chr1_4:36737828-36737847 | None:intergenic | 40.0% |
| CAAGCCTGCTAATTGTATCA+TGG | - | chr1_4:36738675-36738694 | Msa0161420:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr1_4:36738782-36738801 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr1_4:36738805-36738824 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr1_4:36738808-36738827 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr1_4:36738816-36738835 | Msa0161420:intron | 40.0% | |
| TCTACGCAGCAATTGTTCTT+TGG | + | chr1_4:36739131-36739150 | None:intergenic | 40.0% | |
| TGACAATGAGACACTTCAAG+AGG | - | chr1_4:36739153-36739172 | Msa0161420:intron | 40.0% | |
| GACAATGAGACACTTCAAGA+GGG | - | chr1_4:36739154-36739173 | Msa0161420:intron | 40.0% | |
| !! | ATGATAGTGGGTTTGAGACT+TGG | + | chr1_4:36739196-36739215 | None:intergenic | 40.0% |
| GTCTCAAACCCACTATCATT+AGG | - | chr1_4:36739197-36739216 | Msa0161420:intron | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | - | chr1_4:36739625-36739644 | Msa0161420:intron | 40.0% | |
| GAGGGGTTCAAATTTCATGT+AGG | + | chr1_4:36739775-36739794 | None:intergenic | 40.0% | |
| CTTATCCTCAGATGCATATG+TGG | - | chr1_4:36740128-36740147 | Msa0161420:CDS | 40.0% | |
| TATCCTCAGATGCATATGTG+GGG | - | chr1_4:36740130-36740149 | Msa0161420:CDS | 40.0% | |
| AAAGGACCAGAATCTCTAAG+AGG | - | chr1_4:36740172-36740191 | Msa0161420:CDS | 40.0% | |
| TGTGTACCTCTTAGAGATTC+TGG | + | chr1_4:36740181-36740200 | None:intergenic | 40.0% | |
| ! | CTTTCAATGGCTTTGCTCTT+GGG | + | chr1_4:36740270-36740289 | None:intergenic | 40.0% |
| ! | TCTTTCAATGGCTTTGCTCT+TGG | + | chr1_4:36740271-36740290 | None:intergenic | 40.0% |
| !! | CTTTTGCTGTAAGAGGAGAT+TGG | - | chr1_4:36740365-36740384 | Msa0161420:CDS | 40.0% |
| AGAACTCATGAGAAGAACTG+TGG | - | chr1_4:36740388-36740407 | Msa0161420:CDS | 40.0% | |
| AGAAGAACTGTGGAAAGCTT+TGG | - | chr1_4:36740398-36740417 | Msa0161420:CDS | 40.0% | |
| !! | CATATAAGAGCTTTTGGGAG+TGG | - | chr1_4:36740469-36740488 | Msa0161420:CDS | 40.0% |
| ! | CATGCTGCTTATGGAATTGA+TGG | - | chr1_4:36740493-36740512 | Msa0161420:CDS | 40.0% |
| TCTTGTTCAACTTCAGAAGC+AGG | + | chr1_4:36740538-36740557 | None:intergenic | 40.0% | |
| ! | GTATAGTGTTGAGGTGAGAG+TGG | + | chr1_4:36736937-36736956 | None:intergenic | 45.0% |
| GGAAGATGGTGAAGAAGAAG+AGG | + | chr1_4:36737236-36737255 | None:intergenic | 45.0% | |
| !! | GGAAGGGCTTCTTTTAAAGG+AGG | + | chr1_4:36737259-36737278 | None:intergenic | 45.0% |
| ATCTCAGAAGAACTAGGGCT+TGG | + | chr1_4:36737463-36737482 | None:intergenic | 45.0% | |
| ACTCAAAAATCCAGCCGAAG+AGG | + | chr1_4:36737569-36737588 | None:intergenic | 45.0% | |
| ACAGGACAAGAGAACTGTGT+AGG | + | chr1_4:36737655-36737674 | None:intergenic | 45.0% | |
| ! | CATAGGAGGAGGTTTTGCAA+AGG | + | chr1_4:36737841-36737860 | None:intergenic | 45.0% |
| CCACAAACACGGACATAACA+TGG | + | chr1_4:36737975-36737994 | None:intergenic | 45.0% | |
| CCATGTTATGTCCGTGTTTG+TGG | - | chr1_4:36737972-36737991 | Msa0161420:intron | 45.0% | |
| ! | GTGGAACTTTCAGGTATGGA+AGG | + | chr1_4:36738552-36738571 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr1_4:36738788-36738807 | None:intergenic | 45.0% |
| CCTCGTGAACACAACATTCA+TGG | + | chr1_4:36739623-36739642 | None:intergenic | 45.0% | |
| CCATGAATGTTGTGTTCACG+AGG | - | chr1_4:36739620-36739639 | Msa0161420:intron | 45.0% | |
| ! | ACTGCGTCGTTAGACCTTTT+CGG | + | chr1_4:36739660-36739679 | None:intergenic | 45.0% |
| AGGGATGAATTGACACCTCA+TGG | - | chr1_4:36739821-36739840 | Msa0161420:intron | 45.0% | |
| !!! | GGCCCGCCAAGATTTTAATT+AGG | + | chr1_4:36739902-36739921 | None:intergenic | 45.0% |
| ! | CTAAGAGGTACACAACCAAC+AGG | - | chr1_4:36740187-36740206 | Msa0161420:CDS | 45.0% |
| CACAACCAACAGGTATGCTA+AGG | - | chr1_4:36740197-36740216 | Msa0161420:CDS | 45.0% | |
| CCTGGTGAACAACAATAGCA+AGG | + | chr1_4:36740226-36740245 | None:intergenic | 45.0% | |
| !! | CCTTGCTATTGTTGTTCACC+AGG | - | chr1_4:36740223-36740242 | Msa0161420:CDS | 45.0% |
| ! | ATTGTTGTTCACCAGGTTGC+AGG | - | chr1_4:36740230-36740249 | Msa0161420:CDS | 45.0% |
| TCAATGTTGTTCCTGCAACC+TGG | + | chr1_4:36740244-36740263 | None:intergenic | 45.0% | |
| !! | GGTAAGGCTTTTGCTGTAAG+AGG | - | chr1_4:36740358-36740377 | Msa0161420:CDS | 45.0% |
| TCTTCACTACTGAGTCTGAG+TGG | + | chr1_4:36740569-36740588 | None:intergenic | 45.0% | |
| !!! | ATAATTTTTTTAACAAAAAA+TGG | - | chr1_4:36739377-36739396 | Msa0161420:intron | 5.0% |
| !!! | TTAATAATGTAATTTTTAAA+AGG | - | chr1_4:36739462-36739481 | Msa0161420:intron | 5.0% |
| !!! | TAATAATGTAATTTTTAAAA+GGG | - | chr1_4:36739463-36739482 | Msa0161420:intron | 5.0% |
| TGAGAGTGGGAACAGTTCTC+AGG | + | chr1_4:36736923-36736942 | None:intergenic | 50.0% | |
| ! | GATGGTTGTGGTGGGATGAA+GGG | + | chr1_4:36737099-36737118 | None:intergenic | 50.0% |
| AAACCTCCTCCTATGAAGCG+CGG | - | chr1_4:36737846-36737865 | Msa0161420:intron | 50.0% | |
| TATGAAGCGCGGACACTCAT+CGG | - | chr1_4:36737857-36737876 | Msa0161420:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr1_4:36738795-36738814 | Msa0161420:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr1_4:36738800-36738819 | None:intergenic | 50.0% | |
| TGTCCCCACATATGCATCTG+AGG | + | chr1_4:36740136-36740155 | None:intergenic | 50.0% | |
| CAGATGCATATGTGGGGACA+TGG | - | chr1_4:36740136-36740155 | Msa0161420:CDS | 50.0% | |
| GGAAGCCTTAGCATACCTGT+TGG | + | chr1_4:36740205-36740224 | None:intergenic | 50.0% | |
| ! | GGATGGTTGTGGTGGGATGA+AGG | + | chr1_4:36737100-36737119 | None:intergenic | 55.0% |
| GATGAGTGTCCGCGCTTCAT+AGG | + | chr1_4:36737858-36737877 | None:intergenic | 55.0% | |
| ! | GGGAGTGGTCATGCTGCTTA+TGG | - | chr1_4:36740484-36740503 | Msa0161420:CDS | 55.0% |
| AGCGACGATTCCTCTTCGGC+TGG | - | chr1_4:36737556-36737575 | Msa0161420:intron | 60.0% | |
| TGTCCGCGCTTCATAGGAGG+AGG | + | chr1_4:36737852-36737871 | None:intergenic | 60.0% | |
| GAGTGTCCGCGCTTCATAGG+AGG | + | chr1_4:36737855-36737874 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36736903 | 36740709 | 36736903 | ID=Msa0161420;Name=Msa0161420 |
| chr1_4 | mRNA | 36736903 | 36740709 | 36736903 | ID=Msa0161420-mRNA-1;Parent=Msa0161420;Name=Msa0161420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|1|1|2|127|383 |
| chr1_4 | exon | 36736903 | 36737473 | 36736903 | ID=Msa0161420-mRNA-1:exon:10844;Parent=Msa0161420-mRNA-1 |
| chr1_4 | exon | 36739901 | 36740709 | 36739901 | ID=Msa0161420-mRNA-1:exon:10843;Parent=Msa0161420-mRNA-1 |
| chr1_4 | five_prime_UTR | 36740609 | 36740709 | 36740609 | ID=Msa0161420-mRNA-1:five_prime_utr;Parent=Msa0161420-mRNA-1 |
| chr1_4 | CDS | 36739901 | 36740608 | 36739901 | ID=Msa0161420-mRNA-1:cds;Parent=Msa0161420-mRNA-1 |
| chr1_4 | CDS | 36737030 | 36737473 | 36737030 | ID=Msa0161420-mRNA-1:cds;Parent=Msa0161420-mRNA-1 |
| chr1_4 | three_prime_UTR | 36736903 | 36737029 | 36736903 | ID=Msa0161420-mRNA-1:three_prime_utr;Parent=Msa0161420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
